mm39_v1_chr10_+_99099084_99099106	0.3436781482016014	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020118.5|Dusp6|ENSMUSG00000019960.9|dual specificity phosphatase 6	ENSMUST00000220291.2|Dusp6|ENSMUSG00000019960.9|dual specificity phosphatase 6
mm39_v1_chr3_+_159545309_159545390	0.2118299411147344	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068952.10|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator	ENSMUST00000198878.2|Wls|ENSMUSG00000028173.11|wntless WNT ligand secretion mediator
mm39_v1_chr19_-_24178000_24178016	0.20791001520682648	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000233658.3|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr5_-_77262968_77263003	0.2034142755576584	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081964.7|Hopx|ENSMUSG00000059325.15|HOP homeobox
mm39_v1_chr14_+_26722319_26722463	0.17510858195160633	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035433.10|Hesx1|ENSMUSG00000040726.11|homeobox gene expressed in ES cells
mm39_v1_chr5_+_115373895_115373895	0.15192906723504593	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000081497.13|Pop5|ENSMUSG00000060152.15|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm39_v1_chr18_-_43610829_43610868	0.1455732908284384	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr7_-_45480200_45480368	0.14350986486453732	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107723.9|Grwd1|ENSMUSG00000053801.19|glutamate-rich WD repeat containing 1	ENSMUST00000131384.3|Grwd1|ENSMUSG00000053801.19|glutamate-rich WD repeat containing 1
mm39_v1_chr14_+_79753055_79753148	0.14193353478676393	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110835.3|Elf1|ENSMUSG00000036461.17|E74-like factor 1	ENSMUST00000227192.2|Elf1|ENSMUSG00000036461.17|E74-like factor 1
mm39_v1_chr10_+_127257077_127257104	0.1169787484664111	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000168780.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr9_+_118307412_118307519	0.11557442174161257	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035020.15|Eomes|ENSMUSG00000032446.15|eomesodermin
mm39_v1_chr6_-_129449739_129449755	0.09979731840716906	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112076.9|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a	ENSMUST00000184581.3|Clec7a|ENSMUSG00000079293.12|C-type lectin domain family 7, member a
mm39_v1_chr15_+_65682066_65682083	0.09345375090548323	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000211878.2|Efr3a|ENSMUSG00000015002.19|EFR3 homolog A
mm39_v1_chr5_+_35156389_35156430	0.0911514737168014	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114281.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12	ENSMUST00000114280.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr3_+_68479578_68479723	0.08890476339814017	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170788.9|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr15_+_21111428_21111538	0.08826762219395404	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr18_-_66155651_66155671	0.08618487146604642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143990.2|Lman1|ENSMUSG00000041891.17|lectin, mannose-binding, 1
mm39_v1_chr5_-_23821523_23821596	0.08442762749859783	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr15_+_25774070_25774130	0.08190263601703436	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125667.3|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr5_-_137530214_137530251	0.07844745086360828	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140139.2|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr11_+_60428788_60428810	0.07525938364173683	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044250.4|Alkbh5|ENSMUSG00000042650.4|alkB homolog 5, RNA demethylase
mm39_v1_chr19_+_26727111_26727277	0.07290319422066083	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175842.4|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chrM_+_7006_7021	0.07220022104088566	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr11_-_87249837_87249901	0.07119224633900299	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr2_+_132689640_132689661	0.06907233410177017	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000124836.8|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1	ENSMUST00000154160.2|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1
mm39_v1_chr9_+_32027335_32027432	0.06854987547925316	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr7_-_4909515_4909515	0.06332137333356264	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000210663.2|Gm36210|ENSMUSG00000110221.2|predicted gene, 36210
mm39_v1_chr12_-_25147139_25147282	0.06286349712587874	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000221761.2|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2
mm39_v1_chr8_+_107757847_107757862	0.06084108422550374	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034388.10|Vps4a|ENSMUSG00000031913.10|vacuolar protein sorting 4A
mm39_v1_chr13_-_43634695_43634823	0.059911422618815845	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chrM_+_8603_8615	0.059825613301246854	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr11_+_23256883_23256908	0.05975007342615211	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180046.8|Usp34|ENSMUSG00000056342.17|ubiquitin specific peptidase 34
mm39_v1_chrX_+_158086253_158086277	0.05727146849522636	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr7_+_126550009_126550138	0.05607224260771789	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106332.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr14_-_86986541_86986569	0.05513065481392033	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000226254.2|Diaph3|ENSMUSG00000022021.15|diaphanous related formin 3
mm39_v1_chr5_-_137529465_137529559	0.054151176009931766	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000150063.9|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr12_+_70499869_70499881	0.05407068893593699	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021471.13|Tmx1|ENSMUSG00000021072.13|thioredoxin-related transmembrane protein 1
mm39_v1_chr17_+_46471950_46471997	0.05156674353502498	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024748.14|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2	ENSMUST00000172170.8|Gtpbp2|ENSMUSG00000023952.14|GTP binding protein 2
mm39_v1_chr5_-_65855511_65855596	0.050880059722321555	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000201948.4|Pds5a|ENSMUSG00000029202.13|PDS5 cohesin associated factor A
mm39_v1_chr8_-_85389470_85389488	0.05074674923013526	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000060427.6|Ier2|ENSMUSG00000053560.6|immediate early response 2
mm39_v1_chr18_+_24737009_24737051	0.04865548101840155	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234266.2|Elp2|ENSMUSG00000024271.9|elongator acetyltransferase complex subunit 2	ENSMUST00000025120.8|Elp2|ENSMUSG00000024271.9|elongator acetyltransferase complex subunit 2
mm39_v1_chr11_+_23256909_23256937	0.04760097746245311	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137823.8|Usp34|ENSMUSG00000056342.17|ubiquitin specific peptidase 34
mm39_v1_chr3_+_151143524_151143551	0.04723085324114941	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046977.12|Adgrl4|ENSMUSG00000039167.13|adhesion G protein-coupled receptor L4
mm39_v1_chr6_+_29859372_29859380	0.04682411587658642	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115238.10|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr5_+_35156454_35156528	0.046202217753899794	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114283.8|Rgs12|ENSMUSG00000029101.17|regulator of G-protein signaling 12
mm39_v1_chr5_-_138185438_138185499	0.04599293007160573	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110937.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000139276.2|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000048698.14|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6	ENSMUST00000123415.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr2_+_170353338_170353480	0.04592649265764525	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136839.2|Pfdn4|ENSMUSG00000052033.14|prefoldin 4	ENSMUST00000109148.8|Pfdn4|ENSMUSG00000052033.14|prefoldin 4	ENSMUST00000170167.8|Pfdn4|ENSMUSG00000052033.14|prefoldin 4
mm39_v1_chr10_-_107321938_107321995	0.045516883456539745	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr9_-_103099262_103099357	0.04388286246910722	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000170904.2|Trf|ENSMUSG00000032554.16|transferrin
mm39_v1_chr16_-_95387444_95387454	0.04338676092660783	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000233269.2|Erg|ENSMUSG00000040732.21|ETS transcription factor
mm39_v1_chr18_+_84869456_84869473	0.042907722716101555	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160180.9|Cyb5a|ENSMUSG00000024646.15|cytochrome b5 type A (microsomal)
mm39_v1_chr11_-_99265721_99265735	0.041493548360355514	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr8_-_85573489_85573563	0.04094612294257941	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000003912.7|Calr|ENSMUSG00000003814.9|calreticulin
mm39_v1_chr17_+_45817750_45817784	0.04076032536809343	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024733.9|Aars2|ENSMUSG00000023938.9|alanyl-tRNA synthetase 2, mitochondrial
