mm39_v1_chr15_+_6552270_6552346	0.25949729258507487	Hoxa9_Hoxb9	ENSMUST00000226412.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr7_-_12468931_12468931	0.24963513596821107	Hoxa9_Hoxb9	ENSMUST00000233304.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233373.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233874.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233902.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56
mm39_v1_chr10_+_129153986_129153986	0.1969592623221769	Hoxa9_Hoxb9	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr9_+_38119661_38119661	0.1875190720288147	Hoxa9_Hoxb9	ENSMUST00000211975.3|Olfr893|ENSMUSG00000093901.4|olfactory receptor 893
mm39_v1_chr15_+_3300249_3300488	0.13895493758431995	Hoxa9_Hoxb9	ENSMUST00000082424.12|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000159158.9|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000159216.10|Selenop|ENSMUSG00000064373.14|selenoprotein P	ENSMUST00000160311.3|Selenop|ENSMUSG00000064373.14|selenoprotein P
mm39_v1_chr14_-_33700719_33700748	0.12432628751724599	Hoxa9_Hoxb9	ENSMUST00000166737.2|Zfp488|ENSMUSG00000044519.9|zinc finger protein 488
mm39_v1_chr10_-_40018243_40018256	0.11788924700815367	Hoxa9_Hoxb9	ENSMUST00000092566.8|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10	ENSMUST00000213488.2|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm39_v1_chr19_-_7319157_7319195	0.11321343080270171	Hoxa9_Hoxb9	ENSMUST00000164205.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000165286.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000168324.2|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000032557.15|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chrX_-_49108236_49108236	0.11229628225916277	Hoxa9_Hoxb9	ENSMUST00000213556.3|Olfr1323|ENSMUSG00000050504.4|olfactory receptor 1323	ENSMUST00000213463.2|Olfr1323|ENSMUSG00000050504.4|olfactory receptor 1323
mm39_v1_chr7_-_12342715_12342715	0.10991796404258401	Hoxa9_Hoxb9	ENSMUST00000233892.2|Vmn2r53|ENSMUSG00000096002.3|vomeronasal 2, receptor 53
mm39_v1_chr8_-_5155347_5155358	0.10883140115096132	Hoxa9_Hoxb9	ENSMUST00000023835.3|Slc10a2|ENSMUSG00000023073.3|solute carrier family 10, member 2
mm39_v1_chr2_-_36752671_36752672	0.10542332451967479	Hoxa9_Hoxb9	ENSMUST00000213676.2|Olfr351|ENSMUSG00000075383.5|olfactory receptor 351	ENSMUST00000215137.2|Olfr351|ENSMUSG00000075383.5|olfactory receptor 351
mm39_v1_chr2_+_85545763_85545763	0.0997363331033974	Hoxa9_Hoxb9	ENSMUST00000216443.3|Olfr1009|ENSMUSG00000043226.6|olfactory receptor 1009
mm39_v1_chr2_+_88479038_88479038	0.08946893869964306	Hoxa9_Hoxb9	ENSMUST00000120518.4|Olfr1192-ps1|ENSMUSG00000111590.3|olfactory receptor 1192, pseudogene 1
mm39_v1_chr2_-_51039112_51039127	0.08810824966509995	Hoxa9_Hoxb9	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chr7_+_110367375_110367413	0.0814551328532408	Hoxa9_Hoxb9	ENSMUST00000170374.8|Ampd3|ENSMUSG00000005686.18|adenosine monophosphate deaminase 3
mm39_v1_chr13_-_22689551_22689551	0.0803411984192348	Hoxa9_Hoxb9	ENSMUST00000228020.2|Vmn1r202|ENSMUSG00000094379.3|vomeronasal 1 receptor 202
mm39_v1_chr11_-_109188917_109188944	0.07585677390844466	Hoxa9_Hoxb9	ENSMUST00000106704.3|Rgs9|ENSMUSG00000020599.14|regulator of G-protein signaling 9
mm39_v1_chr1_+_59296065_59296066	0.07406593729480698	Hoxa9_Hoxb9	ENSMUST00000160662.8|Cdk15|ENSMUSG00000026023.17|cyclin-dependent kinase 15	ENSMUST00000114248.3|Cdk15|ENSMUSG00000026023.17|cyclin-dependent kinase 15
mm39_v1_chr2_+_22512195_22512217	0.06590874944884262	Hoxa9_Hoxb9	ENSMUST00000028123.4|Gad2|ENSMUSG00000026787.4|glutamic acid decarboxylase 2
