mm39_v1_chr4_-_43031370_43031456	1.5151299497410016	Rfx3_Rfx1_Rfx4	ENSMUST00000138030.2|Stoml2|ENSMUSG00000028455.16|stomatin (Epb7.2)-like 2	ENSMUST00000136326.8|Stoml2|ENSMUSG00000028455.16|stomatin (Epb7.2)-like 2
mm39_v1_chr11_+_87651359_87651413	0.8602831924589094	Rfx3_Rfx1_Rfx4	ENSMUST00000039627.12|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1	ENSMUST00000100644.10|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1
mm39_v1_chr4_-_94940425_94940459	0.8412950375481948	Rfx3_Rfx1_Rfx4	ENSMUST00000107094.2|Jun|ENSMUSG00000052684.5|jun proto-oncogene
mm39_v1_chr5_-_137529251_137529349	0.6291065791822447	Rfx3_Rfx1_Rfx4	ENSMUST00000132525.8|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr10_+_61431271_61431271	0.6232919868787543	Rfx3_Rfx1_Rfx4	ENSMUST00000020287.8|Npffr1|ENSMUSG00000020090.8|neuropeptide FF receptor 1
mm39_v1_chr5_-_137074880_137074989	0.6089026610156325	Rfx3_Rfx1_Rfx4	ENSMUST00000144303.2|Ap1s1|ENSMUSG00000004849.15|adaptor protein complex AP-1, sigma 1	ENSMUST00000111080.8|Ap1s1|ENSMUSG00000004849.15|adaptor protein complex AP-1, sigma 1
mm39_v1_chr17_-_35055843_35055935	0.5971859109678481	Rfx3_Rfx1_Rfx4	ENSMUST00000077477.12|Stk19|ENSMUSG00000061207.12|serine/threonine kinase 19
mm39_v1_chr2_-_91274967_91275071	0.5523033811055617	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.14|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene	ENSMUST00000102594.11|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene	ENSMUST00000094835.9|1110051M20Rik|ENSMUSG00000040591.19|RIKEN cDNA 1110051M20 gene
mm39_v1_chr15_-_78947038_78947142	0.5260484354585311	Rfx3_Rfx1_Rfx4	ENSMUST00000151889.8|Ankrd54|ENSMUSG00000033055.13|ankyrin repeat domain 54	ENSMUST00000040676.11|Ankrd54|ENSMUSG00000033055.13|ankyrin repeat domain 54
mm39_v1_chr14_+_51193449_51193626	0.5200531533785947	Rfx3_Rfx1_Rfx4	ENSMUST00000095925.5|Pnp2|ENSMUSG00000068417.9|purine-nucleoside phosphorylase 2
mm39_v1_chr4_-_133694607_133694752	0.5181517003673398	Rfx3_Rfx1_Rfx4	ENSMUST00000105893.8|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr2_+_80145805_80145855	0.5161762661360522	Rfx3_Rfx1_Rfx4	ENSMUST00000028392.8|Dnajc10|ENSMUSG00000027006.14|DnaJ heat shock protein family (Hsp40) member C10
mm39_v1_chr9_+_107926502_107926537	0.4721906739968538	Rfx3_Rfx1_Rfx4	ENSMUST00000047947.9|Gmppb|ENSMUSG00000070284.11|GDP-mannose pyrophosphorylase B
mm39_v1_chr5_-_137529465_137529559	0.4719979120581491	Rfx3_Rfx1_Rfx4	ENSMUST00000150063.9|Gnb2|ENSMUSG00000029713.16|guanine nucleotide binding protein (G protein), beta 2
mm39_v1_chr7_+_18910340_18910365	0.45053853869967886	Rfx3_Rfx1_Rfx4	ENSMUST00000117338.8|Eml2|ENSMUSG00000040811.16|echinoderm microtubule associated protein like 2
mm39_v1_chr4_-_129556234_129556282	0.4487642870093618	Rfx3_Rfx1_Rfx4	ENSMUST00000003828.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr7_+_18883647_18883769	0.44098129654242063	Rfx3_Rfx1_Rfx4	ENSMUST00000049294.4|Snrpd2|ENSMUSG00000040824.4|small nuclear ribonucleoprotein D2
mm39_v1_chr6_+_88061464_88061509	0.43442950571223554	Rfx3_Rfx1_Rfx4	ENSMUST00000032143.8|Rpn1|ENSMUSG00000030062.8|ribophorin I
mm39_v1_chr3_-_146476331_146476536	0.4314365710805279	Rfx3_Rfx1_Rfx4	ENSMUST00000106138.8|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr2_+_29678248_29678314	0.4270919888995675	Rfx3_Rfx1_Rfx4	ENSMUST00000028137.10|Coq4|ENSMUSG00000026798.11|coenzyme Q4	ENSMUST00000148791.2|Coq4|ENSMUSG00000026798.11|coenzyme Q4
mm39_v1_chr8_-_123939480_123939539	0.42687257382267696	Rfx3_Rfx1_Rfx4	ENSMUST00000000759.9|Chmp1a|ENSMUSG00000000743.10|charged multivesicular body protein 1A
mm39_v1_chr3_-_146475974_146476016	0.4226361588241741	Rfx3_Rfx1_Rfx4	ENSMUST00000106137.8|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr17_-_46558894_46558980	0.419399937748897	Rfx3_Rfx1_Rfx4	ENSMUST00000142706.9|Polr1c|ENSMUSG00000067148.16|polymerase (RNA) I polypeptide C	ENSMUST00000173349.8|Polr1c|ENSMUSG00000067148.16|polymerase (RNA) I polypeptide C	ENSMUST00000087026.13|Polr1c|ENSMUSG00000067148.16|polymerase (RNA) I polypeptide C
mm39_v1_chr3_+_103875574_103875762	0.4187310101489766	Rfx3_Rfx1_Rfx4	ENSMUST00000063717.14|Phtf1|ENSMUSG00000058388.15|putative homeodomain transcription factor 1	ENSMUST00000055425.15|Phtf1|ENSMUSG00000058388.15|putative homeodomain transcription factor 1	ENSMUST00000123611.8|Phtf1|ENSMUSG00000058388.15|putative homeodomain transcription factor 1	ENSMUST00000090685.11|Phtf1|ENSMUSG00000058388.15|putative homeodomain transcription factor 1
mm39_v1_chr9_-_60594742_60594955	0.41588397435933433	Rfx3_Rfx1_Rfx4	ENSMUST00000114032.8|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49	ENSMUST00000166168.8|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49	ENSMUST00000132366.2|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49
mm39_v1_chr2_-_29938841_29938903	0.41170330917206927	Rfx3_Rfx1_Rfx4	ENSMUST00000113711.3|Dync2i2|ENSMUSG00000039715.9|dynein 2 intermediate chain 2
mm39_v1_chr17_-_80514725_80514741	0.4033131174419607	Rfx3_Rfx1_Rfx4	ENSMUST00000234696.2|Srsf7|ENSMUSG00000024097.12|serine and arginine-rich splicing factor 7	ENSMUST00000235069.2|Srsf7|ENSMUSG00000024097.12|serine and arginine-rich splicing factor 7	ENSMUST00000063417.11|Srsf7|ENSMUSG00000024097.12|serine and arginine-rich splicing factor 7
mm39_v1_chr5_+_137756407_137756461	0.40283352316252874	Rfx3_Rfx1_Rfx4	ENSMUST00000141733.8|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4	ENSMUST00000110985.2|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4
mm39_v1_chr10_-_116899664_116899719	0.40228441877718224	Rfx3_Rfx1_Rfx4	ENSMUST00000218719.2|Cct2|ENSMUSG00000034024.9|chaperonin containing Tcp1, subunit 2 (beta)	ENSMUST00000219573.2|Cct2|ENSMUSG00000034024.9|chaperonin containing Tcp1, subunit 2 (beta)	ENSMUST00000047672.9|Cct2|ENSMUSG00000034024.9|chaperonin containing Tcp1, subunit 2 (beta)
mm39_v1_chr7_-_4687916_4688067	0.40108600479188417	Rfx3_Rfx1_Rfx4	ENSMUST00000206306.2|Hspbp1|ENSMUSG00000063802.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	ENSMUST00000205952.2|Hspbp1|ENSMUSG00000063802.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	ENSMUST00000079970.6|Hspbp1|ENSMUSG00000063802.6|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm39_v1_chr7_-_45480200_45480368	0.39909087314646047	Rfx3_Rfx1_Rfx4	ENSMUST00000107723.9|Grwd1|ENSMUSG00000053801.19|glutamate-rich WD repeat containing 1	ENSMUST00000131384.3|Grwd1|ENSMUSG00000053801.19|glutamate-rich WD repeat containing 1
mm39_v1_chr8_-_65186565_65186588	0.3974032259815412	Rfx3_Rfx1_Rfx4	ENSMUST00000141021.2|Msmo1|ENSMUSG00000031604.11|methylsterol monoxygenase 1
mm39_v1_chr15_+_79543397_79543468	0.39540491160786295	Rfx3_Rfx1_Rfx4	ENSMUST00000023064.9|Cby1|ENSMUSG00000022428.9|chibby family member 1, beta catenin antagonist
mm39_v1_chr17_+_35055962_35056024	0.3906467111953887	Rfx3_Rfx1_Rfx4	ENSMUST00000173874.8|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease	ENSMUST00000180043.8|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease	ENSMUST00000046244.15|Dxo|ENSMUSG00000040482.17|decapping exoribonuclease
mm39_v1_chr2_-_127630769_127630820	0.38705761937885746	Rfx3_Rfx1_Rfx4	ENSMUST00000028857.14|Nphp1|ENSMUSG00000027378.17|nephronophthisis 1 (juvenile) homolog (human)	ENSMUST00000110357.2|Nphp1|ENSMUSG00000027378.17|nephronophthisis 1 (juvenile) homolog (human)
mm39_v1_chr12_+_82216193_82216220	0.3828235420567209	Rfx3_Rfx1_Rfx4	ENSMUST00000166429.9|Sipa1l1|ENSMUSG00000042700.17|signal-induced proliferation-associated 1 like 1	ENSMUST00000220963.2|Sipa1l1|ENSMUSG00000042700.17|signal-induced proliferation-associated 1 like 1
mm39_v1_chr19_+_45549009_45549086	0.38280015515579835	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.9|Gm17018|ENSMUSG00000041035.10|predicted gene 17018
mm39_v1_chr5_-_115438971_115439003	0.38120524933898825	Rfx3_Rfx1_Rfx4	ENSMUST00000112090.2|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr5_-_41865461_41865472	0.37588362547807436	Rfx3_Rfx1_Rfx4	ENSMUST00000201422.4|Rab28|ENSMUSG00000029128.13|RAB28, member RAS oncogene family
mm39_v1_chr1_-_156501860_156501926	0.3753025078011475	Rfx3_Rfx1_Rfx4	ENSMUST00000188964.7|Tor3a|ENSMUSG00000060519.12|torsin family 3, member A	ENSMUST00000190607.2|Tor3a|ENSMUSG00000060519.12|torsin family 3, member A	ENSMUST00000079625.11|Tor3a|ENSMUSG00000060519.12|torsin family 3, member A
mm39_v1_chr11_-_119190830_119190860	0.37174381130529355	Rfx3_Rfx1_Rfx4	ENSMUST00000106253.2|Eif4a3|ENSMUSG00000025580.16|eukaryotic translation initiation factor 4A3
mm39_v1_chr14_+_51181956_51181974	0.3712082983968852	Rfx3_Rfx1_Rfx4	ENSMUST00000178092.2|Pnp|ENSMUSG00000115338.3|purine-nucleoside phosphorylase	ENSMUST00000227052.2|Gm49342|ENSMUSG00000021871.20|predicted gene, 49342
mm39_v1_chr5_-_41865477_41865513	0.36949994315117163	Rfx3_Rfx1_Rfx4	ENSMUST00000031011.12|Rab28|ENSMUSG00000029128.13|RAB28, member RAS oncogene family	ENSMUST00000202913.2|Rab28|ENSMUSG00000029128.13|RAB28, member RAS oncogene family
mm39_v1_chr10_+_80905869_80905880	0.3611736236218049	Rfx3_Rfx1_Rfx4	ENSMUST00000005057.7|Thop1|ENSMUSG00000004929.13|thimet oligopeptidase 1
