mm39_v1_chr13_+_23728222_23728222	1.1467538067529628	Msx2_Hoxd4	ENSMUST00000075558.5|H3c7|ENSMUSG00000100210.3|H3 clustered histone 7
mm39_v1_chr5_-_62923463_62923615	0.9893030084053652	Msx2_Hoxd4	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr2_-_104324035_104324098	0.7728938564565035	Msx2_Hoxd4	ENSMUST00000111124.8|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr5_+_107655487_107655487	0.6731356581502045	Msx2_Hoxd4	ENSMUST00000143074.2|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr7_+_140181182_140181253	0.6020583399509762	Msx2_Hoxd4	ENSMUST00000214180.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46	ENSMUST00000211771.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46
mm39_v1_chr5_-_84565218_84565248	0.5446975777425734	Msx2_Hoxd4	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chrX_-_7242065_7242069	0.45016995744222466	Msx2_Hoxd4	ENSMUST00000191497.2|Usp27x|ENSMUSG00000046269.18|ubiquitin specific peptidase 27, X chromosome	ENSMUST00000115744.2|Usp27x|ENSMUSG00000046269.18|ubiquitin specific peptidase 27, X chromosome
mm39_v1_chrM_+_9870_9885	0.4463132993708192	Msx2_Hoxd4	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.1|mitochondrially encoded NADH dehydrogenase 4L
mm39_v1_chr2_+_87404246_87404247	0.4167378141726479	Msx2_Hoxd4	ENSMUST00000213315.2|Olfr1129|ENSMUSG00000062272.5|olfactory receptor 1129	ENSMUST00000214773.2|Olfr1129|ENSMUSG00000062272.5|olfactory receptor 1129
mm39_v1_chr17_-_37523969_37524009	0.4165791409095769	Msx2_Hoxd4	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr16_+_14523696_14523722	0.3323815203998639	Msx2_Hoxd4	ENSMUST00000023356.8|Snai2|ENSMUSG00000022676.8|snail family zinc finger 2
mm39_v1_chrX_+_158491589_158491638	0.3305779628152758	Msx2_Hoxd4	ENSMUST00000080394.13|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chr2_-_73284262_73284323	0.3235718207053791	Msx2_Hoxd4	ENSMUST00000102679.8|Wipf1|ENSMUSG00000075284.11|WAS/WASL interacting protein family, member 1
mm39_v1_chr14_-_50586329_50586329	0.3091335746179556	Msx2_Hoxd4	ENSMUST00000216634.2|Olfr735|ENSMUSG00000046210.8|olfactory receptor 735
mm39_v1_chr2_-_45000389_45000766	0.3087045468959695	Msx2_Hoxd4	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr7_+_140261864_140261864	0.30777898874061504	Msx2_Hoxd4	ENSMUST00000214637.3|Olfr45|ENSMUSG00000066122.7|olfactory receptor 45
mm39_v1_chr1_+_171668122_171668137	0.3032479478760062	Msx2_Hoxd4	ENSMUST00000135386.2|Cd84|ENSMUSG00000038147.15|CD84 antigen
mm39_v1_chr3_+_63988968_63988968	0.30309029840553475	Msx2_Hoxd4	ENSMUST00000029406.6|Vmn2r1|ENSMUSG00000027824.6|vomeronasal 2, receptor 1
mm39_v1_chr18_+_4920513_4920584	0.3027533675630724	Msx2_Hoxd4	ENSMUST00000126977.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr15_+_102885467_102885467	0.2963040827711848	Msx2_Hoxd4	ENSMUST00000001706.7|Hoxc9|ENSMUSG00000036139.7|homeobox C9
mm39_v1_chr6_-_36787096_36787155	0.29626916898548283	Msx2_Hoxd4	ENSMUST00000201321.2|Ptn|ENSMUSG00000029838.12|pleiotrophin	ENSMUST00000101534.5|Ptn|ENSMUSG00000029838.12|pleiotrophin
mm39_v1_chr6_+_57180275_57180275	0.27877138409694296	Msx2_Hoxd4	ENSMUST00000226892.2|Vmn1r13|ENSMUSG00000064259.3|vomeronasal 1 receptor 13	ENSMUST00000227421.2|Vmn1r13|ENSMUSG00000064259.3|vomeronasal 1 receptor 13
