mm39_v1_chr11_+_98828495_98828559	1.3088331812235603	GCUGGUG	ENSMUST00000107475.9|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha	ENSMUST00000068133.10|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr8_+_83589979_83590055	1.2913097899605566	GCUGGUG	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr2_-_38177359_38177406	0.7548153944233439	GCUGGUG	ENSMUST00000102787.10|Dennd1a|ENSMUSG00000035392.18|DENN/MADD domain containing 1A
mm39_v1_chr12_+_76371634_76371674	0.7026977136292593	GCUGGUG	ENSMUST00000154078.3|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5	ENSMUST00000095610.9|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5
mm39_v1_chr12_+_24701273_24701410	0.6528380290652724	GCUGGUG	ENSMUST00000020982.7|Klf11|ENSMUSG00000020653.13|Kruppel-like factor 11
mm39_v1_chr8_-_85526653_85526912	0.6322092667185243	GCUGGUG	ENSMUST00000126806.2|Nfix|ENSMUSG00000001911.17|nuclear factor I/X	ENSMUST00000076715.13|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr14_+_34542053_34542108	0.6231250795888554	GCUGGUG	ENSMUST00000043349.7|Grid1|ENSMUSG00000041078.8|glutamate receptor, ionotropic, delta 1
mm39_v1_chr6_-_90787100_90787142	0.5999586228603356	GCUGGUG	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr11_-_69304501_69304501	0.5887739740087378	GCUGGUG	ENSMUST00000094077.5|Kdm6b|ENSMUSG00000018476.8|KDM1 lysine (K)-specific demethylase 6B
mm39_v1_chr10_+_52566616_52566651	0.5436377254992469	GCUGGUG	ENSMUST00000105473.3|Slc35f1|ENSMUSG00000038602.8|solute carrier family 35, member F1
mm39_v1_chr8_-_70449018_70449038	0.5126722894332865	GCUGGUG	ENSMUST00000065169.12|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A	ENSMUST00000212478.2|Gatad2a|ENSMUSG00000036180.16|GATA zinc finger domain containing 2A
mm39_v1_chr8_-_112356957_112357006	0.4711931145848592	GCUGGUG	ENSMUST00000070004.4|Ldhd|ENSMUSG00000031958.17|lactate dehydrogenase D
mm39_v1_chr2_-_33261411_33261496	0.47065987511790053	GCUGGUG	ENSMUST00000131298.7|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000091039.5|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000042615.13|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1
mm39_v1_chr15_-_103248512_103248527	0.45744525045014095	GCUGGUG	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr5_-_145077048_145077091	0.45568795988896343	GCUGGUG	ENSMUST00000031627.9|Pdap1|ENSMUSG00000029623.15|PDGFA associated protein 1
mm39_v1_chr4_-_132149780_132149808	0.447912356713437	GCUGGUG	ENSMUST00000102568.10|Phactr4|ENSMUSG00000066043.14|phosphatase and actin regulator 4
mm39_v1_chr14_+_25459630_25459651	0.4246480682912217	GCUGGUG	ENSMUST00000162645.8|Zmiz1|ENSMUSG00000007817.16|zinc finger, MIZ-type containing 1
mm39_v1_chr7_-_43139390_43139499	0.4241741150643741	GCUGGUG	ENSMUST00000107974.3|Iglon5|ENSMUSG00000013367.6|IgLON family member 5
mm39_v1_chr5_+_130477642_130477671	0.42358274127059764	GCUGGUG	ENSMUST00000111288.4|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr14_+_26300693_26300767	0.4175711088650157	GCUGGUG	ENSMUST00000203874.3|Dennd6a|ENSMUSG00000040818.11|DENN/MADD domain containing 6A	ENSMUST00000037585.9|Dennd6a|ENSMUSG00000040818.11|DENN/MADD domain containing 6A
mm39_v1_chr9_+_56982622_56982727	0.39409372542722065	GCUGGUG	ENSMUST00000167715.8|Sin3a|ENSMUSG00000042557.15|transcriptional regulator, SIN3A (yeast)
mm39_v1_chr5_-_25703700_25703841	0.38573058101256696	GCUGGUG	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr11_+_77985486_77985504	0.38529930879699553	GCUGGUG	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr8_-_29709652_29709669	0.37945295357945047	GCUGGUG	ENSMUST00000168630.4|Unc5d|ENSMUSG00000063626.7|unc-5 netrin receptor D
mm39_v1_chr3_+_107008867_107008883	0.3737109428460318	GCUGGUG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr10_-_75396164_75396164	0.3701851238041095	GCUGGUG	ENSMUST00000051129.10|Lrrc75b|ENSMUSG00000046807.11|leucine rich repeat containing 75B
mm39_v1_chr1_+_136059101_136059142	0.34821304918761703	GCUGGUG	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr15_-_50753061_50753118	0.34376909678738304	GCUGGUG	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr9_-_29874401_29874437	0.3362794267449082	GCUGGUG	ENSMUST00000075069.11|Ntm|ENSMUSG00000059974.11|neurotrimin
mm39_v1_chr7_+_18853778_18853839	0.33558784202559117	GCUGGUG	ENSMUST00000053109.5|Fbxo46|ENSMUSG00000050428.8|F-box protein 46
mm39_v1_chr6_-_113172340_113172349	0.3232324883464049	GCUGGUG	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr6_-_112466780_112466904	0.31731963821746034	GCUGGUG	ENSMUST00000053306.8|Oxtr|ENSMUSG00000049112.10|oxytocin receptor
mm39_v1_chr2_-_45003270_45003296	0.31619855929609425	GCUGGUG	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr5_-_121974913_121974927	0.31211465456185084	GCUGGUG	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chr8_+_27750349_27750360	0.3114306546943377	GCUGGUG	ENSMUST00000033880.7|Eif4ebp1|ENSMUSG00000031490.7|eukaryotic translation initiation factor 4E binding protein 1