mm39_v1_chr17_-_26014613_26014638	0.3604842888760846	Rfx3_Rfx1_Rfx4	ENSMUST00000235889.2|Gm50367|ENSMUSG00000118135.2|predicted gene, 50367
mm39_v1_chr9_-_60595401_60595467	0.35874035108942337	Rfx3_Rfx1_Rfx4	ENSMUST00000114034.9|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49	ENSMUST00000065603.12|Lrrc49|ENSMUSG00000047766.16|leucine rich repeat containing 49
mm39_v1_chr7_+_79836581_79836651	0.35735203005057337	Rfx3_Rfx1_Rfx4	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr12_-_83609217_83609241	0.3571208934696524	Rfx3_Rfx1_Rfx4	ENSMUST00000222448.2|Zfyve1|ENSMUSG00000042628.9|zinc finger, FYVE domain containing 1
mm39_v1_chr16_-_91525485_91525589	0.3537138081559196	Rfx3_Rfx1_Rfx4	ENSMUST00000231499.2|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1	ENSMUST00000141664.9|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1	ENSMUST00000123751.2|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1	ENSMUST00000122254.8|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1	ENSMUST00000114023.3|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1
mm39_v1_chr15_+_81548090_81548158	0.34972192942641295	Rfx3_Rfx1_Rfx4	ENSMUST00000023029.15|L3mbtl2|ENSMUSG00000022394.15|L3MBTL2 polycomb repressive complex 1 subunit	ENSMUST00000174229.8|L3mbtl2|ENSMUSG00000022394.15|L3MBTL2 polycomb repressive complex 1 subunit	ENSMUST00000172748.8|L3mbtl2|ENSMUSG00000022394.15|L3MBTL2 polycomb repressive complex 1 subunit
mm39_v1_chr12_+_84408803_84408838	0.3395664956742518	Rfx3_Rfx1_Rfx4	ENSMUST00000110278.8|Coq6|ENSMUSG00000021235.14|coenzyme Q6 monooxygenase	ENSMUST00000145522.2|Coq6|ENSMUSG00000021235.14|coenzyme Q6 monooxygenase
mm39_v1_chr7_-_12788592_12788691	0.3355387023199163	Rfx3_Rfx1_Rfx4	ENSMUST00000182515.8|Mzf1|ENSMUSG00000030380.18|myeloid zinc finger 1	ENSMUST00000069289.15|Mzf1|ENSMUSG00000030380.18|myeloid zinc finger 1
mm39_v1_chr1_-_192946359_192946384	0.3351210008365771	Rfx3_Rfx1_Rfx4	ENSMUST00000161737.8|Hsd11b1|ENSMUSG00000016194.15|hydroxysteroid 11-beta dehydrogenase 1
mm39_v1_chr14_-_30723549_30723629	0.3331814889839915	Rfx3_Rfx1_Rfx4	ENSMUST00000226782.2|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)	ENSMUST00000186131.7|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)	ENSMUST00000228767.2|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm39_v1_chr7_-_12788441_12788441	0.33276904205999225	Rfx3_Rfx1_Rfx4	ENSMUST00000182087.2|Mzf1|ENSMUSG00000030380.18|myeloid zinc finger 1
mm39_v1_chr7_-_118304930_118305009	0.3306840428196077	Rfx3_Rfx1_Rfx4	ENSMUST00000207323.2|Gde1|ENSMUSG00000033917.16|glycerophosphodiester phosphodiesterase 1	ENSMUST00000038791.15|Gde1|ENSMUSG00000033917.16|glycerophosphodiester phosphodiesterase 1
mm39_v1_chr12_+_84408742_84408796	0.3273207527238576	Rfx3_Rfx1_Rfx4	ENSMUST00000021661.13|Coq6|ENSMUSG00000021235.14|coenzyme Q6 monooxygenase
mm39_v1_chr2_+_21210527_21210598	0.3224891227735304	Rfx3_Rfx1_Rfx4	ENSMUST00000054591.10|Thnsl1|ENSMUSG00000048550.18|threonine synthase-like 1 (bacterial)	ENSMUST00000102952.8|Thnsl1|ENSMUSG00000048550.18|threonine synthase-like 1 (bacterial)	ENSMUST00000138965.8|Thnsl1|ENSMUSG00000048550.18|threonine synthase-like 1 (bacterial)	ENSMUST00000138914.8|Thnsl1|ENSMUSG00000048550.18|threonine synthase-like 1 (bacterial)	ENSMUST00000102951.2|Thnsl1|ENSMUSG00000048550.18|threonine synthase-like 1 (bacterial)
mm39_v1_chr19_-_45548942_45548976	0.3216714990529978	Rfx3_Rfx1_Rfx4	ENSMUST00000026239.7|Poll|ENSMUSG00000025218.7|polymerase (DNA directed), lambda
mm39_v1_chr17_+_26048010_26048050	0.3193808460305873	Rfx3_Rfx1_Rfx4	ENSMUST00000026832.14|Jmjd8|ENSMUSG00000025736.16|jumonji domain containing 8
mm39_v1_chr2_-_90735171_90735284	0.3177585490964747	Rfx3_Rfx1_Rfx4	ENSMUST00000005647.4|Ndufs3|ENSMUSG00000005510.10|NADH:ubiquinone oxidoreductase core subunit S3
mm39_v1_chr5_-_124616393_124616447	0.31517306686656915	Rfx3_Rfx1_Rfx4	ENSMUST00000031347.8|Rilpl2|ENSMUSG00000029401.9|Rab interacting lysosomal protein-like 2
mm39_v1_chr10_-_79710067_79710273	0.31466985379136736	Rfx3_Rfx1_Rfx4	ENSMUST00000166023.2|Plppr3|ENSMUSG00000035835.15|phospholipid phosphatase related 3	ENSMUST00000167707.2|Plppr3|ENSMUSG00000035835.15|phospholipid phosphatase related 3	ENSMUST00000165601.8|Plppr3|ENSMUSG00000035835.15|phospholipid phosphatase related 3
mm39_v1_chr15_+_100659622_100659679	0.31401740459810723	Rfx3_Rfx1_Rfx4	ENSMUST00000023776.13|Slc4a8|ENSMUSG00000023032.13|solute carrier family 4 (anion exchanger), member 8
mm39_v1_chr12_-_86773160_86773250	0.3121495027848089	Rfx3_Rfx1_Rfx4	ENSMUST00000021682.9|Angel1|ENSMUSG00000021257.15|angel homolog 1
mm39_v1_chr6_+_83162928_83163133	0.30844249677558255	Rfx3_Rfx1_Rfx4	ENSMUST00000113907.2|Dctn1|ENSMUSG00000031865.17|dynactin 1
mm39_v1_chr1_+_191553556_191553602	0.3069327439833924	Rfx3_Rfx1_Rfx4	ENSMUST00000027931.8|Nek2|ENSMUSG00000026622.16|NIMA (never in mitosis gene a)-related expressed kinase 2
mm39_v1_chr2_-_134486039_134486065	0.3057017895658253	Rfx3_Rfx1_Rfx4	ENSMUST00000038228.11|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr11_+_68961599_68961706	0.3042686584209539	Rfx3_Rfx1_Rfx4	ENSMUST00000075980.12|Tmem107|ENSMUSG00000020895.15|transmembrane protein 107	ENSMUST00000094081.5|Tmem107|ENSMUSG00000020895.15|transmembrane protein 107
mm39_v1_chr19_-_10533088_10533125	0.3033925996895149	Rfx3_Rfx1_Rfx4	ENSMUST00000059582.9|Tmem216|ENSMUSG00000024667.13|transmembrane protein 216	ENSMUST00000154383.2|Tmem216|ENSMUSG00000024667.13|transmembrane protein 216
mm39_v1_chr11_-_119190896_119190915	0.30301458244237006	Rfx3_Rfx1_Rfx4	ENSMUST00000026667.15|Eif4a3|ENSMUSG00000025580.16|eukaryotic translation initiation factor 4A3
mm39_v1_chr7_+_140462343_140462385	0.3009478247368069	Rfx3_Rfx1_Rfx4	ENSMUST00000163610.9|Psmd13|ENSMUSG00000025487.16|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	ENSMUST00000164681.8|Psmd13|ENSMUSG00000025487.16|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm39_v1_chr1_-_59276252_59276416	0.2929466419608508	Rfx3_Rfx1_Rfx4	ENSMUST00000163058.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000160945.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000027178.13|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor
mm39_v1_chr10_+_126899468_126899524	0.28945464533259274	Rfx3_Rfx1_Rfx4	ENSMUST00000120226.8|Cdk4|ENSMUSG00000006728.13|cyclin-dependent kinase 4	ENSMUST00000133115.8|Cdk4|ENSMUSG00000006728.13|cyclin-dependent kinase 4
mm39_v1_chr10_-_75673175_75673217	0.2888242873028238	Rfx3_Rfx1_Rfx4	ENSMUST00000220440.2|Gstt2|ENSMUSG00000033318.8|glutathione S-transferase, theta 2
mm39_v1_chr6_-_113717689_113717704	0.28861735452057374	Rfx3_Rfx1_Rfx4	ENSMUST00000032440.6|Sec13|ENSMUSG00000030298.11|SEC13 homolog, nuclear pore and COPII coat complex component
mm39_v1_chr7_-_16761732_16761771	0.2705167877719035	Rfx3_Rfx1_Rfx4	ENSMUST00000142597.2|Ppp5c|ENSMUSG00000003099.12|protein phosphatase 5, catalytic subunit
mm39_v1_chr7_+_127187910_127188091	0.2696842575632429	Rfx3_Rfx1_Rfx4	ENSMUST00000205694.2|Rnf40|ENSMUSG00000030816.9|ring finger protein 40	ENSMUST00000033088.8|Rnf40|ENSMUSG00000030816.9|ring finger protein 40	ENSMUST00000206914.2|Rnf40|ENSMUSG00000030816.9|ring finger protein 40
mm39_v1_chr14_-_55880980_55881058	0.2630857075579288	Rfx3_Rfx1_Rfx4	ENSMUST00000132338.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1
mm39_v1_chr15_+_84926909_84926943	0.2623003024408138	Rfx3_Rfx1_Rfx4	ENSMUST00000229203.2|Fam118a|ENSMUSG00000022434.9|family with sequence similarity 118, member A
mm39_v1_chr16_+_3726665_3726970	0.26208818418624213	Rfx3_Rfx1_Rfx4	ENSMUST00000145150.9|Cluap1|ENSMUSG00000014232.15|clusterin associated protein 1	ENSMUST00000040881.14|Cluap1|ENSMUSG00000014232.15|clusterin associated protein 1	ENSMUST00000124849.2|Cluap1|ENSMUSG00000014232.15|clusterin associated protein 1
mm39_v1_chrX_-_7999009_7999096	0.2608891259960493	Rfx3_Rfx1_Rfx4	ENSMUST00000130832.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000033506.13|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000115623.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000153839.2|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13
mm39_v1_chr1_-_59158902_59158965	0.2593799311450727	Rfx3_Rfx1_Rfx4	ENSMUST00000087475.11|Tmem237|ENSMUSG00000038079.15|transmembrane protein 237
mm39_v1_chr16_+_32238520_32238564	0.2590805451543283	Rfx3_Rfx1_Rfx4	ENSMUST00000014220.15|Dynlt2b|ENSMUSG00000014075.16|dynein light chain Tctex-type 2B	ENSMUST00000080316.8|Dynlt2b|ENSMUSG00000014075.16|dynein light chain Tctex-type 2B
mm39_v1_chr9_+_65368207_65368276	0.25836842807465965	Rfx3_Rfx1_Rfx4	ENSMUST00000034955.8|Spg21|ENSMUSG00000032388.8|SPG21, maspardin	ENSMUST00000213957.2|Spg21|ENSMUSG00000032388.8|SPG21, maspardin
mm39_v1_chr13_-_107073415_107073466	0.2571331253181334	Rfx3_Rfx1_Rfx4	ENSMUST00000080856.14|Ipo11|ENSMUSG00000042590.18|importin 11
