mm39_v1_chr13_+_23940964_23940996	1.2952319913919097	Nkx3-1	ENSMUST00000102965.4|H4c2|ENSMUSG00000069266.6|H4 clustered histone 2
mm39_v1_chr13_+_23755551_23755571	1.0628760208466193	Nkx3-1	ENSMUST00000079251.8|H2bc8|ENSMUSG00000058385.9|H2B clustered histone 8
mm39_v1_chr17_-_57289121_57289162	0.699939503451474	Nkx3-1	ENSMUST00000056113.5|Acer1|ENSMUSG00000045019.5|alkaline ceramidase 1
mm39_v1_chr16_-_48592372_48592395	0.6709465167062846	Nkx3-1	ENSMUST00000231701.3|Trat1|ENSMUSG00000030775.12|T cell receptor associated transmembrane adaptor 1
mm39_v1_chr9_-_43027809_43027866	0.6590036117309782	Nkx3-1	ENSMUST00000216126.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000213544.2|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5	ENSMUST00000061833.6|Tlcd5|ENSMUSG00000048503.8|TLC domain containing 5
mm39_v1_chr9_-_39863342_39863342	0.6320985448876564	Nkx3-1	ENSMUST00000216647.2|Olfr975|ENSMUSG00000043331.7|olfactory receptor 975
mm39_v1_chr11_-_69649004_69649049	0.5422403359340192	Nkx3-1	ENSMUST00000071213.4|Polr2a|ENSMUSG00000005198.16|polymerase (RNA) II (DNA directed) polypeptide A
mm39_v1_chr17_-_66079629_66079644	0.5180416208355194	Nkx3-1	ENSMUST00000233258.2|Rab31|ENSMUSG00000056515.10|RAB31, member RAS oncogene family
mm39_v1_chr11_+_68989763_68989811	0.5019396549302879	Nkx3-1	ENSMUST00000021271.14|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr19_-_12147438_12147476	0.4805882323978878	Nkx3-1	ENSMUST00000207679.3|Olfr1555-ps1|ENSMUSG00000108889.3|olfactory receptor 1555, pseudogene 1	ENSMUST00000219261.2|Olfr1555-ps1|ENSMUSG00000108889.3|olfactory receptor 1555, pseudogene 1
mm39_v1_chr11_+_45946800_45946895	0.4732242220379523	Nkx3-1	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr19_+_13608985_13608985	0.47228614642426486	Nkx3-1	ENSMUST00000217182.3|Olfr1489|ENSMUSG00000045678.9|olfactory receptor 1489
mm39_v1_chr4_-_15149755_15149794	0.4714652862867448	Nkx3-1	ENSMUST00000108273.2|Necab1|ENSMUSG00000040536.16|N-terminal EF-hand calcium binding protein 1
mm39_v1_chr12_+_76371634_76371674	0.4641327510847652	Nkx3-1	ENSMUST00000154078.3|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5	ENSMUST00000095610.9|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5
mm39_v1_chr16_-_58695131_58695131	0.4476006913606967	Nkx3-1	ENSMUST00000217377.2|Olfr177|ENSMUSG00000063137.6|olfactory receptor 177
mm39_v1_chr2_-_88534814_88534941	0.41018108906093437	Nkx3-1	ENSMUST00000216928.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196	ENSMUST00000216977.2|Olfr1196|ENSMUSG00000075120.5|olfactory receptor 1196
mm39_v1_chr5_-_86824205_86824227	0.40143619078429316	Nkx3-1	ENSMUST00000038448.7|Tmprss11b|ENSMUSG00000035861.7|transmembrane protease, serine 11B
mm39_v1_chr7_+_107649900_107649900	0.39330775295643816	Nkx3-1	ENSMUST00000214599.2|Olfr479|ENSMUSG00000043855.8|olfactory receptor 479	ENSMUST00000209805.3|Olfr479|ENSMUSG00000043855.8|olfactory receptor 479
mm39_v1_chr2_-_89951611_89951756	0.3780805017216902	Nkx3-1	ENSMUST00000216493.2|Olfr1269|ENSMUSG00000084336.3|olfactory receptor 1269	ENSMUST00000214404.2|Olfr1269|ENSMUSG00000084336.3|olfactory receptor 1269
mm39_v1_chr19_+_43678109_43678133	0.3737127457052695	Nkx3-1	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr10_-_4382311_4382388	0.37191772360529746	Nkx3-1	ENSMUST00000126102.8|Rmnd1|ENSMUSG00000019763.12|required for meiotic nuclear division 1 homolog	ENSMUST00000131853.2|Rmnd1|ENSMUSG00000019763.12|required for meiotic nuclear division 1 homolog	ENSMUST00000042251.11|Rmnd1|ENSMUSG00000019763.12|required for meiotic nuclear division 1 homolog
mm39_v1_chr1_-_173569301_173569352	0.3626145969159687	Nkx3-1	ENSMUST00000042610.15|Ifi207|ENSMUSG00000073490.12|interferon activated gene 207	ENSMUST00000127730.2|Ifi207|ENSMUSG00000073490.12|interferon activated gene 207
mm39_v1_chr1_+_174251630_174251630	0.3575642720706277	Nkx3-1	ENSMUST00000192358.3|Olfr414|ENSMUSG00000051509.7|olfactory receptor 414
mm39_v1_chr2_-_87838612_87838612	0.35518867331239007	Nkx3-1	ENSMUST00000215457.2|Olfr1160|ENSMUSG00000075141.6|olfactory receptor 1160
mm39_v1_chr2_-_85966272_85966272	0.34832061240475337	Nkx3-1	ENSMUST00000216566.3|Olfr1039|ENSMUSG00000075204.4|olfactory receptor 1039	ENSMUST00000214364.2|Olfr1039|ENSMUSG00000075204.4|olfactory receptor 1039
mm39_v1_chr15_-_74983786_74983825	0.3435230793500661	Nkx3-1	ENSMUST00000191451.2|Ly6c2|ENSMUSG00000022584.15|lymphocyte antigen 6 complex, locus C2	ENSMUST00000100542.10|Ly6c2|ENSMUSG00000022584.15|lymphocyte antigen 6 complex, locus C2
mm39_v1_chr10_+_129539079_129539079	0.3413892997062153	Nkx3-1	ENSMUST00000213331.2|Olfr804|ENSMUSG00000095401.3|olfactory receptor 804
mm39_v1_chr8_-_123405392_123405433	0.3387995390939379	Nkx3-1	ENSMUST00000134045.2|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr7_-_28297565_28297610	0.3373336990937452	Nkx3-1	ENSMUST00000040531.9|Samd4b|ENSMUSG00000109336.2|sterile alpha motif domain containing 4B	ENSMUST00000108283.8|Pak4|ENSMUSG00000030602.14|p21 (RAC1) activated kinase 4
mm39_v1_chr8_-_96534043_96534081	0.3269080163521615	Nkx3-1	ENSMUST00000213046.2|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1
mm39_v1_chr10_-_13199971_13200069	0.3264714756536208	Nkx3-1	ENSMUST00000105543.9|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr12_+_102249294_102249339	0.32426358427613144	Nkx3-1	ENSMUST00000056950.14|Rin3|ENSMUSG00000044456.17|Ras and Rab interactor 3
mm39_v1_chr9_-_88974735_88974888	0.31883912493605293	Nkx3-1	ENSMUST00000189557.2|Trim43b|ENSMUSG00000079162.9|tripartite motif-containing 43B	ENSMUST00000167113.8|Trim43b|ENSMUSG00000079162.9|tripartite motif-containing 43B
mm39_v1_chr18_+_75151780_75151887	0.3168076100272377	Nkx3-1	ENSMUST00000236220.2|Dym|ENSMUSG00000035765.11|dymeclin	ENSMUST00000039608.9|Dym|ENSMUSG00000035765.11|dymeclin	ENSMUST00000235692.2|Dym|ENSMUSG00000035765.11|dymeclin
mm39_v1_chr19_-_59931432_59931532	0.2516211771532118	Nkx3-1	ENSMUST00000170819.2|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr2_-_89408791_89408791	0.25009101525219246	Nkx3-1	ENSMUST00000217402.2|Olfr1245|ENSMUSG00000111456.2|olfactory receptor 1245
mm39_v1_chr12_-_100865783_100865840	0.24859177867411492	Nkx3-1	ENSMUST00000053668.10|Gpr68|ENSMUSG00000047415.13|G protein-coupled receptor 68
