mm39_v1_chr13_+_23936250_23936338	0.8055158954620855	Nanog	ENSMUST00000091703.3|H3c2|ENSMUSG00000069267.3|H3 clustered histone 2
mm39_v1_chr13_-_23945189_23945224	0.3998130628431841	Nanog	ENSMUST00000102964.4|H4c1|ENSMUSG00000060093.7|H4 clustered histone 1
mm39_v1_chr5_+_107655487_107655487	0.35097586191810765	Nanog	ENSMUST00000143074.2|Gm42669|ENSMUSG00000106631.3|predicted gene 42669
mm39_v1_chr3_+_105778174_105778229	0.23504958646044125	Nanog	ENSMUST00000164730.2|Adora3|ENSMUSG00000000562.6|adenosine A3 receptor	ENSMUST00000010279.10|Tmigd3|ENSMUSG00000074344.8|transmembrane and immunoglobulin domain containing 3
mm39_v1_chr4_-_116565509_116565603	0.2314531862819386	Nanog	ENSMUST00000030453.5|Mmachc|ENSMUSG00000028690.5|methylmalonic aciduria cblC type, with homocystinuria
mm39_v1_chr7_-_12468931_12468931	0.22860004265387698	Nanog	ENSMUST00000233304.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233373.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233874.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233902.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56
mm39_v1_chr3_-_37366567_37366615	0.21989568956445343	Nanog	ENSMUST00000075537.7|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000071400.13|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000102955.11|Cetn4|ENSMUSG00000045031.19|centrin 4	ENSMUST00000140956.8|Cetn4|ENSMUSG00000045031.19|centrin 4
mm39_v1_chr11_-_109188917_109188944	0.21569255689301678	Nanog	ENSMUST00000106704.3|Rgs9|ENSMUSG00000020599.14|regulator of G-protein signaling 9
mm39_v1_chr7_-_25454177_25454197	0.20550394095959096	Nanog	ENSMUST00000206832.2|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1
mm39_v1_chr9_+_39932760_39932760	0.19622495567155443	Nanog	ENSMUST00000215956.3|Olfr981|ENSMUSG00000046678.7|olfactory receptor 981
mm39_v1_chr10_+_129153986_129153986	0.1922280975230455	Nanog	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr12_+_24701273_24701410	0.18328393870357038	Nanog	ENSMUST00000020982.7|Klf11|ENSMUSG00000020653.13|Kruppel-like factor 11
mm39_v1_chr15_-_71826243_71826273	0.18266301246908662	Nanog	ENSMUST00000229585.2|Col22a1|ENSMUSG00000079022.11|collagen, type XXII, alpha 1
mm39_v1_chr19_-_13126896_13126896	0.17661562363424094	Nanog	ENSMUST00000213493.2|Olfr1459|ENSMUSG00000057503.7|olfactory receptor 1459
mm39_v1_chr10_+_53213763_53213820	0.17529204391400047	Nanog	ENSMUST00000219491.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000163319.9|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000220197.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000046221.8|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000218468.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000219921.2|Pln|ENSMUSG00000038583.14|phospholamban
mm39_v1_chr6_-_116693849_116693885	0.16982340352558306	Nanog	ENSMUST00000056623.13|Tmem72|ENSMUSG00000048108.14|transmembrane protein 72
mm39_v1_chr7_+_100435548_100435582	0.16161687238771943	Nanog	ENSMUST00000216021.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr7_+_128290204_128290224	0.15749546485891658	Nanog	ENSMUST00000118605.2|Inpp5f|ENSMUSG00000042105.19|inositol polyphosphate-5-phosphatase F
mm39_v1_chr2_+_155078449_155078521	0.15722022222002274	Nanog	ENSMUST00000109682.9|Dynlrb1|ENSMUSG00000047459.15|dynein light chain roadblock-type 1
mm39_v1_chr5_-_116427003_116427076	0.15591767182588132	Nanog	ENSMUST00000086483.4|Ccdc60|ENSMUSG00000043913.15|coiled-coil domain containing 60	ENSMUST00000050178.13|Ccdc60|ENSMUSG00000043913.15|coiled-coil domain containing 60
mm39_v1_chr7_-_12342715_12342715	0.1543316729209051	Nanog	ENSMUST00000233892.2|Vmn2r53|ENSMUSG00000096002.3|vomeronasal 2, receptor 53
mm39_v1_chr10_+_129072073_129072073	0.15115630726697107	Nanog	ENSMUST00000203248.3|Olfr774|ENSMUSG00000096229.4|olfactory receptor 774
mm39_v1_chr7_-_25454126_25454176	0.15089891565370808	Nanog	ENSMUST00000108401.3|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1	ENSMUST00000043765.14|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1
mm39_v1_chr7_+_110368037_110368118	0.14967469411661102	Nanog	ENSMUST00000213373.2|Ampd3|ENSMUSG00000005686.18|adenosine monophosphate deaminase 3
mm39_v1_chr3_+_105811712_105811743	0.14816807117513855	Nanog	ENSMUST00000000574.3|Adora3|ENSMUSG00000000562.6|adenosine A3 receptor
mm39_v1_chr2_-_111820618_111820626	0.14625499282492713	Nanog	ENSMUST00000216948.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000214935.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000217452.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309	ENSMUST00000215045.2|Olfr1309|ENSMUSG00000109528.3|olfactory receptor 1309
mm39_v1_chr10_+_78864575_78864575	0.1416876765291911	Nanog	ENSMUST00000203906.3|Olfr57|ENSMUSG00000060205.4|olfactory receptor 57
mm39_v1_chr2_+_3514071_3514112	0.14117348634999416	Nanog	ENSMUST00000036350.3|Cdnf|ENSMUSG00000039496.9|cerebral dopamine neurotrophic factor
mm39_v1_chr15_-_50752437_50752481	0.13752551569439853	Nanog	ENSMUST00000183997.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000183757.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr4_+_107825529_107825621	0.13601506628472637	Nanog	ENSMUST00000106713.5|Slc1a7|ENSMUSG00000008932.11|solute carrier family 1 (glutamate transporter), member 7	ENSMUST00000238795.2|Slc1a7|ENSMUSG00000008932.11|solute carrier family 1 (glutamate transporter), member 7
mm39_v1_chr12_-_72455708_72455828	0.13070080151845698	Nanog	ENSMUST00000078505.14|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chr13_-_19917092_19917125	0.12857929362445725	Nanog	ENSMUST00000151029.3|Gpr141b|ENSMUSG00000047462.10|G protein-coupled receptor 141B
mm39_v1_chr12_+_44268134_44268153	0.12500211688835602	Nanog	ENSMUST00000122902.8|Pnpla8|ENSMUSG00000036257.16|patatin-like phospholipase domain containing 8
mm39_v1_chr2_+_134627987_134628090	0.12216129652261407	Nanog	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr12_-_115916604_115916625	0.12178295166636567	Nanog	ENSMUST00000196991.2|Ighv1-82|ENSMUSG00000095127.3|immunoglobulin heavy variable 1-82
mm39_v1_chr2_+_37078210_37078210	0.11982760708543619	Nanog	ENSMUST00000213969.2|Olfr365|ENSMUSG00000059429.4|olfactory receptor 365
mm39_v1_chrX_+_128650486_128650574	0.11858402230523027	Nanog	ENSMUST00000167619.9|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2	ENSMUST00000037854.15|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2
mm39_v1_chr7_-_141241632_141241647	0.11791111650382341	Nanog	ENSMUST00000239500.1|ENSMUSG00000118661.1|ENSMUSG00000118661.1|mucin 6, gastric
mm39_v1_chr7_-_98305737_98305808	0.11665037072423576	Nanog	ENSMUST00000205911.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000038359.6|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206611.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206619.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr7_+_24967094_24967148	0.11593804272666752	Nanog	ENSMUST00000169266.8|Cic|ENSMUSG00000005442.14|capicua transcriptional repressor
