mm39_v1_chr17_-_32074754_32074780	0.648569581400965	GUAGUGU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr8_-_123768759_123768834	0.42480914680729337	GUAGUGU	ENSMUST00000098334.13|Ankrd11|ENSMUSG00000035569.18|ankyrin repeat domain 11
mm39_v1_chr9_-_123680927_123680974	0.39594117177451443	GUAGUGU	ENSMUST00000184082.3|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1	ENSMUST00000167595.9|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1
mm39_v1_chr9_-_110237276_110237285	0.319209880546687	GUAGUGU	ENSMUST00000040021.12|Ptpn23|ENSMUSG00000036057.12|protein tyrosine phosphatase, non-receptor type 23
mm39_v1_chr9_-_43017249_43017322	0.31457493166280087	GUAGUGU	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr4_+_150366028_150366103	0.3051212227004298	GUAGUGU	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr7_-_63588610_63588704	0.30279405768858686	GUAGUGU	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr2_-_12306722_12306734	0.2956922865883213	GUAGUGU	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr18_+_34354031_34354073	0.27783199756602633	GUAGUGU	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr1_-_96799832_96799905	0.2505531856647443	GUAGUGU	ENSMUST00000071985.6|Slco4c1|ENSMUSG00000040693.8|solute carrier organic anion transporter family, member 4C1
mm39_v1_chr3_+_88857929_88857975	0.21749783161834338	GUAGUGU	ENSMUST00000186583.7|Ash1l|ENSMUSG00000028053.14|ASH1 like histone lysine methyltransferase
mm39_v1_chr14_-_4198510_4198572	0.2094303392152495	GUAGUGU	ENSMUST00000133460.2|Nkiras1|ENSMUSG00000021772.16|NFKB inhibitor interacting Ras-like protein 1	ENSMUST00000132374.9|Nkiras1|ENSMUSG00000021772.16|NFKB inhibitor interacting Ras-like protein 1
mm39_v1_chr5_+_123532819_123532892	0.18625830666642465	GUAGUGU	ENSMUST00000111596.8|Mlxip|ENSMUSG00000038342.16|MLX interacting protein	ENSMUST00000068237.12|Mlxip|ENSMUSG00000038342.16|MLX interacting protein
mm39_v1_chr6_-_24664959_24665039	0.17668588984085637	GUAGUGU	ENSMUST00000041737.8|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor	ENSMUST00000031695.15|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor
mm39_v1_chr17_+_36227433_36227458	0.1759046735771645	GUAGUGU	ENSMUST00000087211.9|Ppp1r10|ENSMUSG00000039220.17|protein phosphatase 1, regulatory subunit 10
mm39_v1_chr14_-_25769457_25769513	0.17038801905547601	GUAGUGU	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr6_-_83418656_83418666	0.16850720599201435	GUAGUGU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr5_-_106844685_106844707	0.16468182592118186	GUAGUGU	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr5_+_103902020_103902056	0.16261046276293303	GUAGUGU	ENSMUST00000054979.10|Aff1|ENSMUSG00000029313.19|AF4/FMR2 family, member 1
mm39_v1_chr15_+_12117899_12118008	0.1606096926297592	GUAGUGU	ENSMUST00000122941.8|Zfr|ENSMUSG00000022201.17|zinc finger RNA binding protein
mm39_v1_chr8_-_110464345_110464418	0.15855057199501368	GUAGUGU	ENSMUST00000212605.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000093162.4|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000212726.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like
mm39_v1_chr5_-_62923463_62923615	0.15478511441488643	GUAGUGU	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr15_-_102165884_102165952	0.15149440154362792	GUAGUGU	ENSMUST00000043172.15|Rarg|ENSMUSG00000001288.16|retinoic acid receptor, gamma
mm39_v1_chr11_+_68393845_68393902	0.14930012330430445	GUAGUGU	ENSMUST00000102613.8|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5	ENSMUST00000060441.7|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5
mm39_v1_chr15_-_9529898_9529932	0.14706826813173768	GUAGUGU	ENSMUST00000228782.2|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor	ENSMUST00000003981.6|Il7r|ENSMUSG00000003882.6|interleukin 7 receptor
mm39_v1_chr7_-_16348862_16348946	0.13893084633220168	GUAGUGU	ENSMUST00000171937.2|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35	ENSMUST00000075845.11|Arhgap35|ENSMUSG00000058230.13|Rho GTPase activating protein 35
mm39_v1_chr16_+_42727926_42728047	0.13757776552658027	GUAGUGU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr12_-_91556761_91556783	0.13415830488905064	GUAGUGU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr6_+_128339882_128340022	0.1339443095792117	GUAGUGU	ENSMUST00000073316.13|Foxm1|ENSMUSG00000001517.15|forkhead box M1
