mm39_v1_chr4_-_62126662_62126724	1.4844711557958385	Gli3_Zic1	ENSMUST00000222050.2|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37	ENSMUST00000068822.4|Zfp37|ENSMUSG00000028389.13|zinc finger protein 37
mm39_v1_chr13_-_23735822_23735849	1.2120734229849095	Gli3_Zic1	ENSMUST00000102971.2|H4c6|ENSMUSG00000069274.4|H4 clustered histone 6
mm39_v1_chr3_+_88049875_88049892	1.1225743033612825	Gli3_Zic1	ENSMUST00000107558.9|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000107559.3|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr8_+_91635192_91635248	1.0565655468274446	Gli3_Zic1	ENSMUST00000211403.2|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr7_+_127078371_127078396	0.9234493204721084	Gli3_Zic1	ENSMUST00000205432.3|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr7_+_127845984_127846120	0.8577042354910747	Gli3_Zic1	ENSMUST00000164710.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1	ENSMUST00000070656.12|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chrX_+_7439839_7439883	0.8368531864043494	Gli3_Zic1	ENSMUST00000144719.9|Flicr|ENSMUSG00000039545.17|Foxp3 regulating long intergenic noncoding RNA	ENSMUST00000234896.2|Foxp3|ENSMUSG00000039521.14|forkhead box P3
mm39_v1_chr11_-_102255999_102256106	0.7839780745895673	Gli3_Zic1	ENSMUST00000006749.10|Slc4a1|ENSMUSG00000006574.16|solute carrier family 4 (anion exchanger), member 1
mm39_v1_chr11_+_98851238_98851312	0.7786249714285465	Gli3_Zic1	ENSMUST00000107473.3|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr16_-_4376471_4376647	0.7731023839127437	Gli3_Zic1	ENSMUST00000230875.2|Tfap4|ENSMUSG00000005718.9|transcription factor AP4
mm39_v1_chr11_+_68986043_68986115	0.6914776487072289	Gli3_Zic1	ENSMUST00000101004.9|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr10_-_49664839_49664865	0.6377141001566125	Gli3_Zic1	ENSMUST00000220263.2|Grik2|ENSMUSG00000056073.17|glutamate receptor, ionotropic, kainate 2 (beta 2)	ENSMUST00000218823.2|Grik2|ENSMUSG00000056073.17|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm39_v1_chr9_+_106247943_106248054	0.6259120664647083	Gli3_Zic1	ENSMUST00000173748.2|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr13_+_44882998_44883026	0.6090847637905576	Gli3_Zic1	ENSMUST00000174068.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr2_-_59778560_59778594	0.5980270442402936	Gli3_Zic1	ENSMUST00000153136.2|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr10_+_22034460_22034491	0.5937263581599593	Gli3_Zic1	ENSMUST00000181645.8|Raet1e|ENSMUSG00000053219.16|retinoic acid early transcript 1E	ENSMUST00000105522.9|H60b|ENSMUSG00000075297.11|histocompatibility 60b
mm39_v1_chr1_-_133728779_133728805	0.58958953613692	Gli3_Zic1	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr2_+_157401998_157402050	0.5681138560795488	Gli3_Zic1	ENSMUST00000153739.9|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173595.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000109526.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173839.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173041.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000173793.8|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000172487.2|Nnat|ENSMUSG00000067786.17|neuronatin	ENSMUST00000088484.6|Nnat|ENSMUSG00000067786.17|neuronatin
mm39_v1_chr15_-_53765869_53765926	0.5553045452500921	Gli3_Zic1	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr11_-_78136767_78136813	0.5150657738137007	Gli3_Zic1	ENSMUST00000002121.5|Supt6|ENSMUSG00000002052.7|SPT6, histone chaperone and transcription elongation factor
mm39_v1_chr16_-_90807983_90808001	0.5089397702612294	Gli3_Zic1	ENSMUST00000170853.8|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000130813.3|Synj1|ENSMUSG00000022973.19|synaptojanin 1	ENSMUST00000118390.10|Synj1|ENSMUSG00000022973.19|synaptojanin 1
mm39_v1_chrX_+_100342749_100342808	0.4985411678482587	Gli3_Zic1	ENSMUST00000118111.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000130555.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3	ENSMUST00000151528.8|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr16_+_16887991_16888079	0.4729174996279479	Gli3_Zic1	ENSMUST00000232258.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr7_+_127846121_127846165	0.4663835130514859	Gli3_Zic1	ENSMUST00000167965.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr1_+_17672117_17672137	0.4633385000206983	Gli3_Zic1	ENSMUST00000088476.4|Pi15|ENSMUSG00000067780.4|peptidase inhibitor 15
mm39_v1_chr12_+_33197692_33197715	0.45593873449452016	Gli3_Zic1	ENSMUST00000077456.13|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1	ENSMUST00000110824.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr13_+_54519161_54519173	0.44920771928631065	Gli3_Zic1	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr1_+_55127110_55127291	0.4488928971737681	Gli3_Zic1	ENSMUST00000075242.7|Hspe1|ENSMUSG00000073676.5|heat shock protein 1 (chaperonin 10)
mm39_v1_chr5_-_125135434_125135475	0.44440614977492426	Gli3_Zic1	ENSMUST00000134404.6|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000199561.2|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2
mm39_v1_chr11_-_98040377_98040446	0.43957020206769304	Gli3_Zic1	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr19_+_5524933_5524966	0.43584276195150523	Gli3_Zic1	ENSMUST00000236518.2|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm39_v1_chr11_+_92989229_92989264	0.42858243491690945	Gli3_Zic1	ENSMUST00000107859.8|Car10|ENSMUSG00000056158.15|carbonic anhydrase 10	ENSMUST00000107861.8|Car10|ENSMUSG00000056158.15|carbonic anhydrase 10	ENSMUST00000042943.13|Car10|ENSMUSG00000056158.15|carbonic anhydrase 10	ENSMUST00000107858.9|Car10|ENSMUSG00000056158.15|carbonic anhydrase 10
mm39_v1_chr6_+_17463819_17463833	0.4258353589229668	Gli3_Zic1	ENSMUST00000140070.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr12_+_33197776_33197819	0.42322777601842027	Gli3_Zic1	ENSMUST00000125192.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1	ENSMUST00000136644.8|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr16_-_85347305_85347321	0.4083509194626779	Gli3_Zic1	ENSMUST00000175700.8|Cyyr1|ENSMUSG00000041134.16|cysteine and tyrosine-rich protein 1	ENSMUST00000114174.3|Cyyr1|ENSMUSG00000041134.16|cysteine and tyrosine-rich protein 1
mm39_v1_chr4_-_148215135_148215164	0.4011234158420932	Gli3_Zic1	ENSMUST00000030862.5|Draxin|ENSMUSG00000029005.5|dorsal inhibitory axon guidance protein
mm39_v1_chr7_+_24967094_24967148	0.3960257687637063	Gli3_Zic1	ENSMUST00000169266.8|Cic|ENSMUSG00000005442.14|capicua transcriptional repressor
mm39_v1_chr12_+_33197753_33197769	0.3871775476293076	Gli3_Zic1	ENSMUST00000146040.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr2_-_89623963_89623963	0.38613399203848897	Gli3_Zic1	ENSMUST00000216587.2|Olfr1254|ENSMUSG00000075074.4|olfactory receptor 1254	ENSMUST00000111523.3|Olfr1254|ENSMUSG00000075074.4|olfactory receptor 1254
mm39_v1_chr17_-_66079629_66079644	0.3856287239332644	Gli3_Zic1	ENSMUST00000233258.2|Rab31|ENSMUSG00000056515.10|RAB31, member RAS oncogene family
mm39_v1_chr10_-_98962187_98962187	0.3846882666341244	Gli3_Zic1	ENSMUST00000060761.7|Phxr2|ENSMUSG00000055108.7|per-hexamer repeat gene 2
mm39_v1_chr10_-_22025169_22025169	0.37816699585428004	Gli3_Zic1	ENSMUST00000179054.8|E030030I06Rik|ENSMUSG00000097327.8|RIKEN cDNA E030030I06 gene	ENSMUST00000069372.7|E030030I06Rik|ENSMUSG00000097327.8|RIKEN cDNA E030030I06 gene
mm39_v1_chr4_-_126096112_126096193	0.3731112702512348	Gli3_Zic1	ENSMUST00000142125.2|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3	ENSMUST00000106141.3|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
mm39_v1_chr17_-_45046499_45046597	0.36734980095962333	Gli3_Zic1	ENSMUST00000162373.8|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2	ENSMUST00000162878.8|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr3_+_105811712_105811743	0.3631814458598591	Gli3_Zic1	ENSMUST00000000574.3|Adora3|ENSMUSG00000000562.6|adenosine A3 receptor
mm39_v1_chr13_+_55097200_55097293	0.3628638690961461	Gli3_Zic1	ENSMUST00000026994.14|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A	ENSMUST00000109994.9|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A
mm39_v1_chr6_-_24664959_24665039	0.35253475288277464	Gli3_Zic1	ENSMUST00000041737.8|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor	ENSMUST00000031695.15|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor
mm39_v1_chr7_+_29483383_29483512	0.3440162856734796	Gli3_Zic1	ENSMUST00000032803.12|Zfp30|ENSMUSG00000047473.15|zinc finger protein 30	ENSMUST00000122387.2|Zfp30|ENSMUSG00000047473.15|zinc finger protein 30
mm39_v1_chr11_-_58221145_58221182	0.33711050092180855	Gli3_Zic1	ENSMUST00000186859.2|Zfp672|ENSMUSG00000049755.15|zinc finger protein 672	ENSMUST00000065533.3|Zfp672|ENSMUSG00000049755.15|zinc finger protein 672
mm39_v1_chr1_-_125839897_125839951	0.33641865926757325	Gli3_Zic1	ENSMUST00000159417.2|Lypd1|ENSMUSG00000026344.10|Ly6/Plaur domain containing 1
mm39_v1_chr17_-_24428351_24428505	0.3356398202587444	Gli3_Zic1	ENSMUST00000024931.6|Ntn3|ENSMUSG00000117406.2|netrin 3
mm39_v1_chr3_+_88049633_88049790	0.33145755733981475	Gli3_Zic1	ENSMUST00000001455.13|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D	ENSMUST00000119251.8|Mef2d|ENSMUSG00000001419.18|myocyte enhancer factor 2D