mm39_v1_chr2_+_83554770_83554858	0.2753641956452851	Msx2_Hoxd4	ENSMUST00000141725.3|Itgav|ENSMUSG00000027087.12|integrin alpha V
mm39_v1_chr15_+_31224616_31224706	0.27242536308047743	Msx2_Hoxd4	ENSMUST00000186547.7|Dap|ENSMUSG00000039168.16|death-associated protein
mm39_v1_chr13_+_22508759_22508759	0.2713739672652657	Msx2_Hoxd4	ENSMUST00000226225.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197	ENSMUST00000227017.2|Vmn1r197|ENSMUSG00000069294.3|vomeronasal 1 receptor 197
mm39_v1_chr2_+_71884943_71884984	0.26520050391710215	Msx2_Hoxd4	ENSMUST00000028525.6|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4
mm39_v1_chr2_+_87137925_87137925	0.26328077128864996	Msx2_Hoxd4	ENSMUST00000216396.3|Olfr1118|ENSMUSG00000083706.4|olfactory receptor 1118
mm39_v1_chr14_+_8283087_8283087	0.25860611135564293	Msx2_Hoxd4	ENSMUST00000206298.3|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720	ENSMUST00000216079.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr18_+_7905440_7905475	0.2583230766307762	Msx2_Hoxd4	ENSMUST00000170854.2|Wac|ENSMUSG00000024283.16|WW domain containing adaptor with coiled-coil
mm39_v1_chr7_-_73187369_73187513	0.2462660480544037	Msx2_Hoxd4	ENSMUST00000172704.6|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr12_-_76224025_76224039	0.23958965672146493	Msx2_Hoxd4	ENSMUST00000101291.11|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)	ENSMUST00000218621.2|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)	ENSMUST00000076634.5|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)
mm39_v1_chr7_+_107497109_107497109	0.2339456998763492	Msx2_Hoxd4	ENSMUST00000209670.4|Olfr472|ENSMUSG00000073893.7|olfactory receptor 472	ENSMUST00000216937.3|Olfr472|ENSMUSG00000073893.7|olfactory receptor 472
mm39_v1_chrM_-_14061_14077	0.23348204323385974	Msx2_Hoxd4	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm39_v1_chr2_+_88217406_88217406	0.2309831830364943	Msx2_Hoxd4	ENSMUST00000214040.3|Olfr1178|ENSMUSG00000056995.4|olfactory receptor 1178
mm39_v1_chr12_+_108145802_108145842	0.22977394734303072	Msx2_Hoxd4	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr18_+_37453427_37453470	0.22325537026855471	Msx2_Hoxd4	ENSMUST00000078271.4|Pcdhb5|ENSMUSG00000063687.4|protocadherin beta 5
mm39_v1_chr5_-_102217770_102217807	0.22259378524698992	Msx2_Hoxd4	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr6_-_119940694_119940797	0.2207409038282346	Msx2_Hoxd4	ENSMUST00000161512.3|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr13_-_23302027_23302027	0.2176917825058805	Msx2_Hoxd4	ENSMUST00000228656.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr11_-_73742280_73742280	0.21366736473886236	Msx2_Hoxd4	ENSMUST00000213365.2|Olfr393|ENSMUSG00000094488.3|olfactory receptor 393
mm39_v1_chr13_-_23302396_23302396	0.2105348589637981	Msx2_Hoxd4	ENSMUST00000227110.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr15_-_36165017_36165030	0.2077427822828132	Msx2_Hoxd4	ENSMUST00000058643.4|Fbxo43|ENSMUSG00000048230.7|F-box protein 43
mm39_v1_chr9_+_77959206_77959231	0.19615360497042653	Msx2_Hoxd4	ENSMUST00000024104.9|Gcm1|ENSMUSG00000023333.9|glial cells missing homolog 1