mm39_v1_chr18_+_23548455_23548511	0.04055072521371066	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000115832.4|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr3_+_96537484_96537516	0.040105758808146784	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000200647.2|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr10_+_82695013_82695051	0.03963609849109629	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020484.9|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1	ENSMUST00000219962.3|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1
mm39_v1_chr11_-_107228382_107228463	0.03934801023601755	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040380.13|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr15_-_8740218_8740248	0.03925982694223586	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005493.14|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr11_+_102175985_102176089	0.03924459766303006	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156326.2|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr1_-_52230062_52230090	0.03873792314498014	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156887.8|Gls|ENSMUSG00000026103.15|glutaminase	ENSMUST00000129107.2|Gls|ENSMUSG00000026103.15|glutaminase
mm39_v1_chr16_-_92196954_92196971	0.036886397065746965	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000023672.10|Rcan1|ENSMUSG00000022951.17|regulator of calcineurin 1
mm39_v1_chr9_-_71070506_71070572	0.036505118228651524	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000074465.9|Aqp9|ENSMUSG00000032204.14|aquaporin 9
mm39_v1_chr2_+_20742115_20742152	0.0359943214665681	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr13_-_103042554_103042619	0.03584509770273459	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171791.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr3_-_49711765_49711772	0.03540624354589383	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035931.13|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr1_-_171854818_171854880	0.03496961956003423	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138714.2|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000027837.13|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2	ENSMUST00000111264.8|Vangl2|ENSMUSG00000026556.16|VANGL planar cell polarity 2
mm39_v1_chr7_+_101545547_101545638	0.03380223320133767	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr12_+_55286111_55286111	0.033790500048802304	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164243.2|Srp54c|ENSMUSG00000079108.7|signal recognition particle 54C
mm39_v1_chr3_-_49711706_49711758	0.03361030996838704	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000191794.2|Pcdh18|ENSMUSG00000037892.14|protocadherin 18
mm39_v1_chr10_+_127919142_127919183	0.033120065292246405	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026459.6|Atp5b|ENSMUSG00000025393.13|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm39_v1_chr2_-_5838489_5838489	0.03271770458905812	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128467.4|Cdc123|ENSMUSG00000039128.14|cell division cycle 123
mm39_v1_chr7_-_44635740_44635780	0.03260366054753352	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000209056.3|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000209124.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000208312.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207659.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000045325.14|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr17_+_27775613_27775627	0.031889690827848594	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000231780.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232253.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232552.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000117600.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr1_-_4430481_4430537	0.03145425147269175	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027032.6|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr2_+_71219561_71219622	0.03129699198933402	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000028408.3|Hat1|ENSMUSG00000027018.12|histone aminotransferase 1
mm39_v1_chr7_+_101546059_101546168	0.030044741355606086	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr18_+_23548534_23548567	0.028864372861115626	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000221880.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000220904.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000047954.15|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr1_+_11063678_11063702	0.028196659183148783	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chr12_+_38830283_38830348	0.027180613714494928	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162563.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000161164.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160996.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chrX_+_41241049_41241072	0.027115327691964255	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128799.3|Stag2|ENSMUSG00000025862.15|stromal antigen 2
mm39_v1_chr18_-_57108405_57108452	0.02708183448104511	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139243.9|C330018D20Rik|ENSMUSG00000024592.16|RIKEN cDNA C330018D20 gene	ENSMUST00000025488.15|C330018D20Rik|ENSMUSG00000024592.16|RIKEN cDNA C330018D20 gene
mm39_v1_chr16_+_35803794_35803952	0.026576590933326826	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173555.8|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr17_+_38104420_38104420	0.026503856895173327	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000216051.3|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr2_-_69542805_69542950	0.026490659540181948	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102706.4|Fastkd1|ENSMUSG00000027086.17|FAST kinase domains 1	ENSMUST00000073152.13|Fastkd1|ENSMUSG00000027086.17|FAST kinase domains 1
mm39_v1_chr18_-_38102799_38102836	0.026468977375312817	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166148.8|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1	ENSMUST00000163131.8|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1	ENSMUST00000043437.14|Fchsd1|ENSMUSG00000038524.14|FCH and double SH3 domains 1
mm39_v1_chr17_+_27775637_27775669	0.026198184028070226	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117254.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231243.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231358.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000118570.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231796.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr5_-_123126550_123126599	0.02614547571771207	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086200.11|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B	ENSMUST00000156474.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr11_-_97944239_97944293	0.025944949504329996	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000017544.9|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr6_-_52203146_52203176	0.02583066824119027	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr14_-_52341472_52341485	0.025549092499332834	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111610.12|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000164655.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr12_-_91815855_91815931	0.02546621739677182	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167466.2|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000021347.12|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000178462.8|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)
mm39_v1_chr4_-_14621805_14621819	0.025375244017998677	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042221.14|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr2_+_89642395_89642395	0.02537103163954638	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214508.2|Olfr1255|ENSMUSG00000045148.6|olfactory receptor 1255
mm39_v1_chr5_+_138185747_138185829	0.025150859370851385	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chr5_-_138185686_138185724	0.02496965446218204	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110936.8|Taf6|ENSMUSG00000036980.14|TATA-box binding protein associated factor 6
mm39_v1_chr3_-_88317601_88317656	0.02403415310275505	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000193338.6|Pmf1|ENSMUSG00000028066.16|polyamine-modulated factor 1	ENSMUST00000056370.13|Pmf1|ENSMUSG00000028066.16|polyamine-modulated factor 1
mm39_v1_chr18_+_56565188_56565236	0.023844254635788847	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070166.6|Gramd3|ENSMUSG00000001700.11|GRAM domain containing 3
mm39_v1_chr9_-_40257586_40257634	0.02342112780167846	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121357.8|Gramd1b|ENSMUSG00000040111.18|GRAM domain containing 1B
mm39_v1_chr12_+_72488625_72488640	0.022729942733438726	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr17_+_38104635_38104635	0.022483439245289217	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214770.3|Olfr123|ENSMUSG00000045202.7|olfactory receptor 123
mm39_v1_chr11_-_99494134_99494134	0.0219311451393736	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072306.4|Gm11938|ENSMUSG00000057674.4|predicted gene 11938
