mm39_v1_chr6_-_142453531_142453688	0.25037042498575623	CUACAGU	ENSMUST00000134191.3|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B	ENSMUST00000239397.2|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B	ENSMUST00000239395.2|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B	ENSMUST00000032373.12|Ldhb|ENSMUSG00000030246.13|lactate dehydrogenase B
mm39_v1_chr4_-_154721288_154721330	0.16567078897557044	CUACAGU	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr12_-_21467437_21467638	0.12685730402436432	CUACAGU	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr2_+_117942357_117942380	0.11874231552188405	CUACAGU	ENSMUST00000039559.9|Thbs1|ENSMUSG00000040152.9|thrombospondin 1
mm39_v1_chr10_-_117681864_117681940	0.11082425682698664	CUACAGU	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr2_+_78699360_78699443	0.08521372816628157	CUACAGU	ENSMUST00000028398.14|Ube2e3|ENSMUSG00000027011.15|ubiquitin-conjugating enzyme E2E 3
mm39_v1_chr1_+_178626003_178626032	0.0739536372801389	CUACAGU	ENSMUST00000160789.2|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr3_+_60408600_60408663	0.061377847672648804	CUACAGU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr4_+_129714494_129714503	0.056827764128465554	CUACAGU	ENSMUST00000165853.2|Ptp4a2|ENSMUSG00000028788.15|protein tyrosine phosphatase 4a2
mm39_v1_chr13_-_46118433_46118477	0.05562537408518534	CUACAGU	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr11_-_6394385_6394443	0.0428889274493033	CUACAGU	ENSMUST00000109737.9|H2az2|ENSMUSG00000041126.17|H2A.Z histone variant 2
mm39_v1_chr9_-_89996712_89996779	0.04269200617096965	CUACAGU	ENSMUST00000191353.2|Morf4l1|ENSMUSG00000062270.15|mortality factor 4 like 1	ENSMUST00000085248.12|Morf4l1|ENSMUSG00000062270.15|mortality factor 4 like 1
mm39_v1_chr2_+_153003212_153003227	0.042442544296114916	CUACAGU	ENSMUST00000089027.3|Tm9sf4|ENSMUSG00000068040.11|transmembrane 9 superfamily member 4
mm39_v1_chr1_-_80318197_80318229	0.041601459293187634	CUACAGU	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr10_+_95350975_95351043	0.04067009190917314	CUACAGU	ENSMUST00000099329.5|Ube2n|ENSMUSG00000074781.6|ubiquitin-conjugating enzyme E2N
mm39_v1_chr11_-_50216426_50216500	0.04026591185597536	CUACAGU	ENSMUST00000179865.8|Canx|ENSMUSG00000020368.16|calnexin	ENSMUST00000020637.9|Canx|ENSMUSG00000020368.16|calnexin
mm39_v1_chr4_+_155575792_155575877	0.04003258773011794	CUACAGU	ENSMUST00000165335.8|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000105616.10|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1	ENSMUST00000030940.14|Gnb1|ENSMUSG00000029064.16|guanine nucleotide binding protein (G protein), beta 1
mm39_v1_chr17_+_74796473_74796570	0.03949592481045047	CUACAGU	ENSMUST00000024873.7|Yipf4|ENSMUSG00000024072.10|Yip1 domain family, member 4
mm39_v1_chr6_+_120643323_120643386	0.03811794805459934	CUACAGU	ENSMUST00000112686.8|Cecr2|ENSMUSG00000071226.12|CECR2, histone acetyl-lysine reader
mm39_v1_chr2_+_49509288_49509355	0.03653446217901649	CUACAGU	ENSMUST00000028102.14|Kif5c|ENSMUSG00000026764.16|kinesin family member 5C
mm39_v1_chr6_-_38853097_38853167	0.03447812326101124	CUACAGU	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr3_-_144275897_144275989	0.03389013650665715	CUACAGU	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr12_+_69418886_69418946	0.03308940624719766	CUACAGU	ENSMUST00000050063.9|Arf6|ENSMUSG00000044147.9|ADP-ribosylation factor 6
mm39_v1_chr19_-_32717166_32717194	0.03267816768982662	CUACAGU	ENSMUST00000235142.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000070210.6|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000236011.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1
mm39_v1_chr2_+_65676111_65676142	0.03218622805070186	CUACAGU	ENSMUST00000122912.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr11_+_7013422_7013489	0.030824886991519824	CUACAGU	ENSMUST00000020706.5|Adcy1|ENSMUSG00000020431.6|adenylate cyclase 1
