mm39_v1_chr6_-_52181393_52181567	0.47517096807525455	Hoxa11_Hoxc12	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr2_-_165996716_165996779	0.2889503717241665	Hoxa11_Hoxc12	ENSMUST00000139266.2|Sulf2|ENSMUSG00000006800.15|sulfatase 2
mm39_v1_chr19_+_4147391_4147417	0.2598183519146101	Hoxa11_Hoxc12	ENSMUST00000174514.2|Cdk2ap2|ENSMUSG00000024856.11|CDK2-associated protein 2	ENSMUST00000174149.8|Cdk2ap2|ENSMUSG00000024856.11|CDK2-associated protein 2
mm39_v1_chr6_-_52217821_52217834	0.22766937811958254	Hoxa11_Hoxc12	ENSMUST00000121043.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr14_+_80237691_80237749	0.20006209432246103	Hoxa11_Hoxc12	ENSMUST00000228749.2|Olfm4|ENSMUSG00000022026.8|olfactomedin 4	ENSMUST00000088735.4|Olfm4|ENSMUSG00000022026.8|olfactomedin 4
mm39_v1_chr11_-_43317017_43317086	0.18053512657507842	Hoxa11_Hoxc12	ENSMUST00000101340.11|Pttg1|ENSMUSG00000020415.17|pituitary tumor-transforming gene 1	ENSMUST00000118368.8|Pttg1|ENSMUSG00000020415.17|pituitary tumor-transforming gene 1	ENSMUST00000020685.10|Pttg1|ENSMUSG00000020415.17|pituitary tumor-transforming gene 1	ENSMUST00000020687.15|Pttg1|ENSMUSG00000020415.17|pituitary tumor-transforming gene 1
mm39_v1_chr16_+_13572409_13572500	0.14669614047876953	Hoxa11_Hoxc12	ENSMUST00000239037.2|A930007A09Rik|ENSMUSG00000118559.3|RIKEN cDNA A930007A09 gene
mm39_v1_chr1_+_178356678_178356699	0.1389883047023677	Hoxa11_Hoxc12	ENSMUST00000161017.8|Kif26b|ENSMUSG00000026494.13|kinesin family member 26B
mm39_v1_chr15_+_82183143_82183165	0.12957417054153725	Hoxa11_Hoxc12	ENSMUST00000023089.5|Wbp2nl|ENSMUSG00000022455.5|WBP2 N-terminal like
mm39_v1_chr17_+_8502682_8502693	0.12844965872866296	Hoxa11_Hoxc12	ENSMUST00000124023.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr12_-_101942463_101942513	0.12174679965423915	Hoxa11_Hoxc12	ENSMUST00000221422.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr17_+_8502594_8502661	0.11884082030435358	Hoxa11_Hoxc12	ENSMUST00000155364.8|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1	ENSMUST00000046754.15|Mpc1|ENSMUSG00000023861.18|mitochondrial pyruvate carrier 1
mm39_v1_chr2_+_28095660_28095684	0.1071912359732155	Hoxa11_Hoxc12	ENSMUST00000102879.4|Olfm1|ENSMUSG00000026833.19|olfactomedin 1	ENSMUST00000028177.11|Olfm1|ENSMUSG00000026833.19|olfactomedin 1
mm39_v1_chr8_+_34143266_34143266	0.10572590167446562	Hoxa11_Hoxc12	ENSMUST00000033992.9|Gsr|ENSMUSG00000031584.17|glutathione reductase
mm39_v1_chr9_+_44318380_44318459	0.0982271404251424	Hoxa11_Hoxc12	ENSMUST00000080300.9|Rps25|ENSMUSG00000009927.10|ribosomal protein S25
mm39_v1_chr9_+_44318926_44318994	0.0957082597057869	Hoxa11_Hoxc12	ENSMUST00000216076.2|Rps25|ENSMUSG00000009927.10|ribosomal protein S25	ENSMUST00000216867.2|Rps25|ENSMUSG00000009927.10|ribosomal protein S25
mm39_v1_chr11_-_62680273_62680303	0.09432776734438063	Hoxa11_Hoxc12	ENSMUST00000054654.13|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286
mm39_v1_chr6_-_52195663_52195696	0.09240576228004622	Hoxa11_Hoxc12	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr9_-_50571080_50571107	0.09185376313433556	Hoxa11_Hoxc12	ENSMUST00000034567.4|Dlat|ENSMUSG00000000168.11|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm39_v1_chr9_-_106125055_106125073	0.07292484888339097	Hoxa11_Hoxc12	ENSMUST00000074082.13|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr19_+_10160884_10160918	0.07096381786787719	Hoxa11_Hoxc12	ENSMUST00000236594.2|Fads1|ENSMUSG00000010663.6|fatty acid desaturase 1
mm39_v1_chr16_-_57051829_57051872	0.06886492570781898	Hoxa11_Hoxc12	ENSMUST00000023431.8|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr4_+_132262853_132262970	0.06651676448610759	Hoxa11_Hoxc12	ENSMUST00000094657.10|Dnajc8|ENSMUSG00000054405.15|DnaJ heat shock protein family (Hsp40) member C8	ENSMUST00000105940.10|Dnajc8|ENSMUSG00000054405.15|DnaJ heat shock protein family (Hsp40) member C8	ENSMUST00000105939.10|Dnajc8|ENSMUSG00000054405.15|DnaJ heat shock protein family (Hsp40) member C8	ENSMUST00000150207.8|Dnajc8|ENSMUSG00000054405.15|DnaJ heat shock protein family (Hsp40) member C8
mm39_v1_chr1_+_87998487_87998522	0.06378370329272112	Hoxa11_Hoxc12	ENSMUST00000073772.5|Ugt1a9|ENSMUSG00000090175.2|UDP glucuronosyltransferase 1 family, polypeptide A9
mm39_v1_chr13_+_98399750_98399812	0.06290471406230548	Hoxa11_Hoxc12	ENSMUST00000022164.16|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr13_-_35211060_35211082	0.06101126745369058	Hoxa11_Hoxc12	ENSMUST00000170538.8|Eci2|ENSMUSG00000021417.16|enoyl-Coenzyme A delta isomerase 2	ENSMUST00000163280.8|Eci2|ENSMUSG00000021417.16|enoyl-Coenzyme A delta isomerase 2