mm39_v1_chr19_+_13208692_13208692	0.06539354393115769	Hoxa9_Hoxb9	ENSMUST00000207246.4|Olfr1463|ENSMUSG00000096365.5|olfactory receptor 1463
mm39_v1_chr17_-_29226886_29226937	0.0634266109355925	Hoxa9_Hoxb9	ENSMUST00000232723.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr4_+_115594951_115594993	0.05955030220555044	Hoxa9_Hoxb9	ENSMUST00000106522.9|Efcab14|ENSMUSG00000034210.15|EF-hand calcium binding domain 14
mm39_v1_chr10_+_111342147_111342278	0.058023866025214865	Hoxa9_Hoxb9	ENSMUST00000164773.2|Phlda1|ENSMUSG00000020205.9|pleckstrin homology like domain, family A, member 1
mm39_v1_chr10_+_3822667_3822789	0.0578559654230215	Hoxa9_Hoxb9	ENSMUST00000136671.8|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	ENSMUST00000042438.13|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm39_v1_chr3_+_66892979_66893026	0.05376979615485777	Hoxa9_Hoxb9	ENSMUST00000162362.8|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000065074.14|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000065047.13|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1
mm39_v1_chr17_+_33857030_33857086	0.04919713246390169	Hoxa9_Hoxb9	ENSMUST00000052079.8|Pram1|ENSMUSG00000032739.17|PML-RAR alpha-regulated adaptor molecule 1
mm39_v1_chrX_+_158623460_158623477	0.047636819851688265	Hoxa9_Hoxb9	ENSMUST00000112451.8|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1	ENSMUST00000112453.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr4_-_119217079_119217095	0.044793842009920766	Hoxa9_Hoxb9	ENSMUST00000143494.3|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30	ENSMUST00000154606.9|Ccdc30|ENSMUSG00000028637.17|coiled-coil domain containing 30
mm39_v1_chr5_+_137786031_137786069	0.04197914228235385	Hoxa9_Hoxb9	ENSMUST00000035852.14|Zcwpw1|ENSMUSG00000037108.14|zinc finger, CW type with PWWP domain 1
mm39_v1_chr18_+_38809771_38809771	0.04192795600670419	Hoxa9_Hoxb9	ENSMUST00000134388.2|9630014M24Rik|ENSMUSG00000118257.2|RIKEN cDNA 9630014M24 gene	ENSMUST00000148850.8|Arhgap26|ENSMUSG00000118193.2|Rho GTPase activating protein 26
mm39_v1_chr9_+_38259707_38259707	0.04100587701621572	Hoxa9_Hoxb9	ENSMUST00000217063.2|Olfr898|ENSMUSG00000094588.3|olfactory receptor 898
mm39_v1_chr17_+_38456172_38456284	0.04099349036157248	Hoxa9_Hoxb9	ENSMUST00000215078.3|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133	ENSMUST00000215549.3|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133	ENSMUST00000173610.2|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133
mm39_v1_chr4_+_115594918_115594949	0.040825608229126	Hoxa9_Hoxb9	ENSMUST00000106525.9|Efcab14|ENSMUSG00000034210.15|EF-hand calcium binding domain 14
mm39_v1_chr5_+_63969706_63969891	0.04061571556760875	Hoxa9_Hoxb9	ENSMUST00000081747.8|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene	ENSMUST00000196575.5|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene
mm39_v1_chr17_+_18801989_18801989	0.04041321157015178	Hoxa9_Hoxb9	ENSMUST00000165692.8|Vmn2r96|ENSMUSG00000091679.10|vomeronasal 2, receptor 96
mm39_v1_chr8_-_70591746_70591782	0.039251684812685164	Hoxa9_Hoxb9	ENSMUST00000212320.2|Rfxank|ENSMUSG00000036120.11|regulatory factor X-associated ankyrin-containing protein
mm39_v1_chr2_-_32976378_32976452	0.03861113243607235	Hoxa9_Hoxb9	ENSMUST00000049618.9|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr19_-_7319211_7319228	0.037505096406177524	Hoxa9_Hoxb9	ENSMUST00000171393.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr2_-_88768449_88768455	0.03741863234260697	Hoxa9_Hoxb9	ENSMUST00000215205.2|Olfr1211|ENSMUSG00000075112.3|olfactory receptor 1211	ENSMUST00000213412.2|Olfr1211|ENSMUSG00000075112.3|olfactory receptor 1211