mm39_v1_chr6_+_30738043_30738058	0.32730925982884973	Gli3_Zic1	ENSMUST00000163949.9|Mest|ENSMUSG00000051855.16|mesoderm specific transcript	ENSMUST00000124665.3|Mest|ENSMUSG00000051855.16|mesoderm specific transcript
mm39_v1_chr11_+_77873535_77873649	0.325934152102252	Gli3_Zic1	ENSMUST00000108360.8|Phf12|ENSMUSG00000037791.16|PHD finger protein 12	ENSMUST00000049167.14|Phf12|ENSMUSG00000037791.16|PHD finger protein 12
mm39_v1_chr4_+_12089373_12089441	0.32526407197064555	Gli3_Zic1	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
mm39_v1_chr17_+_15261896_15261935	0.3223951516891889	Gli3_Zic1	ENSMUST00000226599.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation	ENSMUST00000228518.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation	ENSMUST00000226213.2|Ermard|ENSMUSG00000036552.20|ER membrane associated RNA degradation
mm39_v1_chr5_+_30745447_30745514	0.3205415043875475	Gli3_Zic1	ENSMUST00000066295.5|Kcnk3|ENSMUSG00000049265.9|potassium channel, subfamily K, member 3
mm39_v1_chr19_-_12147438_12147476	0.31828652282316205	Gli3_Zic1	ENSMUST00000207679.3|Olfr1555-ps1|ENSMUSG00000108889.3|olfactory receptor 1555, pseudogene 1	ENSMUST00000219261.2|Olfr1555-ps1|ENSMUSG00000108889.3|olfactory receptor 1555, pseudogene 1
mm39_v1_chr3_+_45332831_45332862	0.3166646848442835	Gli3_Zic1	ENSMUST00000193252.2|Pcdh10|ENSMUSG00000049100.16|protocadherin 10	ENSMUST00000171554.8|Pcdh10|ENSMUSG00000049100.16|protocadherin 10	ENSMUST00000166126.7|Pcdh10|ENSMUSG00000049100.16|protocadherin 10	ENSMUST00000170695.4|Pcdh10|ENSMUSG00000049100.16|protocadherin 10
mm39_v1_chr13_+_56586156_56586182	0.31645739985465976	Gli3_Zic1	ENSMUST00000021971.6|Slc25a48|ENSMUSG00000021509.6|solute carrier family 25, member 48
mm39_v1_chr13_-_63579551_63579570	0.3149904330497485	Gli3_Zic1	ENSMUST00000073029.13|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr15_+_78784043_78784103	0.31141340224951763	Gli3_Zic1	ENSMUST00000001226.11|Sh3bp1|ENSMUSG00000022436.17|SH3-domain binding protein 1
mm39_v1_chr18_-_78185334_78185369	0.3102592616014981	Gli3_Zic1	ENSMUST00000160639.2|Slc14a1|ENSMUSG00000059336.15|solute carrier family 14 (urea transporter), member 1
mm39_v1_chr11_+_69656797_69656854	0.3096761013909808	Gli3_Zic1	ENSMUST00000108642.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4	ENSMUST00000156932.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4
mm39_v1_chr5_+_93241385_93241430	0.30738740091526917	Gli3_Zic1	ENSMUST00000201421.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202415.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202217.3|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr7_+_24048613_24048627	0.3072779518998945	Gli3_Zic1	ENSMUST00000032683.6|Lypd5|ENSMUSG00000030484.6|Ly6/Plaur domain containing 5
mm39_v1_chr9_-_89505178_89505178	0.30609196301479974	Gli3_Zic1	ENSMUST00000044491.13|Minar1|ENSMUSG00000039313.15|membrane integral NOTCH2 associated receptor 1
mm39_v1_chr12_+_4284009_4284067	0.30145313466719426	Gli3_Zic1	ENSMUST00000179139.3|Ptrhd1|ENSMUSG00000096199.3|peptidyl-tRNA hydrolase domain containing 1
mm39_v1_chr10_+_40505985_40506073	0.300897063388972	Gli3_Zic1	ENSMUST00000019977.8|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000214102.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000213503.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000213442.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase	ENSMUST00000216830.2|Ddo|ENSMUSG00000063428.9|D-aspartate oxidase
mm39_v1_chr1_+_166828982_166828999	0.29731517583448785	Gli3_Zic1	ENSMUST00000165874.8|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B	ENSMUST00000190081.7|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B
mm39_v1_chr16_-_90808196_90808319	0.29088385074162837	Gli3_Zic1	ENSMUST00000121759.8|Synj1|ENSMUSG00000022973.19|synaptojanin 1
mm39_v1_chr10_-_128245501_128245743	0.2905268573137826	Gli3_Zic1	ENSMUST00000172348.8|Nabp2|ENSMUSG00000025374.14|nucleic acid binding protein 2	ENSMUST00000166608.8|Nabp2|ENSMUSG00000025374.14|nucleic acid binding protein 2	ENSMUST00000164199.8|Nabp2|ENSMUSG00000025374.14|nucleic acid binding protein 2	ENSMUST00000171370.2|Nabp2|ENSMUSG00000025374.14|nucleic acid binding protein 2	ENSMUST00000026439.14|Nabp2|ENSMUSG00000025374.14|nucleic acid binding protein 2
mm39_v1_chr16_+_20335712_20335823	0.2863596267410163	Gli3_Zic1	ENSMUST00000003318.13|Dvl3|ENSMUSG00000003233.13|dishevelled segment polarity protein 3	ENSMUST00000171572.9|Dvl3|ENSMUSG00000003233.13|dishevelled segment polarity protein 3
mm39_v1_chr15_-_100567377_100567411	0.2858316676389904	Gli3_Zic1	ENSMUST00000182814.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000238935.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182068.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182574.2|Bin2|ENSMUSG00000098112.9|bridging integrator 2	ENSMUST00000182775.8|Bin2|ENSMUSG00000098112.9|bridging integrator 2
mm39_v1_chr2_-_150510116_150510178	0.28440855443561824	Gli3_Zic1	ENSMUST00000028944.4|Acss1|ENSMUSG00000027452.12|acyl-CoA synthetase short-chain family member 1
mm39_v1_chr11_-_23720953_23721028	0.28386036783266544	Gli3_Zic1	ENSMUST00000102864.5|Rel|ENSMUSG00000020275.10|reticuloendotheliosis oncogene
mm39_v1_chr12_+_11316101_11316179	0.28295654259385916	Gli3_Zic1	ENSMUST00000218866.2|Smc6|ENSMUSG00000020608.8|structural maintenance of chromosomes 6
mm39_v1_chr7_+_12615091_12615132	0.2816050028331791	Gli3_Zic1	ENSMUST00000144578.2|Zfp128|ENSMUSG00000060397.7|zinc finger protein 128
mm39_v1_chr2_-_32271833_32271920	0.28160335928110114	Gli3_Zic1	ENSMUST00000146423.2|1110008P14Rik|ENSMUSG00000039195.5|RIKEN cDNA 1110008P14 gene
mm39_v1_chr11_-_102446947_102447025	0.27941543505227934	Gli3_Zic1	ENSMUST00000143842.2|Gpatch8|ENSMUSG00000034621.15|G patch domain containing 8
mm39_v1_chr4_-_108637700_108637957	0.2787125214219252	Gli3_Zic1	ENSMUST00000106658.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr7_+_127084283_127084393	0.2785184281438211	Gli3_Zic1	ENSMUST00000048896.8|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr14_+_57124028_57124110	0.2772033557618102	Gli3_Zic1	ENSMUST00000223669.2|Zmym2|ENSMUSG00000021945.10|zinc finger, MYM-type 2
mm39_v1_chr11_+_70538083_70538120	0.27601565955090374	Gli3_Zic1	ENSMUST00000037534.8|Rnf167|ENSMUSG00000040746.16|ring finger protein 167
mm39_v1_chr9_+_100956145_100956165	0.2748407258175587	Gli3_Zic1	ENSMUST00000189616.2|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chr19_-_6134703_6134723	0.27413433201797033	Gli3_Zic1	ENSMUST00000161548.8|Zfpl1|ENSMUSG00000024792.10|zinc finger like protein 1
mm39_v1_chr5_+_93241287_93241310	0.274066388434312	Gli3_Zic1	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr2_+_174485327_174485327	0.2673042583036067	Gli3_Zic1	ENSMUST00000059452.6|Zfp831|ENSMUSG00000050600.6|zinc finger protein 831
mm39_v1_chr9_+_100525807_100525823	0.26527188470960394	Gli3_Zic1	ENSMUST00000133388.2|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr5_-_136275407_136275412	0.26447409699316604	Gli3_Zic1	ENSMUST00000196245.2|Sh2b2|ENSMUSG00000005057.14|SH2B adaptor protein 2
mm39_v1_chrX_+_100342813_100342824	0.2591130797645333	Gli3_Zic1	ENSMUST00000065858.3|Nlgn3|ENSMUSG00000031302.17|neuroligin 3
mm39_v1_chr10_-_127177729_127177843	0.25846515506406276	Gli3_Zic1	ENSMUST00000026474.5|Gli1|ENSMUSG00000025407.8|GLI-Kruppel family member GLI1	ENSMUST00000219671.2|Gli1|ENSMUSG00000025407.8|GLI-Kruppel family member GLI1
mm39_v1_chr12_-_113324852_113324852	0.25753911531299045	Gli3_Zic1	ENSMUST00000223179.2|Ighg3|ENSMUSG00000076615.5|Immunoglobulin heavy constant gamma 3	ENSMUST00000103423.3|Ighg3|ENSMUSG00000076615.5|Immunoglobulin heavy constant gamma 3
mm39_v1_chr9_+_108394005_108394168	0.25742666348915627	Gli3_Zic1	ENSMUST00000195563.6|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1
mm39_v1_chr5_+_3391477_3391488	0.2558451981922407	Gli3_Zic1	ENSMUST00000199156.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr2_-_164753480_164753677	0.246804276309511	Gli3_Zic1	ENSMUST00000041361.14|Zfp335|ENSMUSG00000039834.18|zinc finger protein 335
mm39_v1_chr2_-_90410922_90410991	0.24375843900887778	Gli3_Zic1	ENSMUST00000168621.3|Ptprj|ENSMUSG00000025314.17|protein tyrosine phosphatase, receptor type, J
mm39_v1_chrX_-_73009933_73009982	0.24008305544547393	Gli3_Zic1	ENSMUST00000114372.3|Hcfc1|ENSMUSG00000031386.15|host cell factor C1	ENSMUST00000033761.13|Hcfc1|ENSMUSG00000031386.15|host cell factor C1
mm39_v1_chr19_+_42034231_42034336	0.23742636849127718	Gli3_Zic1	ENSMUST00000172244.8|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1	ENSMUST00000081714.5|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1
mm39_v1_chr2_+_15060051_15060222	0.23306129227478967	Gli3_Zic1	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr8_+_121854566_121854679	0.231804861814702	Gli3_Zic1	ENSMUST00000181609.2|Foxl1|ENSMUSG00000097084.2|forkhead box L1
mm39_v1_chr4_-_16163615_16163647	0.23105903296657004	Gli3_Zic1	ENSMUST00000037035.12|Ripk2|ENSMUSG00000041135.16|receptor (TNFRSF)-interacting serine-threonine kinase 2
mm39_v1_chr4_-_108637979_108638000	0.23029869499377462	Gli3_Zic1	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr17_-_24424456_24424536	0.2291794642779441	Gli3_Zic1	ENSMUST00000201583.2|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000202925.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000167791.9|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201960.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000040474.11|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201089.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201301.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000201805.4|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000168410.9|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24	ENSMUST00000097376.10|Tbc1d24|ENSMUSG00000036473.17|TBC1 domain family, member 24