mm39_v1_chr5_+_123532819_123532892	0.31011895606722784	GCUGGUG	ENSMUST00000111596.8|Mlxip|ENSMUSG00000038342.16|MLX interacting protein	ENSMUST00000068237.12|Mlxip|ENSMUSG00000038342.16|MLX interacting protein
mm39_v1_chr9_-_75518585_75518616	0.30338792479490556	GCUGGUG	ENSMUST00000098552.10|Tmod2|ENSMUSG00000032186.16|tropomodulin 2	ENSMUST00000064433.11|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chr3_-_107425316_107425339	0.29965154791344945	GCUGGUG	ENSMUST00000169449.8|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17	ENSMUST00000029499.15|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17
mm39_v1_chr5_+_147367237_147367355	0.29098569533907803	GCUGGUG	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr9_+_30941924_30941997	0.2869911595273872	GCUGGUG	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr1_+_6284823_6284907	0.2863065988990219	GCUGGUG	ENSMUST00000027040.13|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chr15_-_89064936_89064991	0.2861503878044637	GCUGGUG	ENSMUST00000109331.9|Plxnb2|ENSMUSG00000036606.18|plexin B2
mm39_v1_chr6_+_120341055_120341124	0.28186893416175524	GCUGGUG	ENSMUST00000005108.10|Kdm5a|ENSMUSG00000030180.16|lysine (K)-specific demethylase 5A
mm39_v1_chr17_-_35407403_35407420	0.2802538370241761	GCUGGUG	ENSMUST00000097336.5|Lst1|ENSMUSG00000073412.7|leukocyte specific transcript 1
mm39_v1_chr1_-_21149392_21149467	0.2792876311680171	GCUGGUG	ENSMUST00000037998.6|Tram2|ENSMUSG00000041779.6|translocating chain-associating membrane protein 2
mm39_v1_chr14_-_20027279_20027324	0.2756570914535161	GCUGGUG	ENSMUST00000160013.8|Gng2|ENSMUSG00000043004.14|guanine nucleotide binding protein (G protein), gamma 2
mm39_v1_chr11_+_44508137_44508169	0.27351816137870616	GCUGGUG	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr15_-_68130636_68130729	0.2712995979424596	GCUGGUG	ENSMUST00000162173.8|Zfat|ENSMUSG00000022335.18|zinc finger and AT hook domain containing	ENSMUST00000160248.8|Zfat|ENSMUSG00000022335.18|zinc finger and AT hook domain containing	ENSMUST00000162054.9|Zfat|ENSMUSG00000022335.18|zinc finger and AT hook domain containing
mm39_v1_chr5_+_129578285_129578317	0.27124461246486675	GCUGGUG	ENSMUST00000053737.9|Sfswap|ENSMUSG00000029439.15|splicing factor SWAP
mm39_v1_chr14_+_30201569_30201642	0.2678078111425658	GCUGGUG	ENSMUST00000022535.9|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A	ENSMUST00000223658.2|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A
mm39_v1_chr5_+_32293145_32293201	0.2665379477429077	GCUGGUG	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr1_-_92107971_92108063	0.2635365218052156	GCUGGUG	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr17_+_6157154_6157182	0.25965366414681845	GCUGGUG	ENSMUST00000149756.8|Tulp4|ENSMUSG00000034377.11|tubby like protein 4
mm39_v1_chr14_+_62793175_62793260	0.25884847972036185	GCUGGUG	ENSMUST00000039064.8|Fam124a|ENSMUSG00000035184.16|family with sequence similarity 124, member A
mm39_v1_chr11_+_115272732_115272759	0.2566868805870525	GCUGGUG	ENSMUST00000053288.6|Cdr2l|ENSMUSG00000050910.6|cerebellar degeneration-related protein 2-like
mm39_v1_chr17_-_17845293_17845329	0.25514948263183834	GCUGGUG	ENSMUST00000041047.4|Lnpep|ENSMUSG00000023845.8|leucyl/cystinyl aminopeptidase
mm39_v1_chr9_-_101128976_101129003	0.25480801413853904	GCUGGUG	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr6_+_114620054_114620066	0.25448024604732167	GCUGGUG	ENSMUST00000032457.17|Atg7|ENSMUSG00000030314.17|autophagy related 7
mm39_v1_chr4_-_34882917_34882964	0.2542935551500001	GCUGGUG	ENSMUST00000098163.9|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292	ENSMUST00000047950.6|Zfp292|ENSMUSG00000039967.15|zinc finger protein 292
mm39_v1_chr2_-_153083322_153083346	0.2505849576447626	GCUGGUG	ENSMUST00000056924.14|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr11_+_74721733_74721746	0.2455821440310248	GCUGGUG	ENSMUST00000000291.9|Mnt|ENSMUSG00000000282.13|max binding protein
mm39_v1_chr11_-_103303480_103303537	0.2449924883908178	GCUGGUG	ENSMUST00000041272.10|Plekhm1|ENSMUSG00000034247.10|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm39_v1_chr16_-_62607105_62607161	0.24311116731834628	GCUGGUG	ENSMUST00000152553.2|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3	ENSMUST00000063089.12|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3
mm39_v1_chr17_-_43187280_43187368	0.2428835751875026	GCUGGUG	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr9_+_40597297_40597349	0.2393883041821619	GCUGGUG	ENSMUST00000034522.8|Clmp|ENSMUSG00000032024.11|CXADR-like membrane protein