mm39_v1_chr14_+_20724378_20724497	0.036612723986505044	Hoxa9_Hoxb9	ENSMUST00000224492.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000223751.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000225108.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000224754.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr2_+_111984716_111984717	0.03538581179874315	Hoxa9_Hoxb9	ENSMUST00000214063.2|Olfr1318|ENSMUSG00000049758.8|olfactory receptor 1318	ENSMUST00000217533.2|Olfr1318|ENSMUSG00000049758.8|olfactory receptor 1318
mm39_v1_chr9_-_40004854_40004891	0.035349487796260876	Hoxa9_Hoxb9	ENSMUST00000050996.6|Olfr983|ENSMUSG00000044205.8|olfactory receptor 983	ENSMUST00000213087.4|Olfr983|ENSMUSG00000044205.8|olfactory receptor 983
mm39_v1_chr14_-_47426863_47426877	0.03396514321712479	Hoxa9_Hoxb9	ENSMUST00000089959.7|Gch1|ENSMUSG00000037580.11|GTP cyclohydrolase 1
mm39_v1_chr8_-_70591799_70591812	0.03371675083552868	Hoxa9_Hoxb9	ENSMUST00000075724.9|Rfxank|ENSMUSG00000036120.11|regulatory factor X-associated ankyrin-containing protein
mm39_v1_chr11_+_50905063_50905184	0.03354076262596072	Hoxa9_Hoxb9	ENSMUST00000217480.2|Olfr54|ENSMUSG00000059397.3|olfactory receptor 54	ENSMUST00000215409.2|Olfr54|ENSMUSG00000059397.3|olfactory receptor 54
mm39_v1_chr9_-_101128976_101129003	0.033259764680180354	Hoxa9_Hoxb9	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr2_-_45002902_45003021	0.03271352019425184	Hoxa9_Hoxb9	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr11_-_79394904_79394915	0.032658325684663994	Hoxa9_Hoxb9	ENSMUST00000164465.3|Omg|ENSMUSG00000049612.11|oligodendrocyte myelin glycoprotein
mm39_v1_chr7_+_43339842_43339842	0.032401554011622105	Hoxa9_Hoxb9	ENSMUST00000056329.7|Klk14|ENSMUSG00000044737.7|kallikrein related-peptidase 14
mm39_v1_chr7_+_44545501_44545676	0.03152230169372746	Hoxa9_Hoxb9	ENSMUST00000071207.14|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000209132.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000207069.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000209039.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000207939.3|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000207485.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000208179.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein
mm39_v1_chr17_-_29226965_29226976	0.028469593319191407	Hoxa9_Hoxb9	ENSMUST00000009138.13|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38	ENSMUST00000119274.3|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr2_-_32977182_32977265	0.027664079828576143	Hoxa9_Hoxb9	ENSMUST00000102810.10|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr9_-_101076198_101076278	0.027373578897513212	Hoxa9_Hoxb9	ENSMUST00000066773.9|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr13_+_83723743_83723796	0.027170704695404745	Hoxa9_Hoxb9	ENSMUST00000198217.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000199210.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr17_-_29226700_29226804	0.02689519645968133	Hoxa9_Hoxb9	ENSMUST00000233441.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr7_-_44711771_44711859	0.02686005485469665	Hoxa9_Hoxb9	ENSMUST00000210101.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	ENSMUST00000209219.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm39_v1_chr8_-_112718888_112718934	0.026387671422648265	Hoxa9_Hoxb9	ENSMUST00000034427.12|Adat1|ENSMUSG00000031949.18|adenosine deaminase, tRNA-specific 1	ENSMUST00000139820.8|Adat1|ENSMUSG00000031949.18|adenosine deaminase, tRNA-specific 1