mm39_v1_chr17_+_35150229_35150360	0.02192030932905294	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000007253.6|Neu1|ENSMUSG00000007038.6|neuraminidase 1
mm39_v1_chr10_+_18345706_18345729	0.021580615455676685	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000162891.8|Nhsl1|ENSMUSG00000039835.17|NHS-like 1	ENSMUST00000100054.4|Nhsl1|ENSMUSG00000039835.17|NHS-like 1
mm39_v1_chr3_+_96537235_96537273	0.02125390126096108	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000048915.11|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000196456.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000198027.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr11_-_99228756_99228793	0.020817436583648485	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100482.3|Krt26|ENSMUSG00000075570.3|keratin 26
mm39_v1_chr6_-_99243455_99243501	0.02010269162435541	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr18_-_81029986_81029986	0.020087788597313767	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057950.9|Sall3|ENSMUSG00000024565.11|spalt like transcription factor 3
mm39_v1_chr2_-_77533596_77533616	0.019938595877367543	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171063.8|Zfp385b|ENSMUSG00000027016.18|zinc finger protein 385B
mm39_v1_chr19_+_45433899_45433982	0.019873418685516325	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000224478.2|Btrc|ENSMUSG00000025217.16|beta-transducin repeat containing protein
mm39_v1_chr12_+_38830812_38830847	0.019805661511331635	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160856.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr5_-_86437119_86437167	0.01900558012389386	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000196462.2|Tmprss11c|ENSMUSG00000061184.9|transmembrane protease, serine 11c	ENSMUST00000059424.10|Tmprss11c|ENSMUSG00000061184.9|transmembrane protease, serine 11c
mm39_v1_chr12_-_21467437_21467638	0.018790244467370733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr9_-_96513529_96513670	0.018783374257728375	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr2_+_85612365_85612365	0.01844901539899212	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215945.2|Olfr1015|ENSMUSG00000033850.6|olfactory receptor 1015
mm39_v1_chr5_-_123127346_123127401	0.018161362517249546	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr9_-_79884920_79884944	0.017485733374235996	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239133.2|Filip1|ENSMUSG00000034898.18|filamin A interacting protein 1
mm39_v1_chr2_-_168608949_168608965	0.017451667239169067	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075044.10|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr9_-_79885063_79885091	0.01705380907633833	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093811.11|Filip1|ENSMUSG00000034898.18|filamin A interacting protein 1
mm39_v1_chr10_-_8632519_8632533	0.01690943506953292	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000212869.2|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr14_-_36820304_36820321	0.016865675611213746	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022337.11|Cdhr1|ENSMUSG00000021803.11|cadherin-related family member 1
mm39_v1_chr2_+_69050315_69050348	0.016832204659835967	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000005364.12|G6pc2|ENSMUSG00000005232.12|glucose-6-phosphatase, catalytic, 2	ENSMUST00000112317.3|G6pc2|ENSMUSG00000005232.12|glucose-6-phosphatase, catalytic, 2
mm39_v1_chr2_+_127750978_127750978	0.0167964929681057	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110344.2|Acoxl|ENSMUSG00000027380.11|acyl-Coenzyme A oxidase-like
mm39_v1_chr15_-_34356567_34356567	0.016646625191698995	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179647.2|9430069I07Rik|ENSMUSG00000094447.3|RIKEN cDNA 9430069I07 gene
mm39_v1_chr17_+_34258411_34258455	0.016551705047423114	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000087497.11|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000131134.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000235819.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114255.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000114252.9|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2	ENSMUST00000237989.2|Col11a2|ENSMUSG00000024330.18|collagen, type XI, alpha 2
mm39_v1_chr7_+_126549859_126549901	0.01637908915672312	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106333.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr19_-_55229668_55229668	0.016333107216289663	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000069183.8|Gucy2g|ENSMUSG00000055523.8|guanylate cyclase 2g
mm39_v1_chr6_+_15196950_15197041	0.01616575890777431	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000140557.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000131414.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2	ENSMUST00000115469.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr2_+_27055245_27055245	0.016134045378740455	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000000910.7|Dbh|ENSMUSG00000000889.9|dopamine beta hydroxylase
mm39_v1_chr18_+_37898633_37898633	0.015969483614418745	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000044851.8|Pcdhga12|ENSMUSG00000102428.2|protocadherin gamma subfamily A, 12
mm39_v1_chr4_-_14621497_14621506	0.015713561353181197	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000149633.2|Slc26a7|ENSMUSG00000040569.14|solute carrier family 26, member 7
mm39_v1_chr7_+_30463175_30463224	0.015607034680493442	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165887.8|Dmkn|ENSMUSG00000060962.13|dermokine	ENSMUST00000085691.11|Dmkn|ENSMUSG00000060962.13|dermokine	ENSMUST00000054427.13|Dmkn|ENSMUSG00000060962.13|dermokine	ENSMUST00000085688.11|Dmkn|ENSMUSG00000060962.13|dermokine
mm39_v1_chr4_+_150938376_150938525	0.015338602806294845	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073600.9|Errfi1|ENSMUSG00000028967.11|ERBB receptor feedback inhibitor 1
mm39_v1_chr15_+_28203872_28203898	0.01529353429822269	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067048.8|Dnah5|ENSMUSG00000022262.9|dynein, axonemal, heavy chain 5
mm39_v1_chr3_+_67799510_67799565	0.015178697108237937	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000063263.5|Iqcj|ENSMUSG00000051777.7|IQ motif containing J	ENSMUST00000182006.4|Iqschfp|ENSMUSG00000102422.2|Iqcj and Schip1 fusion protein
mm39_v1_chr14_-_54651442_54651542	0.014945915235196654	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227334.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr10_-_129107354_129107354	0.014777190527538318	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000204573.3|Olfr777|ENSMUSG00000062914.4|olfactory receptor 777
mm39_v1_chr7_-_115797722_115797796	0.01468274790280009	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000181981.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr3_+_151143557_151143593	0.014522948156321467	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000196970.3|Adgrl4|ENSMUSG00000039167.13|adhesion G protein-coupled receptor L4
mm39_v1_chr8_+_10299288_10299367	0.014146648111048928	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214643.2|Myo16|ENSMUSG00000039057.12|myosin XVI
mm39_v1_chr7_-_44635813_44635992	0.014028312462764665	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000208829.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000207370.2|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1	ENSMUST00000107843.11|Prmt1|ENSMUSG00000109324.3|protein arginine N-methyltransferase 1
mm39_v1_chr16_+_35861554_35861605	0.013991200240634742	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chr10_+_82695055_82695093	0.013872252458139651	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000218694.2|Txnrd1|ENSMUSG00000020250.12|thioredoxin reductase 1
mm39_v1_chr7_+_107411470_107411470	0.013741191642182758	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000208563.3|Olfr467|ENSMUSG00000066242.4|olfactory receptor 467	ENSMUST00000214253.2|Olfr467|ENSMUSG00000066242.4|olfactory receptor 467
mm39_v1_chr13_-_103042294_103042318	0.01364673411353965	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167462.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr1_-_165762469_165762605	0.013482710172172866	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr11_-_100653754_100653762	0.01322932748880218	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107360.3|Hcrt|ENSMUSG00000045471.5|hypocretin	ENSMUST00000055083.4|Hcrt|ENSMUSG00000045471.5|hypocretin
mm39_v1_chr14_-_52341426_52341468	0.012869527025862141	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227536.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227195.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228815.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228198.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227458.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228232.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000227242.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000228748.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr2_-_87504008_87504008	0.012749521746956968	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000213835.2|Olfr1135|ENSMUSG00000075153.3|olfactory receptor 1135