mm39_v1_chr4_+_85123654_85123772	0.2380800644132495	GCUGGUG	ENSMUST00000030212.15|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2	ENSMUST00000107189.8|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2	ENSMUST00000107184.8|Sh3gl2|ENSMUSG00000028488.16|SH3-domain GRB2-like 2
mm39_v1_chr5_-_51711237_51711264	0.23617691878057848	GCUGGUG	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr1_+_178014983_178015280	0.23471928556886384	GCUGGUG	ENSMUST00000161075.8|Desi2|ENSMUSG00000026502.14|desumoylating isopeptidase 2	ENSMUST00000027783.14|Desi2|ENSMUSG00000026502.14|desumoylating isopeptidase 2
mm39_v1_chrX_+_72716756_72716848	0.2344973052865	GCUGGUG	ENSMUST00000033752.14|Slc6a8|ENSMUSG00000019558.15|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	ENSMUST00000114467.9|Slc6a8|ENSMUSG00000019558.15|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm39_v1_chrX_+_159551009_159551114	0.23130829038344794	GCUGGUG	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr2_+_136555364_136555412	0.22794028930321136	GCUGGUG	ENSMUST00000028727.11|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25	ENSMUST00000110098.4|Snap25|ENSMUSG00000027273.14|synaptosomal-associated protein 25
mm39_v1_chr13_+_55097200_55097293	0.22722444954374874	GCUGGUG	ENSMUST00000026994.14|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A	ENSMUST00000109994.9|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A
mm39_v1_chr18_+_36098090_36098165	0.22483450992929696	GCUGGUG	ENSMUST00000176873.8|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2	ENSMUST00000177432.8|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2	ENSMUST00000175734.2|Psd2|ENSMUSG00000024347.17|pleckstrin and Sec7 domain containing 2
mm39_v1_chr15_+_80595486_80595541	0.22215530759324545	GCUGGUG	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr12_+_16944896_16944904	0.2212868506878807	GCUGGUG	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr11_-_70578744_70578774	0.2212710617199683	GCUGGUG	ENSMUST00000108545.9|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2	ENSMUST00000120261.8|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2
mm39_v1_chr8_+_23349543_23349570	0.2192653362479532	GCUGGUG	ENSMUST00000238975.2|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000110696.8|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000044331.7|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A
mm39_v1_chr3_+_141170941_141170983	0.21755082943133464	GCUGGUG	ENSMUST00000106236.9|Unc5c|ENSMUSG00000059921.16|unc-5 netrin receptor C
mm39_v1_chr3_-_133250129_133250174	0.20038664851460963	GCUGGUG	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr9_-_107512566_107512584	0.19896683075291824	GCUGGUG	ENSMUST00000055704.12|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chrX_+_100892981_100892998	0.1988795275233848	GCUGGUG	ENSMUST00000124279.6|Nhsl2|ENSMUSG00000079481.12|NHS-like 2	ENSMUST00000101339.8|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr11_+_70453806_70453896	0.19393417236274935	GCUGGUG	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr12_-_46865709_46865720	0.18934289127100407	GCUGGUG	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr9_-_21003268_21003304	0.1886813515891137	GCUGGUG	ENSMUST00000115487.3|Raver1|ENSMUSG00000010205.12|ribonucleoprotein, PTB-binding 1
mm39_v1_chr6_-_53045546_53045640	0.1870907205192481	GCUGGUG	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr16_+_42727926_42728047	0.18563803506318613	GCUGGUG	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr19_-_46315543_46315595	0.1854931481151281	GCUGGUG	ENSMUST00000223917.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000224447.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000041391.5|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000096029.12|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing
mm39_v1_chr9_+_100525501_100525594	0.17985643712768154	GCUGGUG	ENSMUST00000146312.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1	ENSMUST00000129269.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr17_-_48235560_48235577	0.17824319642273678	GCUGGUG	ENSMUST00000113265.8|Foxp4|ENSMUSG00000023991.17|forkhead box P4
mm39_v1_chr5_+_108609087_108609107	0.17590583175841956	GCUGGUG	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr14_+_21549798_21549853	0.17165708383646827	GCUGGUG	ENSMUST00000182855.8|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000182405.9|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000069648.14|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr5_-_76452365_76452398	0.17095469797294324	GCUGGUG	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr7_-_16348862_16348946	0.16831266433366002	GCUGGUG	ENSMUST00000171937.2|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35	ENSMUST00000075845.11|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35