mm39_v1_chr2_+_29509704_29509922	0.026181219769344094	Hoxa9_Hoxb9	ENSMUST00000095087.11|Rapgef1|ENSMUSG00000039844.21|Rap guanine nucleotide exchange factor (GEF) 1	ENSMUST00000091146.12|Rapgef1|ENSMUSG00000039844.21|Rap guanine nucleotide exchange factor (GEF) 1	ENSMUST00000102872.11|Rapgef1|ENSMUSG00000039844.21|Rap guanine nucleotide exchange factor (GEF) 1	ENSMUST00000147755.10|Rapgef1|ENSMUSG00000039844.21|Rap guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr16_-_17348996_17349007	0.025953653385539087	Hoxa9_Hoxb9	ENSMUST00000100125.12|Thap7|ENSMUSG00000022760.18|THAP domain containing 7
mm39_v1_chr16_-_17348882_17348936	0.02549255901928502	Hoxa9_Hoxb9	ENSMUST00000231548.2|Thap7|ENSMUSG00000022760.18|THAP domain containing 7	ENSMUST00000232041.2|Thap7|ENSMUSG00000022760.18|THAP domain containing 7	ENSMUST00000231288.2|Thap7|ENSMUSG00000022760.18|THAP domain containing 7
mm39_v1_chr7_-_104677667_104677667	0.0253370566056812	Hoxa9_Hoxb9	ENSMUST00000215899.2|Olfr675|ENSMUSG00000096773.5|olfactory receptor 675	ENSMUST00000214318.3|Olfr675|ENSMUSG00000096773.5|olfactory receptor 675
mm39_v1_chr6_+_29694181_29694247	0.02516619538108008	Hoxa9_Hoxb9	ENSMUST00000046750.14|Tspan33|ENSMUSG00000001763.15|tetraspanin 33	ENSMUST00000115250.4|Tspan33|ENSMUSG00000001763.15|tetraspanin 33
mm39_v1_chr8_+_121215155_121215229	0.025089783526642023	Hoxa9_Hoxb9	ENSMUST00000034279.16|Gse1|ENSMUSG00000031822.21|genetic suppressor element 1, coiled-coil protein
mm39_v1_chr16_-_19241884_19241884	0.024910143607983794	Hoxa9_Hoxb9	ENSMUST00000206110.4|Olfr165|ENSMUSG00000050158.8|olfactory receptor 165
mm39_v1_chr11_-_99134885_99134964	0.024873027356521714	Hoxa9_Hoxb9	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr2_+_89821818_89821818	0.024800398914933366	Hoxa9_Hoxb9	ENSMUST00000216953.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261
mm39_v1_chr2_+_89821565_89821582	0.02439452653572362	Hoxa9_Hoxb9	ENSMUST00000111509.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261	ENSMUST00000213909.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261
mm39_v1_chr7_-_12829100_12829100	0.023544223464497988	Hoxa9_Hoxb9	ENSMUST00000209822.3|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85	ENSMUST00000235753.2|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85
mm39_v1_chr7_-_29643172_29643181	0.022359937086740313	Hoxa9_Hoxb9	ENSMUST00000108212.8|Zfp74|ENSMUSG00000059975.16|zinc finger protein 74
mm39_v1_chr7_+_29931309_29931457	0.021765759008098712	Hoxa9_Hoxb9	ENSMUST00000019882.16|Polr2i|ENSMUSG00000019738.16|polymerase (RNA) II (DNA directed) polypeptide I	ENSMUST00000149654.8|Polr2i|ENSMUSG00000019738.16|polymerase (RNA) II (DNA directed) polypeptide I
mm39_v1_chr18_+_20509771_20509797	0.020593643605776254	Hoxa9_Hoxb9	ENSMUST00000076737.7|Dsg1b|ENSMUSG00000061928.7|desmoglein 1 beta
mm39_v1_chr2_+_87436556_87436600	0.020001138542595567	Hoxa9_Hoxb9	ENSMUST00000213103.3|Olfr1130|ENSMUSG00000059205.6|olfactory receptor 1130	ENSMUST00000216580.2|Olfr1130|ENSMUSG00000059205.6|olfactory receptor 1130
mm39_v1_chr19_+_13628455_13628455	0.019638832671548742	Hoxa9_Hoxb9	ENSMUST00000213900.2|Olfr1490|ENSMUSG00000061387.4|olfactory receptor 1490
mm39_v1_chr4_+_132857816_132857901	0.018982238532443917	Hoxa9_Hoxb9	ENSMUST00000084241.12|Wasf2|ENSMUSG00000028868.14|WASP family, member 2	ENSMUST00000138831.2|Wasf2|ENSMUSG00000028868.14|WASP family, member 2