mm39_v1_chr7_+_140461860_140461895	0.2571201094851664	Rfx3_Rfx1_Rfx4	ENSMUST00000026560.14|Psmd13|ENSMUSG00000025487.16|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm39_v1_chrX_+_47712676_47712839	0.25671517084991174	Rfx3_Rfx1_Rfx4	ENSMUST00000177710.2|Slc25a14|ENSMUSG00000031105.17|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm39_v1_chr1_+_75498162_75498247	0.2550571914312594	Rfx3_Rfx1_Rfx4	ENSMUST00000027414.16|Stk11ip|ENSMUSG00000026213.16|serine/threonine kinase 11 interacting protein	ENSMUST00000113553.2|Stk11ip|ENSMUSG00000026213.16|serine/threonine kinase 11 interacting protein
mm39_v1_chr14_-_30723292_30723341	0.25377424693055345	Rfx3_Rfx1_Rfx4	ENSMUST00000228736.2|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)	ENSMUST00000226374.2|Spcs1|ENSMUSG00000021917.17|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm39_v1_chr7_-_133378410_133378433	0.2483883608510881	Rfx3_Rfx1_Rfx4	ENSMUST00000130182.2|Dhx32|ENSMUSG00000030986.14|DEAH (Asp-Glu-Ala-His) box polypeptide 32	ENSMUST00000106139.8|Dhx32|ENSMUSG00000030986.14|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm39_v1_chr3_-_105867415_105867415	0.24824743421106735	Rfx3_Rfx1_Rfx4	ENSMUST00000118209.8|Atp5pb|ENSMUSG00000000563.18|ATP synthase peripheral stalk-membrane subunit b
mm39_v1_chr8_+_110944575_110944637	0.2463119123708915	Rfx3_Rfx1_Rfx4	ENSMUST00000056972.6|Cmtr2|ENSMUSG00000046441.6|cap methyltransferase 2
mm39_v1_chr5_-_114961501_114961518	0.24372722926206983	Rfx3_Rfx1_Rfx4	ENSMUST00000100850.6|1500011B03Rik|ENSMUSG00000072694.9|RIKEN cDNA 1500011B03 gene
mm39_v1_chr10_-_79710468_79710492	0.24251487880479597	Rfx3_Rfx1_Rfx4	ENSMUST00000092325.11|Plppr3|ENSMUSG00000035835.15|phospholipid phosphatase related 3
mm39_v1_chr8_-_84059048_84059121	0.24235693792949994	Rfx3_Rfx1_Rfx4	ENSMUST00000177594.8|Elmod2|ENSMUSG00000035151.13|ELMO/CED-12 domain containing 2	ENSMUST00000053902.4|Elmod2|ENSMUSG00000035151.13|ELMO/CED-12 domain containing 2
mm39_v1_chr4_-_133694543_133694596	0.2399648592033095	Rfx3_Rfx1_Rfx4	ENSMUST00000123234.8|Hmgn2|ENSMUSG00000003038.16|high mobility group nucleosomal binding domain 2
mm39_v1_chr2_+_166634445_166634456	0.2391079542941997	Rfx3_Rfx1_Rfx4	ENSMUST00000065753.2|Trp53rkb|ENSMUSG00000042854.10|transformation related protein 53 regulating kinase B
mm39_v1_chr16_+_49519561_49519667	0.23722607754823005	Rfx3_Rfx1_Rfx4	ENSMUST00000046777.11|Ift57|ENSMUSG00000032965.12|intraflagellar transport 57	ENSMUST00000142682.9|Ift57|ENSMUSG00000032965.12|intraflagellar transport 57
mm39_v1_chr4_-_116982804_116982895	0.23456176590475267	Rfx3_Rfx1_Rfx4	ENSMUST00000183310.2|Btbd19|ENSMUSG00000073771.12|BTB (POZ) domain containing 19
mm39_v1_chr11_+_70021155_70021250	0.23344119514567171	Rfx3_Rfx1_Rfx4	ENSMUST00000041550.12|Mgl2|ENSMUSG00000040950.14|macrophage galactose N-acetyl-galactosamine specific lectin 2	ENSMUST00000165951.8|Mgl2|ENSMUSG00000040950.14|macrophage galactose N-acetyl-galactosamine specific lectin 2
mm39_v1_chr5_-_149559636_149559654	0.23136204091471252	Rfx3_Rfx1_Rfx4	ENSMUST00000201452.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr3_-_89152320_89152506	0.23113595602637124	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.8|Trim46|ENSMUSG00000042766.18|tripartite motif-containing 46	ENSMUST00000090924.13|Trim46|ENSMUSG00000042766.18|tripartite motif-containing 46
mm39_v1_chr7_-_79882228_79882246	0.23080483270268104	Rfx3_Rfx1_Rfx4	ENSMUST00000123279.8|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)
mm39_v1_chr12_-_110855521_110855581	0.230698366493282	Rfx3_Rfx1_Rfx4	ENSMUST00000220607.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000221182.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000222457.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000221102.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000043716.9|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein
mm39_v1_chr1_+_75213044_75213074	0.23015710696892508	Rfx3_Rfx1_Rfx4	ENSMUST00000188931.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr9_-_24414423_24414528	0.2300423119685948	Rfx3_Rfx1_Rfx4	ENSMUST00000142064.8|Dpy19l1|ENSMUSG00000043067.16|dpy-19-like 1 (C. elegans)	ENSMUST00000170356.2|Dpy19l1|ENSMUSG00000043067.16|dpy-19-like 1 (C. elegans)
mm39_v1_chr11_-_87249837_87249901	0.22838029977954286	Rfx3_Rfx1_Rfx4	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr12_+_72583114_72583169	0.2274513999673494	Rfx3_Rfx1_Rfx4	ENSMUST00000044352.8|Pcnx4|ENSMUSG00000034501.8|pecanex homolog 4
mm39_v1_chr19_-_10533562_10533640	0.22689327482407645	Rfx3_Rfx1_Rfx4	ENSMUST00000025569.9|Tmem216|ENSMUSG00000024667.13|transmembrane protein 216
mm39_v1_chr17_+_36290743_36290816	0.22610870248628334	Rfx3_Rfx1_Rfx4	ENSMUST00000087200.4|Gnl1|ENSMUSG00000024429.10|guanine nucleotide binding protein-like 1
mm39_v1_chr8_-_79547707_79547769	0.2251013037893381	Rfx3_Rfx1_Rfx4	ENSMUST00000130325.8|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	ENSMUST00000051867.7|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
mm39_v1_chr4_-_41314877_41314889	0.22458085504016712	Rfx3_Rfx1_Rfx4	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr5_-_149559667_149559678	0.22329681362921266	Rfx3_Rfx1_Rfx4	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr7_-_109092834_109092945	0.22315664277641972	Rfx3_Rfx1_Rfx4	ENSMUST00000106739.8|Trim66|ENSMUSG00000031026.16|tripartite motif-containing 66
mm39_v1_chr14_-_70391260_70391296	0.22217029862416654	Rfx3_Rfx1_Rfx4	ENSMUST00000035612.7|Ccar2|ENSMUSG00000033712.7|cell cycle activator and apoptosis regulator 2
mm39_v1_chr9_+_20563386_20563401	0.22046634788664998	Rfx3_Rfx1_Rfx4	ENSMUST00000034689.8|Pin1|ENSMUSG00000032171.8|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm39_v1_chr2_+_90735077_90735091	0.22044223000172947	Rfx3_Rfx1_Rfx4	ENSMUST00000111464.8|Kbtbd4|ENSMUSG00000005505.13|kelch repeat and BTB (POZ) domain containing 4	ENSMUST00000090682.4|Kbtbd4|ENSMUSG00000005505.13|kelch repeat and BTB (POZ) domain containing 4
mm39_v1_chrX_+_47712614_47712666	0.2198219744811744	Rfx3_Rfx1_Rfx4	ENSMUST00000114936.8|Slc25a14|ENSMUSG00000031105.17|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm39_v1_chr7_+_126446588_126446931	0.2197262569326768	Rfx3_Rfx1_Rfx4	ENSMUST00000141805.8|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000064110.14|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000205938.2|Doc2a|ENSMUSG00000052301.15|double C2, alpha	ENSMUST00000152051.8|Doc2a|ENSMUSG00000052301.15|double C2, alpha
mm39_v1_chr15_+_59186876_59186977	0.21866696522207385	Rfx3_Rfx1_Rfx4	ENSMUST00000022977.14|Sqle|ENSMUSG00000022351.15|squalene epoxidase	ENSMUST00000100640.5|Sqle|ENSMUSG00000022351.15|squalene epoxidase
mm39_v1_chr17_+_35191661_35191705	0.21779649844791624	Rfx3_Rfx1_Rfx4	ENSMUST00000007248.5|Hspa1l|ENSMUSG00000007033.5|heat shock protein 1-like
mm39_v1_chr2_+_164587948_164587959	0.21728779089038963	Rfx3_Rfx1_Rfx4	ENSMUST00000109327.4|Dnttip1|ENSMUSG00000017299.14|deoxynucleotidyltransferase, terminal, interacting protein 1
mm39_v1_chr2_-_131001916_131002001	0.21710605174192613	Rfx3_Rfx1_Rfx4	ENSMUST00000103188.10|1700037H04Rik|ENSMUSG00000027327.17|RIKEN cDNA 1700037H04 gene	ENSMUST00000133602.8|1700037H04Rik|ENSMUSG00000027327.17|RIKEN cDNA 1700037H04 gene	ENSMUST00000028800.12|1700037H04Rik|ENSMUSG00000027327.17|RIKEN cDNA 1700037H04 gene
mm39_v1_chr19_-_41884599_41884646	0.21611342961285568	Rfx3_Rfx1_Rfx4	ENSMUST00000038677.5|Rrp12|ENSMUSG00000035049.5|ribosomal RNA processing 12 homolog
mm39_v1_chr11_-_59730654_59730674	0.21204063387111385	Rfx3_Rfx1_Rfx4	ENSMUST00000019517.10|Cops3|ENSMUSG00000019373.12|COP9 signalosome subunit 3
mm39_v1_chr16_-_91525655_91525690	0.21173223908520283	Rfx3_Rfx1_Rfx4	ENSMUST00000117644.8|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1
mm39_v1_chr6_-_83030759_83030818	0.21150785692092744	Rfx3_Rfx1_Rfx4	ENSMUST00000134606.8|Htra2|ENSMUSG00000068329.13|HtrA serine peptidase 2
mm39_v1_chr5_+_138170259_138170283	0.20935046589587986	Rfx3_Rfx1_Rfx4	ENSMUST00000019662.11|Ap4m1|ENSMUSG00000019518.12|adaptor-related protein complex AP-4, mu 1	ENSMUST00000151318.8|Ap4m1|ENSMUSG00000019518.12|adaptor-related protein complex AP-4, mu 1
mm39_v1_chr2_+_125994050_125994066	0.20686797911293864	Rfx3_Rfx1_Rfx4	ENSMUST00000170908.8|Dtwd1|ENSMUSG00000023330.13|DTW domain containing 1
mm39_v1_chr17_-_45903410_45903427	0.20603444284535724	Rfx3_Rfx1_Rfx4	ENSMUST00000166119.8|Slc29a1|ENSMUSG00000023942.16|solute carrier family 29 (nucleoside transporters), member 1
mm39_v1_chr15_+_80832685_80832750	0.20580489496688642	Rfx3_Rfx1_Rfx4	ENSMUST00000023043.10|Adsl|ENSMUSG00000022407.11|adenylosuccinate lyase	ENSMUST00000164806.6|Adsl|ENSMUSG00000022407.11|adenylosuccinate lyase	ENSMUST00000207170.2|Adsl|ENSMUSG00000022407.11|adenylosuccinate lyase	ENSMUST00000168756.8|Adsl|ENSMUSG00000022407.11|adenylosuccinate lyase
mm39_v1_chr4_-_155753628_155753690	0.20506556572931942	Rfx3_Rfx1_Rfx4	ENSMUST00000103176.10|Mib2|ENSMUSG00000029060.18|mindbomb E3 ubiquitin protein ligase 2
mm39_v1_chr14_-_56339915_56340031	0.20385871020430854	Rfx3_Rfx1_Rfx4	ENSMUST00000015583.2|Ctsg|ENSMUSG00000040314.3|cathepsin G
mm39_v1_chr13_-_100912308_100912407	0.20160843834618417	Rfx3_Rfx1_Rfx4	ENSMUST00000075550.4|Cenph|ENSMUSG00000045273.9|centromere protein H