mm39_v1_chr10_-_129530155_129530155	0.19510226035854059	Msx2_Hoxd4	ENSMUST00000204641.3|Olfr803|ENSMUSG00000046041.5|olfactory receptor 803
mm39_v1_chr7_-_139941566_139941584	0.18521735107074996	Msx2_Hoxd4	ENSMUST00000215023.2|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60	ENSMUST00000216027.2|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60	ENSMUST00000210932.3|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60	ENSMUST00000211031.3|Olfr60|ENSMUSG00000060112.5|olfactory receptor 60
mm39_v1_chr6_+_136495818_136495850	0.17986582045743035	Msx2_Hoxd4	ENSMUST00000186577.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr2_-_32976378_32976452	0.17811876194869644	Msx2_Hoxd4	ENSMUST00000049618.9|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr10_-_14593935_14593972	0.17097845520198401	Msx2_Hoxd4	ENSMUST00000020016.5|Gje1|ENSMUSG00000019867.5|gap junction protein, epsilon 1
mm39_v1_chr13_+_49761506_49761539	0.16994353326006456	Msx2_Hoxd4	ENSMUST00000021822.7|Ogn|ENSMUSG00000021390.7|osteoglycin
mm39_v1_chr13_+_49697919_49698009	0.16348788675497714	Msx2_Hoxd4	ENSMUST00000177948.2|Aspn|ENSMUSG00000021388.15|asporin	ENSMUST00000021820.14|Aspn|ENSMUSG00000021388.15|asporin
mm39_v1_chrM_+_2743_2761	0.15945068184273373	Msx2_Hoxd4	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm39_v1_chr2_-_45001141_45001186	0.15828903982016324	Msx2_Hoxd4	ENSMUST00000201969.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201623.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr14_+_8282925_8282925	0.14852716709789116	Msx2_Hoxd4	ENSMUST00000217642.2|Olfr720|ENSMUSG00000052417.7|olfactory receptor 720
mm39_v1_chr8_-_26609153_26609260	0.13917300130680954	Msx2_Hoxd4	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr5_-_31684036_31684117	0.135990698975566	Msx2_Hoxd4	ENSMUST00000202421.2|Supt7l|ENSMUSG00000053134.14|SPT7-like, STAGA complex gamma subunit	ENSMUST00000201769.4|Supt7l|ENSMUSG00000053134.14|SPT7-like, STAGA complex gamma subunit	ENSMUST00000065388.11|Supt7l|ENSMUSG00000053134.14|SPT7-like, STAGA complex gamma subunit
mm39_v1_chr17_-_46638874_46638914	0.13475555077577658	Msx2_Hoxd4	ENSMUST00000047970.14|Abcc10|ENSMUSG00000032842.14|ATP-binding cassette, sub-family C (CFTR/MRP), member 10
mm39_v1_chr2_-_45002902_45003021	0.13326147777735842	Msx2_Hoxd4	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr15_+_80861966_80862046	0.12983119784501188	Msx2_Hoxd4	ENSMUST00000139517.9|Sgsm3|ENSMUSG00000042303.20|small G protein signaling modulator 3	ENSMUST00000137255.3|Sgsm3|ENSMUSG00000042303.20|small G protein signaling modulator 3	ENSMUST00000137004.2|Sgsm3|ENSMUSG00000042303.20|small G protein signaling modulator 3
mm39_v1_chr3_+_144283355_144283413	0.12838993656541703	Msx2_Hoxd4	ENSMUST00000151086.3|Selenof|ENSMUSG00000037072.17|selenoprotein F
mm39_v1_chr4_-_52859227_52859227	0.12755222164227967	Msx2_Hoxd4	ENSMUST00000107670.3|Olfr273|ENSMUSG00000049648.5|olfactory receptor 273
mm39_v1_chr6_-_67468831_67468850	0.1252497942849027	Msx2_Hoxd4	ENSMUST00000118364.2|Il23r|ENSMUSG00000049093.10|interleukin 23 receptor