mm39_v1_chr6_+_89946295_89946295	0.24513007019010702	Nkx3-1	ENSMUST00000205088.3|Vmn1r46|ENSMUSG00000061653.5|vomeronasal 1 receptor 46	ENSMUST00000226715.2|Vmn1r46|ENSMUSG00000061653.5|vomeronasal 1 receptor 46	ENSMUST00000228401.2|Vmn1r46|ENSMUSG00000061653.5|vomeronasal 1 receptor 46
mm39_v1_chr7_+_5221492_5221492	0.23067112953054358	Nkx3-1	ENSMUST00000228062.2|Vmn1r57|ENSMUSG00000091652.3|vomeronasal 1 receptor 57	ENSMUST00000227798.2|Vmn1r57|ENSMUSG00000091652.3|vomeronasal 1 receptor 57
mm39_v1_chr4_-_120874376_120874456	0.2280743098451981	Nkx3-1	ENSMUST00000043200.8|Smap2|ENSMUSG00000032870.9|small ArfGAP 2
mm39_v1_chr13_-_42000958_42000965	0.22090938875811134	Nkx3-1	ENSMUST00000072012.10|Adtrp|ENSMUSG00000058022.15|androgen dependent TFPI regulating protein
mm39_v1_chr17_+_35354148_35354159	0.2034300860715658	Nkx3-1	ENSMUST00000166426.9|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000025250.14|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr2_+_89842475_89842497	0.20128380569326734	Nkx3-1	ENSMUST00000214382.2|Olfr1263|ENSMUSG00000059112.7|olfactory receptor 1263	ENSMUST00000217065.3|Olfr1263|ENSMUSG00000059112.7|olfactory receptor 1263
mm39_v1_chr9_+_72345801_72345880	0.200754465684423	Nkx3-1	ENSMUST00000184604.8|Mns1|ENSMUSG00000032221.15|meiosis-specific nuclear structural protein 1	ENSMUST00000034746.10|Mns1|ENSMUSG00000032221.15|meiosis-specific nuclear structural protein 1
mm39_v1_chr16_+_38279289_38279480	0.20031927877626532	Nkx3-1	ENSMUST00000099816.3|Cd80|ENSMUSG00000075122.6|CD80 antigen	ENSMUST00000232409.2|Cd80|ENSMUSG00000075122.6|CD80 antigen
mm39_v1_chr17_+_37710293_37710304	0.1987789427205692	Nkx3-1	ENSMUST00000216844.2|Olfr107|ENSMUSG00000063188.5|olfactory receptor 107	ENSMUST00000215974.2|Olfr107|ENSMUSG00000063188.5|olfactory receptor 107	ENSMUST00000215894.2|Olfr107|ENSMUSG00000063188.5|olfactory receptor 107
mm39_v1_chr3_-_64417263_64417263	0.19365801362704982	Nkx3-1	ENSMUST00000177184.9|Vmn2r5|ENSMUSG00000068999.14|vomeronasal 2, receptor 5
mm39_v1_chr7_-_24937276_24937302	0.1929404406105117	Nkx3-1	ENSMUST00000071739.12|Gsk3a|ENSMUSG00000057177.13|glycogen synthase kinase 3 alpha	ENSMUST00000108411.2|Gsk3a|ENSMUSG00000057177.13|glycogen synthase kinase 3 alpha
mm39_v1_chr3_-_95595157_95595228	0.19270199922830275	Nkx3-1	ENSMUST00000015994.4|Adamtsl4|ENSMUSG00000015850.12|ADAMTS-like 4	ENSMUST00000148854.2|Adamtsl4|ENSMUSG00000015850.12|ADAMTS-like 4	ENSMUST00000117782.8|Adamtsl4|ENSMUSG00000015850.12|ADAMTS-like 4
mm39_v1_chr2_-_111908072_111908188	0.1916203861238834	Nkx3-1	ENSMUST00000213577.2|Olfr1313|ENSMUSG00000074946.6|olfactory receptor 1313	ENSMUST00000216071.2|Olfr1313|ENSMUSG00000074946.6|olfactory receptor 1313
mm39_v1_chr10_-_14593935_14593972	0.19089232977447607	Nkx3-1	ENSMUST00000020016.5|Gje1|ENSMUSG00000019867.5|gap junction protein, epsilon 1
mm39_v1_chr17_+_43327412_43327482	0.19023825684202023	Nkx3-1	ENSMUST00000024708.6|Tnfrsf21|ENSMUSG00000023915.6|tumor necrosis factor receptor superfamily, member 21
mm39_v1_chr12_-_77008799_77008832	0.18829101678764118	Nkx3-1	ENSMUST00000218640.2|Max|ENSMUSG00000059436.14|Max protein
mm39_v1_chr15_-_50746202_50746218	0.18479661963201735	Nkx3-1	ENSMUST00000184885.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr11_+_101169918_101169973	0.18081665738682762	Nkx3-1	ENSMUST00000103107.5|Cntd1|ENSMUSG00000078653.5|cyclin N-terminal domain containing 1
mm39_v1_chr11_+_74077075_74077075	0.18055513328953837	Nkx3-1	ENSMUST00000206114.3|Olfr403|ENSMUSG00000070378.4|olfactory receptor 403
mm39_v1_chr19_-_17333972_17334031	0.17971826594376597	Nkx3-1	ENSMUST00000174236.8|Gcnt1|ENSMUSG00000038843.19|glucosaminyl (N-acetyl) transferase 1, core 2
mm39_v1_chr16_-_11727262_11727309	0.1729486632333313	Nkx3-1	ENSMUST00000127972.8|Cpped1|ENSMUSG00000065979.13|calcineurin-like phosphoesterase domain containing 1	ENSMUST00000121750.2|Cpped1|ENSMUSG00000065979.13|calcineurin-like phosphoesterase domain containing 1	ENSMUST00000096272.11|Cpped1|ENSMUSG00000065979.13|calcineurin-like phosphoesterase domain containing 1	ENSMUST00000073371.7|Cpped1|ENSMUSG00000065979.13|calcineurin-like phosphoesterase domain containing 1
mm39_v1_chr8_+_114860342_114860370	0.16694087981216207	Nkx3-1	ENSMUST00000109109.8|Nudt7|ENSMUSG00000031767.14|nudix (nucleoside diphosphate linked moiety X)-type motif 7
mm39_v1_chr8_-_96534085_96534099	0.16477874516090535	Nkx3-1	ENSMUST00000098473.11|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1	ENSMUST00000211887.2|Cnot1|ENSMUSG00000036550.17|CCR4-NOT transcription complex, subunit 1
mm39_v1_chr17_+_35354172_35354221	0.15816323368451493	Nkx3-1	ENSMUST00000172571.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6	ENSMUST00000173491.8|Bag6|ENSMUSG00000024392.18|BCL2-associated athanogene 6
mm39_v1_chr17_+_38456172_38456284	0.15738923770275554	Nkx3-1	ENSMUST00000215078.3|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133	ENSMUST00000215549.3|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133	ENSMUST00000173610.2|Olfr133|ENSMUSG00000063240.7|olfactory receptor 133
mm39_v1_chr7_+_75105282_75105290	0.15635029600340905	Nkx3-1	ENSMUST00000207750.2|Akap13|ENSMUSG00000066406.17|A kinase (PRKA) anchor protein 13	ENSMUST00000166315.7|Akap13|ENSMUSG00000066406.17|A kinase (PRKA) anchor protein 13
mm39_v1_chr7_+_135207505_135207557	0.15564179480581544	Nkx3-1	ENSMUST00000210833.2|Ptpre|ENSMUSG00000041836.11|protein tyrosine phosphatase, receptor type, E
mm39_v1_chr2_+_37029334_37029387	0.15414214750638233	Nkx3-1	ENSMUST00000214905.2|Olfr364-ps1|ENSMUSG00000078198.3|olfactory receptor 364, pseudogene 1	ENSMUST00000217298.2|Olfr364-ps1|ENSMUSG00000078198.3|olfactory receptor 364, pseudogene 1	ENSMUST00000104995.3|Olfr364-ps1|ENSMUSG00000078198.3|olfactory receptor 364, pseudogene 1
mm39_v1_chr1_-_155910567_155910626	0.15191680429105164	Nkx3-1	ENSMUST00000141878.8|Tor1aip1|ENSMUSG00000026466.17|torsin A interacting protein 1
mm39_v1_chr2_+_79538124_79538271	0.15017492845566824	Nkx3-1	ENSMUST00000090760.9|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C	ENSMUST00000040863.11|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C	ENSMUST00000111780.3|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C