mm39_v1_chr8_-_84831391_84831426	0.20117254975037907	Rfx3_Rfx1_Rfx4	ENSMUST00000041367.9|Dcaf15|ENSMUSG00000037103.9|DDB1 and CUL4 associated factor 15	ENSMUST00000210279.2|Dcaf15|ENSMUSG00000037103.9|DDB1 and CUL4 associated factor 15
mm39_v1_chr14_-_86986541_86986569	0.20108226615706878	Rfx3_Rfx1_Rfx4	ENSMUST00000226254.2|Diaph3|ENSMUSG00000022021.15|diaphanous related formin 3
mm39_v1_chr10_+_39009951_39010029	0.20002348834442069	Rfx3_Rfx1_Rfx4	ENSMUST00000019991.8|Tube1|ENSMUSG00000019845.9|tubulin, epsilon 1
mm39_v1_chr16_-_91525863_91525980	0.19764795612024286	Rfx3_Rfx1_Rfx4	ENSMUST00000073466.13|Cryzl1|ENSMUSG00000058240.15|crystallin, zeta (quinone reductase)-like 1
mm39_v1_chr12_-_84455764_84455808	0.19523476330146447	Rfx3_Rfx1_Rfx4	ENSMUST00000120942.8|Entpd5|ENSMUSG00000021236.17|ectonucleoside triphosphate diphosphohydrolase 5	ENSMUST00000110272.9|Entpd5|ENSMUSG00000021236.17|ectonucleoside triphosphate diphosphohydrolase 5
mm39_v1_chr15_-_103123711_103123793	0.19441703635420157	Rfx3_Rfx1_Rfx4	ENSMUST00000122182.2|Cbx5|ENSMUSG00000009575.15|chromobox 5	ENSMUST00000108813.10|Cbx5|ENSMUSG00000009575.15|chromobox 5	ENSMUST00000127191.2|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr15_-_79025387_79025469	0.1926030733415756	Rfx3_Rfx1_Rfx4	ENSMUST00000187550.7|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene	ENSMUST00000188562.7|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene	ENSMUST00000190509.7|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene	ENSMUST00000190730.7|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene	ENSMUST00000190959.7|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene	ENSMUST00000169604.8|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene	ENSMUST00000186053.7|1700088E04Rik|ENSMUSG00000033029.13|RIKEN cDNA 1700088E04 gene
mm39_v1_chr3_+_37366662_37366726	0.19256314241308328	Rfx3_Rfx1_Rfx4	ENSMUST00000138710.3|Gm43439|ENSMUSG00000106407.2|predicted gene 43439	ENSMUST00000057975.8|Bbs12|ENSMUSG00000051444.10|Bardet-Biedl syndrome 12 (human)	ENSMUST00000108121.4|Bbs12|ENSMUSG00000051444.10|Bardet-Biedl syndrome 12 (human)
mm39_v1_chr3_-_107992662_107992728	0.191866790460801	Rfx3_Rfx1_Rfx4	ENSMUST00000078912.7|Ampd2|ENSMUSG00000027889.18|adenosine monophosphate deaminase 2
mm39_v1_chr14_-_55873026_55873150	0.19143769103512243	Rfx3_Rfx1_Rfx4	ENSMUST00000125133.2|Ipo4|ENSMUSG00000002319.17|importin 4	ENSMUST00000047131.16|Ipo4|ENSMUSG00000002319.17|importin 4
mm39_v1_chr8_-_23295603_23295666	0.1905061802880206	Rfx3_Rfx1_Rfx4	ENSMUST00000163739.3|Ap3m2|ENSMUSG00000031539.7|adaptor-related protein complex 3, mu 2 subunit	ENSMUST00000210656.2|Ap3m2|ENSMUSG00000031539.7|adaptor-related protein complex 3, mu 2 subunit
mm39_v1_chr1_+_181952302_181952383	0.18978838291849112	Rfx3_Rfx1_Rfx4	ENSMUST00000111018.2|Srp9|ENSMUSG00000026511.8|signal recognition particle 9	ENSMUST00000027792.6|Srp9|ENSMUSG00000026511.8|signal recognition particle 9
mm39_v1_chr15_+_5173342_5173379	0.18975133127937083	Rfx3_Rfx1_Rfx4	ENSMUST00000051186.9|Prkaa1|ENSMUSG00000050697.10|protein kinase, AMP-activated, alpha 1 catalytic subunit	ENSMUST00000228218.2|Prkaa1|ENSMUSG00000050697.10|protein kinase, AMP-activated, alpha 1 catalytic subunit
mm39_v1_chr7_+_16550198_16550286	0.18948622625931583	Rfx3_Rfx1_Rfx4	ENSMUST00000108495.9|Strn4|ENSMUSG00000030374.16|striatin, calmodulin binding protein 4
mm39_v1_chr4_+_118478357_118478436	0.1891561020731532	Rfx3_Rfx1_Rfx4	ENSMUST00000147373.2|Ebna1bp2|ENSMUSG00000028729.16|EBNA1 binding protein 2
mm39_v1_chr7_-_80550968_80551017	0.18546643860617917	Rfx3_Rfx1_Rfx4	ENSMUST00000146402.2|Wdr73|ENSMUSG00000025722.17|WD repeat domain 73	ENSMUST00000026816.15|Wdr73|ENSMUSG00000025722.17|WD repeat domain 73
mm39_v1_chr4_-_56802266_56802332	0.18342121543310452	Rfx3_Rfx1_Rfx4	ENSMUST00000030140.3|Elp1|ENSMUSG00000028431.12|elongator complex protein 1
mm39_v1_chr5_-_138170644_138170684	0.1814393204998453	Rfx3_Rfx1_Rfx4	ENSMUST00000000505.16|Mcm7|ENSMUSG00000029730.17|minichromosome maintenance complex component 7
mm39_v1_chr5_+_21629932_21630031	0.1813033113591075	Rfx3_Rfx1_Rfx4	ENSMUST00000056045.5|Fam185a|ENSMUSG00000047221.6|family with sequence similarity 185, member A
mm39_v1_chr13_-_30170031_30170048	0.18099757178526724	Rfx3_Rfx1_Rfx4	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chr17_+_56611313_56611407	0.1801172234764505	Rfx3_Rfx1_Rfx4	ENSMUST00000113035.8|Uhrf1|ENSMUSG00000001228.15|ubiquitin-like, containing PHD and RING finger domains, 1	ENSMUST00000113039.9|Uhrf1|ENSMUSG00000001228.15|ubiquitin-like, containing PHD and RING finger domains, 1	ENSMUST00000142387.2|Uhrf1|ENSMUSG00000001228.15|ubiquitin-like, containing PHD and RING finger domains, 1
mm39_v1_chr15_+_79113341_79113373	0.1789130941551886	Rfx3_Rfx1_Rfx4	ENSMUST00000163571.8|Pick1|ENSMUSG00000068206.14|protein interacting with C kinase 1
mm39_v1_chr16_+_35861554_35861605	0.17687681553898507	Rfx3_Rfx1_Rfx4	ENSMUST00000042203.10|Wdr5b|ENSMUSG00000034379.10|WD repeat domain 5B
mm39_v1_chr15_-_85918378_85918413	0.17663704438239064	Rfx3_Rfx1_Rfx4	ENSMUST00000016172.10|Celsr1|ENSMUSG00000016028.12|cadherin, EGF LAG seven-pass G-type receptor 1
mm39_v1_chr9_+_107926441_107926499	0.17413983774563876	Rfx3_Rfx1_Rfx4	ENSMUST00000112295.9|Gmppb|ENSMUSG00000070284.11|GDP-mannose pyrophosphorylase B
mm39_v1_chr9_+_63509925_63509997	0.17330097151350365	Rfx3_Rfx1_Rfx4	ENSMUST00000041551.9|Aagab|ENSMUSG00000037257.9|alpha- and gamma-adaptin binding protein
mm39_v1_chr9_-_106563091_106563161	0.1718029305101354	Rfx3_Rfx1_Rfx4	ENSMUST00000046735.11|Tex264|ENSMUSG00000040813.17|testis expressed gene 264
mm39_v1_chr11_+_22462088_22462088	0.17051144968574186	Rfx3_Rfx1_Rfx4	ENSMUST00000059319.8|Tmem17|ENSMUSG00000049904.8|transmembrane protein 17
mm39_v1_chr19_+_6111204_6111287	0.16984182095089034	Rfx3_Rfx1_Rfx4	ENSMUST00000162726.5|Znhit2|ENSMUSG00000075227.7|zinc finger, HIT domain containing 2
mm39_v1_chr3_+_105866685_105866744	0.1685013593145283	Rfx3_Rfx1_Rfx4	ENSMUST00000010278.12|Wdr77|ENSMUSG00000000561.15|WD repeat domain 77
mm39_v1_chr1_+_90531183_90531250	0.16822255730462177	Rfx3_Rfx1_Rfx4	ENSMUST00000186750.2|Cops8|ENSMUSG00000034432.12|COP9 signalosome subunit 8
mm39_v1_chr8_+_85786684_85786716	0.16820810035819628	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.4|Fbxw9|ENSMUSG00000008167.15|F-box and WD-40 domain protein 9
mm39_v1_chr19_-_7218363_7218437	0.16797338932068337	Rfx3_Rfx1_Rfx4	ENSMUST00000236769.2|Naa40|ENSMUSG00000024764.11|N(alpha)-acetyltransferase 40, NatD catalytic subunit
mm39_v1_chr11_+_3845221_3845308	0.16716742733500656	Rfx3_Rfx1_Rfx4	ENSMUST00000109996.8|Dusp18|ENSMUSG00000047205.13|dual specificity phosphatase 18	ENSMUST00000055931.5|Dusp18|ENSMUSG00000047205.13|dual specificity phosphatase 18
mm39_v1_chr15_+_78312764_78312836	0.16695667059449174	Rfx3_Rfx1_Rfx4	ENSMUST00000162517.8|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17	ENSMUST00000166142.10|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17	ENSMUST00000089414.11|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17
mm39_v1_chr2_-_35939377_35939418	0.16562641109321852	Rfx3_Rfx1_Rfx4	ENSMUST00000070112.6|Ndufa8|ENSMUSG00000026895.8|NADH:ubiquinone oxidoreductase subunit A8
mm39_v1_chr17_-_56916771_56916819	0.16517835275424353	Rfx3_Rfx1_Rfx4	ENSMUST00000052832.6|Micos13|ENSMUSG00000049760.7|mitochondrial contact site and cristae organizing system subunit 13
mm39_v1_chr4_-_154059495_154059583	0.1651748039472933	Rfx3_Rfx1_Rfx4	ENSMUST00000030893.3|Dffb|ENSMUSG00000029027.10|DNA fragmentation factor, beta subunit
mm39_v1_chr17_+_79244553_79244612	0.1643012317834424	Rfx3_Rfx1_Rfx4	ENSMUST00000024887.6|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7	ENSMUST00000233068.2|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7	ENSMUST00000233777.2|Ndufaf7|ENSMUSG00000024082.6|NADH:ubiquinone oxidoreductase complex assembly factor 7
mm39_v1_chr17_-_34243608_34243654	0.16369195049348234	Rfx3_Rfx1_Rfx4	ENSMUST00000025183.9|Ring1|ENSMUSG00000024325.9|ring finger protein 1
mm39_v1_chr7_-_79882313_79882383	0.16302232014968981	Rfx3_Rfx1_Rfx4	ENSMUST00000206084.2|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)	ENSMUST00000205996.2|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)	ENSMUST00000071457.12|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)
mm39_v1_chr6_+_117883732_117883762	0.16276189406097263	Rfx3_Rfx1_Rfx4	ENSMUST00000179224.8|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F	ENSMUST00000035493.14|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F
mm39_v1_chr11_+_87938128_87938199	0.16161901856316502	Rfx3_Rfx1_Rfx4	ENSMUST00000139129.9|Srsf1|ENSMUSG00000018379.18|serine and arginine-rich splicing factor 1
mm39_v1_chr16_-_93400691_93400703	0.16094884540960036	Rfx3_Rfx1_Rfx4	ENSMUST00000023669.14|Setd4|ENSMUSG00000022948.17|SET domain containing 4	ENSMUST00000233931.2|Setd4|ENSMUSG00000022948.17|SET domain containing 4	ENSMUST00000154355.3|Setd4|ENSMUSG00000022948.17|SET domain containing 4
