mm39_v1_chr17_-_28128180_28128239	0.39653848436928624	Pax1_Pax9	ENSMUST00000114848.8|Taf11|ENSMUSG00000024218.14|TATA-box binding protein associated factor 11
mm39_v1_chr8_+_31640332_31640376	0.3228775782201296	Pax1_Pax9	ENSMUST00000209851.2|Tti2|ENSMUSG00000031577.11|TELO2 interacting protein 2	ENSMUST00000098842.3|Tti2|ENSMUSG00000031577.11|TELO2 interacting protein 2	ENSMUST00000210129.2|Tti2|ENSMUSG00000031577.11|TELO2 interacting protein 2
mm39_v1_chr17_-_75858835_75858941	0.31669637083414204	Pax1_Pax9	ENSMUST00000234785.2|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A	ENSMUST00000112507.4|Fam98a|ENSMUSG00000002017.11|family with sequence similarity 98, member A
mm39_v1_chr7_-_23998735_23998793	0.24614221728371857	Pax1_Pax9	ENSMUST00000145131.8|Zfp61|ENSMUSG00000050605.18|zinc finger protein 61
mm39_v1_chr5_+_129864044_129864123	0.21025434787238667	Pax1_Pax9	ENSMUST00000201414.5|Cct6a|ENSMUSG00000029447.14|chaperonin containing Tcp1, subunit 6a (zeta)
mm39_v1_chr8_-_95564881_95564986	0.17491621965578036	Pax1_Pax9	ENSMUST00000034233.15|Ciapin1|ENSMUSG00000031781.15|cytokine induced apoptosis inhibitor 1	ENSMUST00000162538.9|Ciapin1|ENSMUSG00000031781.15|cytokine induced apoptosis inhibitor 1
mm39_v1_chr5_-_31448370_31448488	0.15416079789518938	Pax1_Pax9	ENSMUST00000041565.11|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172	ENSMUST00000201809.2|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172
mm39_v1_chr4_+_11558905_11558979	0.1522971210076854	Pax1_Pax9	ENSMUST00000095145.12|Rad54b|ENSMUSG00000078773.12|RAD54 homolog B (S. cerevisiae)	ENSMUST00000108306.9|Rad54b|ENSMUSG00000078773.12|RAD54 homolog B (S. cerevisiae)	ENSMUST00000070755.13|Rad54b|ENSMUSG00000078773.12|RAD54 homolog B (S. cerevisiae)
mm39_v1_chr7_+_48438751_48438808	0.1454205969646684	Pax1_Pax9	ENSMUST00000118927.8|Zdhhc13|ENSMUSG00000030471.18|zinc finger, DHHC domain containing 13	ENSMUST00000125280.8|Zdhhc13|ENSMUSG00000030471.18|zinc finger, DHHC domain containing 13
mm39_v1_chr2_-_62242562_62242581	0.11578837714991558	Pax1_Pax9	ENSMUST00000047812.8|Dpp4|ENSMUSG00000035000.9|dipeptidylpeptidase 4
mm39_v1_chr17_+_28128307_28128532	0.08765611407146266	Pax1_Pax9	ENSMUST00000233525.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000025058.15|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000233866.2|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr17_+_28128250_28128301	0.0841384835364765	Pax1_Pax9	ENSMUST00000114842.9|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1	ENSMUST00000088027.7|Anks1|ENSMUSG00000024219.17|ankyrin repeat and SAM domain containing 1
mm39_v1_chr18_+_69477541_69477601	0.07910319089020007	Pax1_Pax9	ENSMUST00000114985.10|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000128706.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201781.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202674.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr9_+_21249118_21249155	0.07649956358273814	Pax1_Pax9	ENSMUST00000034697.8|Slc44a2|ENSMUSG00000057193.9|solute carrier family 44, member 2
mm39_v1_chr1_+_87683592_87683839	0.07381778445800262	Pax1_Pax9	ENSMUST00000144047.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000027512.13|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113186.8|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)	ENSMUST00000113190.3|Atg16l1|ENSMUSG00000026289.16|autophagy related 16-like 1 (S. cerevisiae)