mm39_v1_chr9_-_106124917_106124968	0.05726693817936769	Hoxa11_Hoxc12	ENSMUST00000112524.9|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1	ENSMUST00000219129.2|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr7_+_126248471_126248517	0.05603968953765278	Hoxa11_Hoxc12	ENSMUST00000032956.10|Sgf29|ENSMUSG00000030714.15|SAGA complex associated factor 29	ENSMUST00000126570.8|Sgf29|ENSMUSG00000030714.15|SAGA complex associated factor 29
mm39_v1_chr6_+_40448334_40448398	0.05565777137330345	Hoxa11_Hoxc12	ENSMUST00000031971.13|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr12_-_101943134_101943323	0.05462561412773104	Hoxa11_Hoxc12	ENSMUST00000221227.2|Ndufb1|ENSMUSG00000113902.2|NADH:ubiquinone oxidoreductase subunit B1
mm39_v1_chr11_-_62680228_62680269	0.054337347595952774	Hoxa11_Hoxc12	ENSMUST00000207597.2|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286	ENSMUST00000108705.8|Zfp286|ENSMUSG00000047342.18|zinc finger protein 286
mm39_v1_chr7_+_67297152_67297204	0.05107447717898223	Hoxa11_Hoxc12	ENSMUST00000032774.16|Ttc23|ENSMUSG00000030555.17|tetratricopeptide repeat domain 23	ENSMUST00000107471.8|Ttc23|ENSMUSG00000030555.17|tetratricopeptide repeat domain 23
mm39_v1_chr6_+_40448400_40448460	0.05062831960507131	Hoxa11_Hoxc12	ENSMUST00000121360.8|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1	ENSMUST00000117411.8|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1	ENSMUST00000117830.2|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr9_-_71075939_71075965	0.050466327804386875	Hoxa11_Hoxc12	ENSMUST00000113570.8|Aqp9|ENSMUSG00000032204.14|aquaporin 9
mm39_v1_chr9_+_108566513_108566552	0.049658478802264816	Hoxa11_Hoxc12	ENSMUST00000192344.2|Prkar2a|ENSMUSG00000032601.14|protein kinase, cAMP dependent regulatory, type II alpha
mm39_v1_chr12_+_75355082_75355096	0.04841127699009394	Hoxa11_Hoxc12	ENSMUST00000118602.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000118966.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000055390.6|Rhoj|ENSMUSG00000046768.14|ras homolog family member J
mm39_v1_chr19_-_46327071_46327141	0.048184875993886676	Hoxa11_Hoxc12	ENSMUST00000235977.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000167861.8|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000051234.9|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000236066.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2
mm39_v1_chr13_+_98399582_98399686	0.04721382482555574	Hoxa11_Hoxc12	ENSMUST00000150352.3|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2	ENSMUST00000226100.2|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2	ENSMUST00000150916.9|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr9_+_75348800_75348857	0.04709011936140668	Hoxa11_Hoxc12	ENSMUST00000048937.6|Leo1|ENSMUSG00000042487.7|Leo1, Paf1/RNA polymerase II complex component
mm39_v1_chr11_-_97590460_97590519	0.046719305824691616	Hoxa11_Hoxc12	ENSMUST00000103148.8|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2	ENSMUST00000169807.8|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr1_+_171330978_171331046	0.04589715206239477	Hoxa11_Hoxc12	ENSMUST00000081527.2|Alyref2|ENSMUSG00000060244.2|Aly/REF export factor 2
mm39_v1_chr19_-_46327024_46327069	0.045353713344520076	Hoxa11_Hoxc12	ENSMUST00000236046.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000236980.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000235485.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000236061.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000236236.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000236768.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2	ENSMUST00000236651.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2
mm39_v1_chr18_-_10706701_10706771	0.044815573766922724	Hoxa11_Hoxc12	ENSMUST00000002549.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117726.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117828.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3
mm39_v1_chr19_-_4062738_4062806	0.044737609525262546	Hoxa11_Hoxc12	ENSMUST00000136921.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000042497.14|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1
mm39_v1_chr6_-_29216299_29216336	0.043845146690974966	Hoxa11_Hoxc12	ENSMUST00000162739.8|Impdh1|ENSMUSG00000003500.14|inosine monophosphate dehydrogenase 1
mm39_v1_chr1_+_43769750_43769798	0.04365359928940093	Hoxa11_Hoxc12	ENSMUST00000027217.9|Ecrg4|ENSMUSG00000026051.9|ECRG4 augurin precursor
mm39_v1_chr6_-_22356098_22356174	0.04352713403078535	Hoxa11_Hoxc12	ENSMUST00000165576.8|Fam3c|ENSMUSG00000029672.17|family with sequence similarity 3, member C