mm39_v1_chr8_-_3798941_3798984	0.1473363918369249	Nkx3-1	ENSMUST00000012847.3|Cd209a|ENSMUSG00000031494.8|CD209a antigen
mm39_v1_chr1_-_80642969_80643023	0.14335373223426146	Nkx3-1	ENSMUST00000190983.7|Dock10|ENSMUSG00000038608.16|dedicator of cytokinesis 10	ENSMUST00000191449.2|Dock10|ENSMUSG00000038608.16|dedicator of cytokinesis 10
mm39_v1_chr6_+_137229332_137229353	0.14334690116571858	Nkx3-1	ENSMUST00000167679.8|Ptpro|ENSMUSG00000030223.15|protein tyrosine phosphatase, receptor type, O
mm39_v1_chr11_-_73800125_73800125	0.14078283010264708	Nkx3-1	ENSMUST00000215690.2|Olfr395|ENSMUSG00000062186.3|olfactory receptor 395
mm39_v1_chr15_+_98065039_98065039	0.1403766092089488	Nkx3-1	ENSMUST00000031914.6|Ccdc184|ENSMUSG00000029875.6|coiled-coil domain containing 184
mm39_v1_chr8_-_3798922_3798935	0.137020013345184	Nkx3-1	ENSMUST00000208960.2|Cd209a|ENSMUSG00000031494.8|CD209a antigen	ENSMUST00000207979.2|Cd209a|ENSMUSG00000031494.8|CD209a antigen
mm39_v1_chr7_-_85610837_85610837	0.13557841056791659	Nkx3-1	ENSMUST00000232886.2|Vmn2r74|ENSMUSG00000090774.3|vomeronasal 2, receptor 74	ENSMUST00000232758.2|Vmn2r74|ENSMUSG00000090774.3|vomeronasal 2, receptor 74	ENSMUST00000166355.3|Vmn2r74|ENSMUSG00000090774.3|vomeronasal 2, receptor 74
mm39_v1_chr7_+_29467971_29467985	0.1353233816344931	Nkx3-1	ENSMUST00000032802.5|Zfp84|ENSMUSG00000046185.11|zinc finger protein 84
mm39_v1_chr4_+_62537750_62537819	0.13469579958476302	Nkx3-1	ENSMUST00000084521.11|Rgs3|ENSMUSG00000059810.19|regulator of G-protein signaling 3	ENSMUST00000107424.2|Rgs3|ENSMUSG00000059810.19|regulator of G-protein signaling 3
mm39_v1_chr6_-_41012435_41012448	0.12996646759982067	Nkx3-1	ENSMUST00000031931.6|2210010C04Rik|ENSMUSG00000029882.6|RIKEN cDNA 2210010C04 gene
mm39_v1_chr10_+_25317309_25317509	0.12757798459686412	Nkx3-1	ENSMUST00000217929.2|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2	ENSMUST00000220121.2|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2
mm39_v1_chr2_-_88810595_88810625	0.1258227256844664	Nkx3-1	ENSMUST00000168169.10|Olfr1213|ENSMUSG00000075111.12|olfactory receptor 1213	ENSMUST00000144908.3|Olfr1213|ENSMUSG00000075111.12|olfactory receptor 1213
mm39_v1_chr10_-_129751466_129751466	0.12276347180939831	Nkx3-1	ENSMUST00000213438.2|Olfr816|ENSMUSG00000063715.3|olfactory receptor 816
mm39_v1_chr19_-_12209960_12209960	0.1192701404081995	Nkx3-1	ENSMUST00000207710.3|Olfr1432|ENSMUSG00000109022.3|olfactory receptor 1432
mm39_v1_chr1_-_133834790_133834910	0.11827763313362843	Nkx3-1	ENSMUST00000149380.8|Optc|ENSMUSG00000010311.16|opticin	ENSMUST00000124051.9|Optc|ENSMUSG00000010311.16|opticin
mm39_v1_chr7_-_43906802_43906802	0.11825588275998583	Nkx3-1	ENSMUST00000107945.8|Acp4|ENSMUSG00000012777.15|acid phosphatase 4	ENSMUST00000118216.8|Acp4|ENSMUSG00000012777.15|acid phosphatase 4
mm39_v1_chr9_+_20209828_20209891	0.11647137043472047	Nkx3-1	ENSMUST00000215540.2|Olfr873|ENSMUSG00000049028.9|olfactory receptor 873	ENSMUST00000075717.7|Olfr873|ENSMUSG00000049028.9|olfactory receptor 873
mm39_v1_chr12_-_115832846_115832874	0.11265354884350381	Nkx3-1	ENSMUST00000199373.2|Ighv1-78|ENSMUSG00000096326.3|immunoglobulin heavy variable 1-78
mm39_v1_chr1_-_155910546_155910563	0.10912802114207612	Nkx3-1	ENSMUST00000169241.8|Tor1aip1|ENSMUSG00000026466.17|torsin A interacting protein 1
mm39_v1_chr3_-_20296337_20296351	0.10899521112131032	Nkx3-1	ENSMUST00000001921.3|Cpa3|ENSMUSG00000001865.3|carboxypeptidase A3, mast cell
mm39_v1_chr18_+_61096597_61096651	0.10787393278629097	Nkx3-1	ENSMUST00000115295.9|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr10_+_78848306_78848306	0.10447009869045985	Nkx3-1	ENSMUST00000216030.2|Olfr1351|ENSMUSG00000063216.4|olfactory receptor 1351
mm39_v1_chr4_-_140501507_140501547	0.10232407355537965	Nkx3-1	ENSMUST00000026381.7|Padi4|ENSMUSG00000025330.7|peptidyl arginine deiminase, type IV
mm39_v1_chr3_-_113166153_113166153	0.10025029359442769	Nkx3-1	ENSMUST00000098673.5|Amy2a5|ENSMUSG00000074268.5|amylase 2a5
mm39_v1_chr3_+_96603694_96603714	0.10014781986405547	Nkx3-1	ENSMUST00000107076.10|Pias3|ENSMUSG00000028101.19|protein inhibitor of activated STAT 3
mm39_v1_chr19_+_11446716_11446746	0.09443638290412848	Nkx3-1	ENSMUST00000165310.3|Ms4a6c|ENSMUSG00000079419.5|membrane-spanning 4-domains, subfamily A, member 6C
mm39_v1_chr6_+_54016543_54016560	0.09326746200803675	Nkx3-1	ENSMUST00000046856.14|Chn2|ENSMUSG00000004633.18|chimerin 2
mm39_v1_chr1_-_52992330_52992509	0.09186780310036338	Nkx3-1	ENSMUST00000114492.8|1700019D03Rik|ENSMUSG00000043629.13|RIKEN cDNA 1700019D03 gene
mm39_v1_chr16_+_56024676_56024701	0.08919494296270702	Nkx3-1	ENSMUST00000160116.8|Impg2|ENSMUSG00000035270.16|interphotoreceptor matrix proteoglycan 2	ENSMUST00000069936.8|Impg2|ENSMUSG00000035270.16|interphotoreceptor matrix proteoglycan 2
mm39_v1_chr19_-_10217968_10218125	0.08899364438581896	Nkx3-1	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr6_-_128339775_128339889	0.08503321774342992	Nkx3-1	ENSMUST00000112152.8|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1	ENSMUST00000057421.15|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1	ENSMUST00000112151.2|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1
mm39_v1_chr9_+_38516398_38516398	0.083760816606081	Nkx3-1	ENSMUST00000217057.2|Olfr914|ENSMUSG00000047050.3|olfactory receptor 914
mm39_v1_chr13_+_109769294_109769321	0.0836846876128192	Nkx3-1	ENSMUST00000135275.8|Pde4d|ENSMUSG00000021699.18|phosphodiesterase 4D, cAMP specific
mm39_v1_chr12_-_98700886_98700952	0.08161637518185484	Nkx3-1	ENSMUST00000085116.4|Ptpn21|ENSMUSG00000021009.16|protein tyrosine phosphatase, non-receptor type 21
mm39_v1_chr5_-_69749617_69749683	0.08130363690272613	Nkx3-1	ENSMUST00000173927.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2	ENSMUST00000120789.8|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2	ENSMUST00000031117.13|Gnpda2|ENSMUSG00000029209.16|glucosamine-6-phosphate deaminase 2
mm39_v1_chr3_-_113263974_113263974	0.07878594425502747	Nkx3-1	ENSMUST00000098667.5|Amy2a2|ENSMUSG00000096569.3|amylase 2a2
mm39_v1_chr17_-_35381945_35382014	0.0775778937132633	Nkx3-1	ENSMUST00000174805.2|Prrc2a|ENSMUSG00000024393.15|proline-rich coiled-coil 2A