mm39_v1_chr4_+_42949814_42949924	0.22894318114944573	Gli3_Zic1	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr2_-_168072295_168072304	0.22813339945516087	Gli3_Zic1	ENSMUST00000154111.8|Dpm1|ENSMUSG00000078919.11|dolichol-phosphate (beta-D) mannosyltransferase 1
mm39_v1_chr2_-_104542467_104542525	0.22746724679332483	Gli3_Zic1	ENSMUST00000111118.8|Tcp11l1|ENSMUSG00000027175.11|t-complex 11 like 1	ENSMUST00000028597.4|Tcp11l1|ENSMUSG00000027175.11|t-complex 11 like 1
mm39_v1_chr12_-_113294138_113294149	0.22665132348975917	Gli3_Zic1	ENSMUST00000194304.6|Ighg1|ENSMUSG00000076614.8|immunoglobulin heavy constant gamma 1 (G1m marker)	ENSMUST00000103420.3|Ighg1|ENSMUSG00000076614.8|immunoglobulin heavy constant gamma 1 (G1m marker)
mm39_v1_chr1_-_89942299_89942388	0.224942310910416	Gli3_Zic1	ENSMUST00000086882.8|Asb18|ENSMUSG00000067081.14|ankyrin repeat and SOCS box-containing 18	ENSMUST00000097656.10|Asb18|ENSMUSG00000067081.14|ankyrin repeat and SOCS box-containing 18
mm39_v1_chr1_-_155848917_155849012	0.22406505616875713	Gli3_Zic1	ENSMUST00000138762.8|Cep350|ENSMUSG00000033671.19|centrosomal protein 350
mm39_v1_chr6_-_116084810_116084841	0.21543336183136264	Gli3_Zic1	ENSMUST00000204353.3|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr9_+_27702243_27702299	0.21407115890101222	Gli3_Zic1	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chr2_-_156977032_156977185	0.2136410457376125	Gli3_Zic1	ENSMUST00000139263.8|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000109549.3|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000088523.11|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000057725.10|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1
mm39_v1_chr15_+_78783867_78783975	0.21128163024397317	Gli3_Zic1	ENSMUST00000134703.8|Gm49510|ENSMUSG00000116069.2|predicted gene, 49510	ENSMUST00000061239.14|Sh3bp1|ENSMUSG00000022436.17|SH3-domain binding protein 1	ENSMUST00000109698.9|Sh3bp1|ENSMUSG00000022436.17|SH3-domain binding protein 1
mm39_v1_chr13_-_49473695_49473787	0.21012663401754123	Gli3_Zic1	ENSMUST00000110086.2|Fgd3|ENSMUSG00000037946.12|FYVE, RhoGEF and PH domain containing 3
mm39_v1_chrX_-_165368675_165368734	0.20993978600681854	Gli3_Zic1	ENSMUST00000000412.3|Egfl6|ENSMUSG00000000402.3|EGF-like-domain, multiple 6
mm39_v1_chr9_-_54956032_54956076	0.208774198773502	Gli3_Zic1	ENSMUST00000034854.8|Chrnb4|ENSMUSG00000035200.8|cholinergic receptor, nicotinic, beta polypeptide 4
mm39_v1_chr16_+_20335825_20335881	0.20244132139283993	Gli3_Zic1	ENSMUST00000171774.2|Dvl3|ENSMUSG00000003233.13|dishevelled segment polarity protein 3
mm39_v1_chr7_-_19504446_19504472	0.1982388899539483	Gli3_Zic1	ENSMUST00000003061.14|Bcam|ENSMUSG00000002980.15|basal cell adhesion molecule
mm39_v1_chr9_+_113570580_113570592	0.19430172040314608	Gli3_Zic1	ENSMUST00000216817.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr15_-_43733389_43733456	0.18918277420550628	Gli3_Zic1	ENSMUST00000067469.6|Tmem74|ENSMUSG00000054409.6|transmembrane protein 74
mm39_v1_chr17_-_15198955_15199052	0.1859996264456322	Gli3_Zic1	ENSMUST00000231584.2|Dynlt2a3|ENSMUSG00000116780.2|dynein light chain Tctex-type 2A3	ENSMUST00000097399.6|Dynlt2a3|ENSMUSG00000116780.2|dynein light chain Tctex-type 2A3	ENSMUST00000232173.2|Dynlt2a3|ENSMUSG00000116780.2|dynein light chain Tctex-type 2A3
mm39_v1_chr11_-_116545071_116545151	0.18466270745275196	Gli3_Zic1	ENSMUST00000021166.6|Cygb|ENSMUSG00000020810.6|cytoglobin
mm39_v1_chr7_-_100306160_100306310	0.18258513776651353	Gli3_Zic1	ENSMUST00000107046.8|Plekhb1|ENSMUSG00000030701.18|pleckstrin homology domain containing, family B (evectins) member 1	ENSMUST00000107045.9|Plekhb1|ENSMUSG00000030701.18|pleckstrin homology domain containing, family B (evectins) member 1	ENSMUST00000139708.9|Plekhb1|ENSMUSG00000030701.18|pleckstrin homology domain containing, family B (evectins) member 1
mm39_v1_chr7_+_4693603_4693672	0.18255735237127763	Gli3_Zic1	ENSMUST00000120836.8|Brsk1|ENSMUSG00000035390.17|BR serine/threonine kinase 1
mm39_v1_chr11_-_118139312_118139330	0.18206824092474183	Gli3_Zic1	ENSMUST00000100181.11|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr1_+_87254729_87254788	0.18124173579220038	Gli3_Zic1	ENSMUST00000172794.8|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2	ENSMUST00000164992.9|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2	ENSMUST00000173173.8|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr6_+_124986224_124986282	0.18120316059074704	Gli3_Zic1	ENSMUST00000112427.8|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chr1_+_166829001_166829040	0.17885709040913206	Gli3_Zic1	ENSMUST00000126198.3|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B
mm39_v1_chr7_-_4781140_4781143	0.17809624508829658	Gli3_Zic1	ENSMUST00000094892.12|Il11|ENSMUSG00000004371.16|interleukin 11
mm39_v1_chr5_+_117457356_117457393	0.17736519555686095	Gli3_Zic1	ENSMUST00000086464.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr9_+_108394269_108394318	0.1752823041799061	Gli3_Zic1	ENSMUST00000195513.6|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1	ENSMUST00000193258.6|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1	ENSMUST00000112155.9|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1	ENSMUST00000006851.15|Qrich1|ENSMUSG00000006673.15|glutamine-rich 1
mm39_v1_chr10_-_115151451_115151531	0.17482123328280005	Gli3_Zic1	ENSMUST00000020343.9|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family	ENSMUST00000218831.2|Rab21|ENSMUSG00000020132.11|RAB21, member RAS oncogene family
mm39_v1_chr6_+_124986078_124986142	0.17446467003953198	Gli3_Zic1	ENSMUST00000054553.11|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chr11_+_101066867_101066867	0.17420993278199212	Gli3_Zic1	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr19_-_32365862_32365912	0.17206285870193336	Gli3_Zic1	ENSMUST00000099514.10|Sgms1|ENSMUSG00000040451.19|sphingomyelin synthase 1
mm39_v1_chr5_-_145077048_145077091	0.1707281209421717	Gli3_Zic1	ENSMUST00000031627.9|Pdap1|ENSMUSG00000029623.15|PDGFA associated protein 1
mm39_v1_chr11_+_69891398_69891465	0.16991039194399016	Gli3_Zic1	ENSMUST00000019362.15|Dvl2|ENSMUSG00000020888.17|dishevelled segment polarity protein 2	ENSMUST00000190940.2|Dvl2|ENSMUSG00000020888.17|dishevelled segment polarity protein 2
mm39_v1_chr17_+_17669082_17669150	0.16711908076783502	Gli3_Zic1	ENSMUST00000140134.2|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr2_-_160714904_160714929	0.1664370251231787	Gli3_Zic1	ENSMUST00000109460.8|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3	ENSMUST00000127201.2|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr19_-_5135510_5135559	0.16559748999675758	Gli3_Zic1	ENSMUST00000140389.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000151413.2|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A	ENSMUST00000077066.8|Tmem151a|ENSMUSG00000061451.14|transmembrane protein 151A
mm39_v1_chr1_+_128031055_128031097	0.16533266843005912	Gli3_Zic1	ENSMUST00000188381.7|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1	ENSMUST00000187900.7|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1	ENSMUST00000036288.11|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1
mm39_v1_chr2_-_119378108_119378108	0.16425572973659827	Gli3_Zic1	ENSMUST00000060009.9|Exd1|ENSMUSG00000048647.10|exonuclease 3'-5' domain containing 1
mm39_v1_chr7_+_4693759_4693927	0.16342154977291265	Gli3_Zic1	ENSMUST00000048248.9|Brsk1|ENSMUSG00000035390.17|BR serine/threonine kinase 1
mm39_v1_chr16_-_46317318_46317349	0.1623398992202128	Gli3_Zic1	ENSMUST00000023335.13|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3	ENSMUST00000023334.15|Nectin3|ENSMUSG00000022656.16|nectin cell adhesion molecule 3
mm39_v1_chr9_-_113855776_113855833	0.15907646287791324	Gli3_Zic1	ENSMUST00000035090.14|Fbxl2|ENSMUSG00000032507.16|F-box and leucine-rich repeat protein 2
mm39_v1_chr1_-_133834790_133834910	0.15902644815150027	Gli3_Zic1	ENSMUST00000149380.8|Optc|ENSMUSG00000010311.16|opticin	ENSMUST00000124051.9|Optc|ENSMUSG00000010311.16|opticin
mm39_v1_chr11_+_79230618_79230719	0.15734102261902397	Gli3_Zic1	ENSMUST00000219057.2|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000108251.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000071325.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1
mm39_v1_chr6_+_17463925_17464048	0.1556055637256633	Gli3_Zic1	ENSMUST00000115442.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr10_-_18891095_18891158	0.15296565494367373	Gli3_Zic1	ENSMUST00000019997.11|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr3_-_115800989_115801060	0.15257224598371302	Gli3_Zic1	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr17_+_35354148_35354159	0.15122719340239693	Gli3_Zic1	ENSMUST00000166426.9|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000025250.14|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr8_+_107662352_107662410	0.1511790775383345	Gli3_Zic1	ENSMUST00000212524.2|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2	ENSMUST00000047425.5|Sntb2|ENSMUSG00000041308.7|syntrophin, basic 2