mm39_v1_chr2_-_45000389_45000766	0.11531667546202592	Nanog	ENSMUST00000201804.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000028229.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000202187.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000153561.6|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201490.2|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr17_-_59320257_59320367	0.11348136758550408	Nanog	ENSMUST00000174122.2|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12	ENSMUST00000025065.12|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm39_v1_chr18_+_39439778_39439807	0.11126140700948264	Nanog	ENSMUST00000235660.2|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr10_-_7162196_7162248	0.11088644660561858	Nanog	ENSMUST00000015346.12|Cnksr3|ENSMUSG00000015202.14|Cnksr family member 3
mm39_v1_chr11_+_68979308_68979319	0.1106316004978996	Nanog	ENSMUST00000021273.13|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr7_+_127845984_127846120	0.10988497777051431	Nanog	ENSMUST00000164710.8|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1	ENSMUST00000070656.12|Tgfb1i1|ENSMUSG00000030782.18|transforming growth factor beta 1 induced transcript 1
mm39_v1_chr8_-_84996976_84997035	0.10979734615637557	Nanog	ENSMUST00000005120.12|Ccdc130|ENSMUSG00000004994.13|coiled-coil domain containing 130	ENSMUST00000163993.2|Ccdc130|ENSMUSG00000004994.13|coiled-coil domain containing 130	ENSMUST00000098578.10|Ccdc130|ENSMUSG00000004994.13|coiled-coil domain containing 130
mm39_v1_chr11_+_68979332_68979380	0.10784359959259997	Nanog	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr5_+_135197228_135197357	0.1063483246687862	Nanog	ENSMUST00000111187.10|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B	ENSMUST00000111188.5|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B	ENSMUST00000202606.3|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B
mm39_v1_chr7_-_98305986_98306021	0.10609117093469624	Nanog	ENSMUST00000205276.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr5_-_104125226_104125249	0.10570716282116355	Nanog	ENSMUST00000048118.15|Hsd17b13|ENSMUSG00000034528.16|hydroxysteroid (17-beta) dehydrogenase 13
mm39_v1_chr2_-_86882616_86882617	0.10365518628730536	Nanog	ENSMUST00000213781.2|Olfr1106|ENSMUSG00000075164.3|olfactory receptor 1106	ENSMUST00000217650.2|Olfr1106|ENSMUSG00000075164.3|olfactory receptor 1106
mm39_v1_chr9_-_70410611_70410660	0.10353263890921352	Nanog	ENSMUST00000215848.2|Rnf111|ENSMUSG00000032217.14|ring finger 111	ENSMUST00000113595.2|Rnf111|ENSMUSG00000032217.14|ring finger 111	ENSMUST00000213647.2|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr19_-_12100560_12100567	0.10265266417736729	Nanog	ENSMUST00000213471.2|Olfr76|ENSMUSG00000067522.4|olfactory receptor 76	ENSMUST00000214676.2|Olfr76|ENSMUSG00000067522.4|olfactory receptor 76
mm39_v1_chr17_+_38456172_38456284	0.10146707799412673	Nanog	ENSMUST00000215078.3|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133	ENSMUST00000215549.3|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133	ENSMUST00000173610.2|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133
mm39_v1_chr4_+_125918333_125918348	0.10009266953886428	Nanog	ENSMUST00000106162.8|Csf3r|ENSMUSG00000028859.15|colony stimulating factor 3 receptor (granulocyte)
mm39_v1_chr4_+_150171822_150171999	0.0997317498323258	Nanog	ENSMUST00000094451.4|Gpr157|ENSMUSG00000047875.7|G protein-coupled receptor 157
mm39_v1_chr4_-_116001737_116001806	0.0989094872755571	Nanog	ENSMUST00000030469.5|Lurap1|ENSMUSG00000028701.5|leucine rich adaptor protein 1
mm39_v1_chr6_+_90179768_90179768	0.09678038014711106	Nanog	ENSMUST00000078371.6|V1ra8|ENSMUSG00000062546.6|vomeronasal 1 receptor, A8
mm39_v1_chr10_-_98962187_98962187	0.09560817252447154	Nanog	ENSMUST00000060761.7|Phxr2|ENSMUSG00000055108.7|per-hexamer repeat gene 2
mm39_v1_chr3_-_57599956_57599970	0.09551581502637047	Nanog	ENSMUST00000238789.2|Ankub1|ENSMUSG00000074591.9|ankrin repeat and ubiquitin domain containing 1	ENSMUST00000197088.5|Ankub1|ENSMUSG00000074591.9|ankrin repeat and ubiquitin domain containing 1	ENSMUST00000099091.4|Ankub1|ENSMUSG00000074591.9|ankrin repeat and ubiquitin domain containing 1
mm39_v1_chr16_+_3690232_3690248	0.09328929791661017	Nanog	ENSMUST00000151988.8|Naa60|ENSMUSG00000005982.15|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm39_v1_chr2_+_28950250_28950311	0.09314664153531313	Nanog	ENSMUST00000100237.4|Ttf1|ENSMUSG00000026803.18|transcription termination factor, RNA polymerase I
mm39_v1_chr14_-_78774201_78774292	0.08903530372723675	Nanog	ENSMUST00000123853.9|Akap11|ENSMUSG00000022016.18|A kinase (PRKA) anchor protein 11
mm39_v1_chrX_+_13527592_13527605	0.08756349130996803	Nanog	ENSMUST00000053659.2|Gpr82|ENSMUSG00000047678.2|G protein-coupled receptor 82
mm39_v1_chr9_+_106245792_106245839	0.08748558204578294	Nanog	ENSMUST00000172306.3|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr3_+_103767581_103767609	0.08584703120049922	Nanog	ENSMUST00000029433.9|Ptpn22|ENSMUSG00000027843.14|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)
mm39_v1_chr1_+_153750081_153750100	0.08468863860719981	Nanog	ENSMUST00000055314.4|Teddm1b|ENSMUSG00000043282.4|transmembrane epididymal protein 1B
mm39_v1_chr17_+_36152383_36152407	0.08201084756688257	Nanog	ENSMUST00000082337.13|Mdc1|ENSMUSG00000061607.16|mediator of DNA damage checkpoint 1
mm39_v1_chr15_-_58828321_58828364	0.0819002938138025	Nanog	ENSMUST00000228067.2|Mtss1|ENSMUSG00000022353.11|MTSS I-BAR domain containing 1
mm39_v1_chr2_-_166904625_166904644	0.08015694269534523	Nanog	ENSMUST00000128676.2|Znfx1|ENSMUSG00000039501.15|zinc finger, NFX1-type containing 1
mm39_v1_chr8_-_84321032_84321061	0.07993741148382733	Nanog	ENSMUST00000163837.2|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase
mm39_v1_chr10_+_110581293_110581433	0.07990257438691233	Nanog	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr18_-_35348049_35348092	0.07739645191001751	Nanog	ENSMUST00000091636.5|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2	ENSMUST00000236680.2|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2
mm39_v1_chr17_-_37523969_37524009	0.07704639555079366	Nanog	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr2_+_155078522_155078539	0.07626049835725726	Nanog	ENSMUST00000150602.2|Dynlrb1|ENSMUSG00000047459.15|dynein light chain roadblock-type 1
mm39_v1_chr7_-_30259025_30259084	0.07589022639345175	Nanog	ENSMUST00000043975.11|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)	ENSMUST00000156241.2|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)