mm39_v1_chr6_+_68279392_68279411	0.07336053086729212	Nkx3-1	ENSMUST00000103322.3|Igkv2-109|ENSMUSG00000105606.2|immunoglobulin kappa variable 2-109
mm39_v1_chr7_-_107857554_107857554	0.07255176584117956	Nkx3-1	ENSMUST00000215173.2|Olfr488|ENSMUSG00000096465.4|olfactory receptor 488
mm39_v1_chr7_-_5808444_5808444	0.07235084515619543	Nkx3-1	ENSMUST00000075085.7|Vmn1r63|ENSMUSG00000058631.7|vomeronasal 1 receptor 63
mm39_v1_chr3_-_113231368_113231368	0.06589072126348754	Nkx3-1	ENSMUST00000179314.3|Amy2a3|ENSMUSG00000093931.3|amylase 2a3
mm39_v1_chr19_-_8382424_8382475	0.06548923658826647	Nkx3-1	ENSMUST00000064507.12|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30	ENSMUST00000120540.2|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30	ENSMUST00000096269.11|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30
mm39_v1_chr1_-_80643024_80643074	0.06452158405531587	Nkx3-1	ENSMUST00000187774.7|Dock10|ENSMUSG00000038608.16|dedicator of cytokinesis 10
mm39_v1_chr2_-_57014015_57014083	0.06405985251999242	Nkx3-1	ENSMUST00000112629.8|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr11_-_121410152_121410167	0.06214894323490166	Nkx3-1	ENSMUST00000092298.6|Zfp750|ENSMUSG00000039238.7|zinc finger protein 750
mm39_v1_chr11_-_101169753_101169940	0.0604424656722085	Nkx3-1	ENSMUST00000168089.2|Coa3|ENSMUSG00000017188.4|cytochrome C oxidase assembly factor 3	ENSMUST00000017332.4|Coa3|ENSMUSG00000017188.4|cytochrome C oxidase assembly factor 3
mm39_v1_chr7_+_110226857_110226873	0.059277725879081374	Nkx3-1	ENSMUST00000033054.10|Adm|ENSMUSG00000030790.16|adrenomedullin
mm39_v1_chr2_+_87078357_87078382	0.05878768932382012	Nkx3-1	ENSMUST00000214119.2|Olfr1115|ENSMUSG00000070856.6|olfactory receptor 1115	ENSMUST00000217196.3|Olfr1115|ENSMUSG00000070856.6|olfactory receptor 1115	ENSMUST00000213513.2|Olfr1115|ENSMUSG00000070856.6|olfactory receptor 1115
mm39_v1_chr9_+_74883377_74883460	0.05642960613035599	Nkx3-1	ENSMUST00000081746.7|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr11_+_95152355_95152355	0.05608132648852769	Nkx3-1	ENSMUST00000021242.5|Tac4|ENSMUSG00000020872.5|tachykinin 4
mm39_v1_chr3_-_113198765_113198765	0.05528287201044186	Nkx3-1	ENSMUST00000179568.3|Amy2a4|ENSMUSG00000096770.3|amylase 2a4
mm39_v1_chr17_-_80022480_80022532	0.0525057431774938	Nkx3-1	ENSMUST00000234361.2|Cyp1b1|ENSMUSG00000024087.5|cytochrome P450, family 1, subfamily b, polypeptide 1
mm39_v1_chr3_-_127202586_127202630	0.052346745588051954	Nkx3-1	ENSMUST00000183095.3|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain	ENSMUST00000182610.8|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr1_-_69723316_69723473	0.04937192236622651	Nkx3-1	ENSMUST00000190855.7|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2	ENSMUST00000188110.7|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2	ENSMUST00000191262.7|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr7_-_10011933_10011933	0.04855670063859218	Nkx3-1	ENSMUST00000227719.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228622.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66	ENSMUST00000228086.2|Vmn1r66|ENSMUSG00000043066.6|vomeronasal 1 receptor 66
mm39_v1_chr14_+_51599213_51599213	0.046997744640649486	Nkx3-1	ENSMUST00000162998.2|Gm7247|ENSMUSG00000068399.6|predicted gene 7247
mm39_v1_chr8_+_85952617_85952617	0.04527510978437387	Nkx3-1	ENSMUST00000218663.2|Olfr371|ENSMUSG00000051952.6|olfactory receptor 371
mm39_v1_chr5_-_134776101_134776177	0.04239944261096717	Nkx3-1	ENSMUST00000015138.13|Eln|ENSMUSG00000029675.13|elastin
mm39_v1_chr3_-_127202693_127202713	0.04188394193764204	Nkx3-1	ENSMUST00000182078.9|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr1_+_172168764_172168785	0.04074301271511207	Nkx3-1	ENSMUST00000056136.4|Kcnj10|ENSMUSG00000044708.6|potassium inwardly-rectifying channel, subfamily J, member 10
mm39_v1_chr14_-_55101505_55101615	0.03927368413117082	Nkx3-1	ENSMUST00000142283.4|Homez|ENSMUSG00000057156.11|homeodomain leucine zipper-encoding gene
mm39_v1_chr12_+_76371679_76371706	0.03848856874871391	Nkx3-1	ENSMUST00000172992.2|Akap5|ENSMUSG00000021057.16|A kinase (PRKA) anchor protein 5
mm39_v1_chr17_-_48003391_48003391	0.03685235910105223	Nkx3-1	ENSMUST00000113300.8|Prickle4|ENSMUSG00000096549.10|prickle planar cell polarity protein 4
mm39_v1_chr17_-_15784582_15784622	0.035686350274104474	Nkx3-1	ENSMUST00000147532.8|Prdm9|ENSMUSG00000051977.17|PR domain containing 9
mm39_v1_chrY_+_57195716_57195734	0.03416803309138145	Nkx3-1	ENSMUST00000189109.7|Sly|ENSMUSG00000101155.7|Sycp3 like Y-linked	ENSMUST00000191355.7|Sly|ENSMUSG00000101155.7|Sycp3 like Y-linked	ENSMUST00000190292.2|Sly|ENSMUSG00000101155.7|Sycp3 like Y-linked
mm39_v1_chr3_-_127202663_127202692	0.03363203009489951	Nkx3-1	ENSMUST00000182008.8|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain	ENSMUST00000182547.8|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr14_+_61547202_61547264	0.03089036589336887	Nkx3-1	ENSMUST00000055159.8|Arl11|ENSMUSG00000043157.9|ADP-ribosylation factor-like 11
mm39_v1_chr11_-_73290321_73290440	0.029716829196844523	Nkx3-1	ENSMUST00000131253.2|Olfr1|ENSMUSG00000069823.12|olfactory receptor 1	ENSMUST00000120303.9|Olfr1|ENSMUSG00000069823.12|olfactory receptor 1
mm39_v1_chr5_-_21629661_21629684	0.028542782257358876	Nkx3-1	ENSMUST00000115245.8|Ccdc146|ENSMUSG00000064280.15|coiled-coil domain containing 146	ENSMUST00000030552.7|Ccdc146|ENSMUSG00000064280.15|coiled-coil domain containing 146
mm39_v1_chr4_-_108075119_108075262	0.028230925882240628	Nkx3-1	ENSMUST00000223127.2|Zyg11a|ENSMUSG00000034645.15|zyg-11 family member A, cell cycle regulator	ENSMUST00000043793.7|Zyg11a|ENSMUSG00000034645.15|zyg-11 family member A, cell cycle regulator	ENSMUST00000106690.9|Zyg11a|ENSMUSG00000034645.15|zyg-11 family member A, cell cycle regulator
mm39_v1_chr12_-_103660916_103660931	0.025548005668942025	Nkx3-1	ENSMUST00000117053.8|Serpina1f|ENSMUSG00000021081.13|serine (or cysteine) peptidase inhibitor, clade A, member 1F
mm39_v1_chr4_+_110254858_110254905	0.024521176882538978	Nkx3-1	ENSMUST00000106589.9|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000106587.9|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000106591.8|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000106592.8|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4