mm39_v1_chr1_-_155293141_155293179	0.1201256723868438	Msx2_Hoxd4	ENSMUST00000111775.8|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1	ENSMUST00000111774.2|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr11_-_79421397_79421435	0.11498208641098774	Msx2_Hoxd4	ENSMUST00000103236.4|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a	ENSMUST00000170422.4|Evi2|ENSMUSG00000070354.14|ecotropic viral integration site 2	ENSMUST00000170799.8|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a
mm39_v1_chr10_-_33500583_33500765	0.11286759864028251	Msx2_Hoxd4	ENSMUST00000161692.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000160299.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000019920.13|Clvs2|ENSMUSG00000019785.15|clavesin 2
mm39_v1_chr4_+_35152056_35152056	0.11045828492451115	Msx2_Hoxd4	ENSMUST00000058595.7|Ifnk|ENSMUSG00000042993.7|interferon kappa
mm39_v1_chr2_+_87436556_87436600	0.10839927285620936	Msx2_Hoxd4	ENSMUST00000213103.3|Olfr1130|ENSMUSG00000059205.6|olfactory receptor 1130	ENSMUST00000216580.2|Olfr1130|ENSMUSG00000059205.6|olfactory receptor 1130
mm39_v1_chr6_+_124281607_124281659	0.10767504139724084	Msx2_Hoxd4	ENSMUST00000032234.5|Cd163|ENSMUSG00000008845.10|CD163 antigen	ENSMUST00000112541.8|Cd163|ENSMUSG00000008845.10|CD163 antigen
mm39_v1_chr10_+_127256736_127256786	0.10542342158775411	Msx2_Hoxd4	ENSMUST00000064793.13|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr15_-_43733389_43733456	0.1053379225364323	Msx2_Hoxd4	ENSMUST00000067469.6|Tmem74|ENSMUSG00000054409.6|transmembrane protein 74
mm39_v1_chr3_-_146200870_146200894	0.1041274653521247	Msx2_Hoxd4	ENSMUST00000093951.3|Spata1|ENSMUSG00000028188.14|spermatogenesis associated 1
mm39_v1_chrX_+_149330371_149330455	0.09393086282426855	Msx2_Hoxd4	ENSMUST00000066337.13|Alas2|ENSMUSG00000025270.14|aminolevulinic acid synthase 2, erythroid	ENSMUST00000112715.2|Alas2|ENSMUSG00000025270.14|aminolevulinic acid synthase 2, erythroid
mm39_v1_chr6_+_136495784_136495808	0.09247868321870935	Msx2_Hoxd4	ENSMUST00000032335.13|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein	ENSMUST00000185724.7|Atf7ip|ENSMUSG00000030213.13|activating transcription factor 7 interacting protein
mm39_v1_chr4_-_24851086_24851124	0.09223871430781985	Msx2_Hoxd4	ENSMUST00000084781.6|Klhl32|ENSMUSG00000040387.17|kelch-like 32	ENSMUST00000108218.10|Klhl32|ENSMUSG00000040387.17|kelch-like 32
mm39_v1_chr14_-_36641270_36641311	0.08649183217914674	Msx2_Hoxd4	ENSMUST00000182797.8|Ccser2|ENSMUSG00000058690.15|coiled-coil serine rich 2
mm39_v1_chr1_+_33947250_33947306	0.08570469891578396	Msx2_Hoxd4	ENSMUST00000183034.5|Dst|ENSMUSG00000026131.21|dystonin
mm39_v1_chr1_-_156766381_156766423	0.08169316720762626	Msx2_Hoxd4	ENSMUST00000188656.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr2_-_88519531_88519531	0.0794308999679213	Msx2_Hoxd4	ENSMUST00000213545.2|Olfr1195|ENSMUSG00000075121.3|olfactory receptor 1195
mm39_v1_chr6_+_68233361_68233373	0.07921787382986731	Msx2_Hoxd4	ENSMUST00000103320.3|Igkv14-111|ENSMUSG00000095771.3|immunoglobulin kappa variable 14-111
mm39_v1_chr6_+_149226891_149226956	0.07777127552677224	Msx2_Hoxd4	ENSMUST00000189837.2|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chr2_-_86857424_86857424	0.07643564837419707	Msx2_Hoxd4	ENSMUST00000214857.2|Olfr1104|ENSMUSG00000075166.3|olfactory receptor 1104	ENSMUST00000215972.2|Olfr1104|ENSMUSG00000075166.3|olfactory receptor 1104