mm39_v1_chr4_-_41275091_41275144	0.14883473447563425	Gli3_Zic1	ENSMUST00000030143.13|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2	ENSMUST00000108068.8|Ubap2|ENSMUSG00000028433.15|ubiquitin-associated protein 2
mm39_v1_chr9_-_45817666_45817750	0.1475561703216262	Gli3_Zic1	ENSMUST00000161187.8|Rnf214|ENSMUSG00000042790.17|ring finger protein 214
mm39_v1_chr5_+_117457126_117457185	0.14564062025579758	Gli3_Zic1	ENSMUST00000111967.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr2_-_35994072_35994085	0.14514882435917995	Gli3_Zic1	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr17_-_57181420_57181460	0.14477658400237173	Gli3_Zic1	ENSMUST00000043062.5|Acsbg2|ENSMUSG00000024207.9|acyl-CoA synthetase bubblegum family member 2
mm39_v1_chr3_+_138058139_138058139	0.1431141389740489	Gli3_Zic1	ENSMUST00000090166.5|Adh6b|ENSMUSG00000074206.8|alcohol dehydrogenase 6B (class V)
mm39_v1_chr19_+_6097111_6097134	0.14235483343612446	Gli3_Zic1	ENSMUST00000025723.9|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr7_+_5059703_5059741	0.1418828866138221	Gli3_Zic1	ENSMUST00000208042.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106	ENSMUST00000207974.2|Ccdc106|ENSMUSG00000035228.16|coiled-coil domain containing 106
mm39_v1_chr11_-_69435382_69435382	0.1405930062784868	Gli3_Zic1	ENSMUST00000035539.12|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chr8_+_18645144_18645158	0.13887855379770858	Gli3_Zic1	ENSMUST00000039412.15|Mcph1|ENSMUSG00000039842.16|microcephaly, primary autosomal recessive 1
mm39_v1_chr5_-_142803405_142803422	0.13763613328881102	Gli3_Zic1	ENSMUST00000151477.8|Tnrc18|ENSMUSG00000039477.17|trinucleotide repeat containing 18
mm39_v1_chr1_+_87254719_87254728	0.13596422511385126	Gli3_Zic1	ENSMUST00000027475.15|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr12_+_59113659_59113670	0.1354880880570315	Gli3_Zic1	ENSMUST00000021381.6|Pnn|ENSMUSG00000020994.6|pinin
mm39_v1_chr4_+_134879807_134879865	0.1346919916025544	Gli3_Zic1	ENSMUST00000119564.2|Runx3|ENSMUSG00000070691.11|runt related transcription factor 3
mm39_v1_chr6_+_90346547_90346633	0.13348539138517887	Gli3_Zic1	ENSMUST00000045740.8|Zxdc|ENSMUSG00000034430.17|ZXD family zinc finger C	ENSMUST00000203493.2|Zxdc|ENSMUSG00000034430.17|ZXD family zinc finger C
mm39_v1_chr6_+_21985902_21985971	0.13198198734776626	Gli3_Zic1	ENSMUST00000115383.9|Cped1|ENSMUSG00000062980.16|cadherin-like and PC-esterase domain containing 1
mm39_v1_chr12_+_9080014_9080045	0.13097444034188457	Gli3_Zic1	ENSMUST00000219488.2|Ttc32|ENSMUSG00000066637.3|tetratricopeptide repeat domain 32	ENSMUST00000219470.2|Ttc32|ENSMUSG00000066637.3|tetratricopeptide repeat domain 32
mm39_v1_chr13_+_74498418_74498428	0.1286953236813447	Gli3_Zic1	ENSMUST00000022063.14|Ccdc127|ENSMUSG00000021578.18|coiled-coil domain containing 127
mm39_v1_chr11_-_86435579_86435631	0.12633287771857216	Gli3_Zic1	ENSMUST00000138810.3|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000058286.9|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000154617.8|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1
mm39_v1_chr11_+_53410552_53410627	0.12582951029198366	Gli3_Zic1	ENSMUST00000108987.8|Septin8|ENSMUSG00000018398.19|septin 8	ENSMUST00000121334.8|Septin8|ENSMUSG00000018398.19|septin 8	ENSMUST00000117061.8|Septin8|ENSMUSG00000018398.19|septin 8
mm39_v1_chr10_+_22520910_22521008	0.12560685375492234	Gli3_Zic1	ENSMUST00000042261.5|Slc2a12|ENSMUSG00000037490.6|solute carrier family 2 (facilitated glucose transporter), member 12
mm39_v1_chr12_-_11315755_11315819	0.12541458090074878	Gli3_Zic1	ENSMUST00000166117.4|Gen1|ENSMUSG00000051235.11|GEN1, Holliday junction 5' flap endonuclease	ENSMUST00000219600.2|Gen1|ENSMUSG00000051235.11|GEN1, Holliday junction 5' flap endonuclease	ENSMUST00000218487.2|Gen1|ENSMUSG00000051235.11|GEN1, Holliday junction 5' flap endonuclease
mm39_v1_chr5_-_124563611_124563631	0.12401329284941154	Gli3_Zic1	ENSMUST00000198420.5|Sbno1|ENSMUSG00000038095.16|strawberry notch 1
mm39_v1_chr11_-_54140462_54140493	0.12390026679435132	Gli3_Zic1	ENSMUST00000019060.6|Csf2|ENSMUSG00000018916.6|colony stimulating factor 2 (granulocyte-macrophage)
mm39_v1_chr5_-_123859070_123859125	0.12309235997667145	Gli3_Zic1	ENSMUST00000031376.12|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr17_+_35354655_35354774	0.12236550901919845	Gli3_Zic1	ENSMUST00000174478.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000174281.9|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173550.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr11_-_70120503_70120592	0.12103902576192986	Gli3_Zic1	ENSMUST00000153449.2|Bcl6b|ENSMUSG00000000317.12|B cell CLL/lymphoma 6, member B	ENSMUST00000000326.12|Bcl6b|ENSMUSG00000000317.12|B cell CLL/lymphoma 6, member B
mm39_v1_chr6_+_124986193_124986216	0.1209922852075116	Gli3_Zic1	ENSMUST00000112428.8|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chr3_+_135144304_135144335	0.11966042676889477	Gli3_Zic1	ENSMUST00000198685.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3	ENSMUST00000197859.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr6_-_119307685_119307761	0.11952250412638044	Gli3_Zic1	ENSMUST00000112756.8|Lrtm2|ENSMUSG00000055003.15|leucine-rich repeats and transmembrane domains 2	ENSMUST00000068351.14|Lrtm2|ENSMUSG00000055003.15|leucine-rich repeats and transmembrane domains 2
mm39_v1_chr10_-_63926044_63926076	0.11938803641977767	Gli3_Zic1	ENSMUST00000105439.2|Lrrtm3|ENSMUSG00000042846.9|leucine rich repeat transmembrane neuronal 3
mm39_v1_chr9_+_118335294_118335357	0.11843475729397035	Gli3_Zic1	ENSMUST00000084820.6|Golga4|ENSMUSG00000038708.11|golgi autoantigen, golgin subfamily a, 4
mm39_v1_chr5_-_5315968_5316292	0.11836405234404651	Gli3_Zic1	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr2_-_77000936_77000990	0.11833170118106336	Gli3_Zic1	ENSMUST00000164114.9|Ccdc141|ENSMUSG00000044033.17|coiled-coil domain containing 141	ENSMUST00000049544.14|Ccdc141|ENSMUSG00000044033.17|coiled-coil domain containing 141
mm39_v1_chr9_+_100525501_100525594	0.11829179739782877	Gli3_Zic1	ENSMUST00000146312.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1	ENSMUST00000129269.8|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr14_+_84680993_84681009	0.11819674732192893	Gli3_Zic1	ENSMUST00000071370.7|Pcdh17|ENSMUSG00000035566.8|protocadherin 17
mm39_v1_chr5_-_106606032_106606032	0.116888239503174	Gli3_Zic1	ENSMUST00000086795.8|Barhl2|ENSMUSG00000034384.12|BarH like homeobox 2
mm39_v1_chr15_+_98972850_98972886	0.11648673098329124	Gli3_Zic1	ENSMUST00000039665.8|Troap|ENSMUSG00000032783.10|trophinin associated protein
mm39_v1_chr3_+_94385602_94385652	0.11553191980818084	Gli3_Zic1	ENSMUST00000199884.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3	ENSMUST00000198316.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3	ENSMUST00000197558.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr13_+_118851214_118851238	0.1130741287793962	Gli3_Zic1	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr4_-_70453140_70453224	0.11302431215146536	Gli3_Zic1	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr9_+_21527526_21527578	0.112087823859017	Gli3_Zic1	ENSMUST00000174008.8|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm39_v1_chr2_-_160714473_160714542	0.11164008474148432	Gli3_Zic1	ENSMUST00000103111.9|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr19_-_12209960_12209960	0.11135631589315542	Gli3_Zic1	ENSMUST00000207710.3|Olfr1432|ENSMUSG00000109022.3|olfactory receptor 1432
mm39_v1_chr17_+_35354172_35354221	0.11036660558398742	Gli3_Zic1	ENSMUST00000172571.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173491.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr17_+_35354430_35354543	0.11024916577137384	Gli3_Zic1	ENSMUST00000173535.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173952.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr3_+_95532282_95532332	0.10833421628793623	Gli3_Zic1	ENSMUST00000058230.13|Ensa|ENSMUSG00000038619.13|endosulfine alpha	ENSMUST00000037983.6|Ensa|ENSMUSG00000038619.13|endosulfine alpha
mm39_v1_chr16_+_43323970_43324005	0.10644686327426754	Gli3_Zic1	ENSMUST00000126100.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000123047.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000156981.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr17_-_25394445_25394445	0.10604635920507234	Gli3_Zic1	ENSMUST00000224277.2|Percc1|ENSMUSG00000114245.2|proline and glutamate rich with coiled coil 1
mm39_v1_chr14_-_100521888_100521934	0.10575151571835759	Gli3_Zic1	ENSMUST00000226774.2|Klf12|ENSMUSG00000072294.6|Kruppel-like factor 12
mm39_v1_chr8_-_106363982_106364025	0.10554787017206595	Gli3_Zic1	ENSMUST00000182863.2|Gm5914|ENSMUSG00000098120.2|predicted gene 5914	ENSMUST00000194091.6|Agrp|ENSMUSG00000005705.11|agouti related neuropeptide
mm39_v1_chr8_+_3543131_3543212	0.10409150083333583	Gli3_Zic1	ENSMUST00000061508.8|Zfp358|ENSMUSG00000047264.9|zinc finger protein 358	ENSMUST00000207318.2|Zfp358|ENSMUSG00000047264.9|zinc finger protein 358
mm39_v1_chr14_+_34396079_34396190	0.10404814149241431	Gli3_Zic1	ENSMUST00000169910.8|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor	ENSMUST00000090027.11|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr6_-_142647944_142647981	0.10374628930153515	Gli3_Zic1	ENSMUST00000100827.5|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	ENSMUST00000087527.11|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm39_v1_chr14_+_14475188_14475235	0.10340218953052388	Gli3_Zic1	ENSMUST00000026315.8|Dnase1l3|ENSMUSG00000025279.8|deoxyribonuclease 1-like 3