mm39_v1_chr3_-_144466602_144466628	0.07556595874210582	Nanog	ENSMUST00000059091.6|Clca3a1|ENSMUSG00000056025.13|chloride channel accessory 3A1
mm39_v1_chr7_+_23330147_23330147	0.07474048022631478	Nanog	ENSMUST00000227774.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226771.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228681.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228559.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228674.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000227866.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000227386.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228484.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226321.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226128.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000226733.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171	ENSMUST00000228228.2|Vmn1r171|ENSMUSG00000062483.5|vomeronasal 1 receptor 171
mm39_v1_chr5_+_135197137_135197227	0.07448452172309168	Nanog	ENSMUST00000031692.12|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B
mm39_v1_chr12_+_108145802_108145842	0.07309335120794808	Nanog	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr19_+_13208692_13208692	0.07210807487263025	Nanog	ENSMUST00000207246.4|Olfr1463|ENSMUSG00000096365.5|olfactory receptor 1463
mm39_v1_chr6_-_136899167_136899196	0.0709411890154785	Nanog	ENSMUST00000032343.7|Erp27|ENSMUSG00000030219.14|endoplasmic reticulum protein 27
mm39_v1_chr14_+_51333816_51333864	0.07043435321034955	Nanog	ENSMUST00000169895.3|Rnase4|ENSMUSG00000021876.16|ribonuclease, RNase A family 4
mm39_v1_chr5_-_108017019_108017041	0.07031529539375227	Nanog	ENSMUST00000128723.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000124034.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr2_+_32253692_32253822	0.0685146494434113	Nanog	ENSMUST00000113331.8|Ciz1|ENSMUSG00000039205.17|CDKN1A interacting zinc finger protein 1	ENSMUST00000113338.9|Ciz1|ENSMUSG00000039205.17|CDKN1A interacting zinc finger protein 1
mm39_v1_chr8_+_106024294_106024367	0.06697598263445628	Nanog	ENSMUST00000015003.10|E2f4|ENSMUSG00000014859.10|E2F transcription factor 4
mm39_v1_chr6_+_116627635_116627657	0.066794818902047	Nanog	ENSMUST00000204555.2|Depp1|ENSMUSG00000048489.13|DEPP1 autophagy regulator
mm39_v1_chrX_+_56008685_56008685	0.06579108097846306	Nanog	ENSMUST00000096431.10|Adgrg4|ENSMUSG00000053852.12|adhesion G protein-coupled receptor G4
mm39_v1_chrX_+_7688528_7688528	0.06529849853667649	Nanog	ENSMUST00000009875.5|Kcnd1|ENSMUSG00000009731.5|potassium voltage-gated channel, Shal-related family, member 1
mm39_v1_chr1_-_92107971_92108063	0.06423380835495766	Nanog	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr7_+_79309938_79309949	0.06400193021941136	Nanog	ENSMUST00000035977.9|Ticrr|ENSMUSG00000046591.11|TOPBP1-interacting checkpoint and replication regulator
mm39_v1_chr9_-_15268958_15269084	0.06374773041164715	Nanog	ENSMUST00000161132.9|Cep295|ENSMUSG00000046111.18|centrosomal protein 295	ENSMUST00000098979.11|Cep295|ENSMUSG00000046111.18|centrosomal protein 295
mm39_v1_chr7_-_30259253_30259267	0.0634683220211569	Nanog	ENSMUST00000108164.8|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)
mm39_v1_chr11_+_70453806_70453896	0.06226956707297946	Nanog	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr10_+_121477699_121477777	0.06221461772795763	Nanog	ENSMUST00000120642.9|D930020B18Rik|ENSMUSG00000047642.16|RIKEN cDNA D930020B18 gene	ENSMUST00000132744.2|D930020B18Rik|ENSMUSG00000047642.16|RIKEN cDNA D930020B18 gene
mm39_v1_chr17_+_30940015_30940015	0.06177130268570982	Nanog	ENSMUST00000236948.2|Dnah8|ENSMUSG00000033826.11|dynein, axonemal, heavy chain 8
mm39_v1_chr16_+_10652910_10652948	0.05991498967259287	Nanog	ENSMUST00000037913.9|Rmi2|ENSMUSG00000037991.10|RecQ mediated genome instability 2
mm39_v1_chr2_-_153079828_153079854	0.05899193515849364	Nanog	ENSMUST00000109795.2|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr9_-_107512511_107512552	0.05889492226230974	Nanog	ENSMUST00000192615.6|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2	ENSMUST00000192837.2|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2	ENSMUST00000193876.2|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr5_-_124387812_124387845	0.05864854773948787	Nanog	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr7_+_28580847_28580847	0.05849257569918949	Nanog	ENSMUST00000066880.6|Capn12|ENSMUSG00000054083.9|calpain 12
mm39_v1_chr9_-_107512566_107512584	0.058198973195271245	Nanog	ENSMUST00000055704.12|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr7_+_126184108_126184127	0.05792592588110703	Nanog	ENSMUST00000039522.8|Apobr|ENSMUSG00000042759.13|apolipoprotein B receptor
mm39_v1_chr15_+_102898966_102899039	0.05712322623212798	Nanog	ENSMUST00000001703.8|Hoxc8|ENSMUSG00000001657.8|homeobox C8
mm39_v1_chr8_-_84321069_84321113	0.05698975171522113	Nanog	ENSMUST00000019382.17|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase	ENSMUST00000212630.2|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase	ENSMUST00000165740.9|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase
mm39_v1_chr2_+_18069375_18069516	0.05656659592324554	Nanog	ENSMUST00000114671.8|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	ENSMUST00000114680.9|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
mm39_v1_chr16_+_18630522_18630582	0.05619537942585482	Nanog	ENSMUST00000115578.10|Ufd1|ENSMUSG00000005262.14|ubiquitin recognition factor in ER-associated degradation 1
mm39_v1_chr11_+_95603494_95603529	0.05596119139911369	Nanog	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr11_+_66802807_66802829	0.055472131221604	Nanog	ENSMUST00000123434.3|Pirt|ENSMUSG00000048070.5|phosphoinositide-interacting regulator of transient receptor potential channels
mm39_v1_chr11_-_114825089_114825224	0.05483186904252984	Nanog	ENSMUST00000149663.4|Cd300lb|ENSMUSG00000063193.10|CD300 molecule like family member B	ENSMUST00000239005.2|Cd300lb|ENSMUSG00000063193.10|CD300 molecule like family member B	ENSMUST00000106581.5|Cd300lb|ENSMUSG00000063193.10|CD300 molecule like family member B
mm39_v1_chrX_+_8137881_8138029	0.05446649118243539	Nanog	ENSMUST00000115590.2|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5
mm39_v1_chrX_+_158623460_158623477	0.0544203712678917	Nanog	ENSMUST00000112451.8|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1	ENSMUST00000112453.9|Sh3kbp1|ENSMUSG00000040990.18|SH3-domain kinase binding protein 1