mm39_v1_chr9_+_43222104_43222145	0.012712376815659869	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr14_-_110992533_110992584	0.012548324356341439	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078386.4|Slitrk6|ENSMUSG00000045871.6|SLIT and NTRK-like family, member 6
mm39_v1_chr19_+_26728339_26728367	0.012478708455543818	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000175953.3|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr3_+_108000425_108000454	0.012328439704962883	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000151326.8|Gnat2|ENSMUSG00000009108.16|guanine nucleotide binding protein, alpha transducing 2
mm39_v1_chr11_-_20282684_20282770	0.012285778628713809	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004634.7|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	ENSMUST00000109594.8|Slc1a4|ENSMUSG00000020142.13|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm39_v1_chr10_+_73782857_73782903	0.012124446069532478	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000191709.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193739.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000195531.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr10_+_26648473_26648512	0.01211046360628948	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039557.9|Arhgap18|ENSMUSG00000039031.17|Rho GTPase activating protein 18
mm39_v1_chr5_-_123127148_123127194	0.012096646930190634	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046073.16|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr11_+_98689479_98689490	0.011853627430765826	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037930.13|Msl1|ENSMUSG00000052915.15|male specific lethal 1
mm39_v1_chr2_-_168609110_168609126	0.011599215329133754	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029061.12|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4	ENSMUST00000103074.2|Sall4|ENSMUSG00000027547.18|spalt like transcription factor 4
mm39_v1_chr6_-_50631418_50631427	0.011526159704430135	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000031853.8|Npvf|ENSMUSG00000029831.8|neuropeptide VF precursor
mm39_v1_chr11_-_77079794_77079794	0.011526067003634729	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108400.8|Efcab5|ENSMUSG00000050944.15|EF-hand calcium binding domain 5
mm39_v1_chr11_-_115167775_115167876	0.011498653525136552	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021078.3|Fdxr|ENSMUSG00000018861.9|ferredoxin reductase
mm39_v1_chr8_+_120955195_120955217	0.011388604492174085	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180448.3|Gse1|ENSMUSG00000031822.21|genetic suppressor element 1, coiled-coil protein
mm39_v1_chr17_-_52139693_52139706	0.011370434697512345	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr15_-_101801351_101801356	0.011367161835975463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100179.2|Krt76|ENSMUSG00000075402.2|keratin 76
mm39_v1_chr2_-_27365633_27365710	0.011231505665092657	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000138693.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000113941.9|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000077737.13|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr1_-_173018204_173018207	0.011189536009804012	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215878.2|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406	ENSMUST00000201132.3|Olfr1406|ENSMUSG00000058981.5|olfactory receptor 1406
mm39_v1_chr19_-_46033353_46033724	0.011175040584399129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000026252.14|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000156585.9|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000185355.7|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1	ENSMUST00000152946.8|Ldb1|ENSMUSG00000025223.16|LIM domain binding 1
mm39_v1_chr1_-_79417732_79417837	0.011091080452679463	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000185234.2|Scg2|ENSMUSG00000050711.8|secretogranin II	ENSMUST00000049972.6|Scg2|ENSMUSG00000050711.8|secretogranin II
mm39_v1_chr6_+_29859685_29859709	0.010987109521710196	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134438.2|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr2_-_86109346_86109432	0.010960258290773246	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217294.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000217245.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051	ENSMUST00000216432.2|Olfr1051|ENSMUSG00000075193.3|olfactory receptor 1051
mm39_v1_chr3_+_66127330_66127348	0.010896483261885628	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029421.6|Ptx3|ENSMUSG00000027832.6|pentraxin related gene
mm39_v1_chr11_+_99748741_99748744	0.010813957504769241	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107434.2|Gm11568|ENSMUSG00000069717.8|predicted gene 11568
mm39_v1_chr6_+_29859660_29859684	0.010723820081187715	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000128927.9|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chrX_-_94701983_94702115	0.010239423819887771	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000119640.8|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing	ENSMUST00000120620.8|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing	ENSMUST00000044382.7|Zc4h2|ENSMUSG00000035062.14|zinc finger, C4H2 domain containing
mm39_v1_chr14_-_118289557_118289597	0.01003825878095204	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022725.4|Dct|ENSMUSG00000022129.5|dopachrome tautomerase
mm39_v1_chr2_+_73102269_73102283	0.010034746602470796	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000090813.6|Sp9|ENSMUSG00000068859.6|trans-acting transcription factor 9
mm39_v1_chr4_+_19280850_19280908	0.010014101719102917	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102999.2|Cngb3|ENSMUSG00000056494.8|cyclic nucleotide gated channel beta 3
mm39_v1_chr14_+_32043944_32043999	0.00984577453476247	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022480.8|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like	ENSMUST00000228529.2|Ogdhl|ENSMUSG00000021913.9|oxoglutarate dehydrogenase-like
mm39_v1_chr6_+_63232955_63233024	0.00980169955526692	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095852.5|Grid2|ENSMUSG00000071424.11|glutamate receptor, ionotropic, delta 2
mm39_v1_chr4_-_35845204_35845204	0.009689958042559513	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chrX_+_55500170_55500264	0.009248023966105539	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr5_+_14075281_14075305	0.0091802585730817	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000073957.8|Sema3e|ENSMUSG00000063531.8|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
mm39_v1_chr2_+_85648823_85648823	0.009149185505180433	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214416.2|Olfr1018|ENSMUSG00000043892.4|olfactory receptor 1018
mm39_v1_chr16_-_63684477_63684545	0.009080920857139007	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232654.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3	ENSMUST00000064405.8|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr8_+_22996233_22996247	0.009060819355877747	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000210854.2|Slc20a2|ENSMUSG00000037656.10|solute carrier family 20, member 2
mm39_v1_chr4_+_21848039_21848077	0.008990424319920432	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098238.9|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich	ENSMUST00000108229.2|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich
mm39_v1_chr3_-_141687987_141688025	0.008917430687407845	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029948.15|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr10_+_73657753_73657810	0.008654694997100271	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134009.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177420.7|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125006.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr8_-_62576140_62576157	0.008614132472750927	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034052.14|Anxa10|ENSMUSG00000031635.15|annexin A10	ENSMUST00000034054.9|Anxa10|ENSMUSG00000031635.15|annexin A10
mm39_v1_chr6_-_136148820_136148887	0.008415094090222792	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000188999.3|Grin2b|ENSMUSG00000030209.15|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm39_v1_chr10_-_80257681_80257710	0.008368537657339026	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156244.2|Tcf3|ENSMUSG00000020167.15|transcription factor 3
mm39_v1_chr3_+_55689921_55689940	0.008118179660403155	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000075422.6|Mab21l1|ENSMUSG00000056947.6|mab-21-like 1
mm39_v1_chr12_-_104439589_104439633	0.00807748526467965	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000021513.6|Gsc|ENSMUSG00000021095.6|goosecoid homeobox
mm39_v1_chr17_-_31417834_31417886	0.008024321984847885	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000236793.2|Tmprss3|ENSMUSG00000024034.14|transmembrane protease, serine 3
mm39_v1_chr7_-_115459082_115459098	0.00794412577153158	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000206123.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr18_-_81029751_81029751	0.00790727164794671	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000238808.2|Sall3|ENSMUSG00000024565.11|spalt like transcription factor 3