mm39_v1_chr10_+_127256993_127257073	0.07567199940333746	Msx2_Hoxd4	ENSMUST00000170336.8|R3hdm2|ENSMUSG00000025404.16|R3H domain containing 2
mm39_v1_chr17_-_21006419_21006419	0.07565297544718451	Msx2_Hoxd4	ENSMUST00000233605.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228	ENSMUST00000232812.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228	ENSMUST00000233186.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228	ENSMUST00000233164.2|Vmn1r228|ENSMUSG00000060245.6|vomeronasal 1 receptor 228
mm39_v1_chrX_-_142716200_142716307	0.07168365802415624	Msx2_Hoxd4	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr5_-_53864874_53865047	0.07058881580017427	Msx2_Hoxd4	ENSMUST00000031093.5|Cckar|ENSMUSG00000029193.8|cholecystokinin A receptor
mm39_v1_chr6_-_87510200_87510246	0.06918880106048261	Msx2_Hoxd4	ENSMUST00000113637.9|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25	ENSMUST00000071024.7|Arhgap25|ENSMUSG00000030047.15|Rho GTPase activating protein 25
mm39_v1_chr17_-_29226700_29226804	0.06681065157939793	Msx2_Hoxd4	ENSMUST00000233441.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr7_-_120673761_120673795	0.06623129009903057	Msx2_Hoxd4	ENSMUST00000047194.4|Igsf6|ENSMUSG00000035004.4|immunoglobulin superfamily, member 6
mm39_v1_chr7_+_126549692_126549756	0.0631918236016838	Msx2_Hoxd4	ENSMUST00000106335.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2	ENSMUST00000146017.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr1_+_174192688_174192688	0.06222505438017285	Msx2_Hoxd4	ENSMUST00000217962.2|Olfr417|ENSMUSG00000066672.3|olfactory receptor 417	ENSMUST00000220394.2|Olfr417|ENSMUSG00000066672.3|olfactory receptor 417
mm39_v1_chr14_+_50360643_50360643	0.05911096038383575	Msx2_Hoxd4	ENSMUST00000215317.2|Olfr727|ENSMUSG00000059488.4|olfactory receptor 727
mm39_v1_chr7_-_73191484_73191503	0.0585643685309472	Msx2_Hoxd4	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr6_+_29361408_29361460	0.058394153449321716	Msx2_Hoxd4	ENSMUST00000156163.2|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr15_+_38869415_38869443	0.05635953593216751	Msx2_Hoxd4	ENSMUST00000179165.9|Fzd6|ENSMUSG00000022297.16|frizzled class receptor 6
mm39_v1_chr7_-_101494472_101494549	0.056248302652014	Msx2_Hoxd4	ENSMUST00000211566.2|Folr2|ENSMUSG00000032725.11|folate receptor 2 (fetal)	ENSMUST00000094141.7|Folr2|ENSMUSG00000032725.11|folate receptor 2 (fetal)	ENSMUST00000209329.2|Folr2|ENSMUSG00000032725.11|folate receptor 2 (fetal)
mm39_v1_chr1_-_133849131_133849152	0.05434477417184251	Msx2_Hoxd4	ENSMUST00000048432.6|Prelp|ENSMUSG00000041577.6|proline arginine-rich end leucine-rich repeat
mm39_v1_chr13_+_118851214_118851238	0.05286352589331924	Msx2_Hoxd4	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr7_+_122723365_122723446	0.052323285087296514	Msx2_Hoxd4	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr7_-_45570828_45570868	0.050917468551084866	Msx2_Hoxd4	ENSMUST00000038876.13|Emp3|ENSMUSG00000040212.13|epithelial membrane protein 3
mm39_v1_chr5_+_88073438_88073480	0.050129203713756135	Msx2_Hoxd4	ENSMUST00000001667.13|Csn3|ENSMUSG00000001622.16|casein kappa	ENSMUST00000113267.8|Csn3|ENSMUSG00000001622.16|casein kappa