mm39_v1_chr16_+_55895786_55895855	0.1649819422846556	GCUGGUG	ENSMUST00000049128.11|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000089362.9|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202799.4|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000201011.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7	ENSMUST00000202000.2|Senp7|ENSMUSG00000052917.16|SUMO1/sentrin specific peptidase 7
mm39_v1_chr13_+_44884740_44884752	0.16377044426022683	GCUGGUG	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr11_+_31822211_31822263	0.1630540420268856	GCUGGUG	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr19_+_5687503_5687514	0.16235548216278325	GCUGGUG	ENSMUST00000025867.6|Rela|ENSMUSG00000024927.9|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm39_v1_chrX_-_142716200_142716307	0.16024500565756591	GCUGGUG	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr7_-_127837154_127837203	0.1546787091414435	GCUGGUG	ENSMUST00000078816.5|9130023H24Rik|ENSMUSG00000062944.5|RIKEN cDNA 9130023H24 gene
mm39_v1_chr5_+_134128543_134128635	0.15392206177264076	GCUGGUG	ENSMUST00000016088.9|Castor2|ENSMUSG00000015944.10|cytosolic arginine sensor for mTORC1 subunit 2
mm39_v1_chr18_-_75830595_75830653	0.15150490786998538	GCUGGUG	ENSMUST00000165559.3|Ctif|ENSMUSG00000052928.10|CBP80/20-dependent translation initiation factor
mm39_v1_chr7_-_65020955_65021041	0.15127557328664393	GCUGGUG	ENSMUST00000102592.10|Tjp1|ENSMUSG00000030516.15|tight junction protein 1
mm39_v1_chr4_-_44167509_44167609	0.1508859172844277	GCUGGUG	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr10_-_81318489_81318559	0.15018519569839467	GCUGGUG	ENSMUST00000120508.8|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5	ENSMUST00000238823.2|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5	ENSMUST00000118763.8|Celf5|ENSMUSG00000034818.18|CUGBP, Elav-like family member 5
mm39_v1_chr2_-_39080701_39080762	0.1501769799249249	GCUGGUG	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr2_-_17735847_17735898	0.148688824518223	GCUGGUG	ENSMUST00000028080.12|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr6_+_55428963_55429042	0.1438205198188797	GCUGGUG	ENSMUST00000070736.12|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1	ENSMUST00000070756.12|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1	ENSMUST00000166962.8|Adcyap1r1|ENSMUSG00000029778.13|adenylate cyclase activating polypeptide 1 receptor 1
mm39_v1_chr2_-_63928339_63928367	0.14358813622796657	GCUGGUG	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chrX_+_72760183_72760224	0.14169230777743166	GCUGGUG	ENSMUST00000002084.14|Abcd1|ENSMUSG00000031378.15|ATP-binding cassette, sub-family D (ALD), member 1
mm39_v1_chr5_+_14564932_14565007	0.14066730489035242	GCUGGUG	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr2_+_154278357_154278455	0.1402436985862771	GCUGGUG	ENSMUST00000109725.8|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000099178.10|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000045270.15|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000109724.2|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2
mm39_v1_chr8_+_4543021_4543199	0.13882071689548067	GCUGGUG	ENSMUST00000176042.2|Cers4|ENSMUSG00000008206.17|ceramide synthase 4	ENSMUST00000008350.16|Cers4|ENSMUSG00000008206.17|ceramide synthase 4
mm39_v1_chr17_+_44114894_44114932	0.138403866287708	GCUGGUG	ENSMUST00000044895.13|Rcan2|ENSMUSG00000039601.17|regulator of calcineurin 2
mm39_v1_chr2_-_30364219_30364239	0.13581536877826864	GCUGGUG	ENSMUST00000065134.4|Ier5l|ENSMUSG00000089762.4|immediate early response 5-like
mm39_v1_chr10_-_20600797_20600824	0.13115074845563177	GCUGGUG	ENSMUST00000020165.14|Pde7b|ENSMUSG00000019990.16|phosphodiesterase 7B
mm39_v1_chr17_+_35345292_35345400	0.13067696237946522	GCUGGUG	ENSMUST00000061859.7|D17H6S53E|ENSMUSG00000043311.8|DNA segment, Chr 17, human D6S53E
mm39_v1_chr2_-_163760603_163760603	0.12757575739099372	GCUGGUG	ENSMUST00000044734.3|Rims4|ENSMUSG00000035226.6|regulating synaptic membrane exocytosis 4
mm39_v1_chr13_-_103470937_103471007	0.12714658575130475	GCUGGUG	ENSMUST00000167058.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4	ENSMUST00000164111.2|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr1_+_105591595_105591648	0.1260941814540648	GCUGGUG	ENSMUST00000039173.13|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000086721.10|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000190501.7|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
mm39_v1_chr19_+_41471067_41471128	0.12459281085835491	GCUGGUG	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr7_+_135139542_135139560	0.12190173064464031	GCUGGUG	ENSMUST00000073961.8|Ptpre|ENSMUSG00000041836.11|protein tyrosine phosphatase, receptor type, E
mm39_v1_chr4_+_132738787_132738817	0.12032656634177771	GCUGGUG	ENSMUST00000105915.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1	ENSMUST00000105916.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1