mm39_v1_chrX_-_100266032_100266169	0.024520685812634675	Nkx3-1	ENSMUST00000120389.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000156473.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000077876.4|Snx12|ENSMUSG00000046032.17|sorting nexin 12
mm39_v1_chr8_-_3722290_3722373	0.02413099731559585	Nkx3-1	ENSMUST00000159364.3|Fcor|ENSMUSG00000089665.3|Foxo1 corepressor
mm39_v1_chr7_+_138794577_138794598	0.022534522633291632	Nkx3-1	ENSMUST00000135509.2|Lrrc27|ENSMUSG00000015980.15|leucine rich repeat containing 27
mm39_v1_chr1_-_192718064_192718140	0.021926519966327288	Nkx3-1	ENSMUST00000215093.2|Syt14|ENSMUSG00000016200.15|synaptotagmin XIV	ENSMUST00000195354.6|Syt14|ENSMUSG00000016200.15|synaptotagmin XIV
mm39_v1_chr8_+_124059414_124059480	0.02136704259497924	Nkx3-1	ENSMUST00000010298.7|Spire2|ENSMUSG00000010154.8|spire type actin nucleation factor 2
mm39_v1_chr15_+_100320028_100320028	0.0209239280406799	Nkx3-1	ENSMUST00000132119.2|Gm5475|ENSMUSG00000087444.2|predicted gene 5475
mm39_v1_chr2_-_89084074_89084074	0.020337244276522205	Nkx3-1	ENSMUST00000216392.2|Olfr1228|ENSMUSG00000099486.4|olfactory receptor 1228
mm39_v1_chr13_+_35059285_35059285	0.01989831920911467	Nkx3-1	ENSMUST00000077853.5|Prpf4b|ENSMUSG00000021413.10|pre-mRNA processing factor 4B
mm39_v1_chr6_+_86055018_86055046	0.01906544121481927	Nkx3-1	ENSMUST00000205034.3|Add2|ENSMUSG00000030000.11|adducin 2 (beta)	ENSMUST00000203724.3|Add2|ENSMUSG00000030000.11|adducin 2 (beta)
mm39_v1_chr2_-_84605732_84605756	0.018975742201240833	Nkx3-1	ENSMUST00000023994.10|Serping1|ENSMUSG00000023224.13|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm39_v1_chr3_-_87934772_87934808	0.01897200060963652	Nkx3-1	ENSMUST00000005014.9|Hapln2|ENSMUSG00000004894.11|hyaluronan and proteoglycan link protein 2
mm39_v1_chrX_-_99669507_99669560	0.018784009338228547	Nkx3-1	ENSMUST00000059099.7|Pdzd11|ENSMUSG00000015668.14|PDZ domain containing 11
mm39_v1_chr19_+_13037974_13038043	0.01861770907007582	Nkx3-1	ENSMUST00000213806.2|Olfr1454|ENSMUSG00000094986.4|olfactory receptor 1454	ENSMUST00000214695.2|Olfr1454|ENSMUSG00000094986.4|olfactory receptor 1454	ENSMUST00000217568.2|Olfr1454|ENSMUSG00000094986.4|olfactory receptor 1454
mm39_v1_chr9_+_77829191_77829214	0.017352722417943035	Nkx3-1	ENSMUST00000133757.8|Elovl5|ENSMUSG00000032349.14|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm39_v1_chr6_+_86055048_86055071	0.015612626451754177	Nkx3-1	ENSMUST00000032069.8|Add2|ENSMUSG00000030000.11|adducin 2 (beta)
mm39_v1_chr14_-_21798678_21798693	0.01481310973447893	Nkx3-1	ENSMUST00000075040.9|Dusp13|ENSMUSG00000021768.16|dual specificity phosphatase 13
mm39_v1_chr9_+_37765565_37765565	0.014222596022804884	Nkx3-1	ENSMUST00000213956.2|Olfr877|ENSMUSG00000066749.4|olfactory receptor 877
mm39_v1_chrX_+_163052367_163052514	0.01313704024020053	Nkx3-1	ENSMUST00000145412.8|Pir|ENSMUSG00000031379.14|pirin	ENSMUST00000033749.9|Pir|ENSMUSG00000031379.14|pirin
mm39_v1_chr4_+_110254907_110255005	0.01278180121218725	Nkx3-1	ENSMUST00000097920.9|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4	ENSMUST00000080744.13|Agbl4|ENSMUSG00000061298.15|ATP/GTP binding protein-like 4
mm39_v1_chr17_-_37613523_37613523	0.012664735944605267	Nkx3-1	ENSMUST00000215392.2|Olfr101|ENSMUSG00000092077.3|olfactory receptor 101
mm39_v1_chr19_-_13074935_13074935	0.012408292218640314	Nkx3-1	ENSMUST00000214561.3|Olfr1457|ENSMUSG00000061637.6|olfactory receptor 1457
mm39_v1_chr1_-_173594475_173594494	0.012225953642668992	Nkx3-1	ENSMUST00000111214.4|Ifi204|ENSMUSG00000073489.7|interferon activated gene 204
mm39_v1_chrX_-_74918122_74918195	0.011320883049401206	Nkx3-1	ENSMUST00000033547.14|Pls3|ENSMUSG00000016382.16|plastin 3 (T-isoform)
mm39_v1_chr1_-_86317066_86317151	0.01084165033387426	Nkx3-1	ENSMUST00000212058.2|Nmur1|ENSMUSG00000026237.7|neuromedin U receptor 1
mm39_v1_chrY_+_65386218_65386230	0.010805377991864637	Nkx3-1	ENSMUST00000190282.7|Gm20736|ENSMUSG00000093993.8|predicted gene, 20736	ENSMUST00000185550.7|Gm20736|ENSMUSG00000093993.8|predicted gene, 20736
mm39_v1_chrY_+_6583546_6583546	0.010497491079444284	Nkx3-1	ENSMUST00000190026.2|Gm28919|ENSMUSG00000101243.2|predicted gene 28919
mm39_v1_chr14_+_61547267_61547305	0.010469234126692645	Nkx3-1	ENSMUST00000224727.2|Arl11|ENSMUSG00000043157.9|ADP-ribosylation factor-like 11
mm39_v1_chrY_-_40272248_40272248	0.010466086496122207	Nkx3-1	ENSMUST00000191443.7|Gm21865|ENSMUSG00000093895.8|predicted gene, 21865
mm39_v1_chr1_-_162694076_162694185	0.010393029657821564	Nkx3-1	ENSMUST00000046049.14|Fmo1|ENSMUSG00000040181.15|flavin containing monooxygenase 1
mm39_v1_chr2_+_132688558_132688628	0.010255139215200415	Nkx3-1	ENSMUST00000028835.13|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1	ENSMUST00000110122.10|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1
mm39_v1_chr7_-_108471586_108471586	0.010165123985924743	Nkx3-1	ENSMUST00000216500.2|Olfr517|ENSMUSG00000066240.4|olfactory receptor 517
mm39_v1_chr7_-_106433100_106433100	0.009387177354359011	Nkx3-1	ENSMUST00000219803.2|Olfr702|ENSMUSG00000056863.6|olfactory receptor 702	ENSMUST00000208864.2|Olfr702|ENSMUSG00000056863.6|olfactory receptor 702
mm39_v1_chr15_-_11907267_11907373	0.009318123418266298	Nkx3-1	ENSMUST00000228489.2|Npr3|ENSMUSG00000022206.8|natriuretic peptide receptor 3
mm39_v1_chrY_+_57714225_57714225	0.009263858210522287	Nkx3-1	ENSMUST00000190573.2|Gm28961|ENSMUSG00000101399.2|predicted gene 28961
mm39_v1_chr1_+_160970276_160970337	0.009028705467496963	Nkx3-1	ENSMUST00000111608.8|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45	ENSMUST00000052245.9|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45
mm39_v1_chr6_-_69626340_69626388	0.00806069039662257	Nkx3-1	ENSMUST00000198328.2|Igkv4-53|ENSMUSG00000095753.3|immunoglobulin kappa variable 4-53
mm39_v1_chr7_+_126844359_126844359	0.007990131878098128	Nkx3-1	ENSMUST00000205583.2|Zfp771|ENSMUSG00000054716.5|zinc finger protein 771
mm39_v1_chr1_+_170983081_170983098	0.00777216686979812	Nkx3-1	ENSMUST00000111334.2|Mpz|ENSMUSG00000056569.12|myelin protein zero
mm39_v1_chrX_+_7786061_7786140	0.0073201137547503955	Nkx3-1	ENSMUST00000041096.4|Pcsk1n|ENSMUSG00000039278.11|proprotein convertase subtilisin/kexin type 1 inhibitor