mm39_v1_chr9_-_107648144_107648206	0.050070168062288055	Msx2_Hoxd4	ENSMUST00000183248.3|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182022.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000035199.13|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182659.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5
mm39_v1_chr3_-_68911807_68911832	0.048880189400585784	Msx2_Hoxd4	ENSMUST00000154741.8|Ift80|ENSMUSG00000027778.16|intraflagellar transport 80	ENSMUST00000148031.2|Ift80|ENSMUSG00000027778.16|intraflagellar transport 80
mm39_v1_chr7_-_10011933_10011933	0.04814552739399143	Msx2_Hoxd4	ENSMUST00000227719.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228622.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228086.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66
mm39_v1_chr4_-_43710231_43710255	0.04726678693119665	Msx2_Hoxd4	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr1_+_45834645_45834692	0.04648680834777019	Msx2_Hoxd4	ENSMUST00000147308.2|Wdr75|ENSMUSG00000025995.17|WD repeat domain 75
mm39_v1_chr1_-_132318039_132318105	0.04304743300987637	Msx2_Hoxd4	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr4_+_19605451_19605451	0.04270413882997269	Msx2_Hoxd4	ENSMUST00000108250.3|Gm12353|ENSMUSG00000078772.3|predicted gene 12353
mm39_v1_chr1_+_128079543_128079572	0.04263235119915644	Msx2_Hoxd4	ENSMUST00000189317.3|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1
mm39_v1_chr17_+_17622934_17622970	0.042187276128251204	Msx2_Hoxd4	ENSMUST00000115576.3|Lix1|ENSMUSG00000047786.13|limb and CNS expressed 1
mm39_v1_chr2_-_63014622_63014681	0.03611627969838743	Msx2_Hoxd4	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr15_+_58004831_58004838	0.03133566049492204	Msx2_Hoxd4	ENSMUST00000226889.2|Wdyhv1|ENSMUSG00000022359.11|WDYHV motif containing 1
mm39_v1_chr17_-_90395771_90395828	0.028375814979404838	Msx2_Hoxd4	ENSMUST00000197268.5|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000173917.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr9_+_74883377_74883460	0.027982277238788107	Msx2_Hoxd4	ENSMUST00000081746.7|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr4_-_129015493_129015533	0.02760112419482198	Msx2_Hoxd4	ENSMUST00000135763.2|Hpca|ENSMUSG00000028785.14|hippocalcin	ENSMUST00000149763.3|Hpca|ENSMUSG00000028785.14|hippocalcin	ENSMUST00000164649.8|Hpca|ENSMUSG00000028785.14|hippocalcin
mm39_v1_chr6_+_89860642_89860642	0.02673236822169192	Msx2_Hoxd4	ENSMUST00000226345.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000204656.3|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227456.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227047.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000226120.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227888.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000228183.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44	ENSMUST00000227625.2|Vmn1r44|ENSMUSG00000068234.8|vomeronasal 1 receptor 44
mm39_v1_chr7_+_140064129_140064157	0.02671138205560962	Msx2_Hoxd4	ENSMUST00000214296.2|Olfr535|ENSMUSG00000063230.6|olfactory receptor 535	ENSMUST00000213715.3|Olfr535|ENSMUSG00000063230.6|olfactory receptor 535	ENSMUST00000217235.2|Olfr535|ENSMUSG00000063230.6|olfactory receptor 535