mm39_v1_chrX_+_101163053_101163096	0.05360541869913075	Nanog	ENSMUST00000113627.4|Pin4|ENSMUSG00000079480.4|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm39_v1_chr4_+_136038301_136038365	0.05225431197933235	Nanog	ENSMUST00000084219.12|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr16_-_20245071_20245136	0.051495657863880336	Nanog	ENSMUST00000115547.9|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5	ENSMUST00000096199.5|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr9_+_107456086_107456086	0.05147987894991412	Nanog	ENSMUST00000149638.8|Naa80|ENSMUSG00000079334.9|N(alpha)-acetyltransferase 80, NatH catalytic subunit	ENSMUST00000139274.8|Naa80|ENSMUSG00000079334.9|N(alpha)-acetyltransferase 80, NatH catalytic subunit	ENSMUST00000130053.8|Naa80|ENSMUSG00000079334.9|N(alpha)-acetyltransferase 80, NatH catalytic subunit	ENSMUST00000122985.8|Naa80|ENSMUSG00000079334.9|N(alpha)-acetyltransferase 80, NatH catalytic subunit	ENSMUST00000127380.8|Naa80|ENSMUSG00000079334.9|N(alpha)-acetyltransferase 80, NatH catalytic subunit	ENSMUST00000139581.2|Naa80|ENSMUSG00000079334.9|N(alpha)-acetyltransferase 80, NatH catalytic subunit
mm39_v1_chr3_+_79791798_79791904	0.05050745846253417	Nanog	ENSMUST00000118853.8|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B	ENSMUST00000145992.2|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B
mm39_v1_chr17_+_41121979_41122056	0.049432115156804644	Nanog	ENSMUST00000024721.8|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein	ENSMUST00000233740.2|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein
mm39_v1_chr16_-_20245138_20245149	0.04854320061771144	Nanog	ENSMUST00000079158.13|Abcc5|ENSMUSG00000022822.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm39_v1_chr19_-_9876815_9876915	0.04811727448969777	Nanog	ENSMUST00000237147.2|Incenp|ENSMUSG00000024660.10|inner centromere protein	ENSMUST00000025562.9|Incenp|ENSMUSG00000024660.10|inner centromere protein
mm39_v1_chr9_-_70564403_70564470	0.047794655986165044	Nanog	ENSMUST00000213380.2|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2	ENSMUST00000049031.6|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2
mm39_v1_chr19_-_56810593_56810654	0.047585075827608035	Nanog	ENSMUST00000118592.8|Ccdc186|ENSMUSG00000035173.15|coiled-coil domain containing 186
mm39_v1_chr2_-_45001141_45001186	0.04752540634271893	Nanog	ENSMUST00000201969.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201623.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_+_136038263_136038296	0.04707703467026772	Nanog	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr5_-_36641456_36641650	0.046809795961657574	Nanog	ENSMUST00000119916.2|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B	ENSMUST00000031097.8|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B
mm39_v1_chr19_+_6096606_6096692	0.046545377600007334	Nanog	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr2_+_115412148_115412225	0.046341897909302585	Nanog	ENSMUST00000166472.8|Cdin1|ENSMUSG00000040282.14|CDAN1 interacting nuclease 1	ENSMUST00000110918.3|Cdin1|ENSMUSG00000040282.14|CDAN1 interacting nuclease 1
mm39_v1_chr17_-_37472385_37472385	0.04545152428460107	Nanog	ENSMUST00000219235.3|Olfr93|ENSMUSG00000091601.6|olfactory receptor 93
mm39_v1_chr10_-_25076008_25076076	0.04532176118963584	Nanog	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr17_-_57554631_57554694	0.045183564545606694	Nanog	ENSMUST00000233568.2|Gpr108|ENSMUSG00000005823.10|G protein-coupled receptor 108	ENSMUST00000005975.8|Gpr108|ENSMUSG00000005823.10|G protein-coupled receptor 108
mm39_v1_chr1_-_171910324_171910362	0.045180742999392856	Nanog	ENSMUST00000003550.11|Ncstn|ENSMUSG00000003458.13|nicastrin
mm39_v1_chr10_-_95678748_95678758	0.04417949591174008	Nanog	ENSMUST00000210336.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr11_-_23845207_23845280	0.04400441439416807	Nanog	ENSMUST00000102863.3|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma	ENSMUST00000020513.10|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma
mm39_v1_chr2_-_45002902_45003021	0.04393029328306652	Nanog	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_+_19818718_19818733	0.04355872320531938	Nanog	ENSMUST00000035890.8|Slc7a13|ENSMUSG00000041052.9|solute carrier family 7, (cationic amino acid transporter, y+ system) member 13
mm39_v1_chr1_+_155911136_155911177	0.04312578370356241	Nanog	ENSMUST00000111757.10|Tor1aip2|ENSMUSG00000050565.17|torsin A interacting protein 2
mm39_v1_chr10_-_95678786_95678808	0.041707860008424136	Nanog	ENSMUST00000211096.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr11_-_99134885_99134964	0.04165283725156034	Nanog	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr6_+_8259288_8259312	0.040880888249735556	Nanog	ENSMUST00000159335.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr7_-_26895141_26895192	0.04061659473735669	Nanog	ENSMUST00000163311.9|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A	ENSMUST00000126211.2|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A
mm39_v1_chr2_-_63928339_63928367	0.040248416830528086	Nanog	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr15_-_82872073_82872091	0.04008973550760797	Nanog	ENSMUST00000229439.2|Tcf20|ENSMUSG00000041852.16|transcription factor 20
mm39_v1_chr14_-_20714634_20714658	0.03980934705122898	Nanog	ENSMUST00000119483.2|Synpo2l|ENSMUSG00000039376.14|synaptopodin 2-like
mm39_v1_chr2_+_172994841_172994873	0.039430077484663484	Nanog	ENSMUST00000029017.6|Pck1|ENSMUSG00000027513.12|phosphoenolpyruvate carboxykinase 1, cytosolic
mm39_v1_chr4_-_43710231_43710255	0.03927878915243683	Nanog	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr11_+_58549846_58549846	0.038326852294945805	Nanog	ENSMUST00000213232.2|Olfr322|ENSMUSG00000063549.5|olfactory receptor 322
mm39_v1_chr4_-_46650157_46650234	0.03734499409845134	Nanog	ENSMUST00000084621.12|Tbc1d2|ENSMUSG00000039813.15|TBC1 domain family, member 2	ENSMUST00000107750.2|Tbc1d2|ENSMUSG00000039813.15|TBC1 domain family, member 2
mm39_v1_chr16_-_3690243_3690275	0.03696348934323911	Nanog	ENSMUST00000090522.5|Zfp597|ENSMUSG00000039789.8|zinc finger protein 597
mm39_v1_chr7_-_102566717_102566743	0.03684765274969372	Nanog	ENSMUST00000214160.2|Olfr571|ENSMUSG00000043310.5|olfactory receptor 571	ENSMUST00000215773.2|Olfr571|ENSMUSG00000043310.5|olfactory receptor 571
mm39_v1_chr6_+_125529911_125529943	0.036346950705924815	Nanog	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr7_-_102368277_102368277	0.03590370044166153	Nanog	ENSMUST00000216312.2|Olfr33|ENSMUSG00000066273.7|olfactory receptor 33
mm39_v1_chr11_+_70861007_70861039	0.03441970292458812	Nanog	ENSMUST00000018593.10|Rpain|ENSMUSG00000018449.13|RPA interacting protein
mm39_v1_chr4_+_136038243_136038258	0.034415323614401826	Nanog	ENSMUST00000131671.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr2_-_166904902_166904967	0.03436505839729531	Nanog	ENSMUST00000048988.14|Znfx1|ENSMUSG00000039501.15|zinc finger, NFX1-type containing 1