mm39_v1_chr16_+_44544634_44544689	0.10334492167932433	Gli3_Zic1	ENSMUST00000048788.14|Nepro|ENSMUSG00000036208.14|nucleolus and neural progenitor protein
mm39_v1_chr1_+_33947250_33947306	0.1026734204686779	Gli3_Zic1	ENSMUST00000183034.5|Dst|ENSMUSG00000026131.21|dystonin
mm39_v1_chr11_+_72686990_72687072	0.10168021196790757	Gli3_Zic1	ENSMUST00000069395.7|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1	ENSMUST00000172220.8|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1
mm39_v1_chr13_+_54722823_54722828	0.10123464789663493	Gli3_Zic1	ENSMUST00000026988.11|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr12_+_24548568_24548618	0.10055422439697607	Gli3_Zic1	ENSMUST00000222710.2|Taf1b|ENSMUSG00000059669.9|TATA-box binding protein associated factor, RNA polymerase I, B
mm39_v1_chr2_-_35995283_35995446	0.10031014066149115	Gli3_Zic1	ENSMUST00000112960.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112967.12|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112963.8|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr7_+_44667377_44667433	0.09956274277484896	Gli3_Zic1	ENSMUST00000044111.10|Rras|ENSMUSG00000038387.10|related RAS viral (r-ras) oncogene
mm39_v1_chr1_+_97697881_97697935	0.09835710414312143	Gli3_Zic1	ENSMUST00000112844.10|Gin1|ENSMUSG00000026333.15|gypsy retrotransposon integrase 1	ENSMUST00000112842.8|Gin1|ENSMUSG00000026333.15|gypsy retrotransposon integrase 1	ENSMUST00000027571.13|Gin1|ENSMUSG00000026333.15|gypsy retrotransposon integrase 1
mm39_v1_chr19_+_55304703_55304799	0.09827525763743208	Gli3_Zic1	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr19_+_4761181_4761286	0.09811464942361842	Gli3_Zic1	ENSMUST00000008991.8|Sptbn2|ENSMUSG00000067889.8|spectrin beta, non-erythrocytic 2
mm39_v1_chr19_+_4282487_4282534	0.0981083057938163	Gli3_Zic1	ENSMUST00000235306.2|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr17_+_15230438_15230438	0.09799350737479909	Gli3_Zic1	ENSMUST00000097395.5|Gm3435|ENSMUSG00000116895.2|predicted gene 3435
mm39_v1_chr6_+_29694181_29694247	0.09795920681056626	Gli3_Zic1	ENSMUST00000046750.14|Tspan33|ENSMUSG00000001763.15|tetraspanin 33	ENSMUST00000115250.4|Tspan33|ENSMUSG00000001763.15|tetraspanin 33
mm39_v1_chr4_+_12140263_12140317	0.09793412477632742	Gli3_Zic1	ENSMUST00000050069.9|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1	ENSMUST00000069128.8|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1
mm39_v1_chr3_+_79793237_79793309	0.09748293291755747	Gli3_Zic1	ENSMUST00000029567.9|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B
mm39_v1_chr6_+_48372586_48372623	0.09661283355759195	Gli3_Zic1	ENSMUST00000077093.7|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr8_+_93687561_93687672	0.09605895500929247	Gli3_Zic1	ENSMUST00000072939.8|Slc6a2|ENSMUSG00000055368.15|solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2
mm39_v1_chr19_+_9995557_9995597	0.09505551227852328	Gli3_Zic1	ENSMUST00000113161.10|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1	ENSMUST00000238672.2|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1	ENSMUST00000117641.8|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1
mm39_v1_chr7_-_101517874_101517907	0.09468520376723943	Gli3_Zic1	ENSMUST00000150184.2|Folr1|ENSMUSG00000001827.13|folate receptor 1 (adult)
mm39_v1_chr11_-_118139331_118139397	0.09447354570798815	Gli3_Zic1	ENSMUST00000017276.14|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr8_-_125624424_125624496	0.09393407409886188	Gli3_Zic1	ENSMUST00000098312.4|Exoc8|ENSMUSG00000074030.4|exocyst complex component 8
mm39_v1_chr5_+_3853160_3853193	0.09390486086825917	Gli3_Zic1	ENSMUST00000080085.9|Krit1|ENSMUSG00000000600.16|KRIT1, ankyrin repeat containing	ENSMUST00000200386.5|Krit1|ENSMUSG00000000600.16|KRIT1, ankyrin repeat containing
mm39_v1_chr11_-_83353787_83353897	0.09343330273955078	Gli3_Zic1	ENSMUST00000021020.13|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000119346.2|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000103209.10|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)	ENSMUST00000108137.9|Mmp28|ENSMUSG00000020682.18|matrix metallopeptidase 28 (epilysin)
mm39_v1_chr15_-_97742134_97742199	0.09294503703982844	Gli3_Zic1	ENSMUST00000119670.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7	ENSMUST00000116409.9|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr9_+_21527462_21527473	0.09275342355758522	Gli3_Zic1	ENSMUST00000034707.15|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	ENSMUST00000098948.10|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm39_v1_chr6_+_17491231_17491242	0.09237122747025783	Gli3_Zic1	ENSMUST00000080469.12|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr11_+_115921129_115921215	0.09229763571334593	Gli3_Zic1	ENSMUST00000021116.12|Unk|ENSMUSG00000020770.14|unkempt family zinc finger	ENSMUST00000106452.2|Unk|ENSMUSG00000020770.14|unkempt family zinc finger
mm39_v1_chr8_+_23629046_23629077	0.09143920439199912	Gli3_Zic1	ENSMUST00000121075.8|Ank1|ENSMUSG00000031543.19|ankyrin 1, erythroid
mm39_v1_chr2_-_28945051_28945095	0.09012701557226611	Gli3_Zic1	ENSMUST00000189711.7|Cfap77|ENSMUSG00000079502.9|cilia and flagella associated protein 77	ENSMUST00000157048.4|Cfap77|ENSMUSG00000079502.9|cilia and flagella associated protein 77
mm39_v1_chr17_+_15230597_15230597	0.08997412319505466	Gli3_Zic1	ENSMUST00000232446.2|Gm3435|ENSMUSG00000116895.2|predicted gene 3435
mm39_v1_chr9_+_100525637_100525691	0.08876348442605983	Gli3_Zic1	ENSMUST00000041418.13|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr6_-_115229128_115229166	0.08850535471759632	Gli3_Zic1	ENSMUST00000032462.9|Timp4|ENSMUSG00000030317.9|tissue inhibitor of metalloproteinase 4
mm39_v1_chr19_+_6097083_6097110	0.0872787744793619	Gli3_Zic1	ENSMUST00000134667.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr12_+_3415107_3415142	0.08717876768424915	Gli3_Zic1	ENSMUST00000220210.2|Kif3c|ENSMUSG00000020668.11|kinesin family member 3C
mm39_v1_chr12_+_3415143_3415207	0.08380174739860237	Gli3_Zic1	ENSMUST00000020999.7|Kif3c|ENSMUSG00000020668.11|kinesin family member 3C
mm39_v1_chr3_+_94385661_94385801	0.08371201158112954	Gli3_Zic1	ENSMUST00000200342.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr11_+_72889889_72889929	0.08355236649266927	Gli3_Zic1	ENSMUST00000021141.14|P2rx1|ENSMUSG00000020787.15|purinergic receptor P2X, ligand-gated ion channel, 1
mm39_v1_chr1_-_153775944_153775957	0.08261170058159092	Gli3_Zic1	ENSMUST00000123490.2|Teddm2|ENSMUSG00000045968.8|transmembrane epididymal family member 2
mm39_v1_chr2_+_181162278_181162324	0.08232400849304633	Gli3_Zic1	ENSMUST00000072334.12|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr5_-_136595205_136595230	0.08197262406969934	Gli3_Zic1	ENSMUST00000176778.8|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr6_+_149310471_149310593	0.08051795957769245	Gli3_Zic1	ENSMUST00000086829.11|Bicd1|ENSMUSG00000003452.16|BICD cargo adaptor 1	ENSMUST00000111513.9|Bicd1|ENSMUSG00000003452.16|BICD cargo adaptor 1
mm39_v1_chr5_-_123859153_123859175	0.08020899741378171	Gli3_Zic1	ENSMUST00000196282.5|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr9_+_62765362_62765420	0.08005948369563197	Gli3_Zic1	ENSMUST00000213643.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000034777.14|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000163820.3|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215870.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000214633.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215968.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4
mm39_v1_chr7_-_44702269_44702338	0.07936830971029075	Gli3_Zic1	ENSMUST00000057293.8|Prr12|ENSMUSG00000046574.9|proline rich 12
mm39_v1_chr17_+_56633040_56633097	0.0781399332942738	Gli3_Zic1	ENSMUST00000139679.8|Kdm4b|ENSMUSG00000024201.13|lysine (K)-specific demethylase 4B	ENSMUST00000025036.11|Kdm4b|ENSMUSG00000024201.13|lysine (K)-specific demethylase 4B	ENSMUST00000086835.12|Kdm4b|ENSMUSG00000024201.13|lysine (K)-specific demethylase 4B
mm39_v1_chr11_+_99755302_99755302	0.07779784116759283	Gli3_Zic1	ENSMUST00000092694.4|Gm11559|ENSMUSG00000090225.2|predicted gene 11559
mm39_v1_chr14_-_57049173_57049173	0.07726598387830688	Gli3_Zic1	ENSMUST00000039812.16|Zmym5|ENSMUSG00000040123.18|zinc finger, MYM-type 5	ENSMUST00000111285.9|Zmym5|ENSMUSG00000040123.18|zinc finger, MYM-type 5
mm39_v1_chr5_-_148865429_148865480	0.07612601132337686	Gli3_Zic1	ENSMUST00000149169.3|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1	ENSMUST00000047257.15|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1
mm39_v1_chr6_-_35516700_35516823	0.07562333208531952	Gli3_Zic1	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr11_+_115353290_115353332	0.07200800002696976	Gli3_Zic1	ENSMUST00000106532.4|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5	ENSMUST00000092445.12|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5	ENSMUST00000153466.2|Slc16a5|ENSMUSG00000045775.16|solute carrier family 16 (monocarboxylic acid transporters), member 5