mm39_v1_chr9_-_63929308_63929357	0.01857908240695756	Hoxa9_Hoxb9	ENSMUST00000179458.2|Smad6|ENSMUSG00000036867.8|SMAD family member 6	ENSMUST00000041029.6|Smad6|ENSMUSG00000036867.8|SMAD family member 6
mm39_v1_chr4_+_145311759_145311791	0.018261145431539838	Hoxa9_Hoxb9	ENSMUST00000119718.8|Zfp268|ENSMUSG00000078502.11|zinc finger protein 268
mm39_v1_chr6_+_134958681_134958681	0.01793272335888751	Hoxa9_Hoxb9	ENSMUST00000167323.3|Apold1|ENSMUSG00000090698.3|apolipoprotein L domain containing 1
mm39_v1_chr6_-_52190299_52190323	0.01698185188932058	Hoxa9_Hoxb9	ENSMUST00000128102.4|Gm28308|ENSMUSG00000101298.2|predicted gene 28308
mm39_v1_chr15_+_81820954_81821038	0.016853505216904967	Hoxa9_Hoxb9	ENSMUST00000038757.8|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding	ENSMUST00000230633.2|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding
mm39_v1_chr9_+_64142483_64142483	0.016571376685858757	Hoxa9_Hoxb9	ENSMUST00000039011.4|Uchl4|ENSMUSG00000035337.4|ubiquitin carboxyl-terminal esterase L4
mm39_v1_chr6_+_70675416_70675434	0.016027645206069953	Hoxa9_Hoxb9	ENSMUST00000103403.3|Igkv3-2|ENSMUSG00000095351.3|immunoglobulin kappa variable 3-2
mm39_v1_chr10_+_129306867_129306867	0.015565800696250347	Hoxa9_Hoxb9	ENSMUST00000213222.2|Olfr788|ENSMUSG00000049217.5|olfactory receptor 788
mm39_v1_chr14_+_20724366_20724376	0.015526755734488472	Hoxa9_Hoxb9	ENSMUST00000048657.10|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr5_-_32903687_32903755	0.015145840362875529	Hoxa9_Hoxb9	ENSMUST00000135248.2|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chrY_-_9132561_9132561	0.014894594189394891	Hoxa9_Hoxb9	ENSMUST00000171947.3|Gm21292|ENSMUSG00000091077.4|predicted gene, 21292
mm39_v1_chr2_-_27354006_27354128	0.014584973930612845	Hoxa9_Hoxb9	ENSMUST00000164296.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr2_+_111355548_111355548	0.01438679256574153	Hoxa9_Hoxb9	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr15_-_41733099_41733123	0.013454667118965433	Hoxa9_Hoxb9	ENSMUST00000054742.7|Abra|ENSMUSG00000042895.7|actin-binding Rho activating protein
mm39_v1_chr7_-_104983311_104983311	0.013340413590884361	Hoxa9_Hoxb9	ENSMUST00000211006.3|Olfr690|ENSMUSG00000050266.7|olfactory receptor 690	ENSMUST00000216230.2|Olfr690|ENSMUSG00000050266.7|olfactory receptor 690
mm39_v1_chr9_-_107648144_107648206	0.01284014940989185	Hoxa9_Hoxb9	ENSMUST00000183248.3|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182022.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000035199.13|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182659.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5
mm39_v1_chr2_-_57942844_57942881	0.012565344906767813	Hoxa9_Hoxb9	ENSMUST00000090940.6|Ermn|ENSMUSG00000026830.10|ermin, ERM-like protein
mm39_v1_chr12_+_71184614_71184614	0.012244686180886165	Hoxa9_Hoxb9	ENSMUST00000045907.16|2700049A03Rik|ENSMUSG00000034601.18|RIKEN cDNA 2700049A03 gene
mm39_v1_chr9_+_121196034_121196108	0.012224626869729052	Hoxa9_Hoxb9	ENSMUST00000210636.2|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1	ENSMUST00000045903.8|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1
mm39_v1_chr11_-_78277384_78277433	0.010360516903976066	Hoxa9_Hoxb9	ENSMUST00000108294.2|Foxn1|ENSMUSG00000002057.5|forkhead box N1
mm39_v1_chr17_+_36172210_36172232	0.010095579134034569	Hoxa9_Hoxb9	ENSMUST00000074259.15|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)	ENSMUST00000174873.2|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)