mm39_v1_chr12_+_102094977_102094997	0.03433788266140899	Nanog	ENSMUST00000159329.8|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr3_+_60503051_60503132	0.03419740701275808	Nanog	ENSMUST00000192757.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000193518.6|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1	ENSMUST00000195817.3|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr13_+_118851214_118851238	0.03408960196837151	Nanog	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr7_-_126183716_126183781	0.032938003193842845	Nanog	ENSMUST00000150311.8|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm39_v1_chr4_+_43058938_43058969	0.03277012355859358	Nanog	ENSMUST00000207569.2|Unc13b|ENSMUSG00000028456.19|unc-13 homolog B	ENSMUST00000079978.13|Unc13b|ENSMUSG00000028456.19|unc-13 homolog B
mm39_v1_chr3_+_122039206_122039227	0.032616646712775886	Nanog	ENSMUST00000029769.14|Gclm|ENSMUSG00000028124.16|glutamate-cysteine ligase, modifier subunit
mm39_v1_chr11_+_62711295_62711315	0.032230868923963846	Nanog	ENSMUST00000108703.2|Trim16|ENSMUSG00000047821.17|tripartite motif-containing 16
mm39_v1_chr15_+_44320918_44320949	0.03143721191589655	Nanog	ENSMUST00000038336.12|Pkhd1l1|ENSMUSG00000038725.14|polycystic kidney and hepatic disease 1-like 1	ENSMUST00000166957.2|Pkhd1l1|ENSMUSG00000038725.14|polycystic kidney and hepatic disease 1-like 1	ENSMUST00000209244.2|Pkhd1l1|ENSMUSG00000038725.14|polycystic kidney and hepatic disease 1-like 1
mm39_v1_chr5_-_100521343_100521393	0.03104906568866757	Nanog	ENSMUST00000182433.8|Sec31a|ENSMUSG00000035325.17|Sec31 homolog A (S. cerevisiae)
mm39_v1_chr9_+_21914083_21914114	0.031043088522322824	Nanog	ENSMUST00000216344.2|Prkcsh|ENSMUSG00000003402.15|protein kinase C substrate 80K-H
mm39_v1_chr13_+_12580772_12580795	0.03078122717327298	Nanog	ENSMUST00000220811.2|Ero1b|ENSMUSG00000057069.8|endoplasmic reticulum oxidoreductase 1 beta
mm39_v1_chrX_+_47197789_47197841	0.03036947198316429	Nanog	ENSMUST00000114998.8|Xpnpep2|ENSMUSG00000037005.17|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	ENSMUST00000115000.4|Xpnpep2|ENSMUSG00000037005.17|X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound
mm39_v1_chr10_+_129094996_129094996	0.0301687296000071	Nanog	ENSMUST00000213512.2|Olfr776|ENSMUSG00000095483.3|olfactory receptor 776
mm39_v1_chr19_-_8382424_8382475	0.02783330071756171	Nanog	ENSMUST00000064507.12|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30	ENSMUST00000120540.2|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30	ENSMUST00000096269.11|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30
mm39_v1_chr14_-_96756503_96756538	0.027814568188649278	Nanog	ENSMUST00000022666.9|Klhl1|ENSMUSG00000022076.11|kelch-like 1
mm39_v1_chr8_-_37200051_37200208	0.027493653372684293	Nanog	ENSMUST00000098826.10|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr19_-_7183626_7183681	0.027223117933126335	Nanog	ENSMUST00000025679.11|Otub1|ENSMUSG00000024767.12|OTU domain, ubiquitin aldehyde binding 1
mm39_v1_chr16_-_45544960_45544982	0.026861056631148284	Nanog	ENSMUST00000096057.5|Tagln3|ENSMUSG00000022658.11|transgelin 3
mm39_v1_chr19_-_7183596_7183607	0.026844051036812887	Nanog	ENSMUST00000123594.8|Otub1|ENSMUSG00000024767.12|OTU domain, ubiquitin aldehyde binding 1
mm39_v1_chr18_+_36431732_36431732	0.026587954194597863	Nanog	ENSMUST00000210490.3|Igip|ENSMUSG00000110185.3|IgA inducing protein
mm39_v1_chr19_+_7534816_7534830	0.02621965714557348	Nanog	ENSMUST00000136465.8|Plaat3|ENSMUSG00000060675.14|phospholipase A and acyltransferase 3	ENSMUST00000025925.11|Plaat3|ENSMUSG00000060675.14|phospholipase A and acyltransferase 3
mm39_v1_chr11_-_101062111_101062186	0.025985608119679458	Nanog	ENSMUST00000164474.8|Plekhh3|ENSMUSG00000035172.16|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	ENSMUST00000043397.14|Plekhh3|ENSMUSG00000035172.16|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm39_v1_chr9_-_66421868_66421891	0.02557186340085466	Nanog	ENSMUST00000056890.10|Fbxl22|ENSMUSG00000050503.10|F-box and leucine-rich repeat protein 22
mm39_v1_chr7_+_63937413_63937424	0.025051924447377485	Nanog	ENSMUST00000032736.11|Mtmr10|ENSMUSG00000030522.15|myotubularin related protein 10
mm39_v1_chr13_-_89890363_89890453	0.024454933207924044	Nanog	ENSMUST00000109543.9|Vcan|ENSMUSG00000021614.17|versican	ENSMUST00000159337.8|Vcan|ENSMUSG00000021614.17|versican	ENSMUST00000159910.8|Vcan|ENSMUSG00000021614.17|versican	ENSMUST00000109544.9|Vcan|ENSMUSG00000021614.17|versican
mm39_v1_chr7_-_42962487_42962540	0.024411213220916123	Nanog	ENSMUST00000135130.2|Zfp715|ENSMUSG00000012640.17|zinc finger protein 715	ENSMUST00000139061.2|Zfp715|ENSMUSG00000012640.17|zinc finger protein 715
mm39_v1_chr11_-_121410152_121410167	0.02388090590471901	Nanog	ENSMUST00000092298.6|Zfp750|ENSMUSG00000039238.7|zinc finger protein 750
mm39_v1_chr2_+_29236815_29236854	0.023520780504709415	Nanog	ENSMUST00000028139.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27	ENSMUST00000113830.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27
mm39_v1_chr16_+_13176238_13176334	0.023427640014897055	Nanog	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr19_+_29499671_29499682	0.02314898411923016	Nanog	ENSMUST00000043610.13|Ric1|ENSMUSG00000038658.16|RAB6A GEF complex partner 1
mm39_v1_chr13_-_3943556_3943589	0.022855130458520806	Nanog	ENSMUST00000099946.6|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr11_+_58549642_58549642	0.0227867828773294	Nanog	ENSMUST00000214392.2|Olfr322|ENSMUSG00000063549.5|olfactory receptor 322
mm39_v1_chr1_-_182109773_182109810	0.02155076287330306	Nanog	ENSMUST00000133052.2|Degs1|ENSMUSG00000038633.6|delta(4)-desaturase, sphingolipid 1
mm39_v1_chr7_-_28092113_28092133	0.021339466702744926	Nanog	ENSMUST00000003536.9|Med29|ENSMUSG00000003444.9|mediator complex subunit 29
mm39_v1_chr3_-_80710097_80710147	0.02050494578920767	Nanog	ENSMUST00000075316.10|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)	ENSMUST00000107745.8|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm39_v1_chr6_-_102441628_102441628	0.020289658533532498	Nanog	ENSMUST00000032159.7|Cntn3|ENSMUSG00000030075.11|contactin 3
mm39_v1_chr1_+_46464625_46464752	0.020038773989049484	Nanog	ENSMUST00000189749.7|Dnah7c|ENSMUSG00000101337.7|dynein, axonemal, heavy chain 7C
mm39_v1_chr18_+_82572595_82572705	0.019581264322129883	Nanog	ENSMUST00000152071.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000142850.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000080658.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000133193.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000123251.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000153478.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000075372.13|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000102812.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000062446.15|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000114674.11|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000132369.3|Mbp|ENSMUSG00000041607.18|myelin basic protein