mm39_v1_chr10_-_68377672_68377738	0.1597672529967108	Rfx3_Rfx1_Rfx4	ENSMUST00000020103.9|Cabcoco1|ENSMUSG00000019945.11|ciliary associated calcium binding coiled-coil 1
mm39_v1_chr2_-_131016573_131016698	0.15968711284910034	Rfx3_Rfx1_Rfx4	ENSMUST00000127987.2|Spef1|ENSMUSG00000027329.10|sperm flagellar 1
mm39_v1_chr18_-_24153805_24153876	0.15965264364937073	Rfx3_Rfx1_Rfx4	ENSMUST00000066497.12|Zfp24|ENSMUSG00000051469.15|zinc finger protein 24
mm39_v1_chr14_+_47605208_47605253	0.1595468132659078	Rfx3_Rfx1_Rfx4	ENSMUST00000151405.9|Lgals3|ENSMUSG00000050335.18|lectin, galactose binding, soluble 3
mm39_v1_chr11_+_109541747_109541829	0.15913598405349302	Rfx3_Rfx1_Rfx4	ENSMUST00000049527.7|Prkar1a|ENSMUSG00000020612.17|protein kinase, cAMP dependent regulatory, type I, alpha
mm39_v1_chr10_-_62414236_62414242	0.15904112797230527	Rfx3_Rfx1_Rfx4	ENSMUST00000065887.14|Kifbp|ENSMUSG00000036955.17|kinesin family binding protein
mm39_v1_chr1_-_58735106_58735148	0.15896833403674956	Rfx3_Rfx1_Rfx4	ENSMUST00000055313.14|Flacc1|ENSMUSG00000047528.14|flagellum associated containing coiled-coil domains 1	ENSMUST00000188772.7|Flacc1|ENSMUSG00000047528.14|flagellum associated containing coiled-coil domains 1
mm39_v1_chr16_-_4782031_4782085	0.15820973872835928	Rfx3_Rfx1_Rfx4	ENSMUST00000023157.6|Anks3|ENSMUSG00000022515.7|ankyrin repeat and sterile alpha motif domain containing 3	ENSMUST00000229765.2|Anks3|ENSMUSG00000022515.7|ankyrin repeat and sterile alpha motif domain containing 3
mm39_v1_chr1_-_75156993_75157052	0.15813196113427994	Rfx3_Rfx1_Rfx4	ENSMUST00000027396.15|Abcb6|ENSMUSG00000026198.16|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm39_v1_chr15_+_102240134_102240216	0.15753640043976117	Rfx3_Rfx1_Rfx4	ENSMUST00000113682.9|Myg1|ENSMUSG00000001285.13|melanocyte proliferating gene 1	ENSMUST00000001331.13|Myg1|ENSMUSG00000001285.13|melanocyte proliferating gene 1	ENSMUST00000171244.2|Myg1|ENSMUSG00000001285.13|melanocyte proliferating gene 1
mm39_v1_chr11_-_74787877_74787920	0.15746178060329308	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.12|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2	ENSMUST00000081799.6|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2
mm39_v1_chr15_+_78312851_78312871	0.15726898803169612	Rfx3_Rfx1_Rfx4	ENSMUST00000159771.8|Kctd17|ENSMUSG00000033287.17|potassium channel tetramerisation domain containing 17
mm39_v1_chr15_+_25774070_25774130	0.1566812580051359	Rfx3_Rfx1_Rfx4	ENSMUST00000125667.3|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr1_+_135945798_135945809	0.15668007995248465	Rfx3_Rfx1_Rfx4	ENSMUST00000117950.2|Tmem9|ENSMUSG00000026411.18|transmembrane protein 9
mm39_v1_chr9_+_82711859_82711887	0.15560960408280275	Rfx3_Rfx1_Rfx4	ENSMUST00000034783.6|Irak1bp1|ENSMUSG00000032251.13|interleukin-1 receptor-associated kinase 1 binding protein 1
mm39_v1_chr7_-_133378468_133378539	0.15548128826802435	Rfx3_Rfx1_Rfx4	ENSMUST00000033290.12|Dhx32|ENSMUSG00000030986.14|DEAH (Asp-Glu-Ala-His) box polypeptide 32
mm39_v1_chr3_+_89970088_89970148	0.15519122199868493	Rfx3_Rfx1_Rfx4	ENSMUST00000238911.2|1700094D03Rik|ENSMUSG00000118506.2|RIKEN cDNA 1700094D03 gene	ENSMUST00000029551.3|1700094D03Rik|ENSMUSG00000118506.2|RIKEN cDNA 1700094D03 gene
mm39_v1_chr11_-_101442663_101442719	0.15518123292973462	Rfx3_Rfx1_Rfx4	ENSMUST00000017290.11|Brca1|ENSMUSG00000017146.13|breast cancer 1, early onset
mm39_v1_chr7_-_98790275_98790356	0.15484446911743407	Rfx3_Rfx1_Rfx4	ENSMUST00000037968.10|Uvrag|ENSMUSG00000035354.10|UV radiation resistance associated gene
mm39_v1_chr4_+_130001349_130001419	0.15451306239800258	Rfx3_Rfx1_Rfx4	ENSMUST00000030563.6|Pef1|ENSMUSG00000028779.17|penta-EF hand domain containing 1
mm39_v1_chr5_-_129085558_129085602	0.15247495940921113	Rfx3_Rfx1_Rfx4	ENSMUST00000100680.10|Stx2|ENSMUSG00000029428.14|syntaxin 2
mm39_v1_chr5_-_149559792_149559841	0.15193403884870668	Rfx3_Rfx1_Rfx4	ENSMUST00000202361.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1	ENSMUST00000202089.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1	ENSMUST00000200825.2|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1	ENSMUST00000201559.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr11_-_48707763_48707788	0.15174702417103872	Rfx3_Rfx1_Rfx4	ENSMUST00000140800.2|Trim41|ENSMUSG00000040365.15|tripartite motif-containing 41
mm39_v1_chr17_+_6057868_6057893	0.1514982694228716	Rfx3_Rfx1_Rfx4	ENSMUST00000115785.8|Synj2|ENSMUSG00000023805.18|synaptojanin 2
mm39_v1_chr5_+_130215996_130216007	0.15115503227752936	Rfx3_Rfx1_Rfx4	ENSMUST00000119027.8|Rabgef1|ENSMUSG00000025340.15|RAB guanine nucleotide exchange factor (GEF) 1	ENSMUST00000026390.8|Rabgef1|ENSMUSG00000025340.15|RAB guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr15_+_79113563_79113622	0.15050115028348782	Rfx3_Rfx1_Rfx4	ENSMUST00000018295.14|Pick1|ENSMUSG00000068206.14|protein interacting with C kinase 1	ENSMUST00000053926.12|Gm49486|ENSMUSG00000116121.2|predicted gene, 49486
mm39_v1_chr11_+_87938519_87938554	0.14874293532207974	Rfx3_Rfx1_Rfx4	ENSMUST00000079866.11|Srsf1|ENSMUSG00000018379.18|serine and arginine-rich splicing factor 1
mm39_v1_chr4_+_102835888_102835912	0.14870781272537043	Rfx3_Rfx1_Rfx4	ENSMUST00000223169.2|Dynlt5|ENSMUSG00000028523.15|dynein light chain Tctex-type 5
mm39_v1_chr17_+_6697511_6697604	0.1484479540130854	Rfx3_Rfx1_Rfx4	ENSMUST00000179569.3|Dynlt1b|ENSMUSG00000096255.3|dynein light chain Tctex-type 1B
mm39_v1_chr9_-_109946447_109946513	0.14832710376575808	Rfx3_Rfx1_Rfx4	ENSMUST00000111991.9|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000197182.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000198425.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000199529.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30	ENSMUST00000196171.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm39_v1_chr19_+_6952580_6952683	0.1471392729939699	Rfx3_Rfx1_Rfx4	ENSMUST00000237084.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B	ENSMUST00000236218.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B	ENSMUST00000237235.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr9_+_108447077_108447142	0.14634605676925888	Rfx3_Rfx1_Rfx4	ENSMUST00000019183.14|Dalrd3|ENSMUSG00000019039.15|DALR anticodon binding domain containing 3
mm39_v1_chr6_+_137712076_137712150	0.14588881130525275	Rfx3_Rfx1_Rfx4	ENSMUST00000064910.7|Strap|ENSMUSG00000030224.11|serine/threonine kinase receptor associated protein
mm39_v1_chr3_+_144824325_144824391	0.14572780895952486	Rfx3_Rfx1_Rfx4	ENSMUST00000098538.9|Odf2l|ENSMUSG00000028256.17|outer dense fiber of sperm tails 2-like	ENSMUST00000106192.9|Odf2l|ENSMUSG00000028256.17|outer dense fiber of sperm tails 2-like	ENSMUST00000098539.7|Odf2l|ENSMUSG00000028256.17|outer dense fiber of sperm tails 2-like	ENSMUST00000029920.15|Odf2l|ENSMUSG00000028256.17|outer dense fiber of sperm tails 2-like
mm39_v1_chr14_+_31807760_31807834	0.14561187295545233	Rfx3_Rfx1_Rfx4	ENSMUST00000170600.8|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1	ENSMUST00000168986.7|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1	ENSMUST00000169649.2|Oxnad1|ENSMUSG00000021906.15|oxidoreductase NAD-binding domain containing 1
mm39_v1_chr17_+_46558995_46559065	0.144848608836798	Rfx3_Rfx1_Rfx4	ENSMUST00000095263.10|Yipf3|ENSMUSG00000071074.10|Yip1 domain family, member 3	ENSMUST00000123311.8|Yipf3|ENSMUSG00000071074.10|Yip1 domain family, member 3
mm39_v1_chr2_+_162916551_162916665	0.1438727258137533	Rfx3_Rfx1_Rfx4	ENSMUST00000142729.3|Mybl2|ENSMUSG00000017861.12|myeloblastosis oncogene-like 2
mm39_v1_chr2_+_32647246_32647331	0.14353246699186742	Rfx3_Rfx1_Rfx4	ENSMUST00000009707.14|Tor2a|ENSMUSG00000009563.17|torsin family 2, member A	ENSMUST00000177382.2|Tor2a|ENSMUSG00000009563.17|torsin family 2, member A	ENSMUST00000140999.2|Tor2a|ENSMUSG00000009563.17|torsin family 2, member A
mm39_v1_chr8_+_72022300_72022392	0.1432801934586707	Rfx3_Rfx1_Rfx4	ENSMUST00000212111.2|Slc27a1|ENSMUSG00000031808.8|solute carrier family 27 (fatty acid transporter), member 1
mm39_v1_chr11_-_78427061_78427158	0.14294373082311126	Rfx3_Rfx1_Rfx4	ENSMUST00000017759.9|Tnfaip1|ENSMUSG00000017615.13|tumor necrosis factor, alpha-induced protein 1 (endothelial)	ENSMUST00000108277.3|Tnfaip1|ENSMUSG00000017615.13|tumor necrosis factor, alpha-induced protein 1 (endothelial)
mm39_v1_chr16_-_59459486_59459541	0.14206155727819392	Rfx3_Rfx1_Rfx4	ENSMUST00000149797.3|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6	ENSMUST00000023405.16|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6
mm39_v1_chr17_-_36014892_36015031	0.14185857393983056	Rfx3_Rfx1_Rfx4	ENSMUST00000097333.10|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1	ENSMUST00000003628.13|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr4_-_141602190_141602264	0.14181474769699987	Rfx3_Rfx1_Rfx4	ENSMUST00000036854.4|Efhd2|ENSMUSG00000040659.4|EF hand domain containing 2