mm39_v1_chr2_+_36674288_36674368	0.009326717521987814	Hoxa9_Hoxb9	ENSMUST00000213498.2|Olfr348|ENSMUSG00000049315.5|olfactory receptor 348	ENSMUST00000214909.3|Olfr348|ENSMUSG00000049315.5|olfactory receptor 348	ENSMUST00000215199.2|Olfr348|ENSMUSG00000049315.5|olfactory receptor 348
mm39_v1_chr2_+_147206910_147206931	0.008940460494195234	Hoxa9_Hoxb9	ENSMUST00000109968.3|Pax1|ENSMUSG00000037034.17|paired box 1
mm39_v1_chr4_-_58787716_58787716	0.008932536255047216	Hoxa9_Hoxb9	ENSMUST00000216719.2|Olfr267|ENSMUSG00000043385.5|olfactory receptor 267
mm39_v1_chr6_-_122317484_122317520	0.008476473032509625	Hoxa9_Hoxb9	ENSMUST00000112600.9|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr2_-_80277969_80277969	0.008466522998953965	Hoxa9_Hoxb9	ENSMUST00000028389.4|Frzb|ENSMUSG00000027004.4|frizzled-related protein
mm39_v1_chr7_-_85974838_85974838	0.008175140509449643	Hoxa9_Hoxb9	ENSMUST00000214977.2|Olfr308|ENSMUSG00000054498.7|olfactory receptor 308
mm39_v1_chr7_-_37970734_37970847	0.007601327646261151	Hoxa9_Hoxb9	ENSMUST00000032585.8|Pop4|ENSMUSG00000030423.8|processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
mm39_v1_chr6_+_70640233_70640259	0.0075618927798754895	Hoxa9_Hoxb9	ENSMUST00000103400.3|Igkv3-5|ENSMUSG00000095335.3|immunoglobulin kappa chain variable 3-5
mm39_v1_chr2_+_85804239_85804239	0.007522204115024748	Hoxa9_Hoxb9	ENSMUST00000217244.2|Olfr1029|ENSMUSG00000059873.5|olfactory receptor 1029
mm39_v1_chr6_-_122317457_122317471	0.007491214806005772	Hoxa9_Hoxb9	ENSMUST00000160843.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr6_+_70648743_70648772	0.007307022621208648	Hoxa9_Hoxb9	ENSMUST00000103401.3|Igkv3-4|ENSMUSG00000096715.3|immunoglobulin kappa variable 3-4
mm39_v1_chr17_+_36172235_36172378	0.0069977996606021865	Hoxa9_Hoxb9	ENSMUST00000172931.2|Nrm|ENSMUSG00000059791.15|nurim (nuclear envelope membrane protein)
mm39_v1_chr9_+_35819708_35819738	0.006785938325599825	Hoxa9_Hoxb9	ENSMUST00000176049.2|Pate13|ENSMUSG00000078934.5|prostate and testis expressed 13	ENSMUST00000176153.2|Pate13|ENSMUSG00000078934.5|prostate and testis expressed 13
mm39_v1_chr11_+_115294560_115294603	0.006397658163837352	Hoxa9_Hoxb9	ENSMUST00000153983.8|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000106539.10|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58	ENSMUST00000103036.5|Mrpl58|ENSMUSG00000018858.16|mitochondrial ribosomal protein L58
mm39_v1_chr11_+_49346170_49346170	0.005109041740588121	Hoxa9_Hoxb9	ENSMUST00000214541.2|Olfr1387|ENSMUSG00000063386.3|olfactory receptor 1387
mm39_v1_chr3_+_108498595_108498727	0.005104204026339606	Hoxa9_Hoxb9	ENSMUST00000051145.15|Wdr47|ENSMUSG00000040389.16|WD repeat domain 47
mm39_v1_chr8_-_25164767_25164774	0.004711287351374588	Hoxa9_Hoxb9	ENSMUST00000033957.12|Adam18|ENSMUSG00000031552.14|a disintegrin and metallopeptidase domain 18
mm39_v1_chr5_+_128677863_128677912	0.004494680130085295	Hoxa9_Hoxb9	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr2_+_84818538_84818559	0.00448616434954921	Hoxa9_Hoxb9	ENSMUST00000028466.12|Prg3|ENSMUSG00000027072.14|proteoglycan 3
mm39_v1_chr9_+_45014092_45014182	0.004392927937350993	Hoxa9_Hoxb9	ENSMUST00000217074.2|Jaml|ENSMUSG00000048534.8|junction adhesion molecule like
mm39_v1_chr11_-_58446443_58446462	0.0042973284434054924	Hoxa9_Hoxb9	ENSMUST00000216725.2|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328	ENSMUST00000215717.2|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328	ENSMUST00000108824.3|Olfr328|ENSMUSG00000057654.7|olfactory receptor 328
mm39_v1_chr7_-_103191924_103191924	0.0042917296403299264	Hoxa9_Hoxb9	ENSMUST00000214269.3|Olfr612|ENSMUSG00000094119.4|olfactory receptor 612