mm39_v1_chr19_-_46338686_46338741	0.042730539242327344	Hoxa11_Hoxc12	ENSMUST00000189008.3|2310034G01Rik|ENSMUSG00000099655.3|RIKEN cDNA 2310034G01 gene
mm39_v1_chr14_-_55909314_55909378	0.04234467881343391	Hoxa11_Hoxc12	ENSMUST00000163750.8|Nedd8|ENSMUSG00000010376.16|neural precursor cell expressed, developmentally down-regulated gene 8
mm39_v1_chr3_-_88366159_88366205	0.04200478215410785	Hoxa11_Hoxc12	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr14_-_55909527_55909581	0.04196460215298799	Hoxa11_Hoxc12	ENSMUST00000010520.10|Nedd8|ENSMUSG00000010376.16|neural precursor cell expressed, developmentally down-regulated gene 8
mm39_v1_chr11_+_115294560_115294603	0.041738875400646594	Hoxa11_Hoxc12	ENSMUST00000153983.8|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000106539.10|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000103036.5|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58
mm39_v1_chr19_-_4062656_4062736	0.0416117410854408	Hoxa11_Hoxc12	ENSMUST00000134479.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000128787.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000237862.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000236203.2|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1	ENSMUST00000133474.8|Ndufv1|ENSMUSG00000037916.15|NADH:ubiquinone oxidoreductase core subunit V1
mm39_v1_chr3_+_89084770_89084850	0.038055093646710135	Hoxa11_Hoxc12	ENSMUST00000029684.15|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000120697.8|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3	ENSMUST00000098941.5|Scamp3|ENSMUSG00000028049.16|secretory carrier membrane protein 3
mm39_v1_chr17_-_22064740_22064753	0.037314573185089496	Hoxa11_Hoxc12	ENSMUST00000084141.6|Zfp820|ENSMUSG00000069743.6|zinc finger protein 820	ENSMUST00000232918.2|Zfp820|ENSMUSG00000069743.6|zinc finger protein 820
mm39_v1_chr2_+_74542255_74542283	0.03519317763655455	Hoxa11_Hoxc12	ENSMUST00000111983.9|Hoxd3|ENSMUSG00000079277.10|homeobox D3
mm39_v1_chr11_-_102588536_102588608	0.033025551196289374	Hoxa11_Hoxc12	ENSMUST00000164506.3|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43	ENSMUST00000092569.13|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43
mm39_v1_chr6_+_40448286_40448326	0.03249361091512774	Hoxa11_Hoxc12	ENSMUST00000114779.9|Ssbp1|ENSMUSG00000029911.15|single-stranded DNA binding protein 1
mm39_v1_chr6_+_91855015_91855078	0.03230196378288841	Hoxa11_Hoxc12	ENSMUST00000037783.7|Ccdc174|ENSMUSG00000034083.17|coiled-coil domain containing 174
mm39_v1_chr17_-_13981703_13981863	0.031169831570579367	Hoxa11_Hoxc12	ENSMUST00000127032.8|Tcte2|ENSMUSG00000038347.16|t-complex-associated testis expressed 2
mm39_v1_chr11_+_62349238_62349295	0.031163440659763383	Hoxa11_Hoxc12	ENSMUST00000014389.6|Pigl|ENSMUSG00000014245.9|phosphatidylinositol glycan anchor biosynthesis, class L
mm39_v1_chr7_-_135130374_135130389	0.030812922310530434	Hoxa11_Hoxc12	ENSMUST00000053716.8|Clrn3|ENSMUSG00000050866.8|clarin 3
mm39_v1_chr9_-_44318823_44318897	0.030616095595970425	Hoxa11_Hoxc12	ENSMUST00000034623.8|Trappc4|ENSMUSG00000032112.11|trafficking protein particle complex 4
mm39_v1_chr8_-_70078152_70078209	0.028568960904014177	Hoxa11_Hoxc12	ENSMUST00000121886.8|Zfp868|ENSMUSG00000060427.16|zinc finger protein 868
mm39_v1_chr13_+_98399693_98399729	0.02830252558163899	Hoxa11_Hoxc12	ENSMUST00000091356.11|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2	ENSMUST00000123924.8|Ankra2|ENSMUSG00000021661.17|ankyrin repeat, family A (RFXANK-like), 2
mm39_v1_chr11_+_3913970_3913984	0.02821253432117533	Hoxa11_Hoxc12	ENSMUST00000109985.8|Pes1|ENSMUSG00000020430.13|pescadillo ribosomal biogenesis factor 1	ENSMUST00000020705.5|Pes1|ENSMUSG00000020430.13|pescadillo ribosomal biogenesis factor 1
mm39_v1_chr11_-_94398162_94398181	0.027466048988463866	Hoxa11_Hoxc12	ENSMUST00000040692.9|Mycbpap|ENSMUSG00000039110.16|MYCBP associated protein
mm39_v1_chrX_+_55493325_55493325	0.02724073255032165	Hoxa11_Hoxc12	ENSMUST00000079663.7|Gm2174|ENSMUSG00000058932.7|predicted gene 2174
mm39_v1_chr16_-_57051727_57051768	0.02503213255473177	Hoxa11_Hoxc12	ENSMUST00000226586.2|Tbc1d23|ENSMUSG00000022749.9|TBC1 domain family, member 23
mm39_v1_chr9_+_62765362_62765420	0.02481707724276624	Hoxa11_Hoxc12	ENSMUST00000213643.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000034777.14|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000163820.3|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215870.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000214633.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4	ENSMUST00000215968.2|Calml4|ENSMUSG00000032246.15|calmodulin-like 4