mm39_v1_chr11_-_40624200_40624269	0.019517462335041754	Nanog	ENSMUST00000020579.9|Hmmr|ENSMUSG00000020330.17|hyaluronan mediated motility receptor (RHAMM)
mm39_v1_chr7_-_85974838_85974838	0.01887894674954452	Nanog	ENSMUST00000214977.2|Olfr308|ENSMUSG00000054498.7|olfactory receptor 308
mm39_v1_chr3_+_103740056_103740156	0.0188655248857949	Nanog	ENSMUST00000106822.2|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr12_+_37930169_37930179	0.018811897741460776	Nanog	ENSMUST00000221176.2|Dgkb|ENSMUSG00000036095.12|diacylglycerol kinase, beta
mm39_v1_chr3_-_152373997_152373997	0.018489287862159216	Nanog	ENSMUST00000045262.11|Ak5|ENSMUSG00000039058.12|adenylate kinase 5
mm39_v1_chr13_-_3943433_3943553	0.017953850301709637	Nanog	ENSMUST00000222504.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr15_-_103160082_103160127	0.01688460081252856	Nanog	ENSMUST00000149111.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2	ENSMUST00000132836.8|Nfe2|ENSMUSG00000058794.13|nuclear factor, erythroid derived 2
mm39_v1_chr16_+_13489845_13489893	0.01686706539483692	Nanog	ENSMUST00000069281.8|Bfar|ENSMUSG00000022684.16|bifunctional apoptosis regulator	ENSMUST00000035426.7|3110001I22Rik|ENSMUSG00000079737.5|RIKEN cDNA 3110001I22 gene
mm39_v1_chr2_+_130418091_130418096	0.016770910107248255	Nanog	ENSMUST00000028764.6|Oxt|ENSMUSG00000027301.8|oxytocin
mm39_v1_chr1_-_132318039_132318105	0.016482991482416772	Nanog	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr5_+_36641922_36641964	0.016373372388331798	Nanog	ENSMUST00000060100.3|Ccdc96|ENSMUSG00000050677.3|coiled-coil domain containing 96
mm39_v1_chr9_-_44216892_44216986	0.016024690251480886	Nanog	ENSMUST00000034629.6|Hinfp|ENSMUSG00000032119.6|histone H4 transcription factor	ENSMUST00000214660.2|Hinfp|ENSMUSG00000032119.6|histone H4 transcription factor	ENSMUST00000216508.2|Hinfp|ENSMUSG00000032119.6|histone H4 transcription factor
mm39_v1_chr18_-_78166539_78166553	0.015884131289498275	Nanog	ENSMUST00000160292.8|Slc14a1|ENSMUSG00000059336.15|solute carrier family 14 (urea transporter), member 1
mm39_v1_chr16_+_11223512_11223577	0.015397891441935983	Nanog	ENSMUST00000096273.9|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr3_+_130411097_130411232	0.012967519568544923	Nanog	ENSMUST00000166187.8|Etnppl|ENSMUSG00000019232.15|ethanolamine phosphate phospholyase	ENSMUST00000072271.13|Etnppl|ENSMUSG00000019232.15|ethanolamine phosphate phospholyase
mm39_v1_chr17_+_36152559_36152576	0.012921581816492202	Nanog	ENSMUST00000174124.2|Mdc1|ENSMUSG00000061607.16|mediator of DNA damage checkpoint 1
mm39_v1_chr17_-_43854530_43854530	0.01281689232227445	Nanog	ENSMUST00000178772.3|Ankrd66|ENSMUSG00000096140.3|ankyrin repeat domain 66
mm39_v1_chr14_-_52733146_52733206	0.012568380003609637	Nanog	ENSMUST00000206931.2|Olfr1507|ENSMUSG00000059887.8|olfactory receptor 1507	ENSMUST00000206062.4|Olfr1507|ENSMUSG00000059887.8|olfactory receptor 1507
mm39_v1_chr7_+_106692427_106692427	0.012498620150371882	Nanog	ENSMUST00000210568.4|Olfr17|ENSMUSG00000073897.6|olfactory receptor 17
mm39_v1_chr7_-_6733411_6733429	0.012105050619438534	Nanog	ENSMUST00000239104.2|Peg3|ENSMUSG00000002265.18|paternally expressed 3	ENSMUST00000051209.11|Peg3|ENSMUSG00000002265.18|paternally expressed 3
mm39_v1_chr2_+_162785394_162785437	0.012078912025157394	Nanog	ENSMUST00000035751.12|L3mbtl1|ENSMUSG00000035576.14|L3MBTL1 histone methyl-lysine binding protein	ENSMUST00000156954.8|L3mbtl1|ENSMUSG00000035576.14|L3MBTL1 histone methyl-lysine binding protein
mm39_v1_chr6_+_79995860_79995929	0.012015123269197162	Nanog	ENSMUST00000147663.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000128718.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000126005.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000133918.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4
mm39_v1_chr8_+_105996469_105996506	0.011749580068506007	Nanog	ENSMUST00000172525.8|Hsf4|ENSMUSG00000033249.11|heat shock transcription factor 4	ENSMUST00000174837.8|Hsf4|ENSMUSG00000033249.11|heat shock transcription factor 4	ENSMUST00000173859.2|Hsf4|ENSMUSG00000033249.11|heat shock transcription factor 4
mm39_v1_chr2_-_164670452_164670457	0.011628583514767378	Nanog	ENSMUST00000017911.4|Spata25|ENSMUSG00000017767.4|spermatogenesis associated 25
mm39_v1_chr5_+_30869193_30869259	0.011376383832851633	Nanog	ENSMUST00000088081.11|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5	ENSMUST00000101442.4|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr16_+_56298228_56298263	0.011201865156369176	Nanog	ENSMUST00000231832.2|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000096013.11|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000048471.15|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000231870.2|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000171000.3|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000231781.2|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000096012.11|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein
mm39_v1_chr6_-_30304512_30304569	0.010655912159770072	Nanog	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr8_+_85142413_85142466	0.010474422337437232	Nanog	ENSMUST00000215756.2|Cacna1a|ENSMUSG00000034656.19|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm39_v1_chr2_-_31700592_31700592	0.010420029796180029	Nanog	ENSMUST00000057407.3|Qrfp|ENSMUSG00000043102.3|pyroglutamylated RFamide peptide
mm39_v1_chr3_-_57209357_57209440	0.010219102423096071	Nanog	ENSMUST00000196979.5|Tm4sf1|ENSMUSG00000027800.15|transmembrane 4 superfamily member 1	ENSMUST00000029376.13|Tm4sf1|ENSMUSG00000027800.15|transmembrane 4 superfamily member 1
mm39_v1_chr7_+_6733684_6733740	0.010144737592311211	Nanog	ENSMUST00000197117.5|Usp29|ENSMUSG00000051527.12|ubiquitin specific peptidase 29
mm39_v1_chr13_+_119625345_119625396	0.010069721455113536	Nanog	ENSMUST00000099147.5|Tmem267|ENSMUSG00000074634.13|transmembrane protein 267
mm39_v1_chr4_+_109200225_109200278	0.009971419897441177	Nanog	ENSMUST00000030281.12|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr11_+_49346170_49346170	0.00969776710513426	Nanog	ENSMUST00000214541.2|Olfr1387|ENSMUSG00000063386.3|olfactory receptor 1387
mm39_v1_chr7_-_45343785_45343835	0.008692996795136585	Nanog	ENSMUST00000040636.9|Sec1|ENSMUSG00000040364.9|secretory blood group 1
mm39_v1_chr5_+_118165808_118165869	0.008514005394086874	Nanog	ENSMUST00000031304.14|Tesc|ENSMUSG00000029359.14|tescalcin
mm39_v1_chr11_+_43046476_43046545	0.008151930994657915	Nanog	ENSMUST00000238415.2|Atp10b|ENSMUSG00000055415.9|ATPase, class V, type 10B
mm39_v1_chr5_-_124325213_124325266	0.008134495524290396	Nanog	ENSMUST00000161938.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr10_+_62088104_62088217	0.008084287031418632	Nanog	ENSMUST00000020278.6|Tacr2|ENSMUSG00000020081.6|tachykinin receptor 2