mm39_v1_chr13_-_62668265_62668265	0.059777781213571426	Pax1_Pax9	ENSMUST00000082203.7|Zfp934|ENSMUSG00000074865.12|zinc finger protein 934
mm39_v1_chr8_+_95564949_95565055	0.05960218249674084	Pax1_Pax9	ENSMUST00000034234.15|Coq9|ENSMUSG00000031782.16|coenzyme Q9	ENSMUST00000159871.4|Coq9|ENSMUSG00000031782.16|coenzyme Q9
mm39_v1_chr9_-_96993169_96993214	0.04832203662098923	Pax1_Pax9	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr9_+_96078299_96078333	0.03983593920252119	Pax1_Pax9	ENSMUST00000165120.9|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr2_+_84564394_84564451	0.038239353412407896	Pax1_Pax9	ENSMUST00000238573.2|Ypel4|ENSMUSG00000034059.15|yippee like 4	ENSMUST00000090729.9|Ypel4|ENSMUSG00000034059.15|yippee like 4
mm39_v1_chr19_-_6973393_6973485	0.03673309106958176	Pax1_Pax9	ENSMUST00000041686.10|Nudt22|ENSMUSG00000037349.10|nudix (nucleoside diphosphate linked moiety X)-type motif 22	ENSMUST00000180765.2|Nudt22|ENSMUSG00000037349.10|nudix (nucleoside diphosphate linked moiety X)-type motif 22
mm39_v1_chr14_+_31058589_31058676	0.029148354426362898	Pax1_Pax9	ENSMUST00000022451.14|Capn7|ENSMUSG00000021893.15|calpain 7
mm39_v1_chr5_-_129864202_129864237	0.02039642839425426	Pax1_Pax9	ENSMUST00000136507.4|Psph|ENSMUSG00000029446.15|phosphoserine phosphatase
mm39_v1_chr2_-_111100733_111100733	0.016885670470249203	Pax1_Pax9	ENSMUST00000099619.6|Olfr1277|ENSMUSG00000074965.6|olfactory receptor 1277
mm39_v1_chr4_-_117232650_117232663	0.013192608755607042	Pax1_Pax9	ENSMUST00000094853.9|Rnf220|ENSMUSG00000028677.20|ring finger protein 220
mm39_v1_chr2_+_177834868_177834890	0.012640334079283192	Pax1_Pax9	ENSMUST00000103065.2|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr10_+_75409282_75409299	0.011441898121015488	Pax1_Pax9	ENSMUST00000006508.10|Ggt1|ENSMUSG00000006345.11|gamma-glutamyltransferase 1
mm39_v1_chr2_+_85612365_85612365	0.011299182944953716	Pax1_Pax9	ENSMUST00000215945.2|Olfr1015|ENSMUSG00000033850.6|olfactory receptor 1015
mm39_v1_chr9_-_22300409_22300490	0.011171113484852583	Pax1_Pax9	ENSMUST00000040912.9|Anln|ENSMUSG00000036777.9|anillin, actin binding protein
mm39_v1_chrX_+_73356597_73356731	0.010737009772371757	Pax1_Pax9	ENSMUST00000114160.2|Fam50a|ENSMUSG00000001962.9|family with sequence similarity 50, member A
mm39_v1_chr5_+_112403678_112403740	0.007289123793808708	Pax1_Pax9	ENSMUST00000031286.13|Crybb1|ENSMUSG00000029343.18|crystallin, beta B1	ENSMUST00000131673.8|Crybb1|ENSMUSG00000029343.18|crystallin, beta B1	ENSMUST00000112375.2|Crybb1|ENSMUSG00000029343.18|crystallin, beta B1
mm39_v1_chr14_+_32938774_32938860	0.006010901873930121	Pax1_Pax9	ENSMUST00000111956.9|Arhgap22|ENSMUSG00000063506.15|Rho GTPase activating protein 22
mm39_v1_chr19_+_13140364_13140364	0.0030923818615627785	Pax1_Pax9	ENSMUST00000207113.3|Olfr1461|ENSMUSG00000045883.6|olfactory receptor 1461
mm39_v1_chr7_+_118232952_118232973	0.0026208735706630764	Pax1_Pax9	ENSMUST00000057320.8|Tmc5|ENSMUSG00000030650.19|transmembrane channel-like gene family 5
mm39_v1_chr17_-_45912993_45913012	0.001605071886713837	Pax1_Pax9	ENSMUST00000178858.3|Mymx|ENSMUSG00000079471.5|myomixer, myoblast fusion factor