mm39_v1_chr11_+_102495189_102495262	0.007895224190789902	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057893.7|Fzd2|ENSMUSG00000050288.7|frizzled class receptor 2
mm39_v1_chr6_+_28480336_28480369	0.007728300621476877	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001460.14|Snd1|ENSMUSG00000001424.15|staphylococcal nuclease and tudor domain containing 1	ENSMUST00000167201.2|Snd1|ENSMUSG00000001424.15|staphylococcal nuclease and tudor domain containing 1
mm39_v1_chr12_+_38831093_38831128	0.00771534037153661	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161513.9|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr4_-_52919172_52919178	0.007534016279186989	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107667.3|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272	ENSMUST00000213989.2|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272
mm39_v1_chr11_-_99213769_99213783	0.007110821079210369	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000038004.3|Krt25|ENSMUSG00000035831.3|keratin 25
mm39_v1_chr7_+_51528788_51528813	0.0070811647334515365	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107591.9|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr4_-_58499398_58499409	0.007071183720440789	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107570.2|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr16_-_74208180_74208314	0.007026055830048792	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr2_-_64806106_64806147	0.007013324692952063	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156765.2|Grb14|ENSMUSG00000026888.15|growth factor receptor bound protein 14
mm39_v1_chr12_-_101784727_101784800	0.0066694834146968935	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222587.2|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chr13_-_21847556_21847556	0.006665632166099676	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214321.2|Olfr1361|ENSMUSG00000049737.3|olfactory receptor 1361
mm39_v1_chr7_+_143792455_143792467	0.006637494123909998	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239495.2|Shank2|ENSMUSG00000037541.23|SH3 and multiple ankyrin repeat domains 2
mm39_v1_chr5_-_142515792_142515841	0.006637485714341231	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099400.3|Papolb|ENSMUSG00000074817.3|poly (A) polymerase beta (testis specific)
mm39_v1_chr14_-_68771138_68771205	0.006568909650241358	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000022640.8|Adam7|ENSMUSG00000022056.10|a disintegrin and metallopeptidase domain 7
mm39_v1_chr3_+_93301003_93301006	0.006469823128211899	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000045912.3|Rptn|ENSMUSG00000041984.3|repetin
mm39_v1_chr8_+_55407872_55407889	0.006279920210821742	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr2_-_17465410_17465446	0.00622051834091245	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000145492.2|Nebl|ENSMUSG00000053702.17|nebulette
mm39_v1_chr12_+_38833501_38833526	0.006211257172007682	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000159334.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr13_+_55547498_55547513	0.0061439263358706335	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057167.9|Slc34a1|ENSMUSG00000021490.12|solute carrier family 34 (sodium phosphate), member 1
mm39_v1_chr5_+_108842294_108842368	0.006127782232968926	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000013633.12|Fgfrl1|ENSMUSG00000008090.15|fibroblast growth factor receptor-like 1
mm39_v1_chr4_+_5724305_5724357	0.006089826379219039	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000108380.2|Fam110b|ENSMUSG00000049119.15|family with sequence similarity 110, member B
mm39_v1_chr16_-_37205277_37205293	0.006080416944407212	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114787.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114782.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114775.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr7_+_140147799_140147799	0.006077182217286684	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000210973.3|Olfr538|ENSMUSG00000095901.3|olfactory receptor 538
mm39_v1_chr15_-_11038077_11038077	0.005935902653718245	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000058007.7|Rxfp3|ENSMUSG00000060735.5|relaxin family peptide receptor 3
mm39_v1_chr10_+_115405891_115405927	0.005846705700520257	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000173620.2|A930009A15Rik|ENSMUSG00000092210.2|RIKEN cDNA A930009A15 gene
mm39_v1_chr13_+_111391544_111391552	0.005751585561421039	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054716.4|Actbl2|ENSMUSG00000055194.4|actin, beta-like 2
mm39_v1_chr16_-_63684425_63684443	0.005645268722904477	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232049.2|Epha3|ENSMUSG00000052504.8|Eph receptor A3
mm39_v1_chr17_+_93506590_93506601	0.005546107505296733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064775.8|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr17_+_69746321_69746321	0.005495547997023409	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000169935.2|Akain1|ENSMUSG00000091636.3|A kinase (PRKA) anchor inhibitor 1
mm39_v1_chr3_-_154760978_154761044	0.005229688337038623	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000064076.6|Tnni3k|ENSMUSG00000040086.14|TNNI3 interacting kinase
mm39_v1_chr11_+_51989508_51989640	0.005223588620447425	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020608.3|Ppp2ca|ENSMUSG00000020349.5|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm39_v1_chr12_+_38833454_38833482	0.005100767969907652	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161980.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160701.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr17_+_27775471_27775609	0.005075845306544673	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118599.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232265.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232013.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000114888.11|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231874.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000119486.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231825.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231866.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr5_+_115573055_115573088	0.004945633403602527	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000136586.6|Msi1|ENSMUSG00000054256.12|musashi RNA-binding protein 1
mm39_v1_chr17_+_93506435_93506459	0.004940319296628294	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234646.2|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1	ENSMUST00000234081.2|Adcyap1|ENSMUSG00000024256.8|adenylate cyclase activating polypeptide 1
mm39_v1_chr6_-_30936013_30936013	0.004713641590661662	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101589.5|Klf14|ENSMUSG00000073209.5|Kruppel-like factor 14
mm39_v1_chr19_-_11816583_11816583	0.00467286875600558	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214887.2|Olfr1417|ENSMUSG00000048292.4|olfactory receptor 1417
mm39_v1_chr2_+_59442378_59442453	0.0045349574324631175	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr18_-_24736521_24736609	0.004386191665444819	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000154205.2|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr16_-_37205302_37205341	0.004319187150784807	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114781.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like	ENSMUST00000114780.8|Stxbp5l|ENSMUSG00000022829.15|syntaxin binding protein 5-like
mm39_v1_chr3_-_110050312_110050326	0.004224559718707902	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr15_-_8739893_8739983	0.004204377588653129	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000157065.2|Slc1a3|ENSMUSG00000005360.15|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm39_v1_chr12_-_46863726_46863743	0.004199677350647462	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000219330.2|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr2_-_86088672_86088672	0.004150456559268618	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000216185.3|Olfr1049|ENSMUSG00000075194.4|olfactory receptor 1049
mm39_v1_chr6_+_115908709_115908819	0.00414310709606205	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032471.9|Rho|ENSMUSG00000030324.9|rhodopsin
mm39_v1_chr10_+_129186434_129186434	0.004068535829020529	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000077024.2|Olfr782|ENSMUSG00000095075.3|olfactory receptor 782
mm39_v1_chr2_+_22959452_22959467	0.004021703958990364	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000155602.4|Acbd5|ENSMUSG00000026781.18|acyl-Coenzyme A binding domain containing 5
mm39_v1_chr10_+_127256192_127256218	0.003981065867118674	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171434.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr13_-_113800172_113800212	0.003968104625887141	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054650.5|Hspb3|ENSMUSG00000051456.5|heat shock protein 3
mm39_v1_chr17_-_36008863_36008894	0.003915219657638977	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000146472.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr9_+_55448432_55448493	0.003895786648038503	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000034869.11|Isl2|ENSMUSG00000032318.13|insulin related protein 2 (islet 2)