mm39_v1_chr2_-_59955995_59956119	0.024221209739976022	Msx2_Hoxd4	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr6_+_37847721_37847892	0.02088344849683105	Msx2_Hoxd4	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr3_+_20011201_20011237	0.02068300504677403	Msx2_Hoxd4	ENSMUST00000091309.12|Cp|ENSMUSG00000003617.17|ceruloplasmin	ENSMUST00000108329.8|Cp|ENSMUSG00000003617.17|ceruloplasmin	ENSMUST00000003714.13|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr18_+_34973605_34973646	0.01980322253594956	Msx2_Hoxd4	ENSMUST00000043484.8|Reep2|ENSMUSG00000038555.8|receptor accessory protein 2
mm39_v1_chr10_+_129601351_129601351	0.019771036039768652	Msx2_Hoxd4	ENSMUST00000203236.3|Olfr808|ENSMUSG00000049894.4|olfactory receptor 808
mm39_v1_chr7_-_115423934_115423987	0.019437687372007132	Msx2_Hoxd4	ENSMUST00000169129.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr12_-_113896002_113896052	0.019067236651929487	Msx2_Hoxd4	ENSMUST00000103463.3|Ighv14-1|ENSMUSG00000094509.2|immunoglobulin heavy variable 14-1
mm39_v1_chr1_-_14380418_14380463	0.018357953021039198	Msx2_Hoxd4	ENSMUST00000027066.13|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1	ENSMUST00000168081.9|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr18_+_9707595_9707637	0.01817516988367587	Msx2_Hoxd4	ENSMUST00000234965.2|Colec12|ENSMUSG00000036103.10|collectin sub-family member 12
mm39_v1_chr7_-_104250951_104250986	0.01742180562105327	Msx2_Hoxd4	ENSMUST00000216750.2|Olfr655|ENSMUSG00000051182.6|olfactory receptor 655	ENSMUST00000215538.2|Olfr655|ENSMUSG00000051182.6|olfactory receptor 655
mm39_v1_chr6_+_34722887_34722916	0.01603437228303967	Msx2_Hoxd4	ENSMUST00000123823.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000136907.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr2_+_76480606_76480627	0.014002207478028151	Msx2_Hoxd4	ENSMUST00000099986.3|Pjvk|ENSMUSG00000075267.10|pejvakin
mm39_v1_chr19_+_44980565_44980575	0.013543626151623283	Msx2_Hoxd4	ENSMUST00000179305.2|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr8_+_26648169_26648282	0.01253571497740606	Msx2_Hoxd4	ENSMUST00000036807.13|Thap1|ENSMUSG00000037214.13|THAP domain containing, apoptosis associated protein 1	ENSMUST00000130231.2|Thap1|ENSMUSG00000037214.13|THAP domain containing, apoptosis associated protein 1
mm39_v1_chr1_-_14380327_14380348	0.012525556190124002	Msx2_Hoxd4	ENSMUST00000080664.14|Eya1|ENSMUSG00000025932.15|EYA transcriptional coactivator and phosphatase 1
mm39_v1_chr1_-_156766351_156766379	0.01227666987650391	Msx2_Hoxd4	ENSMUST00000189648.2|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr10_+_128139191_128139221	0.012125914106290943	Msx2_Hoxd4	ENSMUST00000005825.8|Pan2|ENSMUSG00000005682.10|PAN2 poly(A) specific ribonuclease subunit
mm39_v1_chr15_+_6673167_6673187	0.012044671672335883	Msx2_Hoxd4	ENSMUST00000163073.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr10_+_101994841_101994940	0.011312777668700619	Msx2_Hoxd4	ENSMUST00000020039.13|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr6_+_83985684_83985749	0.0110317127227923	Msx2_Hoxd4	ENSMUST00000203803.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000204591.3|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000113823.8|Dysf|ENSMUSG00000033788.16|dysferlin	ENSMUST00000153860.4|Dysf|ENSMUSG00000033788.16|dysferlin