mm39_v1_chr6_+_149043011_149043124	0.02301954975925778	Hoxa11_Hoxc12	ENSMUST00000179873.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000047531.16|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111548.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111547.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000134306.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000147934.4|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr1_+_182236728_182236750	0.022636605438591455	Hoxa11_Hoxc12	ENSMUST00000117245.2|Trp53bp2|ENSMUSG00000026510.11|transformation related protein 53 binding protein 2
mm39_v1_chr5_-_116162415_116162567	0.022593221058518537	Hoxa11_Hoxc12	ENSMUST00000031486.14|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit	ENSMUST00000111999.8|Prkab1|ENSMUSG00000029513.15|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm39_v1_chr5_-_86437119_86437167	0.022430323420198333	Hoxa11_Hoxc12	ENSMUST00000196462.2|Tmprss11c|ENSMUSG00000061184.9|transmembrane protease, serine 11c	ENSMUST00000059424.10|Tmprss11c|ENSMUSG00000061184.9|transmembrane protease, serine 11c
mm39_v1_chr1_+_161222980_161223013	0.022362257348898795	Hoxa11_Hoxc12	ENSMUST00000028024.5|Tnfsf4|ENSMUSG00000026700.5|tumor necrosis factor (ligand) superfamily, member 4
mm39_v1_chr17_+_22580434_22580503	0.022252907198035077	Hoxa11_Hoxc12	ENSMUST00000088765.9|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758	ENSMUST00000149699.8|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758	ENSMUST00000072477.11|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758	ENSMUST00000121315.2|Zfp758|ENSMUSG00000044501.18|zinc finger protein 758
mm39_v1_chr14_+_55909692_55909755	0.021658347047618987	Hoxa11_Hoxc12	ENSMUST00000002397.7|Gmpr2|ENSMUSG00000002326.7|guanosine monophosphate reductase 2
mm39_v1_chr18_-_38342815_38342839	0.021127109133784325	Hoxa11_Hoxc12	ENSMUST00000057185.13|Pcdh1|ENSMUSG00000051375.16|protocadherin 1
mm39_v1_chr1_+_74752710_74752733	0.020825888320322214	Hoxa11_Hoxc12	ENSMUST00000027356.7|Cyp27a1|ENSMUSG00000026170.7|cytochrome P450, family 27, subfamily a, polypeptide 1
mm39_v1_chr13_-_12479804_12479842	0.020497862756685	Hoxa11_Hoxc12	ENSMUST00000124888.8|Lgals8|ENSMUSG00000057554.14|lectin, galactose binding, soluble 8
mm39_v1_chr16_+_33614715_33614737	0.020214712366732668	Hoxa11_Hoxc12	ENSMUST00000023520.7|Muc13|ENSMUSG00000022824.13|mucin 13, epithelial transmembrane
mm39_v1_chr13_+_109822527_109822690	0.02008331958326913	Hoxa11_Hoxc12	ENSMUST00000074103.12|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr3_+_126390951_126390964	0.019903964239724046	Hoxa11_Hoxc12	ENSMUST00000171289.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr19_-_13075176_13075255	0.01983768423990749	Hoxa11_Hoxc12	ENSMUST00000208913.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457	ENSMUST00000215229.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr19_-_13074935_13074935	0.01960582947494696	Hoxa11_Hoxc12	ENSMUST00000214561.3|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr3_+_126391046_126391076	0.0192466831570369	Hoxa11_Hoxc12	ENSMUST00000106401.8|Camk2d|ENSMUSG00000053819.17|calcium/calmodulin-dependent protein kinase II, delta
mm39_v1_chr1_-_74163575_74163626	0.018872482768800707	Hoxa11_Hoxc12	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr11_+_77107006_77107113	0.017699868400664533	Hoxa11_Hoxc12	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr9_+_106158212_106158260	0.017003289199931205	Hoxa11_Hoxc12	ENSMUST00000072206.14|Poc1a|ENSMUSG00000023345.18|POC1 centriolar protein A
mm39_v1_chr6_+_42263609_42263627	0.01686756814719043	Hoxa11_Hoxc12	ENSMUST00000238845.2|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1	ENSMUST00000031894.13|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
mm39_v1_chr11_+_60370741_60370741	0.016596829808707234	Hoxa11_Hoxc12	ENSMUST00000126522.4|Myo15|ENSMUSG00000042678.18|myosin XV
mm39_v1_chr18_+_37466877_37466999	0.015536663799298758	Hoxa11_Hoxc12	ENSMUST00000194655.2|Pcdhb6|ENSMUSG00000051678.5|protocadherin beta 6	ENSMUST00000061717.4|Pcdhb6|ENSMUSG00000051678.5|protocadherin beta 6
mm39_v1_chr14_-_29443792_29443842	0.015119519307400742	Hoxa11_Hoxc12	ENSMUST00000022567.9|Cacna2d3|ENSMUSG00000021991.10|calcium channel, voltage-dependent, alpha2/delta subunit 3
mm39_v1_chr6_-_29216276_29216291	0.015038018900766175	Hoxa11_Hoxc12	ENSMUST00000162215.8|Impdh1|ENSMUSG00000003500.14|inosine monophosphate dehydrogenase 1