mm39_v1_chr4_+_44012638_44012694	0.004259546969371995	Hoxa9_Hoxb9	ENSMUST00000107847.10|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)	ENSMUST00000170241.8|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)	ENSMUST00000107849.10|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)	ENSMUST00000107851.10|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)	ENSMUST00000107845.4|Clta|ENSMUSG00000028478.19|clathrin, light polypeptide (Lca)
mm39_v1_chr7_+_55699883_55700001	0.004163855860783205	Hoxa9_Hoxb9	ENSMUST00000205653.2|Herc2|ENSMUSG00000030451.17|HECT and RLD domain containing E3 ubiquitin protein ligase 2	ENSMUST00000076226.13|Herc2|ENSMUSG00000030451.17|HECT and RLD domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr6_-_87958611_87958626	0.0041274894605174564	Hoxa9_Hoxb9	ENSMUST00000056403.7|H1f10|ENSMUSG00000044927.7|H1.10 linker histone
mm39_v1_chr7_+_142086749_142086787	0.003411537005342574	Hoxa9_Hoxb9	ENSMUST00000038675.7|Mrpl23|ENSMUSG00000037772.14|mitochondrial ribosomal protein L23
mm39_v1_chr2_+_86655007_86655007	0.0032578427404690784	Hoxa9_Hoxb9	ENSMUST00000217509.2|Olfr1094|ENSMUSG00000044213.5|olfactory receptor 1094
mm39_v1_chr12_+_105125949_105125961	0.0031828353236774353	Hoxa9_Hoxb9	ENSMUST00000085043.7|Tcl1b1|ENSMUSG00000066359.7|T cell leukemia/lymphoma 1B, 1	ENSMUST00000222342.2|Tcl1b1|ENSMUSG00000066359.7|T cell leukemia/lymphoma 1B, 1
mm39_v1_chr9_+_92191415_92191439	0.002989044550117725	Hoxa9_Hoxb9	ENSMUST00000150594.8|1700057G04Rik|ENSMUSG00000074139.9|RIKEN cDNA 1700057G04 gene	ENSMUST00000098477.8|1700057G04Rik|ENSMUSG00000074139.9|RIKEN cDNA 1700057G04 gene
mm39_v1_chr5_-_26310360_26310360	0.0024192897224799208	Hoxa9_Hoxb9	ENSMUST00000063524.3|5031410I06Rik|ENSMUSG00000051940.3|RIKEN cDNA 5031410I06 gene
mm39_v1_chr8_-_4155758_4155835	0.002342045283761137	Hoxa9_Hoxb9	ENSMUST00000138439.2|Cd209f|ENSMUSG00000051906.16|CD209f antigen	ENSMUST00000145007.8|Cd209f|ENSMUSG00000051906.16|CD209f antigen
mm39_v1_chr1_+_88139678_88139707	0.0022914299289317186	Hoxa9_Hoxb9	ENSMUST00000073049.7|Ugt1a1|ENSMUSG00000089960.2|UDP glucuronosyltransferase 1 family, polypeptide A1
mm39_v1_chr3_+_82933383_82933522	0.00226604913162313	Hoxa9_Hoxb9	ENSMUST00000029630.15|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain	ENSMUST00000166581.4|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain
mm39_v1_chr19_-_45800730_45800746	0.0022164260582224447	Hoxa9_Hoxb9	ENSMUST00000086993.11|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2
mm39_v1_chr4_+_147056433_147056433	0.0019197928566191036	Hoxa9_Hoxb9	ENSMUST00000146688.3|Zfp989|ENSMUSG00000086147.3|zinc finger protein 989
mm39_v1_chr8_-_96302083_96302083	0.0012940431878286165	Hoxa9_Hoxb9	ENSMUST00000213096.2|Prss54|ENSMUSG00000048400.14|protease, serine 54	ENSMUST00000052690.13|Prss54|ENSMUSG00000048400.14|protease, serine 54
mm39_v1_chr3_+_137923521_137923538	0.0011855941175525988	Hoxa9_Hoxb9	ENSMUST00000090171.7|Adh7|ENSMUSG00000055301.9|alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
mm39_v1_chr16_+_38405718_38405870	0.0010720688898884123	Hoxa9_Hoxb9	ENSMUST00000165631.2|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a
mm39_v1_chr7_-_103661957_103661957	0.0010458905363940317	Hoxa9_Hoxb9	ENSMUST00000106862.3|Olfr639|ENSMUSG00000066263.11|olfactory receptor 639
mm39_v1_chr19_-_13075176_13075255	0.001037957493983613	Hoxa9_Hoxb9	ENSMUST00000208913.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457	ENSMUST00000215229.2|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chrX_+_35664933_35664933	0.0009417292574299658	Hoxa9_Hoxb9	ENSMUST00000115253.3|Gm6268|ENSMUSG00000079642.3|predicted gene 6268