mm39_v1_chr11_-_66059330_66059359	0.010483071320743671	Msx2_Hoxd4	ENSMUST00000080665.10|Dnah9|ENSMUSG00000056752.17|dynein, axonemal, heavy chain 9
mm39_v1_chr14_-_56137697_56137717	0.009079986883387863	Msx2_Hoxd4	ENSMUST00000111325.5|Sdr39u1|ENSMUSG00000022223.10|short chain dehydrogenase/reductase family 39U, member 1
mm39_v1_chr6_-_39702381_39702413	0.008551680608514793	Msx2_Hoxd4	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr11_+_96183294_96183334	0.008318508643763645	Msx2_Hoxd4	ENSMUST00000173432.3|Hoxb6|ENSMUSG00000000690.6|homeobox B6
mm39_v1_chr5_-_72325482_72325542	0.00809795178071735	Msx2_Hoxd4	ENSMUST00000196241.2|Commd8|ENSMUSG00000029213.12|COMM domain containing 8	ENSMUST00000013693.11|Commd8|ENSMUSG00000029213.12|COMM domain containing 8
mm39_v1_chr19_-_13074935_13074935	0.007362680626093309	Msx2_Hoxd4	ENSMUST00000214561.3|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr10_-_109669053_109669082	0.006680095543471845	Msx2_Hoxd4	ENSMUST00000238286.2|Nav3|ENSMUSG00000020181.19|neuron navigator 3
mm39_v1_chr19_-_47680528_47680535	0.00548806489435379	Msx2_Hoxd4	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr2_-_63014514_63014539	0.005355731229036604	Msx2_Hoxd4	ENSMUST00000112452.2|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr2_-_164013033_164013033	0.004949648679954598	Msx2_Hoxd4	ENSMUST00000045196.4|Kcns1|ENSMUSG00000040164.4|K+ voltage-gated channel, subfamily S, 1
mm39_v1_chr13_+_76115824_76115907	0.004249803425048403	Msx2_Hoxd4	ENSMUST00000022081.3|Spata9|ENSMUSG00000021590.8|spermatogenesis associated 9
mm39_v1_chr15_-_3333003_3333044	0.0036534463088525675	Msx2_Hoxd4	ENSMUST00000165386.2|Ccdc152|ENSMUSG00000091119.3|coiled-coil domain containing 152
mm39_v1_chr5_-_121641461_121641503	0.0033795975550772635	Msx2_Hoxd4	ENSMUST00000079368.5|Adam1b|ENSMUSG00000062438.5|a disintegrin and metallopeptidase domain 1b
mm39_v1_chr4_-_119349760_119349825	0.003164732352920284	Msx2_Hoxd4	ENSMUST00000049994.8|Rimkla|ENSMUSG00000048899.9|ribosomal modification protein rimK-like family member A
mm39_v1_chr10_+_78353262_78353262	0.0028679306378252205	Msx2_Hoxd4	ENSMUST00000204477.5|Olfr1358|ENSMUSG00000107822.5|olfactory receptor 1358
mm39_v1_chr5_+_65505657_65505689	0.002803360658319025	Msx2_Hoxd4	ENSMUST00000031096.11|Klb|ENSMUSG00000029195.11|klotho beta
mm39_v1_chr1_-_37955569_37955576	0.0027948336337647664	Msx2_Hoxd4	ENSMUST00000078307.7|Lyg2|ENSMUSG00000061584.7|lysozyme G-like 2
mm39_v1_chr3_-_126918491_126918535	0.0022053182242405076	Msx2_Hoxd4	ENSMUST00000238781.2|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr15_-_13173736_13173791	0.0013422168350616622	Msx2_Hoxd4	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr19_-_12897671_12897671	0.0008699166646320924	Msx2_Hoxd4	ENSMUST00000054737.3|Olfr1448|ENSMUSG00000048456.4|olfactory receptor 1448
mm39_v1_chr4_-_144291704_144291771	0.0007439252603041785	Msx2_Hoxd4	ENSMUST00000105748.2|Aadacl4fm2|ENSMUSG00000078506.2|AADACL4 family member 2