mm39_v1_chr1_+_75213082_75213113	0.14168712814723047	Rfx3_Rfx1_Rfx4	ENSMUST00000055223.14|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2	ENSMUST00000082158.13|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2	ENSMUST00000188346.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr5_+_136937035_136937056	0.14097523828473482	Rfx3_Rfx1_Rfx4	ENSMUST00000199101.5|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22	ENSMUST00000200153.5|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22
mm39_v1_chr9_-_109946398_109946414	0.14090939257310436	Rfx3_Rfx1_Rfx4	ENSMUST00000200066.5|Dhx30|ENSMUSG00000032480.18|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm39_v1_chr7_-_29931612_29931697	0.14003063131025048	Rfx3_Rfx1_Rfx4	ENSMUST00000006254.6|Tbcb|ENSMUSG00000006095.13|tubulin folding cofactor B
mm39_v1_chr7_-_118455208_118455237	0.1394404245084505	Rfx3_Rfx1_Rfx4	ENSMUST00000126792.9|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1	ENSMUST00000116280.9|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1	ENSMUST00000063607.12|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1
mm39_v1_chr4_+_117407517_117407606	0.13902840242753955	Rfx3_Rfx1_Rfx4	ENSMUST00000037127.15|Eri3|ENSMUSG00000033423.17|exoribonuclease 3
mm39_v1_chr9_-_61854050_61854061	0.13809796674831284	Rfx3_Rfx1_Rfx4	ENSMUST00000034815.9|Kif23|ENSMUSG00000032254.11|kinesin family member 23
mm39_v1_chr16_+_31918707_31918791	0.1376116328154545	Rfx3_Rfx1_Rfx4	ENSMUST00000042869.7|Cep19|ENSMUSG00000035790.16|centrosomal protein 19
mm39_v1_chr5_-_139446244_139446257	0.13704974080903573	Rfx3_Rfx1_Rfx4	ENSMUST00000066052.12|3110082I17Rik|ENSMUSG00000053553.12|RIKEN cDNA 3110082I17 gene
mm39_v1_chr7_+_138792890_138792909	0.13585664527710647	Rfx3_Rfx1_Rfx4	ENSMUST00000016124.15|Lrrc27|ENSMUSG00000015980.15|leucine rich repeat containing 27
mm39_v1_chr18_-_35795233_35795255	0.1346641433866934	Rfx3_Rfx1_Rfx4	ENSMUST00000025209.12|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000096573.4|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr7_+_25380583_25380616	0.1343667573461598	Rfx3_Rfx1_Rfx4	ENSMUST00000108403.4|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr9_-_106563002_106563024	0.1332493505187482	Rfx3_Rfx1_Rfx4	ENSMUST00000163441.8|Tex264|ENSMUSG00000040813.17|testis expressed gene 264
mm39_v1_chr1_+_135945705_135945781	0.13284037946164892	Rfx3_Rfx1_Rfx4	ENSMUST00000063719.15|Tmem9|ENSMUSG00000026411.18|transmembrane protein 9
mm39_v1_chr2_-_105833894_105833894	0.13189433636056058	Rfx3_Rfx1_Rfx4	ENSMUST00000102555.11|Dnajc24|ENSMUSG00000027166.15|DnaJ heat shock protein family (Hsp40) member C24
mm39_v1_chr12_+_17594795_17594893	0.13133170231593244	Rfx3_Rfx1_Rfx4	ENSMUST00000171737.3|Odc1|ENSMUSG00000011179.9|ornithine decarboxylase, structural 1
mm39_v1_chr2_+_36026395_36026441	0.1312234841330686	Rfx3_Rfx1_Rfx4	ENSMUST00000028250.9|Mrrf|ENSMUSG00000026887.10|mitochondrial ribosome recycling factor
mm39_v1_chr7_-_79882501_79882590	0.1309430812712211	Rfx3_Rfx1_Rfx4	ENSMUST00000065163.15|Cib1|ENSMUSG00000030538.16|calcium and integrin binding 1 (calmyrin)
mm39_v1_chr6_+_117883783_117883810	0.12991365252253106	Rfx3_Rfx1_Rfx4	ENSMUST00000177918.8|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F	ENSMUST00000163168.9|Hnrnpf|ENSMUSG00000042079.14|heterogeneous nuclear ribonucleoprotein F
mm39_v1_chr19_+_6952319_6952371	0.12986258971327758	Rfx3_Rfx1_Rfx4	ENSMUST00000070850.8|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr1_+_75213114_75213165	0.12973914304401685	Rfx3_Rfx1_Rfx4	ENSMUST00000188290.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr11_+_90528953_90529036	0.12965952661534572	Rfx3_Rfx1_Rfx4	ENSMUST00000020851.15|Cox11|ENSMUSG00000020544.15|cytochrome c oxidase assembly protein 11, copper chaperone
mm39_v1_chr8_+_72044802_72044866	0.12956079048620647	Rfx3_Rfx1_Rfx4	ENSMUST00000034264.11|Pgls|ENSMUSG00000031807.11|6-phosphogluconolactonase
mm39_v1_chr9_+_44309727_44309771	0.12879699723408503	Rfx3_Rfx1_Rfx4	ENSMUST00000213268.2|Slc37a4|ENSMUSG00000032114.10|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm39_v1_chr18_+_31742565_31742565	0.12854297498694048	Rfx3_Rfx1_Rfx4	ENSMUST00000164667.2|B930094E09Rik|ENSMUSG00000092124.2|RIKEN cDNA B930094E09 gene
mm39_v1_chr4_-_149858694_149858744	0.1284164312952786	Rfx3_Rfx1_Rfx4	ENSMUST00000105686.3|Slc25a33|ENSMUSG00000028982.10|solute carrier family 25, member 33
mm39_v1_chr4_+_138161958_138162060	0.1279132448043293	Rfx3_Rfx1_Rfx4	ENSMUST00000044058.11|Mul1|ENSMUSG00000041241.13|mitochondrial ubiquitin ligase activator of NFKB 1	ENSMUST00000105813.8|Mul1|ENSMUSG00000041241.13|mitochondrial ubiquitin ligase activator of NFKB 1	ENSMUST00000105815.2|Mul1|ENSMUSG00000041241.13|mitochondrial ubiquitin ligase activator of NFKB 1
mm39_v1_chr9_+_8544143_8544224	0.1275349121026332	Rfx3_Rfx1_Rfx4	ENSMUST00000050433.8|Trpc6|ENSMUSG00000031997.10|transient receptor potential cation channel, subfamily C, member 6	ENSMUST00000217462.2|Trpc6|ENSMUSG00000031997.10|transient receptor potential cation channel, subfamily C, member 6
mm39_v1_chr10_-_13744676_13744748	0.12656496720131608	Rfx3_Rfx1_Rfx4	ENSMUST00000019942.6|Aig1|ENSMUSG00000019806.14|androgen-induced 1	ENSMUST00000162610.8|Aig1|ENSMUSG00000019806.14|androgen-induced 1
mm39_v1_chr10_-_128383508_128383643	0.1262130562269649	Rfx3_Rfx1_Rfx4	ENSMUST00000152539.8|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10	ENSMUST00000133458.2|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10	ENSMUST00000040572.10|Zc3h10|ENSMUSG00000039810.12|zinc finger CCCH type containing 10
mm39_v1_chr12_+_72488625_72488640	0.12489639990352558	Rfx3_Rfx1_Rfx4	ENSMUST00000161284.3|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9	ENSMUST00000162159.8|Lrrc9|ENSMUSG00000021090.17|leucine rich repeat containing 9
mm39_v1_chr2_-_151586063_151586125	0.12452588358743641	Rfx3_Rfx1_Rfx4	ENSMUST00000109869.2|Psmf1|ENSMUSG00000032869.16|proteasome (prosome, macropain) inhibitor subunit 1
mm39_v1_chr19_-_4889314_4889368	0.1243102231589594	Rfx3_Rfx1_Rfx4	ENSMUST00000235245.2|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase	ENSMUST00000037246.7|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase
mm39_v1_chr12_-_31684588_31684679	0.12385274346285118	Rfx3_Rfx1_Rfx4	ENSMUST00000020979.9|Bcap29|ENSMUSG00000020650.16|B cell receptor associated protein 29	ENSMUST00000177962.9|Bcap29|ENSMUSG00000020650.16|B cell receptor associated protein 29
mm39_v1_chr15_+_76555838_76555909	0.12314077772866919	Rfx3_Rfx1_Rfx4	ENSMUST00000135388.3|Ppp1r16a|ENSMUSG00000033819.17|protein phosphatase 1, regulatory subunit 16A
mm39_v1_chr17_+_36190662_36190714	0.12284101054978167	Rfx3_Rfx1_Rfx4	ENSMUST00000025292.15|Dhx16|ENSMUSG00000024422.15|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm39_v1_chr19_+_10554799_10554825	0.12256264577289706	Rfx3_Rfx1_Rfx4	ENSMUST00000237564.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3	ENSMUST00000236743.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3	ENSMUST00000235271.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3	ENSMUST00000168445.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3	ENSMUST00000237641.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3	ENSMUST00000236352.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3
mm39_v1_chr2_+_163500290_163500430	0.12250384700011546	Rfx3_Rfx1_Rfx4	ENSMUST00000164399.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000064703.13|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000099105.9|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000152418.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000126182.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma	ENSMUST00000131228.8|Pkig|ENSMUSG00000035268.15|protein kinase inhibitor, gamma
mm39_v1_chr7_-_140461769_140461784	0.12174517769553224	Rfx3_Rfx1_Rfx4	ENSMUST00000106048.10|Sirt3|ENSMUSG00000025486.18|sirtuin 3	ENSMUST00000147331.9|Sirt3|ENSMUSG00000025486.18|sirtuin 3	ENSMUST00000137710.2|Sirt3|ENSMUSG00000025486.18|sirtuin 3
mm39_v1_chr4_+_140941259_140941309	0.1215381311949063	Rfx3_Rfx1_Rfx4	ENSMUST00000097813.3|Cplane2|ENSMUSG00000073733.5|ciliogenesis and planar polarity effector 2
mm39_v1_chr6_+_48570817_48570834	0.12141235886931552	Rfx3_Rfx1_Rfx4	ENSMUST00000154010.8|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000009420.15|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000163452.7|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000118229.2|Repin1|ENSMUSG00000052751.17|replication initiator 1	ENSMUST00000135151.3|Repin1|ENSMUSG00000052751.17|replication initiator 1
mm39_v1_chr6_+_83086021_83086095	0.1205745940032039	Rfx3_Rfx1_Rfx4	ENSMUST00000113938.5|Mrpl53|ENSMUSG00000030037.10|mitochondrial ribosomal protein L53
mm39_v1_chr3_+_67281449_67281487	0.12027746123830624	Rfx3_Rfx1_Rfx4	ENSMUST00000061322.10|Mlf1|ENSMUSG00000048416.16|myeloid leukemia factor 1
mm39_v1_chr3_-_89121147_89121230	0.1202307371628928	Rfx3_Rfx1_Rfx4	ENSMUST00000173477.8|Mtx1|ENSMUSG00000064068.16|metaxin 1	ENSMUST00000119222.9|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr13_-_48746836_48746881	0.11903538581393278	Rfx3_Rfx1_Rfx4	ENSMUST00000238995.2|Ptpdc1|ENSMUSG00000038042.12|protein tyrosine phosphatase domain containing 1