mm39_v1_chr9_-_101128976_101129003	0.12656062352076958	GUAGUGU	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr5_+_108609087_108609107	0.1265340338724262	GUAGUGU	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr7_-_117842787_117842874	0.12576880681188937	GUAGUGU	ENSMUST00000032891.15|Smg1|ENSMUSG00000030655.16|SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)
mm39_v1_chr6_+_136495784_136495808	0.12434306801718431	GUAGUGU	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr6_-_39354570_39354612	0.12157331994417611	GUAGUGU	ENSMUST00000200771.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202204.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202952.2|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202400.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000200969.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202749.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000090243.8|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm39_v1_chr4_-_135749032_135749074	0.11990801664116078	GUAGUGU	ENSMUST00000030427.6|Eloa|ENSMUSG00000028668.6|elongin A
mm39_v1_chr10_-_127124718_127124787	0.11808395833003338	GUAGUGU	ENSMUST00000156208.2|Mbd6|ENSMUSG00000025409.15|methyl-CpG binding domain protein 6	ENSMUST00000026476.13|Mbd6|ENSMUSG00000025409.15|methyl-CpG binding domain protein 6
mm39_v1_chr8_+_71207326_71207400	0.11584325019441241	GUAGUGU	ENSMUST00000110093.9|Rab3a|ENSMUSG00000031840.15|RAB3A, member RAS oncogene family	ENSMUST00000143118.3|Rab3a|ENSMUSG00000031840.15|RAB3A, member RAS oncogene family	ENSMUST00000034301.12|Rab3a|ENSMUSG00000031840.15|RAB3A, member RAS oncogene family	ENSMUST00000110090.8|Rab3a|ENSMUSG00000031840.15|RAB3A, member RAS oncogene family
mm39_v1_chr2_-_73722874_73722900	0.11385832316279909	GUAGUGU	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr3_-_115800989_115801060	0.09999902198951346	GUAGUGU	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr10_-_120312374_120312388	0.0990094909537216	GUAGUGU	ENSMUST00000072777.14|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2	ENSMUST00000159699.2|Hmga2|ENSMUSG00000056758.15|high mobility group AT-hook 2
mm39_v1_chr12_+_16944896_16944904	0.09689825396897576	GUAGUGU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr13_+_81031512_81031543	0.09500614875990636	GUAGUGU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr1_+_87683592_87683839	0.09434695686027499	GUAGUGU	ENSMUST00000144047.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000027512.13|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113186.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113190.3|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)
mm39_v1_chr13_+_113931038_113931108	0.09305435858247905	GUAGUGU	ENSMUST00000091201.7|Arl15|ENSMUSG00000042348.11|ADP-ribosylation factor-like 15
mm39_v1_chr15_+_10177709_10177741	0.09297312259466192	GUAGUGU	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr19_+_41471067_41471128	0.09185213339973726	GUAGUGU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr15_-_82108531_82108563	0.09162936449856511	GUAGUGU	ENSMUST00000109535.3|Tnfrsf13c|ENSMUSG00000068105.12|tumor necrosis factor receptor superfamily, member 13c	ENSMUST00000089161.10|Tnfrsf13c|ENSMUSG00000068105.12|tumor necrosis factor receptor superfamily, member 13c
mm39_v1_chr10_+_20188207_20188238	0.08726984066871882	GUAGUGU	ENSMUST00000092678.10|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1	ENSMUST00000043881.12|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1
mm39_v1_chr1_+_127701901_127701975	0.08658651336197778	GUAGUGU	ENSMUST00000112570.2|Ccnt2|ENSMUSG00000026349.15|cyclin T2	ENSMUST00000027587.15|Ccnt2|ENSMUSG00000026349.15|cyclin T2
mm39_v1_chr15_-_77726333_77726375	0.08631786020083351	GUAGUGU	ENSMUST00000016771.13|Myh9|ENSMUSG00000022443.18|myosin, heavy polypeptide 9, non-muscle
mm39_v1_chr14_-_21102487_21102592	0.0851070397143048	GUAGUGU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr2_-_38955452_38955513	0.08313259683194903	GUAGUGU	ENSMUST00000112850.9|Golga1|ENSMUSG00000026754.17|golgi autoantigen, golgin subfamily a, 1
mm39_v1_chr5_+_138083345_138083410	0.08096496415869424	GUAGUGU	ENSMUST00000019660.11|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1	ENSMUST00000066617.12|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1	ENSMUST00000110963.8|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1