mm39_v1_chr2_-_45003270_45003296	0.02910569547742958	CUACAGU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr9_-_95393909_95394049	0.028308862782115328	CUACAGU	ENSMUST00000190019.2|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000185515.7|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000217176.2|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000079659.12|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing	ENSMUST00000078374.13|U2surp|ENSMUSG00000032407.15|U2 snRNP-associated SURP domain containing
mm39_v1_chr2_-_65955338_65955486	0.027786548619155447	CUACAGU	ENSMUST00000028378.4|Galnt3|ENSMUSG00000026994.10|polypeptide N-acetylgalactosaminyltransferase 3
mm39_v1_chr11_+_60590584_60590671	0.027211435695660435	CUACAGU	ENSMUST00000108719.4|Llgl1|ENSMUSG00000020536.13|LLGL1 scribble cell polarity complex component
mm39_v1_chr8_-_58106057_58106074	0.02594106695030312	CUACAGU	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr6_+_14901343_14901363	0.02581951436754947	CUACAGU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chrX_-_103244784_103244810	0.022849168245974816	CUACAGU	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr3_+_57643477_57643549	0.021903194445882904	CUACAGU	ENSMUST00000041826.14|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198510.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000200497.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198214.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000200600.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000198249.5|Rnf13|ENSMUSG00000036503.14|ring finger protein 13	ENSMUST00000199041.2|Rnf13|ENSMUSG00000036503.14|ring finger protein 13
mm39_v1_chr4_-_118148537_118148602	0.021208850628528727	CUACAGU	ENSMUST00000049074.13|Ptprf|ENSMUSG00000033295.15|protein tyrosine phosphatase, receptor type, F
mm39_v1_chr10_+_53473032_53473100	0.019527850826737792	CUACAGU	ENSMUST00000020004.8|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr4_-_46991842_46991916	0.01943212461559223	CUACAGU	ENSMUST00000107749.4|Gabbr2|ENSMUSG00000039809.11|gamma-aminobutyric acid (GABA) B receptor, 2
mm39_v1_chr14_-_121616616_121616746	0.017892944023107947	CUACAGU	ENSMUST00000079817.8|Stk24|ENSMUSG00000063410.9|serine/threonine kinase 24
mm39_v1_chr2_+_60040231_60040288	0.017298381815795467	CUACAGU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr10_+_92996686_92996756	0.017184253066282466	CUACAGU	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr7_+_16043502_16043567	0.016622543403865774	CUACAGU	ENSMUST00000002152.13|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr1_-_182169150_182169190	0.015810113283959124	CUACAGU	ENSMUST00000051431.10|Fbxo28|ENSMUSG00000047539.10|F-box protein 28
mm39_v1_chr8_+_107237483_107237557	0.01564991879851147	CUACAGU	ENSMUST00000080797.8|Cdh3|ENSMUSG00000061048.9|cadherin 3
mm39_v1_chr3_+_157653051_157653148	0.015134743506757616	CUACAGU	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr2_-_167473892_167474015	0.014534105041478547	CUACAGU	ENSMUST00000060645.13|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000140216.2|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000151365.8|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1	ENSMUST00000109207.10|Ube2v1|ENSMUSG00000078923.11|ubiquitin-conjugating enzyme E2 variant 1
mm39_v1_chr6_+_141194886_141194995	0.013854383293451287	CUACAGU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr7_-_34353767_34353823	0.01039248636189185	CUACAGU	ENSMUST00000206501.2|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15	ENSMUST00000108069.8|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15