mm39_v1_chr2_+_157870606_157870651	0.11971804099958128	GCUGGUG	ENSMUST00000109518.8|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B	ENSMUST00000029180.14|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B
mm39_v1_chr2_-_30014466_30014482	0.11742002849829772	GCUGGUG	ENSMUST00000044751.14|Zer1|ENSMUSG00000039686.15|zyg-11 related, cell cycle regulator
mm39_v1_chr11_+_57409484_57409521	0.1125961748486675	GCUGGUG	ENSMUST00000108849.8|Mfap3|ENSMUSG00000020522.14|microfibrillar-associated protein 3	ENSMUST00000020830.14|Mfap3|ENSMUSG00000020522.14|microfibrillar-associated protein 3
mm39_v1_chr2_+_15060051_15060222	0.11136438786900948	GCUGGUG	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr8_-_73302068_73302131	0.11118785888444079	GCUGGUG	ENSMUST00000058534.7|Med26|ENSMUSG00000045248.7|mediator complex subunit 26
mm39_v1_chrX_+_72386220_72386237	0.11055064523096512	GCUGGUG	ENSMUST00000114499.8|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275	ENSMUST00000033731.4|Zfp275|ENSMUSG00000031365.14|zinc finger protein 275
mm39_v1_chr14_-_36770898_36770922	0.10532850043764734	GCUGGUG	ENSMUST00000225070.2|Rgr|ENSMUSG00000021804.7|retinal G protein coupled receptor	ENSMUST00000022338.7|Rgr|ENSMUSG00000021804.7|retinal G protein coupled receptor
mm39_v1_chr1_-_150268771_150268840	0.10455560684991248	GCUGGUG	ENSMUST00000097546.9|Odr4|ENSMUSG00000006010.15|odr4 GPCR localization factor homolog	ENSMUST00000111913.9|Odr4|ENSMUSG00000006010.15|odr4 GPCR localization factor homolog
mm39_v1_chr9_-_50528727_50528768	0.10233089688214311	GCUGGUG	ENSMUST00000131351.8|Nkapd1|ENSMUSG00000059820.15|NKAP domain containing 1	ENSMUST00000171462.8|Nkapd1|ENSMUSG00000059820.15|NKAP domain containing 1
mm39_v1_chr17_-_49871291_49871371	0.10054936903345477	GCUGGUG	ENSMUST00000224595.2|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2	ENSMUST00000057610.8|Daam2|ENSMUSG00000040260.9|dishevelled associated activator of morphogenesis 2
mm39_v1_chr17_-_47922374_47922471	0.10031013633572071	GCUGGUG	ENSMUST00000024783.9|Bysl|ENSMUSG00000023988.9|bystin-like
mm39_v1_chr13_+_81031512_81031543	0.09996881793477198	GCUGGUG	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr6_-_54543446_54543474	0.09524621456957558	GCUGGUG	ENSMUST00000019268.11|Scrn1|ENSMUSG00000019124.11|secernin 1
mm39_v1_chr9_+_40180726_40180737	0.09457484224976431	GCUGGUG	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
mm39_v1_chr12_+_3476857_3476925	0.09057449999407086	GCUGGUG	ENSMUST00000111215.10|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000092003.12|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000144247.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000153102.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2
mm39_v1_chr9_-_9239056_9239106	0.09016219058640196	GCUGGUG	ENSMUST00000093893.12|Arhgap42|ENSMUSG00000050730.18|Rho GTPase activating protein 42
mm39_v1_chr12_-_79343040_79343086	0.08704357606488342	GCUGGUG	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr19_-_3625698_3625756	0.08675681075876057	GCUGGUG	ENSMUST00000172362.3|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000025846.16|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000226109.2|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000113997.9|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3
mm39_v1_chr5_+_93241287_93241310	0.08627595353114027	GCUGGUG	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr6_-_57668992_57669069	0.0845045130221629	GCUGGUG	ENSMUST00000053386.6|Pyurf|ENSMUSG00000043162.8|Pigy upstream reading frame
mm39_v1_chr2_-_130480014_130480033	0.08393701402480883	GCUGGUG	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr17_-_84773544_84773612	0.08362586029732699	GCUGGUG	ENSMUST00000047524.10|Thada|ENSMUSG00000024251.11|thyroid adenoma associated
mm39_v1_chr8_+_45388466_45388484	0.0800563963769883	GCUGGUG	ENSMUST00000191428.7|Fat1|ENSMUSG00000070047.15|FAT atypical cadherin 1
mm39_v1_chr11_+_68779372_68779388	0.07958690241549178	GCUGGUG	ENSMUST00000065213.5|Rnf222|ENSMUSG00000046490.8|ring finger protein 222
mm39_v1_chr19_+_3817396_3817523	0.07853424542698056	GCUGGUG	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr2_-_32277773_32277809	0.07625971503489921	GCUGGUG	ENSMUST00000050785.14|Lcn2|ENSMUSG00000026822.15|lipocalin 2
mm39_v1_chr14_-_67246282_67246326	0.07597962454312558	GCUGGUG	ENSMUST00000111115.8|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like	ENSMUST00000022634.9|Bnip3l|ENSMUSG00000022051.16|BCL2/adenovirus E1B interacting protein 3-like
mm39_v1_chr7_-_117842787_117842874	0.0758546265901302	GCUGGUG	ENSMUST00000032891.15|Smg1|ENSMUSG00000030655.16|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm39_v1_chr2_-_32243246_32243294	0.07473659776946326	GCUGGUG	ENSMUST00000201433.4|Dnm1|ENSMUSG00000026825.18|dynamin 1	ENSMUST00000113352.9|Dnm1|ENSMUSG00000026825.18|dynamin 1	ENSMUST00000201494.4|Dnm1|ENSMUSG00000026825.18|dynamin 1