mm39_v1_chr7_+_5083212_5083300	0.08085305499328944	GUAGUGU	ENSMUST00000098845.10|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000146317.8|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000153169.2|Epn1|ENSMUSG00000035203.17|epsin 1	ENSMUST00000045277.7|Epn1|ENSMUSG00000035203.17|epsin 1
mm39_v1_chrX_-_107877909_107877987	0.07989603044811737	GUAGUGU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr5_-_76452365_76452398	0.07985601163209768	GUAGUGU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr11_+_80319424_80319484	0.0790826513137836	GUAGUGU	ENSMUST00000173938.8|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	ENSMUST00000017572.14|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm39_v1_chr11_+_68582731_68582741	0.07762193156836676	GUAGUGU	ENSMUST00000102611.10|Myh10|ENSMUSG00000020900.16|myosin, heavy polypeptide 10, non-muscle
mm39_v1_chr10_+_7556948_7556990	0.0759617911624691	GUAGUGU	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr13_-_3661064_3661118	0.07508497424421047	GUAGUGU	ENSMUST00000096069.5|Tasor2|ENSMUSG00000033799.11|transcription activation suppressor family member 2
mm39_v1_chr9_-_50920236_50920380	0.07423941436282586	GUAGUGU	ENSMUST00000176824.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000176663.8|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2	ENSMUST00000041375.11|Sik2|ENSMUSG00000037112.17|salt inducible kinase 2
mm39_v1_chr2_-_45003270_45003296	0.0720215163640687	GUAGUGU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_-_130681978_130682070	0.07182117562437486	GUAGUGU	ENSMUST00000044766.15|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000138990.2|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000120316.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000110243.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene
mm39_v1_chr18_+_42408418_42408457	0.06852866020954253	GUAGUGU	ENSMUST00000091920.6|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000046972.14|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000236240.2|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27
mm39_v1_chr2_+_113271409_113271424	0.06819031995328448	GUAGUGU	ENSMUST00000081349.9|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chr19_+_16110176_16110285	0.06766953761628601	GUAGUGU	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr17_+_83658354_83658453	0.06602880025780865	GUAGUGU	ENSMUST00000096766.12|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000049503.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000112363.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000234460.2|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4
mm39_v1_chr10_+_69932930_69933066	0.06461700308010494	GUAGUGU	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr17_+_28128307_28128532	0.058999022326148134	GUAGUGU	ENSMUST00000233525.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000025058.15|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000233866.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr8_+_26092252_26092335	0.056427310949015055	GUAGUGU	ENSMUST00000136107.9|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000146919.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000139966.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000142395.8|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3	ENSMUST00000143445.2|Nsd3|ENSMUSG00000054823.18|nuclear receptor binding SET domain protein 3
mm39_v1_chr2_+_6327431_6327478	0.05621831823087823	GUAGUGU	ENSMUST00000114937.8|Usp6nl|ENSMUSG00000039046.16|USP6 N-terminal like
mm39_v1_chrX_-_47297436_47297568	0.05459949037774594	GUAGUGU	ENSMUST00000037960.11|Zdhhc9|ENSMUSG00000036985.13|zinc finger, DHHC domain containing 9
mm39_v1_chr7_+_44667377_44667433	0.054556321786244345	GUAGUGU	ENSMUST00000044111.10|Rras|ENSMUSG00000038387.10|related RAS viral (r-ras) oncogene
mm39_v1_chr4_-_132611820_132611835	0.054204560207795995	GUAGUGU	ENSMUST00000030698.5|Stx12|ENSMUSG00000028879.5|syntaxin 12
mm39_v1_chr18_+_5591864_5591902	0.052773456068659415	GUAGUGU	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr16_+_10306075_10306143	0.05143304032997285	GUAGUGU	ENSMUST00000023147.8|Ciita|ENSMUSG00000022504.11|class II transactivator