mm39_v1_chr6_-_142647985_142648016	0.07193476598927714	Gli3_Zic1	ENSMUST00000205202.3|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	ENSMUST00000073173.12|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9	ENSMUST00000111771.8|Abcc9|ENSMUSG00000030249.16|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm39_v1_chr11_-_116249883_116249930	0.07161164367098796	Gli3_Zic1	ENSMUST00000149147.8|Rnf157|ENSMUSG00000052949.15|ring finger protein 157
mm39_v1_chr4_+_131649001_131649082	0.07147314262037732	Gli3_Zic1	ENSMUST00000094666.4|Tmem200b|ENSMUSG00000070720.5|transmembrane protein 200B
mm39_v1_chr4_+_154954042_154954093	0.07056280499848992	Gli3_Zic1	ENSMUST00000079269.14|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000163732.8|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000080559.13|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1
mm39_v1_chr9_+_40180726_40180737	0.0697397600851577	Gli3_Zic1	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
mm39_v1_chr7_+_99184645_99184709	0.06931896570617925	Gli3_Zic1	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr8_+_11778039_11778105	0.06873870770825886	Gli3_Zic1	ENSMUST00000110909.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr7_-_142211203_142211233	0.06873552829942962	Gli3_Zic1	ENSMUST00000097936.9|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2	ENSMUST00000000033.12|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2
mm39_v1_chr6_+_127538268_127538306	0.06719670606557103	Gli3_Zic1	ENSMUST00000212051.2|Cracr2a|ENSMUSG00000061414.9|calcium release activated channel regulator 2A
mm39_v1_chr5_-_24935633_24935725	0.0666134176012083	Gli3_Zic1	ENSMUST00000068693.12|Wdr86|ENSMUSG00000055235.12|WD repeat domain 86
mm39_v1_chr4_+_144619647_144619673	0.0654596363526016	Gli3_Zic1	ENSMUST00000154208.8|Dhrs3|ENSMUSG00000066026.15|dehydrogenase/reductase (SDR family) member 3
mm39_v1_chrX_+_93278203_93278210	0.0646658528717514	Gli3_Zic1	ENSMUST00000153900.8|Klhl15|ENSMUSG00000043929.17|kelch-like 15
mm39_v1_chr10_+_128542120_128542133	0.06440790699438974	Gli3_Zic1	ENSMUST00000054125.9|Pmel|ENSMUSG00000025359.11|premelanosome protein
mm39_v1_chr5_-_108280350_108280404	0.06418040571996173	Gli3_Zic1	ENSMUST00000119784.2|Tmed5|ENSMUSG00000063406.12|transmembrane p24 trafficking protein 5	ENSMUST00000117759.2|Tmed5|ENSMUSG00000063406.12|transmembrane p24 trafficking protein 5
mm39_v1_chr6_-_101354858_101354977	0.0639113313648043	Gli3_Zic1	ENSMUST00000075994.11|Pdzrn3|ENSMUSG00000035357.18|PDZ domain containing RING finger 3
mm39_v1_chr2_+_70392351_70392386	0.06319154066825021	Gli3_Zic1	ENSMUST00000094934.11|Gad1|ENSMUSG00000070880.11|glutamate decarboxylase 1
mm39_v1_chr6_+_17463748_17463808	0.062131771551052206	Gli3_Zic1	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr13_-_95170755_95170796	0.061471238617798706	Gli3_Zic1	ENSMUST00000162670.8|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B
mm39_v1_chr7_-_19398930_19398958	0.061196622733392374	Gli3_Zic1	ENSMUST00000055242.11|Clptm1|ENSMUSG00000002981.11|cleft lip and palate associated transmembrane protein 1
mm39_v1_chr15_-_97742045_97742130	0.06097584053038137	Gli3_Zic1	ENSMUST00000120683.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr4_+_132738787_132738817	0.06096853575061686	Gli3_Zic1	ENSMUST00000105915.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1	ENSMUST00000105916.8|Ahdc1|ENSMUSG00000037692.15|AT hook, DNA binding motif, containing 1
mm39_v1_chr2_+_170573727_170573838	0.06053749802497042	Gli3_Zic1	ENSMUST00000029075.5|Dok5|ENSMUSG00000027560.5|docking protein 5
mm39_v1_chr5_-_137784912_137784930	0.057891749297845956	Gli3_Zic1	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr13_+_109822527_109822690	0.05788403599334933	Gli3_Zic1	ENSMUST00000074103.12|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr4_-_126096376_126096510	0.05761471357441111	Gli3_Zic1	ENSMUST00000106142.8|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3	ENSMUST00000169403.8|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3	ENSMUST00000130334.2|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
mm39_v1_chr18_+_65022035_65022105	0.05725972707599298	Gli3_Zic1	ENSMUST00000224385.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000163516.9|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr19_-_38113249_38113276	0.05661392773281412	Gli3_Zic1	ENSMUST00000112335.4|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma
mm39_v1_chr13_-_14787602_14787750	0.056421065665359864	Gli3_Zic1	ENSMUST00000220621.2|Mrpl32|ENSMUSG00000015672.5|mitochondrial ribosomal protein L32
mm39_v1_chr16_+_18595589_18595606	0.0560761213819331	Gli3_Zic1	ENSMUST00000043577.3|Cldn5|ENSMUSG00000041378.3|claudin 5
mm39_v1_chr12_-_70274433_70274457	0.05556286322022631	Gli3_Zic1	ENSMUST00000071250.13|Pygl|ENSMUSG00000021069.18|liver glycogen phosphorylase
mm39_v1_chr16_-_20060053_20060113	0.05478271053394518	Gli3_Zic1	ENSMUST00000040880.9|Map6d1|ENSMUSG00000041205.9|MAP6 domain containing 1
mm39_v1_chr3_-_95264467_95264522	0.05464596526390779	Gli3_Zic1	ENSMUST00000107171.10|Setdb1|ENSMUSG00000015697.15|SET domain, bifurcated 1	ENSMUST00000015841.12|Setdb1|ENSMUSG00000015697.15|SET domain, bifurcated 1	ENSMUST00000107170.3|Setdb1|ENSMUSG00000015697.15|SET domain, bifurcated 1
mm39_v1_chr8_+_127790772_127791097	0.05397805850915197	Gli3_Zic1	ENSMUST00000079777.12|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160272.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162907.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162536.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000026921.13|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162665.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162602.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160581.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000161355.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000162531.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000160766.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator	ENSMUST00000159537.8|Pard3|ENSMUSG00000025812.19|par-3 family cell polarity regulator
mm39_v1_chrX_-_58613428_58613454	0.05333555184782663	Gli3_Zic1	ENSMUST00000119833.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13	ENSMUST00000131319.8|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr11_-_116572116_116572116	0.0515174324399241	Gli3_Zic1	ENSMUST00000144398.2|St6galnac2|ENSMUSG00000110170.2|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
mm39_v1_chr3_-_95811993_95812006	0.0507817397811389	Gli3_Zic1	ENSMUST00000147962.3|Car14|ENSMUSG00000038526.15|carbonic anhydrase 14	ENSMUST00000036181.15|Car14|ENSMUSG00000038526.15|carbonic anhydrase 14
mm39_v1_chr14_-_57048921_57048921	0.0506910725755322	Gli3_Zic1	ENSMUST00000173954.3|Zmym5|ENSMUSG00000040123.18|zinc finger, MYM-type 5
mm39_v1_chr3_+_135144202_135144241	0.0491169045961832	Gli3_Zic1	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr7_-_66339319_66339351	0.04829480951215244	Gli3_Zic1	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr6_-_35285045_35285071	0.04814998179581703	Gli3_Zic1	ENSMUST00000031868.5|Slc13a4|ENSMUSG00000029843.5|solute carrier family 13 (sodium/sulfate symporters), member 4
mm39_v1_chr5_+_118383291_118383362	0.04802675943312459	Gli3_Zic1	ENSMUST00000049138.8|Spring1|ENSMUSG00000032840.8|SREBF pathway regulator in golgi 1
mm39_v1_chr5_+_115644727_115644915	0.04683815833766153	Gli3_Zic1	ENSMUST00000067268.15|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000086523.7|Pxn|ENSMUSG00000029528.20|paxillin	ENSMUST00000212819.3|Pxn|ENSMUSG00000029528.20|paxillin
mm39_v1_chr6_+_48372771_48372807	0.0460264128745031	Gli3_Zic1	ENSMUST00000114572.9|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr17_+_37361523_37361566	0.04586836784238262	Gli3_Zic1	ENSMUST00000172792.8|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1	ENSMUST00000174347.2|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr11_-_69260203_69260242	0.04564675045666653	Gli3_Zic1	ENSMUST00000092971.13|Chd3|ENSMUSG00000018474.19|chromodomain helicase DNA binding protein 3	ENSMUST00000108661.8|Chd3|ENSMUSG00000018474.19|chromodomain helicase DNA binding protein 3
mm39_v1_chr15_-_100976370_100976448	0.04536893743718992	Gli3_Zic1	ENSMUST00000213610.2|Fignl2|ENSMUSG00000095440.3|fidgetin-like 2
mm39_v1_chr16_-_64672011_64672117	0.04486180893814779	Gli3_Zic1	ENSMUST00000207826.2|Zfp654|ENSMUSG00000047141.6|zinc finger protein 654
mm39_v1_chr11_+_72687080_72687093	0.043563495703311195	Gli3_Zic1	ENSMUST00000207107.2|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1
mm39_v1_chr4_+_74170165_74170248	0.04294387468902106	Gli3_Zic1	ENSMUST00000030102.12|Kdm4c|ENSMUSG00000028397.14|lysine (K)-specific demethylase 4C
mm39_v1_chr8_+_23629080_23629121	0.04144911343564212	Gli3_Zic1	ENSMUST00000033947.15|Ank1|ENSMUSG00000031543.19|ankyrin 1, erythroid
mm39_v1_chr15_-_99717956_99718037	0.041039003805350686	Gli3_Zic1	ENSMUST00000109024.9|Lima1|ENSMUSG00000023022.15|LIM domain and actin binding 1
mm39_v1_chr4_-_147932817_147932887	0.040926283903902134	Gli3_Zic1	ENSMUST00000105718.8|Zfp933|ENSMUSG00000059423.14|zinc finger protein 933	ENSMUST00000135798.2|Zfp933|ENSMUSG00000059423.14|zinc finger protein 933
mm39_v1_chr2_+_181162326_181162364	0.04080035529873232	Gli3_Zic1	ENSMUST00000108797.8|Dnajc5|ENSMUSG00000000826.17|DnaJ heat shock protein family (Hsp40) member C5
mm39_v1_chr7_+_79896121_79896177	0.04075532434789425	Gli3_Zic1	ENSMUST00000058266.9|Ttll13|ENSMUSG00000045467.14|tubulin tyrosine ligase-like family, member 13