mm39_v1_chr2_+_84564394_84564451	0.07349789874948105	GCUGGUG	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chr12_+_84498196_84498292	0.07339657022459997	GCUGGUG	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chr15_-_84872158_84872219	0.0729721308850764	GCUGGUG	ENSMUST00000165743.2|5031439G07Rik|ENSMUSG00000036046.15|RIKEN cDNA 5031439G07 gene	ENSMUST00000047144.13|5031439G07Rik|ENSMUSG00000036046.15|RIKEN cDNA 5031439G07 gene
mm39_v1_chr5_+_71857261_71857292	0.07162320304436906	GCUGGUG	ENSMUST00000031122.9|Gabrb1|ENSMUSG00000029212.12|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm39_v1_chr15_+_59246080_59246128	0.06938041645277117	GCUGGUG	ENSMUST00000168722.3|Nsmce2|ENSMUSG00000059586.11|NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase
mm39_v1_chr4_-_120874376_120874456	0.06911169731974987	GCUGGUG	ENSMUST00000043200.8|Smap2|ENSMUSG00000032870.9|small ArfGAP 2
mm39_v1_chr4_+_59805829_59805914	0.0688615574341565	GCUGGUG	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr15_-_73295029_73295068	0.06862473644752948	GCUGGUG	ENSMUST00000239146.2|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000110036.11|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000228180.3|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2
mm39_v1_chr12_+_86288626_86288711	0.06706254406744176	GCUGGUG	ENSMUST00000221368.2|Gpatch2l|ENSMUSG00000021254.10|G patch domain containing 2 like	ENSMUST00000071106.6|Gpatch2l|ENSMUSG00000021254.10|G patch domain containing 2 like
mm39_v1_chr5_-_22549688_22549708	0.06686840910874564	GCUGGUG	ENSMUST00000062372.14|Reln|ENSMUSG00000042453.15|reelin	ENSMUST00000161356.8|Reln|ENSMUSG00000042453.15|reelin
mm39_v1_chr4_-_70328659_70328702	0.06514453758658025	GCUGGUG	ENSMUST00000144099.8|Cdk5rap2|ENSMUSG00000039298.17|CDK5 regulatory subunit associated protein 2
mm39_v1_chr2_-_160950936_160950950	0.06207779220158768	GCUGGUG	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr3_-_103698853_103698879	0.06152014283442564	GCUGGUG	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr18_-_73836810_73836877	0.0606837755829894	GCUGGUG	ENSMUST00000025393.14|Smad4|ENSMUSG00000024515.14|SMAD family member 4
mm39_v1_chrX_-_156381652_156381711	0.059013446428102384	GCUGGUG	ENSMUST00000149249.2|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2	ENSMUST00000058098.15|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2
mm39_v1_chr6_-_86646118_86646149	0.05870042129342777	GCUGGUG	ENSMUST00000001184.10|Mxd1|ENSMUSG00000001156.10|MAX dimerization protein 1
mm39_v1_chr7_+_66489500_66489561	0.05841076545344846	GCUGGUG	ENSMUST00000107478.9|Adamts17|ENSMUSG00000058145.17|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm39_v1_chr3_+_88439616_88439703	0.05802003613029136	GCUGGUG	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr8_+_11606056_11606111	0.05705355816819542	GCUGGUG	ENSMUST00000210740.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1	ENSMUST00000210670.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1	ENSMUST00000054399.6|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1	ENSMUST00000209646.2|Ing1|ENSMUSG00000045969.9|inhibitor of growth family, member 1
mm39_v1_chr6_+_141194886_141194995	0.05565558091462524	GCUGGUG	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr7_+_126549692_126549756	0.0556063486725286	GCUGGUG	ENSMUST00000106335.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2	ENSMUST00000146017.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr9_-_96993169_96993214	0.05500139287051304	GCUGGUG	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr13_+_31990604_31990633	0.054873773186925545	GCUGGUG	ENSMUST00000062292.5|Foxc1|ENSMUSG00000050295.5|forkhead box C1
mm39_v1_chr13_+_35059285_35059285	0.05356500767332945	GCUGGUG	ENSMUST00000077853.5|Prpf4b|ENSMUSG00000021413.10|pre-mRNA processing factor 4B
mm39_v1_chr1_+_166081664_166081722	0.05322000585396964	GCUGGUG	ENSMUST00000111416.7|Ildr2|ENSMUSG00000040612.14|immunoglobulin-like domain containing receptor 2
mm39_v1_chr12_-_109566764_109566781	0.051181545010782155	GCUGGUG	ENSMUST00000149046.4|Rtl1|ENSMUSG00000085925.4|retrotransposon Gaglike 1
mm39_v1_chr9_-_65734826_65734859	0.04986349968958805	GCUGGUG	ENSMUST00000159109.2|Zfp609|ENSMUSG00000040524.10|zinc finger protein 609
mm39_v1_chr2_-_79287095_79287102	0.04938105053538091	GCUGGUG	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr12_-_14202041_14202070	0.04677473104774597	GCUGGUG	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr4_+_128777339_128777403	0.04665083143755621	GCUGGUG	ENSMUST00000035667.9|Trim62|ENSMUSG00000041000.9|tripartite motif-containing 62