mm39_v1_chr16_-_9812787_9812876	0.0080794799102738	Nanog	ENSMUST00000199708.5|Grin2a|ENSMUSG00000059003.13|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm39_v1_chr11_+_70861292_70861343	0.008068330838050456	Nanog	ENSMUST00000178822.8|Rpain|ENSMUSG00000018449.13|RPA interacting protein	ENSMUST00000108529.10|Rpain|ENSMUSG00000018449.13|RPA interacting protein	ENSMUST00000169965.8|Rpain|ENSMUSG00000018449.13|RPA interacting protein	ENSMUST00000167509.2|Rpain|ENSMUSG00000018449.13|RPA interacting protein
mm39_v1_chr11_+_62711057_62711281	0.008006234954622394	Nanog	ENSMUST00000055006.12|Trim16|ENSMUSG00000047821.17|tripartite motif-containing 16	ENSMUST00000072639.10|Trim16|ENSMUSG00000047821.17|tripartite motif-containing 16
mm39_v1_chr6_+_79995994_79996031	0.007889024565582705	Nanog	ENSMUST00000126399.2|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000136421.2|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4
mm39_v1_chr7_-_141015240_141015310	0.007771522608815016	Nanog	ENSMUST00000138865.8|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr4_+_133280680_133280702	0.007618383856891331	Nanog	ENSMUST00000042706.3|Nr0b2|ENSMUSG00000037583.3|nuclear receptor subfamily 0, group B, member 2
mm39_v1_chr4_-_49597425_49597490	0.007242747186269091	Nanog	ENSMUST00000150664.2|Pgap4|ENSMUSG00000039611.3|post-GPI attachment to proteins GalNAc transferase 4
mm39_v1_chr13_+_21295653_21295723	0.007032076307295855	Nanog	ENSMUST00000213326.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215941.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215207.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000213922.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1
mm39_v1_chr4_+_118725980_118725980	0.006684922572080233	Nanog	ENSMUST00000094831.2|Olfr1331|ENSMUSG00000073769.5|olfactory receptor 1331
mm39_v1_chr15_+_99290832_99290903	0.006224790360043357	Nanog	ENSMUST00000160635.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161250.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000229392.2|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6	ENSMUST00000161778.8|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr3_+_138911419_138911461	0.006092413889970637	Nanog	ENSMUST00000106239.8|Stpg2|ENSMUSG00000047940.14|sperm tail PG rich repeat containing 2
mm39_v1_chr8_-_89770790_89770823	0.006020504634496915	Nanog	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr19_+_44980565_44980575	0.005689046329121218	Nanog	ENSMUST00000179305.2|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr18_+_77273510_77273575	0.005600868202678707	Nanog	ENSMUST00000075290.8|St8sia5|ENSMUSG00000025425.19|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	ENSMUST00000079618.11|St8sia5|ENSMUSG00000025425.19|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm39_v1_chr17_+_21165573_21165762	0.005568215740373116	Nanog	ENSMUST00000007708.14|Ppp2r1a|ENSMUSG00000007564.16|protein phosphatase 2, regulatory subunit A, alpha
mm39_v1_chr6_+_42716305_42716305	0.005501714755206246	Nanog	ENSMUST00000213997.2|Olfr453|ENSMUSG00000095831.3|olfactory receptor 453
mm39_v1_chr6_+_70495224_70495236	0.005464776504730492	Nanog	ENSMUST00000103396.2|Igkv3-12|ENSMUSG00000094117.2|immunoglobulin kappa variable 3-12
mm39_v1_chr7_-_115445352_115445389	0.00526549764763276	Nanog	ENSMUST00000206369.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr6_+_129489551_129489605	0.005108574964828955	Nanog	ENSMUST00000204741.3|Tmem52b|ENSMUSG00000030160.8|transmembrane protein 52B
mm39_v1_chr18_+_65184052_65184072	0.00506226212073104	Nanog	ENSMUST00000224347.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr5_-_28672091_28672254	0.004976979827050057	Nanog	ENSMUST00000002708.5|Shh|ENSMUSG00000002633.5|sonic hedgehog
mm39_v1_chr4_-_58553553_58553898	0.004963473656765551	Nanog	ENSMUST00000107575.9|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000107574.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000147354.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr17_+_23879448_23879503	0.004892662717784216	Nanog	ENSMUST00000062967.10|Bicdl2|ENSMUSG00000043782.10|BICD family like cargo adaptor 2
mm39_v1_chr2_-_139908615_139908725	0.004775725337378438	Nanog	ENSMUST00000046656.9|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1	ENSMUST00000099304.4|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1	ENSMUST00000110079.9|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1
mm39_v1_chr13_-_89890609_89890634	0.004756154858332549	Nanog	ENSMUST00000109546.9|Vcan|ENSMUSG00000021614.17|versican
mm39_v1_chr17_+_24633614_24633671	0.004394392847895518	Nanog	ENSMUST00000115371.9|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000088512.13|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000163717.2|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1
mm39_v1_chr1_+_169483062_169483091	0.004109328989749954	Nanog	ENSMUST00000027997.9|Rgs5|ENSMUSG00000026678.11|regulator of G-protein signaling 5	ENSMUST00000152809.3|Rgs5|ENSMUSG00000026678.11|regulator of G-protein signaling 5
mm39_v1_chr3_-_54962458_54962476	0.0037221359648690515	Nanog	ENSMUST00000199352.2|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000198320.5|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000029368.7|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr9_+_92191415_92191439	0.003713011573708736	Nanog	ENSMUST00000150594.8|1700057G04Rik|ENSMUSG00000074139.9|RIKEN cDNA 1700057G04 gene	ENSMUST00000098477.8|1700057G04Rik|ENSMUSG00000074139.9|RIKEN cDNA 1700057G04 gene
mm39_v1_chr1_-_138776315_138776341	0.0036871533444124698	Nanog	ENSMUST00000112030.9|Lhx9|ENSMUSG00000019230.15|LIM homeobox protein 9
mm39_v1_chr12_-_76869510_76869682	0.0036250717213084315	Nanog	ENSMUST00000154765.8|Rab15|ENSMUSG00000021062.16|RAB15, member RAS oncogene family
mm39_v1_chr2_+_37333275_37333371	0.0035567015994166285	Nanog	ENSMUST00000133434.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000061179.12|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr9_-_51013361_51013382	0.0035223530667782407	Nanog	ENSMUST00000170947.3|Hoatz|ENSMUSG00000032057.10|HOATZ cilia and flagella associated protein
mm39_v1_chr7_+_106808645_106808660	0.0034678055172370497	Nanog	ENSMUST00000098135.2|Rbmxl2|ENSMUSG00000073894.2|RNA binding motif protein, X-linked-like 2
mm39_v1_chr7_-_115445315_115445347	0.0033295446312981616	Nanog	ENSMUST00000166207.3|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr3_-_102689986_102689991	0.0032653869283896645	Nanog	ENSMUST00000029450.10|Tshb|ENSMUSG00000027857.11|thyroid stimulating hormone, beta subunit	ENSMUST00000200041.5|Tshb|ENSMUSG00000027857.11|thyroid stimulating hormone, beta subunit