mm39_v1_chr6_+_149043136_149043162	0.014840650472694856	Hoxa11_Hoxc12	ENSMUST00000166416.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111551.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr4_+_109092459_109092459	0.014653170957511213	Hoxa11_Hoxc12	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr7_-_119744509_119744515	0.014541311383566699	Hoxa11_Hoxc12	ENSMUST00000208874.2|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2	ENSMUST00000033207.6|Zp2|ENSMUSG00000030911.8|zona pellucida glycoprotein 2
mm39_v1_chr7_+_92729067_92729078	0.014286316189243678	Hoxa11_Hoxc12	ENSMUST00000051179.12|Fam181b|ENSMUSG00000051515.12|family with sequence similarity 181, member B
mm39_v1_chr19_-_33602652_33602652	0.013792383983280717	Hoxa11_Hoxc12	ENSMUST00000124230.3|Gm8978|ENSMUSG00000086812.3|predicted gene 8978
mm39_v1_chr11_-_99987051_99987068	0.013743253055560659	Hoxa11_Hoxc12	ENSMUST00000103127.4|Krt35|ENSMUSG00000048013.10|keratin 35
mm39_v1_chr11_+_105885461_105885504	0.013646032472369856	Hoxa11_Hoxc12	ENSMUST00000190995.2|Ace3|ENSMUSG00000101605.2|angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
mm39_v1_chr14_+_52680447_52680508	0.01323384084929843	Hoxa11_Hoxc12	ENSMUST00000205900.3|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000215030.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206100.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206718.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509
mm39_v1_chr19_+_29923182_29923199	0.013095865505470986	Hoxa11_Hoxc12	ENSMUST00000025724.9|Il33|ENSMUSG00000024810.17|interleukin 33
mm39_v1_chr1_-_128256048_128256063	0.012737963459111297	Hoxa11_Hoxc12	ENSMUST00000073490.7|Lct|ENSMUSG00000026354.9|lactase
mm39_v1_chr17_-_24674252_24674366	0.0125478820498216	Hoxa11_Hoxc12	ENSMUST00000056032.9|E4f1|ENSMUSG00000024137.10|E4F transcription factor 1	ENSMUST00000226941.2|E4f1|ENSMUSG00000024137.10|E4F transcription factor 1
mm39_v1_chr18_+_36877709_36877813	0.01202560886913876	Hoxa11_Hoxc12	ENSMUST00000007042.6|Ik|ENSMUSG00000024474.8|IK cytokine	ENSMUST00000237095.2|Ik|ENSMUSG00000024474.8|IK cytokine
mm39_v1_chr1_+_161796854_161796881	0.011971419554000948	Hoxa11_Hoxc12	ENSMUST00000160881.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C	ENSMUST00000159648.2|Pigc|ENSMUSG00000026698.9|phosphatidylinositol glycan anchor biosynthesis, class C
mm39_v1_chr2_+_23097482_23097509	0.011738867559671191	Hoxa11_Hoxc12	ENSMUST00000028113.10|Potegl|ENSMUSG00000026774.12|POTE ankyrin domain family, member G like	ENSMUST00000114505.2|Potegl|ENSMUSG00000026774.12|POTE ankyrin domain family, member G like
mm39_v1_chr9_+_38119661_38119661	0.011723702092452888	Hoxa11_Hoxc12	ENSMUST00000211975.3|Olfr893|ENSMUSG00000093901.4|olfactory receptor 893
mm39_v1_chr1_+_106908709_106908715	0.011660233599559333	Hoxa11_Hoxc12	ENSMUST00000027564.8|Serpinb13|ENSMUSG00000048775.11|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13
mm39_v1_chr17_-_36983111_36983111	0.011639940787937739	Hoxa11_Hoxc12	ENSMUST00000041662.3|H2-M1|ENSMUSG00000037334.3|histocompatibility 2, M region locus 1
mm39_v1_chr3_-_92627651_92627666	0.01133703277837599	Hoxa11_Hoxc12	ENSMUST00000047153.4|Lce1f|ENSMUSG00000042124.6|late cornified envelope 1F
mm39_v1_chr11_-_23845207_23845280	0.01124022648160965	Hoxa11_Hoxc12	ENSMUST00000102863.3|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma	ENSMUST00000020513.10|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma
mm39_v1_chr14_+_27344385_27344500	0.010446569306106773	Hoxa11_Hoxc12	ENSMUST00000210135.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000090302.6|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000211087.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chrX_+_20230720_20230864	0.010368425822779975	Hoxa11_Hoxc12	ENSMUST00000033372.13|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog	ENSMUST00000115391.8|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog	ENSMUST00000115387.8|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog
mm39_v1_chr11_+_59197746_59197761	0.010202150146155563	Hoxa11_Hoxc12	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr13_-_54897660_54897706	0.010137974805033974	Hoxa11_Hoxc12	ENSMUST00000135343.2|Gprin1|ENSMUSG00000069227.5|G protein-regulated inducer of neurite outgrowth 1
mm39_v1_chr15_-_101759212_101759229	0.009592861747860693	Hoxa11_Hoxc12	ENSMUST00000023790.5|Krt1|ENSMUSG00000046834.8|keratin 1
mm39_v1_chr13_+_65660492_65660492	0.009132348063446294	Hoxa11_Hoxc12	ENSMUST00000081471.3|Gm10139|ENSMUSG00000063905.3|predicted gene 10139
mm39_v1_chr16_-_19132814_19132814	0.009037752527094442	Hoxa11_Hoxc12	ENSMUST00000216157.2|Olfr164|ENSMUSG00000050742.6|olfactory receptor 164
mm39_v1_chr7_-_142215595_142215617	0.008857258531231801	Hoxa11_Hoxc12	ENSMUST00000145896.3|Igf2|ENSMUSG00000048583.17|insulin-like growth factor 2