mm39_v1_chr4_+_65042411_65042411	0.04610819700143049	GCUGGUG	ENSMUST00000084501.4|Pappa|ENSMUSG00000028370.8|pregnancy-associated plasma protein A
mm39_v1_chrX_-_135072979_135073091	0.044864726698869574	GCUGGUG	ENSMUST00000163584.8|Tceal8|ENSMUSG00000051579.11|transcription elongation factor A (SII)-like 8	ENSMUST00000060101.10|Tceal8|ENSMUSG00000051579.11|transcription elongation factor A (SII)-like 8
mm39_v1_chr19_-_4993060_4993155	0.044410421101888496	GCUGGUG	ENSMUST00000133504.2|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000133254.2|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000120475.8|Peli3|ENSMUSG00000024901.16|pellino 3	ENSMUST00000025834.15|Peli3|ENSMUSG00000024901.16|pellino 3
mm39_v1_chr8_+_88925821_88925852	0.043366670443855046	GCUGGUG	ENSMUST00000066748.10|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000119033.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000118952.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B
mm39_v1_chr6_-_32565127_32565148	0.04247431323547866	GCUGGUG	ENSMUST00000115096.4|Plxna4|ENSMUSG00000029765.13|plexin A4
mm39_v1_chr14_+_67470884_67471035	0.04191586695173093	GCUGGUG	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr3_-_101017594_101017652	0.040550812419078236	GCUGGUG	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr17_+_36172210_36172232	0.04037582353916455	GCUGGUG	ENSMUST00000074259.15|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)	ENSMUST00000174873.2|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)
mm39_v1_chr7_+_99184645_99184709	0.039838588578530114	GCUGGUG	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr1_-_88629843_88629943	0.039725835652719164	GCUGGUG	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chr18_+_67907946_67907985	0.03933089253679187	GCUGGUG	ENSMUST00000025421.9|Seh1l|ENSMUSG00000079614.5|SEH1-like (S. cerevisiae
mm39_v1_chrX_-_102865546_102865598	0.036565231647914226	GCUGGUG	ENSMUST00000042664.10|Slc16a2|ENSMUSG00000033965.11|solute carrier family 16 (monocarboxylic acid transporters), member 2
mm39_v1_chr10_-_86334700_86334730	0.036130553905060224	GCUGGUG	ENSMUST00000120638.8|Syn3|ENSMUSG00000059602.15|synapsin III
mm39_v1_chr9_-_44231526_44231587	0.03508003507398549	GCUGGUG	ENSMUST00000214602.2|C2cd2l|ENSMUSG00000032120.12|C2 calcium-dependent domain containing 2-like	ENSMUST00000065080.10|C2cd2l|ENSMUSG00000032120.12|C2 calcium-dependent domain containing 2-like
mm39_v1_chr5_-_72661776_72661862	0.034183232442523734	GCUGGUG	ENSMUST00000175766.8|Corin|ENSMUSG00000005220.11|corin, serine peptidase	ENSMUST00000177290.8|Corin|ENSMUSG00000005220.11|corin, serine peptidase	ENSMUST00000176974.2|Corin|ENSMUSG00000005220.11|corin, serine peptidase	ENSMUST00000167460.9|Corin|ENSMUSG00000005220.11|corin, serine peptidase
mm39_v1_chr1_-_119765343_119765403	0.03353030310822129	GCUGGUG	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr18_-_40352372_40352482	0.028137387372113968	GCUGGUG	ENSMUST00000025364.6|Yipf5|ENSMUSG00000024487.6|Yip1 domain family, member 5
mm39_v1_chr10_-_128237087_128237103	0.02671530584715831	GCUGGUG	ENSMUST00000042666.13|Slc39a5|ENSMUSG00000039878.14|solute carrier family 39 (metal ion transporter), member 5
mm39_v1_chr2_+_173501553_173501664	0.0255449589248969	GCUGGUG	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr10_+_40225272_40225385	0.025427583325858927	GCUGGUG	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr6_-_112924205_112924239	0.025182802125865753	GCUGGUG	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr8_+_95584078_95584123	0.023899665344432525	GCUGGUG	ENSMUST00000109521.4|Polr2c|ENSMUSG00000031783.11|polymerase (RNA) II (DNA directed) polypeptide C
mm39_v1_chr6_+_21985902_21985971	0.023648055237296055	GCUGGUG	ENSMUST00000115383.9|Cped1|ENSMUSG00000062980.16|cadherin-like and PC-esterase domain containing 1
mm39_v1_chr8_-_95328348_95328625	0.021938649758979113	GCUGGUG	ENSMUST00000212547.2|Psme3ip1|ENSMUSG00000031774.9|proteasome activator subunit 3 interacting protein 1	ENSMUST00000212507.2|Psme3ip1|ENSMUSG00000031774.9|proteasome activator subunit 3 interacting protein 1	ENSMUST00000034226.8|Psme3ip1|ENSMUSG00000031774.9|proteasome activator subunit 3 interacting protein 1
mm39_v1_chr9_+_113760002_113760055	0.02121860374710209	GCUGGUG	ENSMUST00000084885.12|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1	ENSMUST00000009885.14|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1
mm39_v1_chr11_-_119438569_119438585	0.02120321452036078	GCUGGUG	ENSMUST00000026670.5|Nptx1|ENSMUSG00000025582.5|neuronal pentraxin 1
mm39_v1_chr19_-_60569323_60569468	0.020711550846720612	GCUGGUG	ENSMUST00000111460.5|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000166712.9|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000081790.15|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1