mm39_v1_chr4_-_126096551_126096554	0.040695553092659896	Gli3_Zic1	ENSMUST00000080919.12|Thrap3|ENSMUSG00000043962.17|thyroid hormone receptor associated protein 3
mm39_v1_chr11_+_95734028_95734144	0.04027887319390788	Gli3_Zic1	ENSMUST00000107709.8|Gngt2|ENSMUSG00000038811.14|guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2
mm39_v1_chr5_-_113957362_113957385	0.04019543195923527	Gli3_Zic1	ENSMUST00000202555.2|Selplg|ENSMUSG00000048163.14|selectin, platelet (p-selectin) ligand
mm39_v1_chr3_+_94386385_94386456	0.039301637159123805	Gli3_Zic1	ENSMUST00000199775.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr14_+_34395845_34395890	0.038409009566446314	Gli3_Zic1	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr6_-_28830344_28830344	0.037944281295621045	Gli3_Zic1	ENSMUST00000171353.2|Lrrc4|ENSMUSG00000049939.7|leucine rich repeat containing 4
mm39_v1_chr2_+_164721277_164721318	0.03765776699368885	Gli3_Zic1	ENSMUST00000041643.5|Pcif1|ENSMUSG00000039849.7|phosphorylated CTD interacting factor 1
mm39_v1_chr5_-_32903687_32903755	0.037078545420744874	Gli3_Zic1	ENSMUST00000135248.2|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chr4_+_123127349_123127349	0.034632587188289085	Gli3_Zic1	ENSMUST00000040821.5|Heyl|ENSMUSG00000032744.5|hairy/enhancer-of-split related with YRPW motif-like
mm39_v1_chr17_-_68311073_68311135	0.03447099302804564	Gli3_Zic1	ENSMUST00000024840.12|Arhgap28|ENSMUSG00000024043.14|Rho GTPase activating protein 28
mm39_v1_chr18_-_34139972_34140042	0.03348123346564972	Gli3_Zic1	ENSMUST00000025234.7|Epb41l4a|ENSMUSG00000024376.8|erythrocyte membrane protein band 4.1 like 4a
mm39_v1_chr2_+_29780532_29780557	0.03345628841212033	Gli3_Zic1	ENSMUST00000113764.4|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr19_+_4281953_4281982	0.03247257960402431	Gli3_Zic1	ENSMUST00000025773.5|Pold4|ENSMUSG00000024854.5|polymerase (DNA-directed), delta 4
mm39_v1_chr3_+_135144287_135144301	0.03225860402180259	Gli3_Zic1	ENSMUST00000196591.5|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr4_-_119272667_119272685	0.03171206160459691	Gli3_Zic1	ENSMUST00000238609.2|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr15_-_56557920_56557950	0.031193953710263355	Gli3_Zic1	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr6_+_48372520_48372580	0.031135100064794835	Gli3_Zic1	ENSMUST00000114571.8|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1	ENSMUST00000031815.12|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1	ENSMUST00000203371.3|Krba1|ENSMUSG00000042810.15|KRAB-A domain containing 1
mm39_v1_chr1_+_167425953_167425978	0.02983288163940659	Gli3_Zic1	ENSMUST00000015987.10|Rxrg|ENSMUSG00000015843.11|retinoid X receptor gamma
mm39_v1_chr10_-_52258170_52258237	0.029364872266580466	Gli3_Zic1	ENSMUST00000020008.10|Gopc|ENSMUSG00000019861.16|golgi associated PDZ and coiled-coil motif containing	ENSMUST00000105475.9|Gopc|ENSMUSG00000019861.16|golgi associated PDZ and coiled-coil motif containing
mm39_v1_chr11_-_118139418_118139433	0.028643611141300603	Gli3_Zic1	ENSMUST00000106305.9|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr11_-_100830366_100830388	0.027557194165046508	Gli3_Zic1	ENSMUST00000127638.8|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3
mm39_v1_chr7_-_126483851_126483901	0.027113016105384424	Gli3_Zic1	ENSMUST00000071268.11|Taok2|ENSMUSG00000059981.13|TAO kinase 2	ENSMUST00000117394.2|Taok2|ENSMUSG00000059981.13|TAO kinase 2
mm39_v1_chr8_+_27937691_27937709	0.02566391931768207	Gli3_Zic1	ENSMUST00000081321.5|Poteg|ENSMUSG00000063932.6|POTE ankyrin domain family, member G
mm39_v1_chr8_-_33374282_33374329	0.025461898864663535	Gli3_Zic1	ENSMUST00000209107.4|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000209022.3|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr5_+_143355815_143355847	0.024628594901271447	Gli3_Zic1	ENSMUST00000120825.2|Grid2ip|ENSMUSG00000010825.18|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
mm39_v1_chr19_+_6434416_6434453	0.02440025090685846	Gli3_Zic1	ENSMUST00000035269.15|Pygm|ENSMUSG00000032648.15|muscle glycogen phosphorylase	ENSMUST00000113483.2|Pygm|ENSMUSG00000032648.15|muscle glycogen phosphorylase
mm39_v1_chr5_-_118382926_118383181	0.02418014954824635	Gli3_Zic1	ENSMUST00000117177.8|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2	ENSMUST00000133372.2|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2	ENSMUST00000154786.8|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2	ENSMUST00000121369.8|Rnft2|ENSMUSG00000032850.17|ring finger protein, transmembrane 2
mm39_v1_chr1_+_153776323_153776352	0.02397615777908241	Gli3_Zic1	ENSMUST00000140685.4|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)	ENSMUST00000139476.8|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)
mm39_v1_chr2_-_160714749_160714863	0.023314172364719544	Gli3_Zic1	ENSMUST00000176141.8|Zhx3|ENSMUSG00000035877.18|zinc fingers and homeoboxes 3
mm39_v1_chr12_+_9079966_9080013	0.022645310692650095	Gli3_Zic1	ENSMUST00000085741.2|Ttc32|ENSMUSG00000066637.3|tetratricopeptide repeat domain 32
mm39_v1_chr2_-_30691709_30691755	0.022173932725038894	Gli3_Zic1	ENSMUST00000050003.9|1700001O22Rik|ENSMUSG00000044320.15|RIKEN cDNA 1700001O22 gene
mm39_v1_chr4_+_42950367_42950476	0.02157635002591734	Gli3_Zic1	ENSMUST00000084662.12|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr2_-_125565307_125565457	0.02147009475999879	Gli3_Zic1	ENSMUST00000042246.14|Shc4|ENSMUSG00000035109.15|SHC (Src homology 2 domain containing) family, member 4
mm39_v1_chr8_-_33374825_33374944	0.02121766635593086	Gli3_Zic1	ENSMUST00000238791.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr11_-_100830288_100830311	0.02100919340089093	Gli3_Zic1	ENSMUST00000138438.2|Stat3|ENSMUSG00000004040.17|signal transducer and activator of transcription 3
mm39_v1_chr5_+_71857261_71857292	0.020471718724298083	Gli3_Zic1	ENSMUST00000031122.9|Gabrb1|ENSMUSG00000029212.12|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm39_v1_chr1_+_72863641_72863662	0.020244336568899613	Gli3_Zic1	ENSMUST00000047328.11|Igfbp2|ENSMUSG00000039323.19|insulin-like growth factor binding protein 2
mm39_v1_chr12_-_98225676_98225718	0.02016706232521896	Gli3_Zic1	ENSMUST00000021390.9|Galc|ENSMUSG00000021003.11|galactosylceramidase
mm39_v1_chr17_+_37356854_37356869	0.020165587087827015	Gli3_Zic1	ENSMUST00000025338.16|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr9_-_114393406_114393437	0.019209991180603233	Gli3_Zic1	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr11_-_113600838_113600849	0.019200208968577687	Gli3_Zic1	ENSMUST00000018871.8|Cpsf4l|ENSMUSG00000018727.20|cleavage and polyadenylation specific factor 4-like
mm39_v1_chr2_+_150628655_150628714	0.01915434443782635	Gli3_Zic1	ENSMUST00000045441.8|Pygb|ENSMUSG00000033059.8|brain glycogen phosphorylase
mm39_v1_chr12_+_76451177_76451201	0.018606829629848484	Gli3_Zic1	ENSMUST00000219555.2|Hspa2|ENSMUSG00000059970.8|heat shock protein 2
mm39_v1_chr16_-_85599994_85600009	0.018434567479305882	Gli3_Zic1	ENSMUST00000023610.15|Adamts1|ENSMUSG00000022893.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm39_v1_chr19_+_8641369_8641484	0.018420455345053915	Gli3_Zic1	ENSMUST00000035444.10|Chrm1|ENSMUSG00000032773.10|cholinergic receptor, muscarinic 1, CNS	ENSMUST00000163785.2|Chrm1|ENSMUSG00000032773.10|cholinergic receptor, muscarinic 1, CNS
mm39_v1_chr9_-_58065800_58065844	0.0182179937859464	Gli3_Zic1	ENSMUST00000168864.4|Islr|ENSMUSG00000037206.16|immunoglobulin superfamily containing leucine-rich repeat
mm39_v1_chr11_-_121279062_121279093	0.017901397128693132	Gli3_Zic1	ENSMUST00000106107.3|Rab40b|ENSMUSG00000025170.14|Rab40B, member RAS oncogene family
mm39_v1_chr7_+_57240894_57240956	0.017878019809720917	Gli3_Zic1	ENSMUST00000039697.14|Gabrb3|ENSMUSG00000033676.14|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm39_v1_chr11_+_49792627_49792723	0.016655003942334337	Gli3_Zic1	ENSMUST00000093141.12|Rasgef1c|ENSMUSG00000020374.17|RasGEF domain family, member 1C	ENSMUST00000093142.12|Rasgef1c|ENSMUSG00000020374.17|RasGEF domain family, member 1C
mm39_v1_chr11_+_67586140_67586152	0.016249441346879775	Gli3_Zic1	ENSMUST00000021290.2|Rcvrn|ENSMUSG00000020907.2|recoverin
mm39_v1_chr19_-_5610628_5610674	0.01621651446673539	Gli3_Zic1	ENSMUST00000025861.3|Ovol1|ENSMUSG00000024922.3|ovo like zinc finger 1
mm39_v1_chr7_+_46401214_46401265	0.01612247073867566	Gli3_Zic1	ENSMUST00000210769.2|Saa2|ENSMUSG00000057465.6|serum amyloid A 2	ENSMUST00000210272.2|Saa2|ENSMUSG00000057465.6|serum amyloid A 2	ENSMUST00000075982.4|Saa2|ENSMUSG00000057465.6|serum amyloid A 2
mm39_v1_chr16_+_17379749_17379906	0.015819677727236303	Gli3_Zic1	ENSMUST00000171002.10|P2rx6|ENSMUSG00000022758.15|purinergic receptor P2X, ligand-gated ion channel, 6	ENSMUST00000023441.11|P2rx6|ENSMUSG00000022758.15|purinergic receptor P2X, ligand-gated ion channel, 6
mm39_v1_chr7_-_24459736_24459753	0.01536183846046539	Gli3_Zic1	ENSMUST00000063956.7|Cd177|ENSMUSG00000052212.7|CD177 antigen
mm39_v1_chr15_+_99290832_99290903	0.01527572257582977	Gli3_Zic1	ENSMUST00000160635.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161250.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000229392.2|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161778.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr1_+_75336965_75336997	0.015275515013886354	Gli3_Zic1	ENSMUST00000027409.10|Des|ENSMUSG00000026208.10|desmin