mm39_v1_chrY_+_55728335_55728335	0.007044440423775779	Nkx3-1	ENSMUST00000185713.7|Gm21858|ENSMUSG00000095135.8|predicted gene, 21858
mm39_v1_chr12_+_101370932_101370932	0.007034698609408577	Nkx3-1	ENSMUST00000055156.5|Catsperb|ENSMUSG00000047014.8|cation channel sperm associated auxiliary subunit beta
mm39_v1_chr7_+_15484302_15484306	0.007028110255602815	Nkx3-1	ENSMUST00000098802.10|Obox5|ENSMUSG00000074366.10|oocyte specific homeobox 5	ENSMUST00000173053.2|Obox5|ENSMUSG00000074366.10|oocyte specific homeobox 5
mm39_v1_chr5_-_72716942_72717032	0.007004267641351241	Nkx3-1	ENSMUST00000074948.5|Nfxl1|ENSMUSG00000072889.10|nuclear transcription factor, X-box binding-like 1	ENSMUST00000087216.12|Nfxl1|ENSMUSG00000072889.10|nuclear transcription factor, X-box binding-like 1
mm39_v1_chr4_-_137137088_137137102	0.006842697692102142	Nkx3-1	ENSMUST00000024200.7|Cela3a|ENSMUSG00000078520.4|chymotrypsin-like elastase family, member 3A
mm39_v1_chr9_-_40873629_40873629	0.006706852192358215	Nkx3-1	ENSMUST00000160120.2|Jhy|ENSMUSG00000032023.8|junctional cadherin complex regulator
mm39_v1_chrY_-_68306157_68306167	0.006594123093970938	Nkx3-1	ENSMUST00000189084.7|Gm20937|ENSMUSG00000096016.8|predicted gene, 20937	ENSMUST00000189422.7|Gm20937|ENSMUSG00000096016.8|predicted gene, 20937
mm39_v1_chrY_+_13252391_13252442	0.006548794636310226	Nkx3-1	ENSMUST00000192749.2|Gm21440|ENSMUSG00000103468.2|predicted gene, 21440	ENSMUST00000178599.7|Gm21454|ENSMUSG00000093903.7|predicted gene, 21454
mm39_v1_chrY_+_51121799_51121799	0.006172789384050053	Nkx3-1	ENSMUST00000185327.7|Gm21117|ENSMUSG00000096769.8|predicted gene, 21117
mm39_v1_chr4_+_112470794_112470937	0.006171064976827043	Nkx3-1	ENSMUST00000058791.14|Skint2|ENSMUSG00000034359.17|selection and upkeep of intraepithelial T cells 2	ENSMUST00000186969.2|Skint2|ENSMUSG00000034359.17|selection and upkeep of intraepithelial T cells 2
mm39_v1_chrY_-_42537595_42537595	0.005570952976440438	Nkx3-1	ENSMUST00000190453.2|Gm29276|ENSMUSG00000101471.2|predicted gene 29276
mm39_v1_chrY_+_14400710_14400710	0.005568003697053142	Nkx3-1	ENSMUST00000192683.2|Gm30737|ENSMUSG00000104191.2|predicted gene, 30737
mm39_v1_chr9_+_40785277_40785423	0.005441460917707539	Nkx3-1	ENSMUST00000067375.5|Bsx|ENSMUSG00000054360.5|brain specific homeobox
mm39_v1_chr7_-_133203838_133203894	0.005321861056317553	Nkx3-1	ENSMUST00000033275.4|Tex36|ENSMUSG00000030976.4|testis expressed 36
mm39_v1_chrY_+_19113007_19113007	0.005311093825789589	Nkx3-1	ENSMUST00000194086.2|Gm35134|ENSMUSG00000103371.2|predicted gene, 35134
mm39_v1_chr7_+_102834996_102834996	0.005267242165874254	Nkx3-1	ENSMUST00000218618.2|Olfr592|ENSMUSG00000073956.4|olfactory receptor 592
mm39_v1_chr11_-_45845992_45846020	0.005115863522161949	Nkx3-1	ENSMUST00000109254.2|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chrY_+_17874741_17874741	0.005068131479390614	Nkx3-1	ENSMUST00000188928.3|Gm20772|ENSMUSG00000102739.2|predicted gene, 20772	ENSMUST00000177639.7|Gm20831|ENSMUSG00000094325.8|predicted gene, 20831
mm39_v1_chr6_-_38101503_38101530	0.005055455272492713	Nkx3-1	ENSMUST00000040259.8|Atp6v0a4|ENSMUSG00000038600.13|ATPase, H+ transporting, lysosomal V0 subunit A4
mm39_v1_chr7_+_58307930_58308041	0.004971307078532814	Nkx3-1	ENSMUST00000168747.3|Atp10a|ENSMUSG00000025324.9|ATPase, class V, type 10A
mm39_v1_chr7_-_103799746_103799768	0.004796512619658653	Nkx3-1	ENSMUST00000059121.5|Ubqlnl|ENSMUSG00000051437.5|ubiquilin-like
mm39_v1_chr15_-_103929556_103929582	0.004685200046840014	Nkx3-1	ENSMUST00000226584.2|Mucl2|ENSMUSG00000036925.9|mucin-like 2	ENSMUST00000037685.9|Mucl2|ENSMUSG00000036925.9|mucin-like 2
mm39_v1_chr4_-_137157824_137157851	0.004577711136905869	Nkx3-1	ENSMUST00000102522.5|Cela3b|ENSMUSG00000023433.9|chymotrypsin-like elastase family, member 3B
mm39_v1_chr10_-_41455203_41455203	0.004317665754357091	Nkx3-1	ENSMUST00000095227.10|Ccdc162|ENSMUSG00000075225.16|coiled-coil domain containing 162
mm39_v1_chr4_-_137493785_137493814	0.004245563456230345	Nkx3-1	ENSMUST00000139951.8|Alpl|ENSMUSG00000028766.11|alkaline phosphatase, liver/bone/kidney
mm39_v1_chr4_-_143383816_143383816	0.0042192206239086635	Nkx3-1	ENSMUST00000105771.2|Pramel22|ENSMUSG00000078513.3|PRAME like 22
mm39_v1_chr3_+_90155479_90155536	0.004002273947826767	Nkx3-1	ENSMUST00000015467.9|Slc39a1|ENSMUSG00000052310.10|solute carrier family 39 (zinc transporter), member 1
mm39_v1_chrY_-_72258387_72258387	0.0038120028172391775	Nkx3-1	ENSMUST00000191305.7|Gm20843|ENSMUSG00000096902.8|predicted gene, 20843
mm39_v1_chrY_+_89064075_89064075	0.003746604695621013	Nkx3-1	ENSMUST00000186443.2|Gm21294|ENSMUSG00000102045.2|predicted gene, 21294
mm39_v1_chr14_+_53497035_53497035	0.00367258693902603	Nkx3-1	ENSMUST00000197614.2|Trav14n-2|ENSMUSG00000093801.3|T cell receptor alpha variable 14N-2
mm39_v1_chrY_+_83042216_83042216	0.0036265889069225033	Nkx3-1	ENSMUST00000187165.2|Gm28827|ENSMUSG00000099925.2|predicted gene 28827
mm39_v1_chrY_+_80938264_80938264	0.00362658613541104	Nkx3-1	ENSMUST00000185340.2|Gm28897|ENSMUSG00000099740.2|predicted gene 28897
mm39_v1_chr4_-_156340713_156340738	0.0036121904058129505	Nkx3-1	ENSMUST00000219393.2|Samd11|ENSMUSG00000096351.3|sterile alpha motif domain containing 11
mm39_v1_chrY_+_74481800_74481800	0.0035871023586725743	Nkx3-1	ENSMUST00000189924.2|Gm29110|ENSMUSG00000101528.2|predicted gene 29110
mm39_v1_chrY_-_22046833_22046833	0.003362552288230155	Nkx3-1	ENSMUST00000192521.2|Gm31571|ENSMUSG00000103528.2|predicted gene, 31571
mm39_v1_chr13_+_21496295_21496358	0.003330176279594373	Nkx3-1	ENSMUST00000004453.9|Gpx6|ENSMUSG00000004341.9|glutathione peroxidase 6
mm39_v1_chrY_+_73680584_73680584	0.00332322707678901	Nkx3-1	ENSMUST00000189346.2|Gm20903|ENSMUSG00000099782.2|predicted gene, 20903
mm39_v1_chr13_+_49806772_49806846	0.0032913902680768944	Nkx3-1	ENSMUST00000223264.2|Nol8|ENSMUSG00000021392.9|nucleolar protein 8	ENSMUST00000221142.2|Nol8|ENSMUSG00000021392.9|nucleolar protein 8	ENSMUST00000222333.2|Nol8|ENSMUSG00000021392.9|nucleolar protein 8	ENSMUST00000021824.8|Nol8|ENSMUSG00000021392.9|nucleolar protein 8
mm39_v1_chr12_-_33142858_33142902	0.003287074760009416	Nkx3-1	ENSMUST00000095774.3|Cdhr3|ENSMUSG00000035860.10|cadherin-related family member 3