mm39_v1_chr11_+_75570085_75570167	0.05082666002061114	GUAGUGU	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chr1_-_186438177_186438196	0.04839617818506502	GUAGUGU	ENSMUST00000045288.14|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr4_+_131649001_131649082	0.04837274165861867	GUAGUGU	ENSMUST00000094666.4|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr7_+_89779564_89779724	0.047939900797576554	GUAGUGU	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr2_+_113158053_113158097	0.04670767286879113	GUAGUGU	ENSMUST00000099576.9|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chr15_+_6737853_6737883	0.0442131868429715	GUAGUGU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chrX_-_73067514_73067524	0.04348106465617835	GUAGUGU	ENSMUST00000033769.15|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000114352.8|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000068286.12|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000114360.10|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1	ENSMUST00000114354.10|Irak1|ENSMUSG00000031392.19|interleukin-1 receptor-associated kinase 1
mm39_v1_chr17_-_84495364_84495381	0.041711145870192985	GUAGUGU	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr13_+_112600604_112600696	0.04035427064858426	GUAGUGU	ENSMUST00000183663.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000184311.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000183886.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer
mm39_v1_chr7_+_138968988_138969077	0.039280618769001976	GUAGUGU	ENSMUST00000106098.8|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A	ENSMUST00000026550.14|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A
mm39_v1_chr3_-_144426076_144426097	0.03837761884843221	GUAGUGU	ENSMUST00000198254.5|Sh3glb1|ENSMUSG00000037062.14|SH3-domain GRB2-like B1 (endophilin)	ENSMUST00000163279.6|Sh3glb1|ENSMUSG00000037062.14|SH3-domain GRB2-like B1 (endophilin)
mm39_v1_chr1_+_180158035_180158058	0.03581960503269485	GUAGUGU	ENSMUST00000070181.7|Itpkb|ENSMUSG00000038855.11|inositol 1,4,5-trisphosphate 3-kinase B
mm39_v1_chr9_-_22300409_22300490	0.035261725505271846	GUAGUGU	ENSMUST00000040912.9|Anln|ENSMUSG00000036777.9|anillin, actin binding protein
mm39_v1_chr7_-_144024451_144024512	0.035151025030732634	GUAGUGU	ENSMUST00000033407.13|Cttn|ENSMUSG00000031078.16|cortactin
mm39_v1_chrX_+_18028814_18028897	0.034098953659292525	GUAGUGU	ENSMUST00000044484.13|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A	ENSMUST00000052368.9|Kdm6a|ENSMUSG00000037369.18|lysine (K)-specific demethylase 6A
mm39_v1_chr14_+_30547541_30547595	0.03312347914522896	GUAGUGU	ENSMUST00000006701.8|Stimate|ENSMUSG00000006526.14|STIM activating enhancer
mm39_v1_chr15_-_73056713_73056822	0.03265463555186083	GUAGUGU	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr1_+_139349912_139350120	0.032242914451439564	GUAGUGU	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr11_-_95200382_95200428	0.030536418779024528	GUAGUGU	ENSMUST00000092766.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7	ENSMUST00000072621.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7
mm39_v1_chr2_-_153371861_153371907	0.029986162034360008	GUAGUGU	ENSMUST00000035346.14|Nol4l|ENSMUSG00000061411.13|nucleolar protein 4-like
mm39_v1_chr17_-_47998953_47999108	0.028329293509729177	GUAGUGU	ENSMUST00000113301.2|Tomm6|ENSMUSG00000033475.16|translocase of outer mitochondrial membrane 6	ENSMUST00000113302.10|Tomm6|ENSMUSG00000033475.16|translocase of outer mitochondrial membrane 6
mm39_v1_chr12_-_51738666_51738738	0.026138018576073715	GUAGUGU	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr1_-_151304191_151304225	0.025453761101125773	GUAGUGU	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr4_+_102112189_102112200	0.02438607881903123	GUAGUGU	ENSMUST00000106908.9|Pde4b|ENSMUSG00000028525.17|phosphodiesterase 4B, cAMP specific
mm39_v1_chr2_-_169973076_169973140	0.021075530736393074	GUAGUGU	ENSMUST00000063710.13|Zfp217|ENSMUSG00000052056.15|zinc finger protein 217
mm39_v1_chr7_-_66339319_66339351	0.02057771309595671	GUAGUGU	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr16_+_87495792_87495872	0.019338097185390094	GUAGUGU	ENSMUST00000026703.6|Bach1|ENSMUSG00000025612.6|BTB and CNC homology 1, basic leucine zipper transcription factor 1
mm39_v1_chr16_-_56537808_56537820	0.01845230168134541	GUAGUGU	ENSMUST00000065515.14|Tfg|ENSMUSG00000022757.20|Trk-fused gene
mm39_v1_chr9_-_44792575_44792621	0.01747819497150361	GUAGUGU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr1_+_55170390_55170409	0.014966314946873768	GUAGUGU	ENSMUST00000159311.8|Mob4|ENSMUSG00000025979.14|MOB family member 4, phocein	ENSMUST00000162364.8|Mob4|ENSMUSG00000025979.14|MOB family member 4, phocein