mm39_v1_chr13_-_63721412_63721412	0.014810374777159518	Gli3_Zic1	ENSMUST00000195106.2|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr9_+_113570506_113570551	0.0145629831981613	Gli3_Zic1	ENSMUST00000213663.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr9_-_69668204_69668222	0.014519544186980822	Gli3_Zic1	ENSMUST00000071281.5|Foxb1|ENSMUSG00000059246.5|forkhead box B1
mm39_v1_chr8_+_123844090_123844120	0.01418536444403829	Gli3_Zic1	ENSMUST00000037900.9|Cpne7|ENSMUSG00000034796.15|copine VII
mm39_v1_chr8_+_123148759_123148759	0.013719384440689132	Gli3_Zic1	ENSMUST00000050963.4|Il17c|ENSMUSG00000046108.4|interleukin 17C
mm39_v1_chr15_+_103411461_103411473	0.013713676501222568	Gli3_Zic1	ENSMUST00000023132.5|Pde1b|ENSMUSG00000022489.7|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm39_v1_chr1_-_75482975_75483046	0.0130901453863481	Gli3_Zic1	ENSMUST00000113567.10|Obsl1|ENSMUSG00000026211.19|obscurin-like 1	ENSMUST00000113565.3|Obsl1|ENSMUSG00000026211.19|obscurin-like 1
mm39_v1_chr11_+_51180747_51180838	0.012317847503217664	Gli3_Zic1	ENSMUST00000102765.9|Col23a1|ENSMUSG00000063564.14|collagen, type XXIII, alpha 1
mm39_v1_chr11_+_60370741_60370741	0.010592797896608868	Gli3_Zic1	ENSMUST00000126522.4|Myo15|ENSMUSG00000042678.18|myosin XV
mm39_v1_chr2_-_181234526_181234596	0.010537300597040326	Gli3_Zic1	ENSMUST00000108789.9|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B	ENSMUST00000153998.2|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B
mm39_v1_chr17_+_33651864_33651885	0.010531658897804634	Gli3_Zic1	ENSMUST00000174088.3|Actl9|ENSMUSG00000092519.3|actin-like 9
mm39_v1_chrX_+_143471903_143471903	0.009992017902079018	Gli3_Zic1	ENSMUST00000112843.2|Rtl4|ENSMUSG00000071679.5|retrotransposon Gag like 4
mm39_v1_chr11_-_69712970_69713006	0.00891038835143872	Gli3_Zic1	ENSMUST00000045771.7|Spem1|ENSMUSG00000041165.7|sperm maturation 1
mm39_v1_chr18_+_34973605_34973646	0.008809836072239159	Gli3_Zic1	ENSMUST00000043484.8|Reep2|ENSMUSG00000038555.8|receptor accessory protein 2
mm39_v1_chr14_+_54704942_54705010	0.008723829510970975	Gli3_Zic1	ENSMUST00000228407.2|Lrp10|ENSMUSG00000022175.10|low-density lipoprotein receptor-related protein 10
mm39_v1_chr7_+_127865472_127865506	0.008583901627582982	Gli3_Zic1	ENSMUST00000033045.11|Slc5a2|ENSMUSG00000030781.14|solute carrier family 5 (sodium/glucose cotransporter), member 2
mm39_v1_chr12_+_76450941_76451038	0.008527515456183748	Gli3_Zic1	ENSMUST00000080449.7|Hspa2|ENSMUSG00000059970.8|heat shock protein 2
mm39_v1_chr11_+_103540391_103540400	0.0078515490058964	Gli3_Zic1	ENSMUST00000057870.4|Rprml|ENSMUSG00000046215.4|reprimo-like
mm39_v1_chr13_+_74269554_74269634	0.007813102482070842	Gli3_Zic1	ENSMUST00000036208.7|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3	ENSMUST00000225423.2|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3	ENSMUST00000221703.2|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3
mm39_v1_chr2_-_113678616_113678719	0.007685104306332568	Gli3_Zic1	ENSMUST00000110947.2|Arhgap11a|ENSMUSG00000041219.15|Rho GTPase activating protein 11A
mm39_v1_chr7_-_78780743_78780766	0.00721754090714622	Gli3_Zic1	ENSMUST00000205782.2|Hapln3|ENSMUSG00000030606.9|hyaluronan and proteoglycan link protein 3	ENSMUST00000206092.2|Hapln3|ENSMUSG00000030606.9|hyaluronan and proteoglycan link protein 3
mm39_v1_chr18_+_65021974_65022000	0.007077591955567887	Gli3_Zic1	ENSMUST00000225261.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr1_+_65350416_65350416	0.006733516258479176	Gli3_Zic1	ENSMUST00000027083.7|Pth2r|ENSMUSG00000025946.14|parathyroid hormone 2 receptor
mm39_v1_chr18_-_39062514_39062532	0.005676998196635401	Gli3_Zic1	ENSMUST00000235922.2|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr3_-_30563919_30563971	0.0055828165470730535	Gli3_Zic1	ENSMUST00000172697.8|Mecom|ENSMUSG00000027684.17|MDS1 and EVI1 complex locus
mm39_v1_chr8_+_23629173_23629293	0.005548680865387318	Gli3_Zic1	ENSMUST00000174435.2|Ank1|ENSMUSG00000031543.19|ankyrin 1, erythroid
mm39_v1_chr9_-_110572721_110572754	0.005021622774468056	Gli3_Zic1	ENSMUST00000166716.8|Pth1r|ENSMUSG00000032492.15|parathyroid hormone 1 receptor
mm39_v1_chr9_+_110134241_110134299	0.0047592452110433925	Gli3_Zic1	ENSMUST00000199592.5|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6	ENSMUST00000068071.12|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6
mm39_v1_chr17_-_13070780_13070804	0.004506831928109855	Gli3_Zic1	ENSMUST00000162389.2|Mas1|ENSMUSG00000068037.12|MAS1 oncogene	ENSMUST00000162119.8|Mas1|ENSMUSG00000068037.12|MAS1 oncogene	ENSMUST00000159223.8|Mas1|ENSMUSG00000068037.12|MAS1 oncogene
mm39_v1_chr5_-_108922819_108922898	0.004490138147830949	Gli3_Zic1	ENSMUST00000200159.2|Rnf212|ENSMUSG00000055385.13|ring finger protein 212	ENSMUST00000212212.2|Rnf212|ENSMUSG00000055385.13|ring finger protein 212
mm39_v1_chr5_+_64387742_64387792	0.003911078941067963	Gli3_Zic1	ENSMUST00000119756.6|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr16_+_20514925_20514963	0.00333528616806703	Gli3_Zic1	ENSMUST00000128273.2|Fam131a|ENSMUSG00000050821.15|family with sequence similarity 131, member A
mm39_v1_chr5_+_91222470_91222487	0.0032530012537599195	Gli3_Zic1	ENSMUST00000031324.6|Ereg|ENSMUSG00000029377.6|epiregulin
mm39_v1_chr5_-_123185073_123185084	0.003187522431142204	Gli3_Zic1	ENSMUST00000031437.14|Morn3|ENSMUSG00000029477.15|MORN repeat containing 3
mm39_v1_chrX_+_160500051_160500068	0.0029624186446345993	Gli3_Zic1	ENSMUST00000112338.2|Rai2|ENSMUSG00000043518.8|retinoic acid induced 2
mm39_v1_chr15_-_89263448_89263462	0.0028315124849758095	Gli3_Zic1	ENSMUST00000049968.9|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr11_+_101137231_101137393	0.0027795647686873976	Gli3_Zic1	ENSMUST00000122006.8|Ramp2|ENSMUSG00000001240.14|receptor (calcitonin) activity modifying protein 2	ENSMUST00000151830.2|Ramp2|ENSMUSG00000001240.14|receptor (calcitonin) activity modifying protein 2
mm39_v1_chr1_+_131755715_131755757	0.002753075467389058	Gli3_Zic1	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr6_+_86172196_86172224	0.00260539980653197	Gli3_Zic1	ENSMUST00000032066.13|Tgfa|ENSMUSG00000029999.15|transforming growth factor alpha
mm39_v1_chr6_+_113508636_113508682	0.002095578361114813	Gli3_Zic1	ENSMUST00000036340.12|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2	ENSMUST00000204827.3|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2
mm39_v1_chr1_+_133278248_133278248	0.0018345875286320753	Gli3_Zic1	ENSMUST00000094556.3|Ren1|ENSMUSG00000070645.6|renin 1 structural
mm39_v1_chr4_+_148070245_148070363	0.0017089809478521634	Gli3_Zic1	ENSMUST00000103231.5|Nppb|ENSMUSG00000029019.9|natriuretic peptide type B
mm39_v1_chr5_-_37981919_37981933	0.001510044582979618	Gli3_Zic1	ENSMUST00000063116.10|Msx1|ENSMUSG00000048450.11|msh homeobox 1
mm39_v1_chr3_+_31204069_31204106	0.001477354970133853	Gli3_Zic1	ENSMUST00000046174.8|Cldn11|ENSMUSG00000037625.8|claudin 11
mm39_v1_chrX_+_160500623_160500653	0.0012147594629010748	Gli3_Zic1	ENSMUST00000061514.8|Rai2|ENSMUSG00000043518.8|retinoic acid induced 2
mm39_v1_chr4_+_127881786_127881848	0.0011372965990346553	Gli3_Zic1	ENSMUST00000184063.3|Csmd2|ENSMUSG00000028804.21|CUB and Sushi multiple domains 2
mm39_v1_chr18_-_82710859_82711058	0.001010841966911075	Gli3_Zic1	ENSMUST00000182122.8|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236	ENSMUST00000171071.9|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236
mm39_v1_chr6_+_124986627_124986768	0.0010093741392434563	Gli3_Zic1	ENSMUST00000046064.17|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384	ENSMUST00000152752.8|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384	ENSMUST00000088308.10|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384	ENSMUST00000112425.8|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384	ENSMUST00000084275.12|Zfp384|ENSMUSG00000038346.19|zinc finger protein 384
mm39_v1_chr1_+_162466717_162466727	0.0008447701043824725	Gli3_Zic1	ENSMUST00000028020.11|Myoc|ENSMUSG00000026697.11|myocilin
mm39_v1_chrX_+_85235370_85235388	0.000839090076385117	Gli3_Zic1	ENSMUST00000026036.5|Nr0b1|ENSMUSG00000025056.5|nuclear receptor subfamily 0, group B, member 1
mm39_v1_chr14_+_36776775_36776811	0.0008163503096251475	Gli3_Zic1	ENSMUST00000120052.2|Lrit1|ENSMUSG00000041044.10|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1
mm39_v1_chr14_-_8457069_8457272	0.0007999951561043842	Gli3_Zic1	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr11_-_58692770_58692793	0.0007907850091557853	Gli3_Zic1	ENSMUST00000094156.12|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000239007.2|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000238886.2|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B	ENSMUST00000060581.5|Fam183b|ENSMUSG00000049154.13|family with sequence similarity 183, member B
mm39_v1_chr11_-_99684173_99684293	0.00032421940537894785	Gli3_Zic1	ENSMUST00000105058.2|Gm11596|ENSMUSG00000078261.2|predicted gene 11596
mm39_v1_chr18_-_39062201_39062222	0.0002744999548563913	Gli3_Zic1	ENSMUST00000134864.2|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr1_-_33946802_33946897	0.00020978758630028958	Gli3_Zic1	ENSMUST00000115161.8|Bend6|ENSMUSG00000042182.17|BEN domain containing 6	ENSMUST00000129464.8|Bend6|ENSMUSG00000042182.17|BEN domain containing 6	ENSMUST00000062289.11|Bend6|ENSMUSG00000042182.17|BEN domain containing 6
mm39_v1_chr3_+_92195873_92195873	0.00011992623390225705	Gli3_Zic1	ENSMUST00000090872.7|Sprr2a3|ENSMUSG00000074445.5|small proline-rich protein 2A3