mm39_v1_chr9_-_4796217_4796267	0.003244893293819404	Nkx3-1	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr2_-_84605764_84605788	0.0032422930733247233	Nkx3-1	ENSMUST00000111641.2|Serping1|ENSMUSG00000023224.13|serine (or cysteine) peptidase inhibitor, clade G, member 1
mm39_v1_chrY_+_78224262_78224262	0.0032111352707338103	Nkx3-1	ENSMUST00000185575.2|Gm29564|ENSMUSG00000099792.2|predicted gene 29564
mm39_v1_chrY_+_80145048_80145048	0.0032111274999470168	Nkx3-1	ENSMUST00000187433.7|Gm21760|ENSMUSG00000095578.8|predicted gene, 21760
mm39_v1_chr2_-_27032441_27032503	0.0031783922791834254	Nkx3-1	ENSMUST00000151224.3|Fam163b|ENSMUSG00000009216.8|family with sequence similarity 163, member B
mm39_v1_chr2_+_25293056_25293127	0.0031741608382566903	Nkx3-1	ENSMUST00000071442.12|Npdc1|ENSMUSG00000015094.17|neural proliferation, differentiation and control 1
mm39_v1_chrY_+_88064584_88064584	0.003169950634742094	Nkx3-1	ENSMUST00000187146.2|Gm28102|ENSMUSG00000101915.2|predicted gene 28102
mm39_v1_chr3_-_92659644_92659646	0.0030847194133924337	Nkx3-1	ENSMUST00000029527.6|Lce1g|ENSMUSG00000027919.6|late cornified envelope 1G
mm39_v1_chrY_+_81469276_81469276	0.0030223155895840507	Nkx3-1	ENSMUST00000187135.2|Gm20911|ENSMUSG00000099894.2|predicted gene, 20911
mm39_v1_chr7_+_102351422_102351422	0.003016632625043023	Nkx3-1	ENSMUST00000094124.5|Olfr558|ENSMUSG00000070423.7|olfactory receptor 558
mm39_v1_chr5_-_145521533_145521540	0.0029995158972467412	Nkx3-1	ENSMUST00000075837.8|Cyp3a41b|ENSMUSG00000075552.5|cytochrome P450, family 3, subfamily a, polypeptide 41B
mm39_v1_chrY_+_71703312_71703312	0.002973043453674654	Nkx3-1	ENSMUST00000189315.2|Gm20870|ENSMUSG00000100535.2|predicted gene, 20870
mm39_v1_chrY_+_50604830_50604830	0.0029730323607538457	Nkx3-1	ENSMUST00000185245.2|Gm20883|ENSMUSG00000102122.2|predicted gene, 20883
mm39_v1_chrY_-_35087178_35087178	0.002932696035881601	Nkx3-1	ENSMUST00000186996.7|Gm20855|ENSMUSG00000095793.8|predicted gene, 20855
mm39_v1_chrY_+_87128072_87128090	0.002932690283414121	Nkx3-1	ENSMUST00000189543.7|Gm21477|ENSMUSG00000094399.8|predicted gene, 21477
mm39_v1_chrY_+_71480718_71480718	0.0029326736182487463	Nkx3-1	ENSMUST00000188958.2|Gm20869|ENSMUSG00000099531.2|predicted gene, 20869
mm39_v1_chrY_-_28226857_28226857	0.002895682835807682	Nkx3-1	ENSMUST00000188864.2|Gm20894|ENSMUSG00000101158.2|predicted gene, 20894
mm39_v1_chr5_-_24732200_24732200	0.0028731475453969988	Nkx3-1	ENSMUST00000088311.6|Gbx1|ENSMUSG00000067724.6|gastrulation brain homeobox 1
mm39_v1_chrY_+_63236955_63236955	0.002828851899820333	Nkx3-1	ENSMUST00000187768.2|Gm21627|ENSMUSG00000100856.2|predicted gene, 21627
mm39_v1_chrY_+_86073041_86073041	0.002779959120602837	Nkx3-1	ENSMUST00000188754.2|Gm20820|ENSMUSG00000100240.2|predicted gene, 20820
mm39_v1_chrY_+_7722941_7722941	0.0026919502137022046	Nkx3-1	ENSMUST00000189007.2|Gm28576|ENSMUSG00000100645.2|predicted gene 28576
mm39_v1_chrY_+_77704077_77704077	0.002679886789426566	Nkx3-1	ENSMUST00000190551.7|Gm21650|ENSMUSG00000094647.8|predicted gene, 21650
mm39_v1_chr6_-_83504471_83504482	0.0026735260424613104	Nkx3-1	ENSMUST00000141904.8|Actg2|ENSMUSG00000059430.15|actin, gamma 2, smooth muscle, enteric
mm39_v1_chrY_+_51848699_51848699	0.002657295433861835	Nkx3-1	ENSMUST00000187477.2|Gm20920|ENSMUSG00000100485.2|predicted gene, 20920
mm39_v1_chrY_+_64481794_64481794	0.002657295433861835	Nkx3-1	ENSMUST00000186004.2|Gm20908|ENSMUSG00000101766.2|predicted gene, 20908
mm39_v1_chrY_-_22856736_22856736	0.0026433662194780693	Nkx3-1	ENSMUST00000192892.2|Gm21366|ENSMUSG00000103919.2|predicted gene, 21366
mm39_v1_chrY_+_82236496_82236496	0.002643362544579006	Nkx3-1	ENSMUST00000185636.2|Gm21317|ENSMUSG00000101286.2|predicted gene, 21317
mm39_v1_chrY_+_53840528_53840528	0.0026433618095991927	Nkx3-1	ENSMUST00000186578.2|Gm20929|ENSMUSG00000100045.2|predicted gene, 20929
mm39_v1_chrY_+_87562235_87562235	0.002643354214698951	Nkx3-1	ENSMUST00000186493.2|Gm20906|ENSMUSG00000099856.2|predicted gene, 20906
mm39_v1_chrY_-_35876871_35876871	0.002627000441073169	Nkx3-1	ENSMUST00000188585.7|Gm20896|ENSMUSG00000096650.8|predicted gene, 20896
mm39_v1_chrY_+_52776619_52776619	0.002585746207230991	Nkx3-1	ENSMUST00000191553.7|Gm21258|ENSMUSG00000095606.8|predicted gene, 21258
mm39_v1_chrY_-_26732144_26732144	0.0025560761438432715	Nkx3-1	ENSMUST00000189518.2|Gm20890|ENSMUSG00000100055.2|predicted gene, 20890
mm39_v1_chrY_-_27477265_27477265	0.0025560761438432715	Nkx3-1	ENSMUST00000188744.2|Gm21488|ENSMUSG00000099541.2|predicted gene, 21488
mm39_v1_chr1_+_160970233_160970272	0.0025529367629388766	Nkx3-1	ENSMUST00000125018.8|Ankrd45|ENSMUSG00000044835.16|ankyrin repeat domain 45
mm39_v1_chrY_-_36690635_36690635	0.002514975897013903	Nkx3-1	ENSMUST00000185565.2|Gm20835|ENSMUSG00000101933.2|predicted gene, 20835
mm39_v1_chrY_-_37214948_37214948	0.002514975897013903	Nkx3-1	ENSMUST00000190782.2|Gm20905|ENSMUSG00000101157.2|predicted gene, 20905
mm39_v1_chrY_-_20993657_20993657	0.0024280879312714634	Nkx3-1	ENSMUST00000191675.2|Gm29866|ENSMUSG00000102668.2|predicted gene, 29866
mm39_v1_chrY_+_49567735_49567735	0.0024230406234420103	Nkx3-1	ENSMUST00000189354.7|Gm21209|ENSMUSG00000095979.8|predicted gene, 21209
mm39_v1_chrY_+_62199394_62199394	0.0024230406234420103	Nkx3-1	ENSMUST00000186938.7|Gm21518|ENSMUSG00000094821.8|predicted gene, 21518
mm39_v1_chr1_+_106908709_106908715	0.0024137349743333755	Nkx3-1	ENSMUST00000027564.8|Serpinb13|ENSMUSG00000048775.11|serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13
mm39_v1_chrY_+_7253787_7253787	0.0023888890831264935	Nkx3-1	ENSMUST00000186194.2|Gm28998|ENSMUSG00000100939.2|predicted gene 28998
mm39_v1_chr1_+_99700490_99700490	0.0023669948438172395	Nkx3-1	ENSMUST00000086738.10|Cntnap5b|ENSMUSG00000067028.12|contactin associated protein-like 5B
mm39_v1_chrY_+_48861106_48861106	0.0023373957976152823	Nkx3-1	ENSMUST00000185924.2|Gm28553|ENSMUSG00000100972.2|predicted gene 28553
mm39_v1_chrX_-_72080709_72080709	0.0023258256291774685	Nkx3-1	ENSMUST00000114540.4|Pnma5|ENSMUSG00000050424.10|paraneoplastic antigen family 5	ENSMUST00000051569.7|Pnma5|ENSMUSG00000050424.10|paraneoplastic antigen family 5