mm39_v1_chr1_+_82294173_82294351	0.019715525036840466	GCUGGUG	ENSMUST00000027322.14|Rhbdd1|ENSMUSG00000026142.16|rhomboid domain containing 1
mm39_v1_chr1_+_136395673_136395696	0.019641019284496766	GCUGGUG	ENSMUST00000189413.7|Kif14|ENSMUSG00000041498.14|kinesin family member 14	ENSMUST00000047817.12|Kif14|ENSMUSG00000041498.14|kinesin family member 14
mm39_v1_chr8_+_120637531_120637596	0.019290387197688746	GCUGGUG	ENSMUST00000108988.9|Usp10|ENSMUSG00000031826.21|ubiquitin specific peptidase 10	ENSMUST00000127664.2|Galnt2l|ENSMUSG00000092329.2|polypeptide N-acetylgalactosaminyltransferase 2-like	ENSMUST00000108982.11|Usp10|ENSMUSG00000031826.21|ubiquitin specific peptidase 10
mm39_v1_chr4_-_140867038_140867083	0.018819944176658936	GCUGGUG	ENSMUST00000148204.8|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1	ENSMUST00000102487.4|Szrd1|ENSMUSG00000040842.18|SUZ RNA binding domain containing 1
mm39_v1_chr3_+_104696342_104696374	0.016807082603271132	GCUGGUG	ENSMUST00000106787.8|Rhoc|ENSMUSG00000002233.14|ras homolog family member C	ENSMUST00000176347.6|Rhoc|ENSMUSG00000002233.14|ras homolog family member C
mm39_v1_chr2_+_121786444_121786498	0.01601740489884423	GCUGGUG	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr11_+_75541324_75541370	0.015988948797564847	GCUGGUG	ENSMUST00000102505.10|Myo1c|ENSMUSG00000017774.20|myosin IC
mm39_v1_chr2_-_104324745_104324809	0.015742170801230675	GCUGGUG	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr19_+_9979033_9979067	0.014263811456598696	GCUGGUG	ENSMUST00000121418.8|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1
mm39_v1_chr1_-_86598286_86598302	0.012809886774240753	GCUGGUG	ENSMUST00000027449.6|Nppc|ENSMUSG00000026241.6|natriuretic peptide type C
mm39_v1_chr2_+_157756535_157756573	0.011552851747560768	GCUGGUG	ENSMUST00000109523.2|Vstm2l|ENSMUSG00000037843.7|V-set and transmembrane domain containing 2-like
mm39_v1_chr4_-_126096551_126096554	0.01071380060739673	GCUGGUG	ENSMUST00000080919.12|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
mm39_v1_chr8_-_95422851_95422929	0.009738880488739183	GCUGGUG	ENSMUST00000034227.6|Pllp|ENSMUSG00000031775.6|plasma membrane proteolipid
mm39_v1_chr1_+_4878046_4878137	0.009491281938640449	GCUGGUG	ENSMUST00000027036.11|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000150971.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000119612.9|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000137887.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1	ENSMUST00000115529.8|Lypla1|ENSMUSG00000025903.15|lysophospholipase 1
mm39_v1_chr18_-_46658957_46659078	0.009335148415481592	GCUGGUG	ENSMUST00000036226.6|Fem1c|ENSMUSG00000033319.6|fem 1 homolog c
mm39_v1_chr8_-_120567236_120567288	0.00861668534432038	GCUGGUG	ENSMUST00000211873.2|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)	ENSMUST00000168698.2|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)	ENSMUST00000034285.14|Cotl1|ENSMUSG00000031827.14|coactosin-like 1 (Dictyostelium)
mm39_v1_chr11_-_72026547_72026604	0.005520797118866082	GCUGGUG	ENSMUST00000108508.3|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3	ENSMUST00000075258.13|Pitpnm3|ENSMUSG00000040543.17|PITPNM family member 3
mm39_v1_chr11_+_116809669_116809717	0.004259435884349152	GCUGGUG	ENSMUST00000103027.10|Mgat5b|ENSMUSG00000043857.17|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm39_v1_chr12_+_112112621_112112657	0.0039687314403550646	GCUGGUG	ENSMUST00000128402.3|Kif26a|ENSMUSG00000021294.8|kinesin family member 26A
mm39_v1_chr5_+_30971915_30971985	0.0036456182458298398	GCUGGUG	ENSMUST00000031058.15|Mapre3|ENSMUSG00000029166.15|microtubule-associated protein, RP/EB family, member 3
mm39_v1_chr13_-_54914366_54914408	0.00322987383772959	GCUGGUG	ENSMUST00000036825.14|Sncb|ENSMUSG00000034891.14|synuclein, beta
mm39_v1_chr2_+_10377237_10377309	0.0026455663173474294	GCUGGUG	ENSMUST00000114864.9|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2	ENSMUST00000116594.9|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2	ENSMUST00000041105.7|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2
mm39_v1_chr16_+_33201164_33201206	0.002631498776849859	GCUGGUG	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr2_-_167503416_167503502	0.0017770124652066444	GCUGGUG	ENSMUST00000125544.3|Gm20431|ENSMUSG00000089739.3|predicted gene 20431	ENSMUST00000006587.7|Tmem189|ENSMUSG00000090213.2|transmembrane protein 189
mm39_v1_chr5_-_116729870_116729889	0.0013790567472758163	GCUGGUG	ENSMUST00000076124.7|Srrm4|ENSMUSG00000063919.12|serine/arginine repetitive matrix 4
mm39_v1_chr16_-_96971905_96971952	0.0002720809984292952	GCUGGUG	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr1_-_36597430_36597446	0.00011282970247225104	GCUGGUG	ENSMUST00000191677.6|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	ENSMUST00000114991.8|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