mm39_v1_chr16_+_58228806_58228886	0.010306732309585436	CUACAGU	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr16_+_41353360_41353429	0.009235558744539398	CUACAGU	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr9_-_31123083_31123120	0.008865105313457274	CUACAGU	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr4_+_8691303_8691381	0.00868853478051533	CUACAGU	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chr3_+_58322119_58322161	0.00864360673207488	CUACAGU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr9_-_117081518_117081557	0.008450889429357056	CUACAGU	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chr12_-_91556761_91556783	0.00833420969989214	CUACAGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr11_-_65160767_65160780	0.008073699828091354	CUACAGU	ENSMUST00000102635.10|Myocd|ENSMUSG00000020542.19|myocardin
mm39_v1_chr8_-_111985824_111985858	0.007689748582835783	CUACAGU	ENSMUST00000169020.8|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1	ENSMUST00000003404.9|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1
mm39_v1_chr9_+_120762466_120762638	0.00740078646820762	CUACAGU	ENSMUST00000007130.15|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1	ENSMUST00000178812.9|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1
mm39_v1_chr4_-_91260265_91260306	0.007087992030429813	CUACAGU	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr2_-_167503416_167503502	0.0065010929072819275	CUACAGU	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr5_-_52347826_52347869	0.006381312129320172	CUACAGU	ENSMUST00000199321.5|Dhx15|ENSMUSG00000029169.12|DEAH (Asp-Glu-Ala-His) box polypeptide 15	ENSMUST00000195922.2|Dhx15|ENSMUSG00000029169.12|DEAH (Asp-Glu-Ala-His) box polypeptide 15	ENSMUST00000031061.12|Dhx15|ENSMUSG00000029169.12|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm39_v1_chr11_-_84416340_84416369	0.00624952457400045	CUACAGU	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr3_+_52175757_52175827	0.005780960712495411	CUACAGU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr16_+_33201164_33201206	0.005243485932979993	CUACAGU	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr16_-_37205277_37205293	0.004712899489440047	CUACAGU	ENSMUST00000114787.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114782.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114775.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chrX_+_92330102_92330128	0.004372794644519783	CUACAGU	ENSMUST00000046565.13|Arx|ENSMUSG00000035277.16|aristaless related homeobox	ENSMUST00000113947.6|Arx|ENSMUSG00000035277.16|aristaless related homeobox
mm39_v1_chr13_+_81031512_81031543	0.0020742916924525504	CUACAGU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chrX_-_71699740_71699795	0.0017212706945000985	CUACAGU	ENSMUST00000055966.13|Gabra3|ENSMUSG00000031343.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm39_v1_chr5_+_115769960_115769992	0.001580605340953865	CUACAGU	ENSMUST00000031492.15|Rab35|ENSMUSG00000029518.16|RAB35, member RAS oncogene family
mm39_v1_chr3_+_82933383_82933522	0.0007174505804532744	CUACAGU	ENSMUST00000029630.15|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain	ENSMUST00000166581.4|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain
mm39_v1_chr2_+_131333800_131333864	0.0006125463257731176	CUACAGU	ENSMUST00000110179.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110189.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110182.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110183.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110186.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110188.8|Smox|ENSMUSG00000027333.19|spermine oxidase
mm39_v1_chr4_-_41314877_41314889	0.0005992244517370958	CUACAGU	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr6_+_8948608_8948619	0.0005171805848217804	CUACAGU	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr4_+_34550918_34550945	0.0004092618636242449	CUACAGU	ENSMUST00000084299.6|Akirin2|ENSMUSG00000028291.8|akirin 2