mm39_v1_chr9_-_37580478_37580531	0.00386227083407156	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000011262.4|Panx3|ENSMUSG00000011118.5|pannexin 3
mm39_v1_chr14_+_53562089_53562089	0.0037691125381925632	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000178100.3|Trav7n-6|ENSMUSG00000105080.2|T cell receptor alpha variable 7N-6
mm39_v1_chr7_+_144392323_144392354	0.0037679784691525284	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000105898.2|Fgf3|ENSMUSG00000031074.15|fibroblast growth factor 3
mm39_v1_chr2_-_88559941_88559941	0.0037214622057164404	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000099815.2|Olfr1197|ENSMUSG00000075119.3|olfactory receptor 1197
mm39_v1_chr11_+_115225557_115225675	0.0036826942492071213	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000106543.8|Otop3|ENSMUSG00000018862.12|otopetrin 3	ENSMUST00000019006.5|Otop3|ENSMUSG00000018862.12|otopetrin 3
mm39_v1_chr1_+_88234454_88234481	0.0036765179802511847	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040210.14|Trpm8|ENSMUSG00000036251.17|transient receptor potential cation channel, subfamily M, member 8
mm39_v1_chr13_-_78344492_78344561	0.0036067027723873904	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000125176.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr19_-_7943365_7943401	0.0035118747096692508	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000182102.8|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27	ENSMUST00000075619.5|Slc22a27|ENSMUSG00000067656.14|solute carrier family 22, member 27
mm39_v1_chr3_-_32546380_32546380	0.0034602426117676948	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000164954.3|Kcnmb3|ENSMUSG00000091091.3|potassium large conductance calcium-activated channel, subfamily M, beta member 3
mm39_v1_chr3_-_72875187_72875202	0.0034145932234979585	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000167334.8|Sis|ENSMUSG00000027790.15|sucrase isomaltase (alpha-glucosidase)
mm39_v1_chr18_-_43925932_43925949	0.0033960012742546334	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000237926.2|Gm94|ENSMUSG00000071858.5|predicted gene 94	ENSMUST00000096570.4|Gm94|ENSMUSG00000071858.5|predicted gene 94
mm39_v1_chr8_-_62355690_62355762	0.003363433376993409	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000121785.9|Palld|ENSMUSG00000058056.17|palladin, cytoskeletal associated protein	ENSMUST00000034057.14|Palld|ENSMUSG00000058056.17|palladin, cytoskeletal associated protein
mm39_v1_chrX_-_142716085_142716149	0.003342493660254633	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000087313.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr2_+_153780138_153780143	0.003335657706735957	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109757.8|Bpifb4|ENSMUSG00000074665.12|BPI fold containing family B, member 4	ENSMUST00000154281.3|Bpifb4|ENSMUSG00000074665.12|BPI fold containing family B, member 4
mm39_v1_chr19_+_25649767_25649789	0.0033085747721816943	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000053068.7|Dmrt2|ENSMUSG00000048138.11|doublesex and mab-3 related transcription factor 2
mm39_v1_chr10_+_32959472_32959563	0.003296641115637793	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000095762.5|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000218281.2|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000217779.2|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000219665.2|Trdn|ENSMUSG00000019787.10|triadin	ENSMUST00000219931.2|Trdn|ENSMUSG00000019787.10|triadin
mm39_v1_chr1_+_100025486_100025486	0.0032213969392978527	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000188735.2|Cntnap5b|ENSMUSG00000067028.12|contactin associated protein-like 5B
mm39_v1_chr10_+_20024203_20024224	0.003201742750615139	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020173.16|Map7|ENSMUSG00000019996.18|microtubule-associated protein 7
mm39_v1_chr16_-_74208395_74208431	0.0031555107489228077	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000227347.2|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr15_-_101482320_101482349	0.0031499769381388436	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042957.6|Krt75|ENSMUSG00000022986.6|keratin 75
mm39_v1_chr6_-_131662707_131662707	0.003119016079132636	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072404.3|Tas2r104|ENSMUSG00000061977.3|taste receptor, type 2, member 104
mm39_v1_chr9_+_38435026_38435026	0.0031062446119017955	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000074987.3|Olfr911-ps1|ENSMUSG00000062621.4|olfactory receptor 911, pseudogene 1
mm39_v1_chr18_+_9707595_9707637	0.003067050472881435	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234965.2|Colec12|ENSMUSG00000036103.10|collectin sub-family member 12
mm39_v1_chr1_-_172964941_172964941	0.003062639561388101	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000200689.5|Olfr1408|ENSMUSG00000062527.7|olfactory receptor 1408
mm39_v1_chr5_+_27466914_27467004	0.0030531385602739487	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000101471.4|Dpp6|ENSMUSG00000061576.16|dipeptidylpeptidase 6
mm39_v1_chr10_-_129000620_129000620	0.0030159513145603055	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214271.2|Olfr771|ENSMUSG00000061367.4|olfactory receptor 771
mm39_v1_chr18_+_37952556_37952571	0.0030071085204190586	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000055935.11|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr5_-_87630117_87630142	0.0029969882083039235	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000079811.13|Ugt2a2|ENSMUSG00000029268.15|UDP glucuronosyltransferase 2 family, polypeptide A2	ENSMUST00000144144.3|Ugt2a2|ENSMUSG00000029268.15|UDP glucuronosyltransferase 2 family, polypeptide A2
mm39_v1_chr6_-_136758716_136758804	0.0029947640083190764	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr2_+_85838122_85838122	0.0029732011744045108	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062166.2|Olfr1032|ENSMUSG00000042796.3|olfactory receptor 1032
mm39_v1_chr10_-_43934774_43934879	0.0029166133231270175	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239010.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr15_+_101371353_101371359	0.0028933721303021766	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000088049.5|Krt86|ENSMUSG00000067614.6|keratin 86
mm39_v1_chr17_-_31417932_31417951	0.0028674694615447366	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000114549.4|Tmprss3|ENSMUSG00000024034.14|transmembrane protease, serine 3
mm39_v1_chr8_-_88686188_88686223	0.0028630061210522216	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109655.9|Zfp423|ENSMUSG00000045333.16|zinc finger protein 423
mm39_v1_chr9_+_96140781_96140838	0.002855826233119351	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000190104.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000179416.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000189606.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr9_+_37829844_37829844	0.00284843381276659	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000212878.2|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878	ENSMUST00000086061.4|Olfr878|ENSMUSG00000066747.7|olfactory receptor 878
mm39_v1_chr8_-_32408786_32408830	0.0028181616944395146	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000239000.2|Nrg1|ENSMUSG00000118541.2|neuregulin 1
mm39_v1_chr7_+_10177258_10177258	0.002753845948495017	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000226237.2|Vmn1r67|ENSMUSG00000046716.8|vomeronasal 1 receptor 67
mm39_v1_chr18_-_24736848_24736900	0.002733435549369765	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000070726.10|Slc39a6|ENSMUSG00000024270.12|solute carrier family 39 (metal ion transporter), member 6
mm39_v1_chr8_+_46080840_46080866	0.0027312904444699517	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000135336.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr15_-_13173736_13173791	0.0027222129429355178	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr2_+_106523532_106523624	0.002698884436005449	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr1_+_152626273_152626315	0.002642649677614495	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000068875.5|Apobec4|ENSMUSG00000055547.5|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm39_v1_chr14_+_33662976_33663011	0.0026370148445278027	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100720.2|Gdf2|ENSMUSG00000072625.2|growth differentiation factor 2
mm39_v1_chr3_+_10153163_10153190	0.0025955408153894924	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061419.9|Gm9833|ENSMUSG00000049230.9|predicted gene 9833
mm39_v1_chr8_-_3675274_3675288	0.00257006693606488	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004749.7|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr14_-_80008745_80008758	0.0025430917399027844	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr7_-_98790275_98790356	0.0024346598703001775	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037968.10|Uvrag|ENSMUSG00000035354.10|UV radiation resistance associated gene
mm39_v1_chr17_+_75312520_75312563	0.0024322364652989343	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr6_+_145879839_145879862	0.002401821415971857	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032383.14|Sspn|ENSMUSG00000030255.14|sarcospan