mm39_v1_chr19_+_5100475_5100509	0.11829818125769802	Rfx3_Rfx1_Rfx4	ENSMUST00000225427.2|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1
mm39_v1_chr7_-_118454836_118454918	0.1181806108531199	Rfx3_Rfx1_Rfx4	ENSMUST00000106549.9|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1	ENSMUST00000152309.3|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1	ENSMUST00000033277.9|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1
mm39_v1_chr10_-_62414163_62414230	0.11812592051597673	Rfx3_Rfx1_Rfx4	ENSMUST00000162525.8|Kifbp|ENSMUSG00000036955.17|kinesin family binding protein	ENSMUST00000159704.8|Kifbp|ENSMUSG00000036955.17|kinesin family binding protein
mm39_v1_chr10_+_126899396_126899407	0.1172311712136448	Rfx3_Rfx1_Rfx4	ENSMUST00000006911.12|Cdk4|ENSMUSG00000006728.13|cyclin-dependent kinase 4
mm39_v1_chr2_-_30068433_30068478	0.11640977663873966	Rfx3_Rfx1_Rfx4	ENSMUST00000100220.5|Spout1|ENSMUSG00000039660.17|SPOUT domain containing methyltransferase 1
mm39_v1_chr7_-_140462221_140462244	0.11623034574971404	Rfx3_Rfx1_Rfx4	ENSMUST00000026559.14|Sirt3|ENSMUSG00000025486.18|sirtuin 3
mm39_v1_chr5_+_136937083_136937097	0.11563358389740629	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.10|Ift22|ENSMUSG00000007987.13|intraflagellar transport 22
mm39_v1_chr19_-_10282218_10282318	0.11521167952756478	Rfx3_Rfx1_Rfx4	ENSMUST00000039327.11|Dagla|ENSMUSG00000035735.11|diacylglycerol lipase, alpha
mm39_v1_chr16_-_4340920_4340939	0.11473041608545718	Rfx3_Rfx1_Rfx4	ENSMUST00000090500.10|Srl|ENSMUSG00000022519.15|sarcalumenin	ENSMUST00000023161.8|Srl|ENSMUSG00000022519.15|sarcalumenin
mm39_v1_chr8_+_125589772_125589828	0.11443559703091688	Rfx3_Rfx1_Rfx4	ENSMUST00000034466.10|Gnpat|ENSMUSG00000031985.10|glyceronephosphate O-acyltransferase	ENSMUST00000161986.2|Gnpat|ENSMUSG00000031985.10|glyceronephosphate O-acyltransferase
mm39_v1_chr2_-_79259235_79259339	0.11382976598589994	Rfx3_Rfx1_Rfx4	ENSMUST00000143974.2|Cerkl|ENSMUSG00000075256.10|ceramide kinase-like
mm39_v1_chr3_-_154798982_154799040	0.11360903432854724	Rfx3_Rfx1_Rfx4	ENSMUST00000066568.6|Fpgt|ENSMUSG00000053870.8|fucose-1-phosphate guanylyltransferase
mm39_v1_chr6_+_67838100_67838143	0.1130302948046422	Rfx3_Rfx1_Rfx4	ENSMUST00000200586.2|Igkv17-127|ENSMUSG00000076508.4|immunoglobulin kappa variable 17-127	ENSMUST00000103309.3|Igkv17-127|ENSMUSG00000076508.4|immunoglobulin kappa variable 17-127
mm39_v1_chr16_-_43709968_43710048	0.11293900214471943	Rfx3_Rfx1_Rfx4	ENSMUST00000023387.14|Qtrt2|ENSMUSG00000022704.17|queuine tRNA-ribosyltransferase accessory subunit 2
mm39_v1_chr7_+_100145192_100145286	0.11286315345642722	Rfx3_Rfx1_Rfx4	ENSMUST00000133044.3|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)
mm39_v1_chr1_+_164103127_164103229	0.11245727333146377	Rfx3_Rfx1_Rfx4	ENSMUST00000027867.7|Ccdc181|ENSMUSG00000026578.7|coiled-coil domain containing 181
mm39_v1_chr18_+_48178397_48178415	0.1124322290828611	Rfx3_Rfx1_Rfx4	ENSMUST00000076155.6|Eno1b|ENSMUSG00000059040.6|enolase 1B, retrotransposed
mm39_v1_chr11_+_97692738_97692824	0.11212758792699988	Rfx3_Rfx1_Rfx4	ENSMUST00000127033.9|Lasp1|ENSMUSG00000038366.16|LIM and SH3 protein 1
mm39_v1_chr17_-_79244460_79244504	0.11206150278604594	Rfx3_Rfx1_Rfx4	ENSMUST00000024885.10|Cebpz|ENSMUSG00000024081.10|CCAAT/enhancer binding protein zeta
mm39_v1_chr5_+_124250360_124250420	0.11178269413414366	Rfx3_Rfx1_Rfx4	ENSMUST00000024470.13|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000119269.6|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000196627.5|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000199457.5|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2	ENSMUST00000198505.2|Ogfod2|ENSMUSG00000023707.14|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm39_v1_chr9_-_42383494_42383561	0.11167616459880386	Rfx3_Rfx1_Rfx4	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr12_+_87193922_87193974	0.11132665567237028	Rfx3_Rfx1_Rfx4	ENSMUST00000222885.2|Gstz1|ENSMUSG00000021033.12|glutathione transferase zeta 1 (maleylacetoacetate isomerase)
mm39_v1_chr5_-_129085610_129085660	0.11090963835059295	Rfx3_Rfx1_Rfx4	ENSMUST00000031378.14|Stx2|ENSMUSG00000029428.14|syntaxin 2
mm39_v1_chr15_-_98660873_98661071	0.10951906558376093	Rfx3_Rfx1_Rfx4	ENSMUST00000156572.3|Arf3|ENSMUSG00000051853.11|ADP-ribosylation factor 3
mm39_v1_chr10_-_39775182_39775266	0.10890541262520742	Rfx3_Rfx1_Rfx4	ENSMUST00000178045.9|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4	ENSMUST00000178563.3|Mfsd4b4|ENSMUSG00000096687.9|major facilitator superfamily domain containing 4B4
mm39_v1_chr4_+_118477994_118478105	0.10877275194782089	Rfx3_Rfx1_Rfx4	ENSMUST00000030501.15|Ebna1bp2|ENSMUSG00000028729.16|EBNA1 binding protein 2
mm39_v1_chr7_+_25380195_25380258	0.10833569458725145	Rfx3_Rfx1_Rfx4	ENSMUST00000205658.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr7_+_16472335_16472401	0.10827337989427276	Rfx3_Rfx1_Rfx4	ENSMUST00000086112.8|Ap2s1|ENSMUSG00000008036.12|adaptor-related protein complex 2, sigma 1 subunit	ENSMUST00000205607.2|Ap2s1|ENSMUSG00000008036.12|adaptor-related protein complex 2, sigma 1 subunit
mm39_v1_chr17_-_45903494_45903507	0.1081579373815938	Rfx3_Rfx1_Rfx4	ENSMUST00000163492.8|Slc29a1|ENSMUSG00000023942.16|solute carrier family 29 (nucleoside transporters), member 1
mm39_v1_chr15_+_76555815_76555837	0.10802381445894335	Rfx3_Rfx1_Rfx4	ENSMUST00000037551.15|Ppp1r16a|ENSMUSG00000033819.17|protein phosphatase 1, regulatory subunit 16A
mm39_v1_chr18_-_24153363_24153427	0.10731623629960456	Rfx3_Rfx1_Rfx4	ENSMUST00000153337.2|Zfp24|ENSMUSG00000051469.15|zinc finger protein 24	ENSMUST00000148525.2|Zfp24|ENSMUSG00000051469.15|zinc finger protein 24
mm39_v1_chr12_-_21467437_21467638	0.10685048069478459	Rfx3_Rfx1_Rfx4	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr18_-_35795175_35795228	0.10629131106379233	Rfx3_Rfx1_Rfx4	ENSMUST00000236574.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000236971.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr17_+_28396103_28396214	0.10599432341516317	Rfx3_Rfx1_Rfx4	ENSMUST00000073534.10|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523
mm39_v1_chr9_-_21671571_21671614	0.10542744192438465	Rfx3_Rfx1_Rfx4	ENSMUST00000217382.2|Spc24|ENSMUSG00000074476.7|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	ENSMUST00000214149.2|Spc24|ENSMUSG00000074476.7|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	ENSMUST00000098942.6|Spc24|ENSMUSG00000074476.7|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	ENSMUST00000216057.2|Spc24|ENSMUSG00000074476.7|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
mm39_v1_chr19_-_7218512_7218566	0.10537369701837088	Rfx3_Rfx1_Rfx4	ENSMUST00000025675.11|Naa40|ENSMUSG00000024764.11|N(alpha)-acetyltransferase 40, NatD catalytic subunit
mm39_v1_chr8_-_125589697_125589859	0.10483847342146643	Rfx3_Rfx1_Rfx4	ENSMUST00000034465.9|2810004N23Rik|ENSMUSG00000031984.9|RIKEN cDNA 2810004N23 gene
mm39_v1_chr3_+_103875261_103875426	0.10457394676480374	Rfx3_Rfx1_Rfx4	ENSMUST00000117150.8|Phtf1|ENSMUSG00000058388.15|putative homeodomain transcription factor 1
mm39_v1_chr14_-_25927674_25927674	0.10435939639188263	Rfx3_Rfx1_Rfx4	ENSMUST00000100811.6|Tmem254a|ENSMUSG00000072676.13|transmembrane protein 254a
mm39_v1_chr3_+_67281424_67281435	0.10412358849825215	Rfx3_Rfx1_Rfx4	ENSMUST00000077916.12|Mlf1|ENSMUSG00000048416.16|myeloid leukemia factor 1
mm39_v1_chr9_+_108660989_108661064	0.10384379792683839	Rfx3_Rfx1_Rfx4	ENSMUST00000192307.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000193560.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000194875.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2
mm39_v1_chr17_+_28396370_28396432	0.1038080916914065	Rfx3_Rfx1_Rfx4	ENSMUST00000002318.8|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523	ENSMUST00000233904.2|Zfp523|ENSMUSG00000024220.15|zinc finger protein 523
mm39_v1_chr8_+_86026318_86026420	0.10336951563462972	Rfx3_Rfx1_Rfx4	ENSMUST00000170141.3|Orc6|ENSMUSG00000031697.13|origin recognition complex, subunit 6	ENSMUST00000034132.13|Orc6|ENSMUSG00000031697.13|origin recognition complex, subunit 6
mm39_v1_chr13_-_92620507_92620547	0.10302726709587531	Rfx3_Rfx1_Rfx4	ENSMUST00000040106.9|Fam151b|ENSMUSG00000034334.9|family with sequence similarity 151, member B
mm39_v1_chr7_-_24950145_24950186	0.10172475179372238	Rfx3_Rfx1_Rfx4	ENSMUST00000116343.3|Erf|ENSMUSG00000040857.16|Ets2 repressor factor	ENSMUST00000045847.15|Erf|ENSMUSG00000040857.16|Ets2 repressor factor
mm39_v1_chr4_+_6365650_6365688	0.10069623020106311	Rfx3_Rfx1_Rfx4	ENSMUST00000029912.11|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000103008.12|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein
mm39_v1_chr9_-_50639367_50639430	0.09971000481552011	Rfx3_Rfx1_Rfx4	ENSMUST00000117646.8|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1
mm39_v1_chr14_-_31362835_31362907	0.0993709942685767	Rfx3_Rfx1_Rfx4	ENSMUST00000167066.8|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1	ENSMUST00000127204.9|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1