mm39_v1_chr11_-_88609048_88609136	0.01411812188327822	GUAGUGU	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr10_-_37014859_37014933	0.014044101651278156	GUAGUGU	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr2_-_166838018_166838029	0.013681736353248621	GUAGUGU	ENSMUST00000049412.12|Stau1|ENSMUSG00000039536.17|staufen double-stranded RNA binding protein 1
mm39_v1_chr3_+_52175757_52175827	0.01360892923149923	GUAGUGU	ENSMUST00000053764.7|Foxo1|ENSMUSG00000044167.7|forkhead box O1
mm39_v1_chr4_+_116578117_116578201	0.013483881475812075	GUAGUGU	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr4_-_129534853_129534873	0.012971002973031233	GUAGUGU	ENSMUST00000046425.16|Txlna|ENSMUSG00000053841.16|taxilin alpha	ENSMUST00000133803.8|Txlna|ENSMUSG00000053841.16|taxilin alpha
mm39_v1_chr18_-_6241470_6241550	0.011839734882690859	GUAGUGU	ENSMUST00000163210.2|Kif5b|ENSMUSG00000006740.15|kinesin family member 5B	ENSMUST00000025083.14|Kif5b|ENSMUSG00000006740.15|kinesin family member 5B
mm39_v1_chr10_-_89279751_89279834	0.010883991984775566	GUAGUGU	ENSMUST00000219351.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3	ENSMUST00000220128.2|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3	ENSMUST00000099374.9|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3	ENSMUST00000105298.3|Gas2l3|ENSMUSG00000074802.12|growth arrest-specific 2 like 3
mm39_v1_chr7_+_44498640_44498720	0.010821822159303576	GUAGUGU	ENSMUST00000054343.15|Akt1s1|ENSMUSG00000011096.18|AKT1 substrate 1 (proline-rich)	ENSMUST00000142880.3|Akt1s1|ENSMUSG00000011096.18|AKT1 substrate 1 (proline-rich)
mm39_v1_chrX_+_5959507_5959507	0.010401546210596219	GUAGUGU	ENSMUST00000103007.4|Nudt11|ENSMUSG00000073295.5|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm39_v1_chr18_-_77801624_77801673	0.009513370199950095	GUAGUGU	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr10_-_7831979_7832035	0.009208836100764159	GUAGUGU	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr3_+_9315662_9315662	0.008670861529243288	GUAGUGU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr4_-_148711453_148711492	0.008156217848387718	GUAGUGU	ENSMUST00000165113.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000172073.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000105702.9|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000084125.10|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein
mm39_v1_chr15_-_94487751_94487770	0.007225679516748444	GUAGUGU	ENSMUST00000023087.13|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1	ENSMUST00000152590.2|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1
mm39_v1_chr1_-_46893206_46893240	0.006299758757515439	GUAGUGU	ENSMUST00000027131.6|Slc39a10|ENSMUSG00000025986.7|solute carrier family 39 (zinc transporter), member 10
mm39_v1_chrX_-_143471176_143471176	0.005850644040039171	GUAGUGU	ENSMUST00000040184.4|Trpc5|ENSMUSG00000041710.5|transient receptor potential cation channel, subfamily C, member 5
mm39_v1_chr7_+_109617456_109617481	0.005240855790559014	GUAGUGU	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr14_-_8457069_8457272	0.005149936015909305	GUAGUGU	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr3_+_144998233_144998330	0.003928530621503043	GUAGUGU	ENSMUST00000029848.5|Col24a1|ENSMUSG00000028197.5|collagen, type XXIV, alpha 1	ENSMUST00000139001.2|Col24a1|ENSMUSG00000028197.5|collagen, type XXIV, alpha 1
mm39_v1_chr5_-_143513732_143513791	0.0038173069817271526	GUAGUGU	ENSMUST00000100489.4|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1	ENSMUST00000080537.14|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1
mm39_v1_chr2_-_52632178_52632293	0.003114219791354948	GUAGUGU	ENSMUST00000102759.8|Stam2|ENSMUSG00000055371.18|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	ENSMUST00000127316.8|Stam2|ENSMUSG00000055371.18|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm39_v1_chr9_-_90152759_90152898	0.002332171346138995	GUAGUGU	ENSMUST00000041767.14|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B	ENSMUST00000128874.3|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B
mm39_v1_chr13_+_38010203_38010291	0.0007452221463099115	GUAGUGU	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr2_-_103133524_103133623	0.000637390310522852	GUAGUGU	ENSMUST00000090475.10|Ehf|ENSMUSG00000012350.16|ets homologous factor