mm39_v1_chr10_-_120815232_120815279	0.008711761548389757	Hoxa11_Hoxc12	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr19_+_58931847_58931873	0.008573134214552764	Hoxa11_Hoxc12	ENSMUST00000054280.10|Eno4|ENSMUSG00000048029.11|enolase 4	ENSMUST00000200910.4|Eno4|ENSMUSG00000048029.11|enolase 4
mm39_v1_chr9_+_106158549_106158621	0.008443928933982004	Hoxa11_Hoxc12	ENSMUST00000191434.2|Poc1a|ENSMUSG00000023345.18|POC1 centriolar protein A
mm39_v1_chr4_-_144291704_144291771	0.008416828727458942	Hoxa11_Hoxc12	ENSMUST00000105748.2|Aadacl4fm2|ENSMUSG00000078506.2|AADACL4 family member 2
mm39_v1_chr7_-_41098120_41098120	0.008143662817966055	Hoxa11_Hoxc12	ENSMUST00000233793.2|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57	ENSMUST00000233555.2|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57	ENSMUST00000165029.3|Vmn2r57|ENSMUSG00000066537.6|vomeronasal 2, receptor 57
mm39_v1_chr11_+_117375194_117375194	0.007930743706683988	Hoxa11_Hoxc12	ENSMUST00000092394.4|Gm11733|ENSMUSG00000069588.4|predicted gene 11733
mm39_v1_chr15_+_10177709_10177741	0.007906696224326956	Hoxa11_Hoxc12	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr1_-_136888118_136888234	0.007619069790166802	Hoxa11_Hoxc12	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chr17_+_75772567_75772586	0.0076091763203454486	Hoxa11_Hoxc12	ENSMUST00000234660.2|Rasgrp3|ENSMUSG00000071042.13|RAS, guanyl releasing protein 3
mm39_v1_chr2_+_88015223_88015223	0.00728472055635535	Hoxa11_Hoxc12	ENSMUST00000079599.4|Olfr1168|ENSMUSG00000061342.6|olfactory receptor 1168
mm39_v1_chr3_-_144555062_144555118	0.007215333331330796	Hoxa11_Hoxc12	ENSMUST00000159989.2|Clca3b|ENSMUSG00000037033.10|chloride channel accessory 3B
mm39_v1_chr5_+_149942140_149942264	0.007024607175369858	Hoxa11_Hoxc12	ENSMUST00000065745.10|Rxfp2|ENSMUSG00000053368.14|relaxin/insulin-like family peptide receptor 2	ENSMUST00000110496.5|Rxfp2|ENSMUSG00000053368.14|relaxin/insulin-like family peptide receptor 2	ENSMUST00000201612.2|Rxfp2|ENSMUSG00000053368.14|relaxin/insulin-like family peptide receptor 2
mm39_v1_chr10_+_40559249_40559278	0.007015871022183013	Hoxa11_Hoxc12	ENSMUST00000058747.4|Mettl24|ENSMUSG00000045555.4|methyltransferase like 24
mm39_v1_chr19_+_12647803_12647938	0.0069285859068315735	Hoxa11_Hoxc12	ENSMUST00000207341.3|Olfr1442|ENSMUSG00000044441.6|olfactory receptor 1442	ENSMUST00000208494.3|Olfr1442|ENSMUSG00000044441.6|olfactory receptor 1442	ENSMUST00000208657.3|Olfr1442|ENSMUSG00000044441.6|olfactory receptor 1442
mm39_v1_chr9_+_21231994_21232102	0.006870704951552902	Hoxa11_Hoxc12	ENSMUST00000217461.2|Slc44a2|ENSMUSG00000057193.9|solute carrier family 44, member 2
mm39_v1_chr16_-_16418397_16418439	0.006838298675216847	Hoxa11_Hoxc12	ENSMUST00000159542.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr2_+_88479038_88479038	0.006404558583880341	Hoxa11_Hoxc12	ENSMUST00000120518.4|Olfr1192-ps1|ENSMUSG00000111590.3|olfactory receptor 1192, pseudogene 1
mm39_v1_chr2_+_20742115_20742152	0.006352698817919937	Hoxa11_Hoxc12	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr2_+_22958179_22958253	0.006320120788806129	Hoxa11_Hoxc12	ENSMUST00000227663.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000028121.15|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000227809.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5	ENSMUST00000144088.2|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr2_+_87574098_87574098	0.00630527188556851	Hoxa11_Hoxc12	ENSMUST00000214723.2|Olfr1140|ENSMUSG00000068817.6|olfactory receptor 1140
mm39_v1_chr4_-_150087587_150087607	0.00613243682274229	Hoxa11_Hoxc12	ENSMUST00000084117.13|H6pd|ENSMUSG00000028980.15|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm39_v1_chr17_-_65946817_65946834	0.006057607463490984	Hoxa11_Hoxc12	ENSMUST00000233702.2|Txndc2|ENSMUSG00000050612.7|thioredoxin domain containing 2 (spermatozoa)
mm39_v1_chr11_+_96194333_96194378	0.006034720537657385	Hoxa11_Hoxc12	ENSMUST00000049272.5|Hoxb5|ENSMUSG00000038700.5|homeobox B5
mm39_v1_chr4_+_39450265_39450332	0.005716472317283329	Hoxa11_Hoxc12	ENSMUST00000029955.5|1700009N14Rik|ENSMUSG00000028287.5|RIKEN cDNA 1700009N14 gene
mm39_v1_chr13_+_24023428_24023453	0.005508787621975666	Hoxa11_Hoxc12	ENSMUST00000091698.12|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3	ENSMUST00000110422.3|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3	ENSMUST00000166467.9|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3
mm39_v1_chr11_+_49321254_49321254	0.0055037541397390255	Hoxa11_Hoxc12	ENSMUST00000203369.2|Olfr1389|ENSMUSG00000107573.3|olfactory receptor 1389
mm39_v1_chr15_-_77854988_77855019	0.00528245104143542	Hoxa11_Hoxc12	ENSMUST00000100484.6|Eif3d|ENSMUSG00000016554.10|eukaryotic translation initiation factor 3, subunit D