mm39_v1_chr3_-_82783790_82783835	0.0032595137828959385	Nanog	ENSMUST00000048647.14|Rbm46|ENSMUSG00000033882.16|RNA binding motif protein 46
mm39_v1_chr7_+_6463510_6463510	0.003199517513441083	Nanog	ENSMUST00000056120.5|Olfr1336|ENSMUSG00000048620.7|olfactory receptor 1336
mm39_v1_chr4_+_135870808_135870808	0.0030786272642189007	Nanog	ENSMUST00000008016.3|Id3|ENSMUSG00000007872.4|inhibitor of DNA binding 3
mm39_v1_chr3_-_102690026_102690034	0.002976283392617425	Nanog	ENSMUST00000172026.8|Tshb|ENSMUSG00000027857.11|thyroid stimulating hormone, beta subunit	ENSMUST00000170856.6|Tshb|ENSMUSG00000027857.11|thyroid stimulating hormone, beta subunit
mm39_v1_chr17_+_3447465_3447482	0.0029408867840888045	Nanog	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr10_-_92917458_92917492	0.002732773110282662	Nanog	ENSMUST00000212902.2|Cfap54|ENSMUSG00000020014.19|cilia and flagella associated protein 54	ENSMUST00000168617.3|Cfap54|ENSMUSG00000020014.19|cilia and flagella associated protein 54	ENSMUST00000168110.8|Cfap54|ENSMUSG00000020014.19|cilia and flagella associated protein 54	ENSMUST00000020200.14|Cfap54|ENSMUSG00000020014.19|cilia and flagella associated protein 54
mm39_v1_chr7_+_6733561_6733645	0.0022525734953658706	Nanog	ENSMUST00000200535.6|Usp29|ENSMUSG00000051527.12|ubiquitin specific peptidase 29
mm39_v1_chrX_-_111316476_111316476	0.0017679385406369453	Nanog	ENSMUST00000026601.3|Satl1|ENSMUSG00000025527.10|spermidine/spermine N1-acetyl transferase-like 1
mm39_v1_chr3_-_54823287_54823308	0.0017601841593212137	Nanog	ENSMUST00000070342.4|Sertm1|ENSMUSG00000056306.7|serine rich and transmembrane domain containing 1
mm39_v1_chr6_-_142418801_142418841	0.0016783737353148205	Nanog	ENSMUST00000032371.8|Gys2|ENSMUSG00000030244.8|glycogen synthase 2
mm39_v1_chr10_+_127734384_127734401	0.0016446476184287457	Nanog	ENSMUST00000047134.8|Sdr9c7|ENSMUSG00000040127.14|4short chain dehydrogenase/reductase family 9C, member 7
mm39_v1_chr8_-_100143029_100143103	0.001629017362077277	Nanog	ENSMUST00000155527.8|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000142129.8|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000093249.11|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000142475.3|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000128860.8|Cdh8|ENSMUSG00000036510.18|cadherin 8
mm39_v1_chr7_+_6572992_6572992	0.0015106177202688128	Nanog	ENSMUST00000070985.4|Olfr1350|ENSMUSG00000056696.6|olfactory receptor 1350
mm39_v1_chr11_+_50938936_50938936	0.0014366808326094034	Nanog	ENSMUST00000073543.2|Olfr1375|ENSMUSG00000057890.6|olfactory receptor 1375
mm39_v1_chr4_-_118687635_118687635	0.001431332718138276	Nanog	ENSMUST00000076019.4|Olfr1333|ENSMUSG00000110947.2|olfactory receptor 1333
mm39_v1_chr6_+_8259328_8259350	0.001327005441589854	Nanog	ENSMUST00000159378.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr18_+_13139992_13140094	0.0012672476268421919	Nanog	ENSMUST00000041676.3|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234084.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234565.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4
mm39_v1_chr16_+_20514925_20514963	0.0010890424411257457	Nanog	ENSMUST00000128273.2|Fam131a|ENSMUSG00000050821.15|family with sequence similarity 131, member A
mm39_v1_chr15_-_3333003_3333044	0.0010728701749123412	Nanog	ENSMUST00000165386.2|Ccdc152|ENSMUSG00000091119.3|coiled-coil domain containing 152
mm39_v1_chr12_-_83534482_83534504	0.0010628153158148733	Nanog	ENSMUST00000177959.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3	ENSMUST00000178756.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3
mm39_v1_chr18_+_61820982_61821006	0.0010013957296165245	Nanog	ENSMUST00000025471.4|Il17b|ENSMUSG00000024578.4|interleukin 17B
mm39_v1_chr5_-_139761387_139761436	0.000987233041291806	Nanog	ENSMUST00000200393.5|Ints1|ENSMUSG00000029547.11|integrator complex subunit 1	ENSMUST00000072607.9|Ints1|ENSMUSG00000029547.11|integrator complex subunit 1	ENSMUST00000196864.2|Ints1|ENSMUSG00000029547.11|integrator complex subunit 1
mm39_v1_chr5_+_94226027_94226061	0.000903182487019458	Nanog	ENSMUST00000139828.2|Gm6351|ENSMUSG00000072821.5|predicted gene 6351	ENSMUST00000101021.4|Gm6351|ENSMUSG00000072821.5|predicted gene 6351
mm39_v1_chr5_-_147259245_147259259	0.0009004044554971999	Nanog	ENSMUST00000100433.5|Urad|ENSMUSG00000075543.5|ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
mm39_v1_chr9_-_10904714_10904841	0.0007589640056960429	Nanog	ENSMUST00000162484.8|Cntn5|ENSMUSG00000039488.16|contactin 5	ENSMUST00000160216.8|Cntn5|ENSMUSG00000039488.16|contactin 5
mm39_v1_chr5_+_123648523_123648523	0.0007297467723490793	Nanog	ENSMUST00000031384.6|B3gnt4|ENSMUSG00000029431.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
mm39_v1_chr8_+_72863330_72863330	0.0006999213530855358	Nanog	ENSMUST00000209675.2|Olfr374|ENSMUSG00000046881.8|olfactory receptor 374
mm39_v1_chr7_-_139953579_139953579	0.0006552050406959508	Nanog	ENSMUST00000074177.3|Olfr530|ENSMUSG00000060974.4|olfactory receptor 530
mm39_v1_chr11_+_3599183_3599307	0.0006535633011611602	Nanog	ENSMUST00000096441.5|Morc2a|ENSMUSG00000034543.16|microrchidia 2A
mm39_v1_chrX_-_133909934_133909986	0.000607593636152078	Nanog	ENSMUST00000113185.9|Zmat1|ENSMUSG00000052676.17|zinc finger, matrin type 1	ENSMUST00000064659.6|Zmat1|ENSMUSG00000052676.17|zinc finger, matrin type 1
mm39_v1_chr7_-_18852282_18852329	0.0004634033830173498	Nanog	ENSMUST00000141380.3|Meiosin|ENSMUSG00000085601.8|meiosis initiator
mm39_v1_chr16_-_38620688_38620699	0.0004163955933918681	Nanog	ENSMUST00000057767.6|Upk1b|ENSMUSG00000049436.6|uroplakin 1B
mm39_v1_chr6_+_116533366_116533366	0.00033954144967860474	Nanog	ENSMUST00000060204.6|Olfr214|ENSMUSG00000051046.8|olfactory receptor 214
mm39_v1_chr18_-_21785419_21785430	0.0003093973506244455	Nanog	ENSMUST00000049105.11|Klhl14|ENSMUSG00000042514.12|kelch-like 14
mm39_v1_chr7_+_43418404_43418524	0.00029696218471056163	Nanog	ENSMUST00000014063.6|Klk12|ENSMUSG00000044430.12|kallikrein related-peptidase 12
mm39_v1_chr2_+_181134977_181135007	0.0002936235351092247	Nanog	ENSMUST00000069649.9|Abhd16b|ENSMUSG00000055882.9|abhydrolase domain containing 16B
mm39_v1_chr1_+_74401267_74401315	0.00028778669908325575	Nanog	ENSMUST00000097697.8|Catip|ENSMUSG00000073650.9|ciliogenesis associated TTC17 interacting protein
mm39_v1_chr11_+_49385362_49385362	0.00015463560672386082	Nanog	ENSMUST00000071807.2|Olfr1385|ENSMUSG00000059729.3|olfactory receptor 1385
mm39_v1_chr18_+_57275854_57275868	8.946014987017398e-05	Nanog	ENSMUST00000139892.2|Megf10|ENSMUSG00000024593.16|multiple EGF-like-domains 10
mm39_v1_chr15_-_89263466_89263504	7.02642850503793e-05	Nanog	ENSMUST00000228111.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr15_+_98335351_98335351	4.610422545269942e-05	Nanog	ENSMUST00000075851.4|Olfr282|ENSMUSG00000063780.8|olfactory receptor 282