mm39_v1_chrY_+_55210299_55210299	0.0023211417551284785	Nkx3-1	ENSMUST00000187293.7|Gm20931|ENSMUSG00000094570.8|predicted gene, 20931
mm39_v1_chrY_+_75207125_75207125	0.0023211398617468473	Nkx3-1	ENSMUST00000190173.2|Gm20814|ENSMUSG00000101146.2|predicted gene, 20814
mm39_v1_chrY_+_70453151_70453151	0.002302696879123046	Nkx3-1	ENSMUST00000186890.7|Gm20888|ENSMUSG00000094616.8|predicted gene, 20888
mm39_v1_chrY_+_75726591_75726591	0.002298504246875521	Nkx3-1	ENSMUST00000188672.2|Gm20850|ENSMUSG00000100902.2|predicted gene, 20850
mm39_v1_chrY_+_79330834_79330834	0.002277942269030136	Nkx3-1	ENSMUST00000185338.7|Gm20916|ENSMUSG00000094746.8|predicted gene, 20916
mm39_v1_chrY_+_61655274_61655274	0.002209256847690201	Nkx3-1	ENSMUST00000189455.2|Gm21497|ENSMUSG00000100726.2|predicted gene, 21497
mm39_v1_chrY_-_68843997_68843997	0.0021925029944700218	Nkx3-1	ENSMUST00000191123.2|Gm20817|ENSMUSG00000100032.2|predicted gene, 20817
mm39_v1_chrY_+_76772869_76772869	0.0021925015458495556	Nkx3-1	ENSMUST00000189238.2|Gm21173|ENSMUSG00000100708.2|predicted gene, 21173
mm39_v1_chr2_-_121381832_121381861	0.0020572095750631485	Nkx3-1	ENSMUST00000212518.2|Frmd5|ENSMUSG00000027238.18|FERM domain containing 5
mm39_v1_chrY_+_84757954_84757954	0.00199396629412764	Nkx3-1	ENSMUST00000186110.2|Gm21409|ENSMUSG00000099840.2|predicted gene, 21409
mm39_v1_chrY_+_8257907_8257907	0.001959539518037733	Nkx3-1	ENSMUST00000186739.2|Gm20824|ENSMUSG00000101928.2|predicted gene, 20824
mm39_v1_chr5_-_145656934_145656946	0.0019459858514247225	Nkx3-1	ENSMUST00000094111.6|Cyp3a41a|ENSMUSG00000075551.5|cytochrome P450, family 3, subfamily a, polypeptide 41A
mm39_v1_chr5_-_145742672_145742686	0.001863197513186693	Nkx3-1	ENSMUST00000067479.6|Cyp3a44|ENSMUSG00000054417.6|cytochrome P450, family 3, subfamily a, polypeptide 44
mm39_v1_chr12_-_103660946_103660975	0.0018589117523058595	Nkx3-1	ENSMUST00000118101.2|Serpina1f|ENSMUSG00000021081.13|serine (or cysteine) peptidase inhibitor, clade A, member 1F
mm39_v1_chr2_-_88887708_88887708	0.0016704182248447053	Nkx3-1	ENSMUST00000213609.3|Olfr1218|ENSMUSG00000075105.4|olfactory receptor 1218
mm39_v1_chrY_-_38457583_38457583	0.001612721579468407	Nkx3-1	ENSMUST00000185240.2|Gm20897|ENSMUSG00000100892.2|predicted gene, 20897
mm39_v1_chrY_+_84108548_84108548	0.0015966841475337941	Nkx3-1	ENSMUST00000185776.7|Gm21095|ENSMUSG00000095153.8|predicted gene, 21095
mm39_v1_chr18_+_37106851_37106870	0.0015946651593164484	Nkx3-1	ENSMUST00000192631.2|Pcdha7|ENSMUSG00000104318.2|protocadherin alpha 7
mm39_v1_chr7_+_86312872_86312872	0.001566210341425916	Nkx3-1	ENSMUST00000081474.2|Olfr293|ENSMUSG00000063394.4|olfactory receptor 293
mm39_v1_chr3_-_54962922_54962940	0.00148528855584074	Nkx3-1	ENSMUST00000197238.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr7_-_48145873_48145873	0.001370219919779116	Nkx3-1	ENSMUST00000186394.2|Mrgprx2|ENSMUSG00000074109.5|MAS-related GPR, member X2
mm39_v1_chrY_-_10536042_10536042	0.0013126003678160278	Nkx3-1	ENSMUST00000187245.2|Gm20737|ENSMUSG00000095950.3|predicted gene, 20737
mm39_v1_chr4_-_115353326_115353344	0.0013053261215260953	Nkx3-1	ENSMUST00000030487.3|Cyp4a14|ENSMUSG00000028715.3|cytochrome P450, family 4, subfamily a, polypeptide 14
mm39_v1_chr9_+_78235312_78235336	0.0011912947231909443	Nkx3-1	ENSMUST00000043734.12|Omt2b|ENSMUSG00000038750.13|oocyte maturation, beta	ENSMUST00000186336.2|Omt2b|ENSMUSG00000038750.13|oocyte maturation, beta
mm39_v1_chr14_+_64331130_64331186	0.001050864506983357	Nkx3-1	ENSMUST00000224112.2|Prss51|ENSMUSG00000052099.15|protease, serine 51	ENSMUST00000165710.2|Prss51|ENSMUSG00000052099.15|protease, serine 51	ENSMUST00000170709.2|Prss51|ENSMUSG00000052099.15|protease, serine 51
mm39_v1_chrY_-_1459771_1459785	0.0010148482838688894	Nkx3-1	ENSMUST00000091188.7|Usp9y|ENSMUSG00000069044.7|ubiquitin specific peptidase 9, Y chromosome
mm39_v1_chr1_-_192717958_192718036	0.0008277510272331879	Nkx3-1	ENSMUST00000016344.9|Syt14|ENSMUSG00000016200.15|synaptotagmin XIV
mm39_v1_chr1_-_53336160_53336182	0.0006363707582985473	Nkx3-1	ENSMUST00000126590.2|Pms1|ENSMUSG00000026098.14|PMS1 homolog 1, mismatch repair system component	ENSMUST00000126412.2|Pms1|ENSMUSG00000026098.14|PMS1 homolog 1, mismatch repair system component	ENSMUST00000135246.8|Pms1|ENSMUSG00000026098.14|PMS1 homolog 1, mismatch repair system component	ENSMUST00000027267.14|Pms1|ENSMUSG00000026098.14|PMS1 homolog 1, mismatch repair system component
mm39_v1_chr10_-_62322356_62322382	0.0005992339595649092	Nkx3-1	ENSMUST00000092473.5|Vps26a|ENSMUSG00000020078.17|VPS26 retromer complex component A
mm39_v1_chr13_-_41981893_41981929	0.0005912299366398955	Nkx3-1	ENSMUST00000137905.2|Adtrp|ENSMUSG00000058022.15|androgen dependent TFPI regulating protein
mm39_v1_chr2_+_139335829_139335844	0.00047241771918732546	Nkx3-1	ENSMUST00000110083.8|Sptlc3|ENSMUSG00000039092.10|serine palmitoyltransferase, long chain base subunit 3	ENSMUST00000047370.3|Sptlc3|ENSMUSG00000039092.10|serine palmitoyltransferase, long chain base subunit 3
mm39_v1_chrX_-_159689993_159690048	0.00042610808604523254	Nkx3-1	ENSMUST00000069417.6|Gja6|ENSMUSG00000055691.6|gap junction protein, alpha 6
mm39_v1_chr3_-_92686198_92686215	0.0003968325960261518	Nkx3-1	ENSMUST00000090866.2|Lce1i|ENSMUSG00000068888.4|late cornified envelope 1I
mm39_v1_chr16_-_58647137_58647145	0.0003526519503828843	Nkx3-1	ENSMUST00000215069.2|Olfr175|ENSMUSG00000060663.7|olfactory receptor 175	ENSMUST00000079955.6|Olfr175|ENSMUSG00000060663.7|olfactory receptor 175
mm39_v1_chr7_+_48038274_48038274	0.0003405978677311122	Nkx3-1	ENSMUST00000056676.5|Mrgprb8|ENSMUSG00000050870.5|MAS-related GPR, member B8
mm39_v1_chr1_-_174749379_174749393	0.00026180875138192585	Nkx3-1	ENSMUST00000055294.4|Grem2|ENSMUSG00000050069.4|gremlin 2, DAN family BMP antagonist
mm39_v1_chr1_+_40468720_40468746	0.00010805667797939417	Nkx3-1	ENSMUST00000174335.8|Il1rl1|ENSMUSG00000026069.16|interleukin 1 receptor-like 1
mm39_v1_chr14_+_53497357_53497357	0.0001050284144217019	Nkx3-1	ENSMUST00000103623.3|Trav14n-2|ENSMUSG00000093801.3|T cell receptor alpha variable 14N-2
mm39_v1_chrY_+_18089116_18089116	1.3708809803723403e-06	Nkx3-1	ENSMUST00000186035.2|Ssty1|ENSMUSG00000095267.3|spermiogenesis specific transcript on the Y 1