mm39_v1_chr2_-_89137418_89137418	0.0023645983757842963	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000216144.3|Olfr1231|ENSMUSG00000075093.4|olfactory receptor 1231
mm39_v1_chr9_+_96140750_96140764	0.0023572051043038197	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000186609.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr11_+_67689094_67689113	0.0023022152755470394	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000168612.8|Dhrs7c|ENSMUSG00000033044.13|dehydrogenase/reductase (SDR family) member 7C
mm39_v1_chr10_+_101994841_101994940	0.002259485570617238	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020039.13|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr4_+_109835224_109835250	0.0022273166523877224	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061187.4|Dmrta2|ENSMUSG00000047143.4|doublesex and mab-3 related transcription factor like family A2
mm39_v1_chr11_-_59466995_59467061	0.002140339805372582	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215339.2|Olfr222|ENSMUSG00000059610.6|olfactory receptor 222	ENSMUST00000214351.2|Olfr222|ENSMUSG00000059610.6|olfactory receptor 222
mm39_v1_chr4_+_80752360_80752467	0.002116242728406818	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133655.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1	ENSMUST00000006151.13|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr14_-_109151590_109151615	0.0021019648238227856	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000100322.4|Slitrk1|ENSMUSG00000075478.4|SLIT and NTRK-like family, member 1
mm39_v1_chr16_-_29363671_29363687	0.0020935794172629975	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039090.9|Atp13a4|ENSMUSG00000038094.16|ATPase type 13A4
mm39_v1_chr6_-_57512355_57512433	0.0020909348172311686	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042766.6|Ppm1k|ENSMUSG00000037826.6|protein phosphatase 1K (PP2C domain containing)
mm39_v1_chr13_-_56399976_56399994	0.0020621981121674497	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000058475.6|Neurog1|ENSMUSG00000048904.6|neurogenin 1
mm39_v1_chr4_+_80752535_80752550	0.002035532575292229	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000102831.8|Tyrp1|ENSMUSG00000005994.15|tyrosinase-related protein 1
mm39_v1_chr8_+_46111703_46111764	0.0020244464578394435	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000134675.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000139869.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000126067.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr18_+_57601541_57601614	0.001998723727914601	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000091892.4|Ctxn3|ENSMUSG00000069372.4|cortexin 3	ENSMUST00000209782.2|Ctxn3|ENSMUSG00000069372.4|cortexin 3
mm39_v1_chr1_+_177557380_177557405	0.0019959779867876584	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000016106.6|1700016C15Rik|ENSMUSG00000015962.6|RIKEN cDNA 1700016C15 gene
mm39_v1_chr3_+_103739877_103739917	0.001973885465077392	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000062945.12|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr8_-_45835234_45835328	0.0019071985510954303	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000093526.13|Fam149a|ENSMUSG00000070044.16|family with sequence similarity 149, member A
mm39_v1_chr1_-_93088562_93088592	0.0019007403968836953	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143419.2|Mab21l4|ENSMUSG00000034159.13|mab-21-like 4
mm39_v1_chr7_-_101765915_101765926	0.0018729451213730125	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000084830.2|Chrna10|ENSMUSG00000066279.4|cholinergic receptor, nicotinic, alpha polypeptide 10
mm39_v1_chr12_+_31488208_31488226	0.0018704218289944663	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000001254.6|Slc26a3|ENSMUSG00000001225.13|solute carrier family 26, member 3
mm39_v1_chr11_+_16207705_16207808	0.001856973117774182	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000109645.9|Vstm2a|ENSMUSG00000048834.17|V-set and transmembrane domain containing 2A	ENSMUST00000109647.3|Vstm2a|ENSMUSG00000048834.17|V-set and transmembrane domain containing 2A
mm39_v1_chr4_-_97472844_97472880	0.0018296973544524473	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107067.8|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene	ENSMUST00000107068.9|E130114P18Rik|ENSMUSG00000048747.15|RIKEN cDNA E130114P18 gene
mm39_v1_chr16_-_57575070_57575100	0.0018109325390877485	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000089332.5|Col8a1|ENSMUSG00000068196.6|collagen, type VIII, alpha 1
mm39_v1_chr18_+_37952596_37952623	0.0017787359829891996	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000193890.2|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5	ENSMUST00000193941.2|Pcdhgc5|ENSMUSG00000102543.6|protocadherin gamma subfamily C, 5
mm39_v1_chr3_-_144514386_144514386	0.0017470032297088945	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000197013.2|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chr11_+_58468556_58468556	0.001727829621358039	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000203418.4|Olfr325|ENSMUSG00000060765.9|olfactory receptor 325
mm39_v1_chr4_+_114678919_114678919	0.001721390919415245	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000137570.2|Gm12830|ENSMUSG00000055198.4|predicted gene 12830
mm39_v1_chr6_-_84565613_84565629	0.0017175832493994002	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000204146.3|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr1_+_172383499_172383509	0.0016651634899269424	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000061835.10|Vsig8|ENSMUSG00000049598.10|V-set and immunoglobulin domain containing 8
mm39_v1_chr8_-_37420293_37420314	0.0016548949506380686	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000179501.2|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr17_-_37430949_37430975	0.001653715674258046	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214994.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92	ENSMUST00000216341.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92
mm39_v1_chr11_-_33942981_33942998	0.0016455427227191671	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000238903.2|Kcnip1|ENSMUSG00000053519.18|Kv channel-interacting protein 1
mm39_v1_chr13_-_114595122_114595272	0.0016035216858918135	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000231252.2|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr9_+_38517763_38517763	0.0015837599381718012	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057755.2|Olfr914|ENSMUSG00000047050.3|olfactory receptor 914
mm39_v1_chr5_-_90788460_90788559	0.0015533687324098783	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000202704.4|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6
mm39_v1_chr1_+_132155922_132155922	0.001550955749664212	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000191418.2|Lemd1|ENSMUSG00000079330.10|LEM domain containing 1
mm39_v1_chr14_-_48902555_48902572	0.0015152042318666227	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000118578.9|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr11_-_99979052_99979096	0.0015128731045662759	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000107419.2|Krt32|ENSMUSG00000046095.6|keratin 32
mm39_v1_chr16_-_96971905_96971952	0.0015126363750511825	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000056102.9|Dscam|ENSMUSG00000050272.11|DS cell adhesion molecule
mm39_v1_chr9_+_102382949_102382949	0.0014435448691255024	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000039390.6|Ky|ENSMUSG00000035606.9|kyphoscoliosis peptidase
mm39_v1_chr12_-_111947487_111947498	0.001429706070719059	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000190536.2|Rd3l|ENSMUSG00000091402.8|retinal degeneration 3-like
mm39_v1_chr1_-_92446141_92446141	0.001409176713419898	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000189174.2|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr3_+_93376058_93376063	0.0013651184651952812	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000029516.3|Tchhl1|ENSMUSG00000027908.3|trichohyalin-like 1
mm39_v1_chr3_-_154034271_154034300	0.001330457241418207	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000204403.2|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
mm39_v1_chr8_+_21382681_21382685	0.0012947458343194381	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000098908.4|Defb33|ENSMUSG00000074454.4|defensin beta 33
mm39_v1_chr9_-_76120939_76120939	0.0012913775400947866	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000074880.6|Gfral|ENSMUSG00000059383.15|GDNF family receptor alpha like
mm39_v1_chr7_+_63835154_63835207	0.0012786276381229597	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000177102.8|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1
mm39_v1_chr5_-_66672158_66672180	0.0012674364036392657	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000161879.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159357.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr18_-_39000056_39000070	0.001267240310162849	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000236630.2|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1	ENSMUST00000237356.2|Fgf1|ENSMUSG00000036585.17|fibroblast growth factor 1