mm39_v1_chr4_-_34756222_34756269	0.005201021318209536	Hoxa11_Hoxc12	ENSMUST00000095129.3|Gm136|ENSMUSG00000071015.3|predicted gene 136
mm39_v1_chr13_-_22403990_22403990	0.005196308138866979	Hoxa11_Hoxc12	ENSMUST00000057516.2|Vmn1r193|ENSMUSG00000046932.3|vomeronasal 1 receptor 193
mm39_v1_chr6_-_55658242_55658255	0.005156559366216174	Hoxa11_Hoxc12	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr13_+_23433408_23433408	0.005146111468324462	Hoxa11_Hoxc12	ENSMUST00000091719.2|Vmn1r223|ENSMUSG00000069280.3|vomeronasal 1 receptor 223
mm39_v1_chr11_+_81936531_81936547	0.005103897367687695	Hoxa11_Hoxc12	ENSMUST00000021011.3|Ccl7|ENSMUSG00000035373.3|chemokine (C-C motif) ligand 7
mm39_v1_chr7_+_107411470_107411470	0.005096177093417008	Hoxa11_Hoxc12	ENSMUST00000208563.3|Olfr467|ENSMUSG00000066242.4|olfactory receptor 467	ENSMUST00000214253.2|Olfr467|ENSMUSG00000066242.4|olfactory receptor 467
mm39_v1_chr2_-_86088672_86088672	0.005074999229725405	Hoxa11_Hoxc12	ENSMUST00000216185.3|Olfr1049|ENSMUSG00000075194.4|olfactory receptor 1049
mm39_v1_chr15_+_100321074_100321074	0.005057024328573151	Hoxa11_Hoxc12	ENSMUST00000148928.2|Gm5475|ENSMUSG00000087444.2|predicted gene 5475
mm39_v1_chr18_+_42527604_42527640	0.005055839559754261	Hoxa11_Hoxc12	ENSMUST00000025374.4|Pou4f3|ENSMUSG00000024497.5|POU domain, class 4, transcription factor 3
mm39_v1_chr19_+_58748132_58748177	0.00503108775750125	Hoxa11_Hoxc12	ENSMUST00000026081.5|Pnliprp2|ENSMUSG00000025091.5|pancreatic lipase-related protein 2
mm39_v1_chr11_-_65050716_65050717	0.005028891668318828	Hoxa11_Hoxc12	ENSMUST00000020855.5|1700086D15Rik|ENSMUSG00000020548.11|RIKEN cDNA 1700086D15 gene	ENSMUST00000108696.7|1700086D15Rik|ENSMUSG00000020548.11|RIKEN cDNA 1700086D15 gene
mm39_v1_chr13_+_24023386_24023425	0.004966725952700597	Hoxa11_Hoxc12	ENSMUST00000039721.14|Slc17a3|ENSMUSG00000036083.16|solute carrier family 17 (sodium phosphate), member 3
mm39_v1_chr2_-_89774457_89774457	0.00481897558939267	Hoxa11_Hoxc12	ENSMUST00000090695.3|Olfr1259|ENSMUSG00000068806.6|olfactory receptor 1259
mm39_v1_chr8_+_84016970_84016987	0.004709362367816296	Hoxa11_Hoxc12	ENSMUST00000034146.5|Ucp1|ENSMUSG00000031710.5|uncoupling protein 1 (mitochondrial, proton carrier)
mm39_v1_chr9_+_40785277_40785423	0.0044760568509252035	Hoxa11_Hoxc12	ENSMUST00000067375.5|Bsx|ENSMUSG00000054360.5|brain specific homeobox
mm39_v1_chr15_-_100321973_100322054	0.004370198155303493	Hoxa11_Hoxc12	ENSMUST00000154676.2|Slc11a2|ENSMUSG00000023030.17|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm39_v1_chr5_+_32768515_32768589	0.004307537819569118	Hoxa11_Hoxc12	ENSMUST00000202543.4|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase	ENSMUST00000072311.13|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase
mm39_v1_chr4_-_62069046_62069100	0.004274229201346168	Hoxa11_Hoxc12	ENSMUST00000077719.4|Mup21|ENSMUSG00000066153.3|major urinary protein 21
mm39_v1_chr2_-_86086061_86086061	0.004226097736386532	Hoxa11_Hoxc12	ENSMUST00000099899.3|Olfr1049|ENSMUSG00000075194.4|olfactory receptor 1049
mm39_v1_chrX_+_35664933_35664933	0.004106116081026607	Hoxa11_Hoxc12	ENSMUST00000115253.3|Gm6268|ENSMUSG00000079642.3|predicted gene 6268
mm39_v1_chr7_-_107886331_107886331	0.003934299081598303	Hoxa11_Hoxc12	ENSMUST00000210114.3|Olfr490|ENSMUSG00000109884.4|olfactory receptor 490
mm39_v1_chr6_+_83985495_83985572	0.0038941765660297375	Hoxa11_Hoxc12	ENSMUST00000113821.8|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr8_+_124750133_124750133	0.003789931672088204	Hoxa11_Hoxc12	ENSMUST00000034457.9|Urb2|ENSMUSG00000031976.15|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm39_v1_chr17_-_20785018_20785018	0.0037735211408499738	Hoxa11_Hoxc12	ENSMUST00000167093.3|Vmn2r109|ENSMUSG00000090572.3|vomeronasal 2, receptor 109
mm39_v1_chr10_+_93390740_93390748	0.003725077041769296	Hoxa11_Hoxc12	ENSMUST00000132214.8|Ccdc38|ENSMUSG00000036168.16|coiled-coil domain containing 38
mm39_v1_chr8_+_94954280_94954301	0.0034918655186484513	Hoxa11_Hoxc12	ENSMUST00000109547.2|Nup93|ENSMUSG00000032939.15|nucleoporin 93
mm39_v1_chr4_+_144340236_144340277	0.0034866888230622186	Hoxa11_Hoxc12	ENSMUST00000094510.4|Aadacl4|ENSMUSG00000070609.4|arylacetamide deacetylase like 4
mm39_v1_chr8_+_11890474_11890532	0.0032688440656664067	Hoxa11_Hoxc12	ENSMUST00000033909.14|Tex29|ENSMUSG00000031512.16|testis expressed 29	ENSMUST00000209692.2|Tex29|ENSMUSG00000031512.16|testis expressed 29
mm39_v1_chr2_-_89980380_89980380	0.0030711570459776285	Hoxa11_Hoxc12	ENSMUST00000099754.5|Olfr1270|ENSMUSG00000075065.6|olfactory receptor 1270