mm39_v1_chr14_+_56279498_56279498	0.0009153752988994571	Hoxa9_Hoxb9	ENSMUST00000015576.6|Mcpt2|ENSMUSG00000022226.7|mast cell protease 2
mm39_v1_chr8_+_4184652_4184725	0.0008975132092361296	Hoxa9_Hoxb9	ENSMUST00000130372.3|Cd209g|ENSMUSG00000079168.5|CD209g antigen
mm39_v1_chr10_+_25308466_25308518	0.000629378955626738	Hoxa9_Hoxb9	ENSMUST00000219224.2|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2	ENSMUST00000219166.2|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2
mm39_v1_chr6_+_146944253_146944298	0.0005763351251073656	Hoxa9_Hoxb9	ENSMUST00000036111.10|Mrps35|ENSMUSG00000040112.10|mitochondrial ribosomal protein S35
mm39_v1_chr3_+_98187743_98187760	0.000565146303491511	Hoxa9_Hoxb9	ENSMUST00000120541.8|Hmgcs2|ENSMUSG00000027875.13|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	ENSMUST00000090746.3|Hmgcs2|ENSMUSG00000027875.13|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm39_v1_chr16_-_22630327_22630327	0.0005584915543518797	Hoxa9_Hoxb9	ENSMUST00000040592.6|Crygs|ENSMUSG00000033501.6|crystallin, gamma S
mm39_v1_chr3_+_118355778_118355805	0.0005133954932526879	Hoxa9_Hoxb9	ENSMUST00000039177.12|Dpyd|ENSMUSG00000033308.17|dihydropyrimidine dehydrogenase
mm39_v1_chr5_-_139799953_139800038	0.0005009166508612739	Hoxa9_Hoxb9	ENSMUST00000044002.10|Tmem184a|ENSMUSG00000036687.14|transmembrane protein 184a
mm39_v1_chr1_-_179572765_179572836	0.00046593255813347315	Hoxa9_Hoxb9	ENSMUST00000211943.3|Kif28|ENSMUSG00000087236.4|kinesin family member 28	ENSMUST00000131716.4|Kif28|ENSMUSG00000087236.4|kinesin family member 28	ENSMUST00000221136.2|Kif28|ENSMUSG00000087236.4|kinesin family member 28
mm39_v1_chr6_-_70364222_70364236	0.0004431264802018005	Hoxa9_Hoxb9	ENSMUST00000103392.3|Igkv8-16|ENSMUSG00000076591.4|immunoglobulin kappa variable 8-16	ENSMUST00000195945.2|Igkv8-16|ENSMUSG00000076591.4|immunoglobulin kappa variable 8-16
mm39_v1_chr7_-_28329924_28329993	0.00032713540995939417	Hoxa9_Hoxb9	ENSMUST00000159095.2|Acp7|ENSMUSG00000037469.12|acid phosphatase 7, tartrate resistant	ENSMUST00000159418.8|Acp7|ENSMUSG00000037469.12|acid phosphatase 7, tartrate resistant	ENSMUST00000159560.3|Acp7|ENSMUSG00000037469.12|acid phosphatase 7, tartrate resistant
mm39_v1_chr9_-_38934656_38934673	0.00021014945014836105	Hoxa9_Hoxb9	ENSMUST00000215383.2|Olfr146|ENSMUSG00000058820.4|olfactory receptor 146	ENSMUST00000214410.2|Olfr146|ENSMUSG00000058820.4|olfactory receptor 146	ENSMUST00000214369.2|Olfr146|ENSMUSG00000058820.4|olfactory receptor 146
mm39_v1_chr5_-_26193648_26193648	0.00018311682842334824	Hoxa9_Hoxb9	ENSMUST00000191203.7|Gm21698|ENSMUSG00000096045.8|predicted gene, 21698
mm39_v1_chr5_-_26227914_26227914	0.00014089609193128753	Hoxa9_Hoxb9	ENSMUST00000072286.7|Gm5862|ENSMUSG00000067700.6|predicted gene 5862
mm39_v1_chr18_-_44292952_44293020	5.6560712555814e-05	Hoxa9_Hoxb9	ENSMUST00000181652.9|Gm10267|ENSMUSG00000069385.11|predicted gene 10267
mm39_v1_chr18_+_13139992_13140094	5.20926661530723e-05	Hoxa9_Hoxb9	ENSMUST00000041676.3|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234084.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234565.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4
mm39_v1_chr6_+_70680515_70680562	3.6898968876297264e-05	Hoxa9_Hoxb9	ENSMUST00000103404.2|Igkv3-1|ENSMUSG00000095682.2|immunoglobulin kappa variable 3-1
mm39_v1_chr8_-_34333573_34333699	3.288264796608902e-05	Hoxa9_Hoxb9	ENSMUST00000183062.2|Rbpms|ENSMUSG00000031586.18|RNA binding protein gene with multiple splicing