mm39_v1_chr13_+_27241551_27241567	0.0012615701394248604	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000110369.10|Prl|ENSMUSG00000021342.15|prolactin	ENSMUST00000224228.2|Prl|ENSMUSG00000021342.15|prolactin	ENSMUST00000018061.7|Prl|ENSMUSG00000021342.15|prolactin
mm39_v1_chr6_-_131607875_131607875	0.0012372322949333898	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000067597.5|Tas2r130|ENSMUSG00000054497.6|taste receptor, type 2, member 130
mm39_v1_chr10_+_29074950_29074950	0.0012324455657872664	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000217011.2|Gm49353|ENSMUSG00000110723.2|predicted gene, 49353
mm39_v1_chr17_-_72059865_72059889	0.0012137271363229882	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000057405.9|Pcare|ENSMUSG00000044375.9|photoreceptor cilium actin regulator
mm39_v1_chr5_+_107656810_107656810	0.001162991836244908	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160160.6|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr15_+_92495007_92495051	0.0011603847010320288	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000035399.10|Pdzrn4|ENSMUSG00000036218.17|PDZ domain containing RING finger 4
mm39_v1_chr10_+_59239466_59239491	0.0011584995409184109	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000009790.14|Pla2g12b|ENSMUSG00000009646.14|phospholipase A2, group XIIB
mm39_v1_chr8_+_24159669_24159690	0.001126576264069797	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000042352.11|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4	ENSMUST00000207301.2|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4
mm39_v1_chr12_-_111947536_111947547	0.001118456773508281	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000185354.2|Rd3l|ENSMUSG00000091402.8|retinal degeneration 3-like
mm39_v1_chr10_-_76276278_76276278	0.0011109408889501723	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000235907.2|ENSMUSG00000117965.2|ENSMUSG00000117965.2|novel protein
mm39_v1_chr8_+_46111778_46111841	0.0011017067747084097	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000143820.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr1_-_158183894_158183914	0.0010934736920212176	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000004133.11|Brinp2|ENSMUSG00000004031.14|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm39_v1_chr9_+_37715185_37715185	0.0010913357277726808	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000086064.3|Olfr876|ENSMUSG00000066750.4|olfactory receptor 876
mm39_v1_chr6_-_138056914_138056914	0.0010535280564666141	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000171804.4|Slc15a5|ENSMUSG00000044378.13|solute carrier family 15, member 5
mm39_v1_chr3_-_54962899_54962911	0.0010444302555548493	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199144.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr14_-_48904958_48904994	0.0010353506489271733	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000144465.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2	ENSMUST00000133479.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2	ENSMUST00000119070.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2	ENSMUST00000226501.2|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr2_+_177969456_177969585	0.0010224562870554332	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133267.3|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr3_+_94320548_94320708	0.0009769556262502453	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000166032.8|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000200486.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000196386.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000045245.10|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000197901.5|Tdrkh|ENSMUSG00000041912.13|tudor and KH domain containing protein	ENSMUST00000198041.2|Gm42463|ENSMUSG00000106032.2|predicted gene 42463
mm39_v1_chr8_-_71978355_71978374	0.0009549374629793944	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000207913.2|Ccdc194|ENSMUSG00000108900.2|coiled-coil domain containing 194
mm39_v1_chr5_+_88603847_88603870	0.0009426187771566105	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000198265.5|Ambn|ENSMUSG00000029288.12|ameloblastin	ENSMUST00000031226.9|Ambn|ENSMUSG00000029288.12|ameloblastin
mm39_v1_chr3_-_88194517_88194517	0.0009404287115394994	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000165196.8|Gm38392|ENSMUSG00000103766.6|predicted gene, 38392
mm39_v1_chr7_+_131144596_131144596	0.0009300457556025791	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000046093.6|Hmx3|ENSMUSG00000040148.6|H6 homeobox 3
mm39_v1_chr6_-_128252540_128252540	0.0008766700742506713	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000130454.8|Tead4|ENSMUSG00000030353.16|TEA domain family member 4
mm39_v1_chr13_-_73826108_73826120	0.0008568748645268387	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000222029.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000223074.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000220650.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18	ENSMUST00000221987.2|Slc6a18|ENSMUSG00000021612.16|solute carrier family 6 (neurotransmitter transporter), member 18
mm39_v1_chr13_-_64645606_64645606	0.0008521203007330862	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000180282.2|Fam240b|ENSMUSG00000096537.7|family with sequence similarity 240 member B
mm39_v1_chr13_-_78345932_78346049	0.0008388521945959406	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000127137.3|Nr2f1|ENSMUSG00000069171.15|nuclear receptor subfamily 2, group F, member 1
mm39_v1_chr15_-_101710781_101710802	0.0008128354957409184	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000063292.8|Krt73|ENSMUSG00000063661.7|keratin 73
mm39_v1_chr8_+_57774010_57774027	0.0008052265078935754	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr2_+_38231080_38231104	0.0008047804835136256	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000133661.8|Lhx2|ENSMUSG00000000247.12|LIM homeobox protein 2
mm39_v1_chr5_+_104473195_104473234	0.0007982058600911987	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000066207.4|Mepe|ENSMUSG00000053863.4|matrix extracellular phosphoglycoprotein with ASARM motif (bone)
mm39_v1_chr6_+_8948608_8948619	0.0007889490682451165	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr8_+_121842902_121842916	0.0007068036360744435	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr3_+_55369149_55369284	0.0006961936896906465	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199585.5|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1	ENSMUST00000070418.9|Dclk1|ENSMUSG00000027797.16|doublecortin-like kinase 1
mm39_v1_chr10_+_88721854_88721872	0.0006736884899567464	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000020255.8|Slc5a8|ENSMUSG00000020062.8|solute carrier family 5 (iodide transporter), member 8
mm39_v1_chr16_-_56688024_56688078	0.0006465522997224802	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000232373.2|Tmem45a|ENSMUSG00000022754.7|transmembrane protein 45a
mm39_v1_chr11_-_33153587_33153612	0.0006187140207933724	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000037746.8|Tlx3|ENSMUSG00000040610.8|T cell leukemia, homeobox 3
mm39_v1_chr14_-_48904998_48905101	0.0005866219941159331	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000152018.8|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr1_+_92499044_92499044	0.0005349797008883742	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000214239.2|Olfr1413|ENSMUSG00000058904.4|olfactory receptor 1413
mm39_v1_chr17_+_47221377_47221390	0.0005060988736933957	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000024773.6|Prph2|ENSMUSG00000023978.6|peripherin 2
mm39_v1_chrX_+_73171069_73171075	0.0005024365514950846	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000033771.11|Opn1mw|ENSMUSG00000031394.12|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	ENSMUST00000101457.10|Opn1mw|ENSMUSG00000031394.12|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
mm39_v1_chr11_-_99501015_99501079	0.0004898709066870308	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000076478.2|Gm11937|ENSMUSG00000058725.2|predicted gene 11937
mm39_v1_chr6_+_87405968_87405982	0.0004081082648868008	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000032125.7|Bmp10|ENSMUSG00000030046.7|bone morphogenetic protein 10
mm39_v1_chr4_-_43823866_43823895	0.0003123115013604814	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000215406.2|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156	ENSMUST00000079234.6|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156	ENSMUST00000214843.2|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156
mm39_v1_chr1_-_37955569_37955576	0.0002257257003703364	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000078307.7|Lyg2|ENSMUSG00000061584.7|lysozyme G-like 2
mm39_v1_chr3_-_59127571_59127680	0.00021814231399268293	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000199675.2|P2ry12|ENSMUSG00000036353.14|purinergic receptor P2Y, G-protein coupled 12	ENSMUST00000170388.6|P2ry12|ENSMUSG00000036353.14|purinergic receptor P2Y, G-protein coupled 12
mm39_v1_chr1_+_6805048_6805100	0.00014200061462018936	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000139838.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr17_+_3447465_3447482	8.987285788582496e-05	Msx1_Lhx9_Barx1_Rax_Dlx6	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