mm39_v1_chr9_+_53678801_53678830	0.00302894832833941	Hoxa11_Hoxc12	ENSMUST00000048670.10|Slc35f2|ENSMUSG00000042195.10|solute carrier family 35, member F2
mm39_v1_chr4_-_96673423_96673423	0.0030103003976240444	Hoxa11_Hoxc12	ENSMUST00000107071.2|Gm12695|ENSMUSG00000078639.2|predicted gene 12695
mm39_v1_chr18_-_43526411_43526447	0.0029568961006275034	Hoxa11_Hoxc12	ENSMUST00000025379.14|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr2_+_87576198_87576198	0.0028846279035097877	Hoxa11_Hoxc12	ENSMUST00000217572.2|Olfr1140|ENSMUSG00000068817.6|olfactory receptor 1140
mm39_v1_chr17_+_34636321_34636398	0.00264703378532718	Hoxa11_Hoxc12	ENSMUST00000142317.8|BC051142|ENSMUSG00000057246.17|cDNA sequence BC051142
mm39_v1_chr13_-_63712349_63712349	0.0026110549653040375	Hoxa11_Hoxc12	ENSMUST00000192155.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr18_+_65276629_65276673	0.002480350144691835	Hoxa11_Hoxc12	ENSMUST00000235310.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr10_+_89906956_89906982	0.002459476997954203	Hoxa11_Hoxc12	ENSMUST00000183109.2|Anks1b|ENSMUSG00000058589.15|ankyrin repeat and sterile alpha motif domain containing 1B
mm39_v1_chr16_+_65320163_65320200	0.0024494250476271586	Hoxa11_Hoxc12	ENSMUST00000184525.2|Pou1f1|ENSMUSG00000004842.19|POU domain, class 1, transcription factor 1
mm39_v1_chr4_+_109092829_109092829	0.0022301461501064005	Hoxa11_Hoxc12	ENSMUST00000030285.8|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr11_-_4390745_4390745	0.0021141870863506888	Hoxa11_Hoxc12	ENSMUST00000109948.8|Hormad2|ENSMUSG00000020419.12|HORMA domain containing 2
mm39_v1_chr6_+_42263644_42263790	0.0020907824219676668	Hoxa11_Hoxc12	ENSMUST00000163936.8|Clcn1|ENSMUSG00000029862.17|chloride channel, voltage-sensitive 1
mm39_v1_chr2_+_111327525_111327525	0.0020149942110306825	Hoxa11_Hoxc12	ENSMUST00000121345.4|Olfr1291-ps1|ENSMUSG00000108891.5|olfactory receptor 1291, pseudogene 1
mm39_v1_chr2_+_166647426_166647525	0.001979675360269233	Hoxa11_Hoxc12	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chr4_-_138095277_138095319	0.0019481907793910437	Hoxa11_Hoxc12	ENSMUST00000030535.4|Cda|ENSMUSG00000028755.4|cytidine deaminase
mm39_v1_chrX_+_132809166_132809180	0.001815764073532494	Hoxa11_Hoxc12	ENSMUST00000033606.15|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr16_-_19349668_19349668	0.0017986656425264254	Hoxa11_Hoxc12	ENSMUST00000078554.2|Olfr168|ENSMUSG00000061361.3|olfactory receptor 168
mm39_v1_chr6_-_68784692_68784743	0.001773563705616935	Hoxa11_Hoxc12	ENSMUST00000103334.4|Igkv4-90|ENSMUSG00000076533.4|immunoglobulin kappa chain variable 4-90
mm39_v1_chr5_+_67126304_67126475	0.0016862751425022393	Hoxa11_Hoxc12	ENSMUST00000132991.5|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr17_-_20455134_20455134	0.0016407572957238307	Hoxa11_Hoxc12	ENSMUST00000167382.2|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105
mm39_v1_chr9_+_19351562_19351562	0.0015573288354758	Hoxa11_Hoxc12	ENSMUST00000217273.2|Olfr849|ENSMUSG00000052182.5|olfactory receptor 849
mm39_v1_chr7_+_139827152_139827294	0.0013651791436989258	Hoxa11_Hoxc12	ENSMUST00000164583.8|Scart2|ENSMUSG00000054672.14|scavenger receptor family member expressed on T cells 2	ENSMUST00000093984.3|Scart2|ENSMUSG00000054672.14|scavenger receptor family member expressed on T cells 2
mm39_v1_chr2_-_130471891_130471958	0.0011320337270398302	Hoxa11_Hoxc12	ENSMUST00000110262.3|Fastkd5|ENSMUSG00000079043.4|FAST kinase domains 5	ENSMUST00000028761.5|Ubox5|ENSMUSG00000027300.11|U box domain containing 5
mm39_v1_chr1_-_173054760_173054814	0.0011112207523085464	Hoxa11_Hoxc12	ENSMUST00000193017.2|Fcer1a|ENSMUSG00000005339.11|Fc receptor, IgE, high affinity I, alpha polypeptide	ENSMUST00000049706.11|Fcer1a|ENSMUSG00000005339.11|Fc receptor, IgE, high affinity I, alpha polypeptide
mm39_v1_chr5_+_128677863_128677912	0.0009692283817680544	Hoxa11_Hoxc12	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chrX_+_132809189_132809213	0.0009339142512601186	Hoxa11_Hoxc12	ENSMUST00000113304.2|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr3_-_92493507_92493513	0.0008962252450980217	Hoxa11_Hoxc12	ENSMUST00000194965.6|Smcp|ENSMUSG00000074435.11|sperm mitochondria-associated cysteine-rich protein
mm39_v1_chr15_+_102845192_102845269	0.0006478798109975843	Hoxa11_Hoxc12	ENSMUST00000055562.3|Hoxc12|ENSMUSG00000050328.3|homeobox C12
mm39_v1_chr16_-_26808724_26808724	0.000633555329540346	Hoxa11_Hoxc12	ENSMUST00000089832.6|Gmnc|ENSMUSG00000068428.8|geminin coiled-coil domain containing
mm39_v1_chr3_+_145855929_145856002	8.857326724827636e-05	Hoxa11_Hoxc12	ENSMUST00000098524.5|Mcoln2|ENSMUSG00000011008.14|mucolipin 2