mm39_v1_chr8_-_120301883_120301944	0.09930211831024154	Rfx3_Rfx1_Rfx4	ENSMUST00000212198.2|Hsdl1|ENSMUSG00000034189.6|hydroxysteroid dehydrogenase like 1	ENSMUST00000212065.2|Hsdl1|ENSMUSG00000034189.6|hydroxysteroid dehydrogenase like 1	ENSMUST00000036049.6|Hsdl1|ENSMUSG00000034189.6|hydroxysteroid dehydrogenase like 1
mm39_v1_chr4_+_6365694_6365722	0.09728926194556387	Rfx3_Rfx1_Rfx4	ENSMUST00000175769.8|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000140830.8|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000108374.8|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein
mm39_v1_chr14_+_54491637_54491704	0.0970508978526466	Rfx3_Rfx1_Rfx4	ENSMUST00000180359.8|Abhd4|ENSMUSG00000040997.15|abhydrolase domain containing 4	ENSMUST00000199338.2|Abhd4|ENSMUSG00000040997.15|abhydrolase domain containing 4
mm39_v1_chr8_+_72044873_72044935	0.09698384291726286	Rfx3_Rfx1_Rfx4	ENSMUST00000138742.8|Pgls|ENSMUSG00000031807.11|6-phosphogluconolactonase	ENSMUST00000143441.2|Pgls|ENSMUSG00000031807.11|6-phosphogluconolactonase
mm39_v1_chr11_-_107228382_107228463	0.0967971629027774	Rfx3_Rfx1_Rfx4	ENSMUST00000040380.13|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr8_+_86026261_86026299	0.09514511016018401	Rfx3_Rfx1_Rfx4	ENSMUST00000211597.2|Orc6|ENSMUSG00000031697.13|origin recognition complex, subunit 6	ENSMUST00000211396.2|Orc6|ENSMUSG00000031697.13|origin recognition complex, subunit 6
mm39_v1_chr13_+_24986003_24986003	0.09261832161843606	Rfx3_Rfx1_Rfx4	ENSMUST00000155575.2|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr7_-_44397730_44397815	0.09235443885650836	Rfx3_Rfx1_Rfx4	ENSMUST00000118162.8|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473	ENSMUST00000140599.9|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473	ENSMUST00000120798.8|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473
mm39_v1_chr7_-_16761790_16761846	0.0921304308622697	Rfx3_Rfx1_Rfx4	ENSMUST00000003183.12|Ppp5c|ENSMUSG00000003099.12|protein phosphatase 5, catalytic subunit
mm39_v1_chr1_+_75213171_75213200	0.09185153345715316	Rfx3_Rfx1_Rfx4	ENSMUST00000187058.7|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr7_-_125090540_125090663	0.0918436399571464	Rfx3_Rfx1_Rfx4	ENSMUST00000138616.3|Nsmce1|ENSMUSG00000030750.14|NSE1 homolog, SMC5-SMC6 complex component
mm39_v1_chr10_-_80736579_80736803	0.09167527113225157	Rfx3_Rfx1_Rfx4	ENSMUST00000218481.2|Timm13|ENSMUSG00000020219.8|translocase of inner mitochondrial membrane 13	ENSMUST00000219896.2|Timm13|ENSMUSG00000020219.8|translocase of inner mitochondrial membrane 13	ENSMUST00000020440.7|Timm13|ENSMUSG00000020219.8|translocase of inner mitochondrial membrane 13
mm39_v1_chrX_+_7750558_7750617	0.09143111148627273	Rfx3_Rfx1_Rfx4	ENSMUST00000208640.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000207114.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000208633.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000208397.2|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000153620.3|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000123277.8|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2
mm39_v1_chr12_+_85266249_85266320	0.09074607581286782	Rfx3_Rfx1_Rfx4	ENSMUST00000004910.12|Eif2b2|ENSMUSG00000004788.12|eukaryotic translation initiation factor 2B, subunit 2 beta	ENSMUST00000140900.8|Eif2b2|ENSMUSG00000004788.12|eukaryotic translation initiation factor 2B, subunit 2 beta	ENSMUST00000136495.3|Eif2b2|ENSMUSG00000004788.12|eukaryotic translation initiation factor 2B, subunit 2 beta
mm39_v1_chr2_-_118987305_118987515	0.09049947333894666	Rfx3_Rfx1_Rfx4	ENSMUST00000135419.8|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3	ENSMUST00000129351.2|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3	ENSMUST00000139519.2|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3	ENSMUST00000094695.12|Rmdn3|ENSMUSG00000070730.12|regulator of microtubule dynamics 3
mm39_v1_chr18_-_70663382_70663505	0.09042499429594941	Rfx3_Rfx1_Rfx4	ENSMUST00000043286.15|Poli|ENSMUSG00000038425.19|polymerase (DNA directed), iota
mm39_v1_chr17_-_34822649_34822676	0.09040532124433177	Rfx3_Rfx1_Rfx4	ENSMUST00000015622.8|Rnf5|ENSMUSG00000015478.14|ring finger protein 5
mm39_v1_chr11_+_109541400_109541405	0.08984058213421393	Rfx3_Rfx1_Rfx4	ENSMUST00000106676.8|Prkar1a|ENSMUSG00000020612.17|protein kinase, cAMP dependent regulatory, type I, alpha
mm39_v1_chr8_-_106223502_106223701	0.08962726319630976	Rfx3_Rfx1_Rfx4	ENSMUST00000212303.2|Zdhhc1|ENSMUSG00000039199.7|zinc finger, DHHC domain containing 1
mm39_v1_chr4_-_12087911_12087991	0.08939062486952523	Rfx3_Rfx1_Rfx4	ENSMUST00000050686.10|Tmem67|ENSMUSG00000049488.15|transmembrane protein 67
mm39_v1_chr19_+_10554510_10554541	0.08925999562360803	Rfx3_Rfx1_Rfx4	ENSMUST00000237814.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3
mm39_v1_chr11_+_58062467_58062514	0.08920689541541998	Rfx3_Rfx1_Rfx4	ENSMUST00000020820.2|Mrpl22|ENSMUSG00000020514.9|mitochondrial ribosomal protein L22
mm39_v1_chr9_-_59260713_59260791	0.08875032704858304	Rfx3_Rfx1_Rfx4	ENSMUST00000026265.8|Bbs4|ENSMUSG00000025235.9|Bardet-Biedl syndrome 4 (human)
mm39_v1_chr17_-_45903188_45903337	0.08852175957238469	Rfx3_Rfx1_Rfx4	ENSMUST00000164769.8|Slc29a1|ENSMUSG00000023942.16|solute carrier family 29 (nucleoside transporters), member 1
mm39_v1_chr8_-_96161414_96161458	0.08706874632232575	Rfx3_Rfx1_Rfx4	ENSMUST00000211908.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr6_+_65019574_65019651	0.08690426749702193	Rfx3_Rfx1_Rfx4	ENSMUST00000031984.9|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	ENSMUST00000205118.3|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm39_v1_chrX_+_7750483_7750552	0.0868903852410672	Rfx3_Rfx1_Rfx4	ENSMUST00000115663.10|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2	ENSMUST00000096514.11|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2
mm39_v1_chr16_-_91723870_91723870	0.0861728790616709	Rfx3_Rfx1_Rfx4	ENSMUST00000159295.8|Atp5o|ENSMUSG00000116933.2|ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
mm39_v1_chr2_-_26030453_26030540	0.08604252893558084	Rfx3_Rfx1_Rfx4	ENSMUST00000133808.2|Tmem250-ps|ENSMUSG00000087679.3|transmembrane protein 250, pseudogene
mm39_v1_chr4_-_141518202_141518252	0.08526409421044602	Rfx3_Rfx1_Rfx4	ENSMUST00000038014.11|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16	ENSMUST00000153880.2|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16
mm39_v1_chr4_+_40722911_40723001	0.08442722358179419	Rfx3_Rfx1_Rfx4	ENSMUST00000164233.8|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1	ENSMUST00000137246.8|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1	ENSMUST00000125442.8|Dnaja1|ENSMUSG00000028410.14|DnaJ heat shock protein family (Hsp40) member A1
mm39_v1_chrX_-_135642025_135642101	0.0843867815871497	Rfx3_Rfx1_Rfx4	ENSMUST00000155207.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2	ENSMUST00000080411.13|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2	ENSMUST00000169418.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2
mm39_v1_chr9_-_106562852_106562881	0.0841280481065874	Rfx3_Rfx1_Rfx4	ENSMUST00000169068.8|Tex264|ENSMUSG00000040813.17|testis expressed gene 264
mm39_v1_chr10_-_86541349_86541373	0.08410494973572019	Rfx3_Rfx1_Rfx4	ENSMUST00000020238.14|Hsp90b1|ENSMUSG00000020048.14|heat shock protein 90, beta (Grp94), member 1
mm39_v1_chr8_-_4309257_4309284	0.08357434278703701	Rfx3_Rfx1_Rfx4	ENSMUST00000053252.9|Ctxn1|ENSMUSG00000048644.9|cortexin 1
mm39_v1_chr13_+_91609264_91609307	0.08322963588196954	Rfx3_Rfx1_Rfx4	ENSMUST00000231481.2|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2
mm39_v1_chr16_+_4559426_4559452	0.08321408313121915	Rfx3_Rfx1_Rfx4	ENSMUST00000120232.8|Hmox2|ENSMUSG00000004070.16|heme oxygenase 2
mm39_v1_chrX_+_7750261_7750294	0.08296190770697631	Rfx3_Rfx1_Rfx4	ENSMUST00000115660.12|Slc35a2|ENSMUSG00000031156.19|solute carrier family 35 (UDP-galactose transporter), member A2
mm39_v1_chr8_-_91544021_91544021	0.0828527441158396	Rfx3_Rfx1_Rfx4	ENSMUST00000209208.2|Gm19935|ENSMUSG00000110332.2|predicted gene, 19935
mm39_v1_chr18_-_70663209_70663355	0.0828042524459182	Rfx3_Rfx1_Rfx4	ENSMUST00000161542.8|Poli|ENSMUSG00000038425.19|polymerase (DNA directed), iota	ENSMUST00000159389.8|Poli|ENSMUSG00000038425.19|polymerase (DNA directed), iota
mm39_v1_chr10_+_34173426_34173509	0.08263355473874939	Rfx3_Rfx1_Rfx4	ENSMUST00000047935.8|Tspyl4|ENSMUSG00000039485.9|TSPY-like 4
mm39_v1_chr16_+_31918599_31918676	0.08239670657756584	Rfx3_Rfx1_Rfx4	ENSMUST00000115168.9|Cep19|ENSMUSG00000035790.16|centrosomal protein 19
mm39_v1_chr6_+_115830431_115830596	0.08226121778767027	Rfx3_Rfx1_Rfx4	ENSMUST00000112925.8|Ift122|ENSMUSG00000030323.14|intraflagellar transport 122	ENSMUST00000038234.13|Ift122|ENSMUSG00000030323.14|intraflagellar transport 122	ENSMUST00000112923.7|Ift122|ENSMUSG00000030323.14|intraflagellar transport 122
mm39_v1_chr12_-_55867941_55867995	0.08181829610387661	Rfx3_Rfx1_Rfx4	ENSMUST00000085385.7|Ralgapa1|ENSMUSG00000021027.18|Ral GTPase activating protein, alpha subunit 1	ENSMUST00000110687.8|Ralgapa1|ENSMUSG00000021027.18|Ral GTPase activating protein, alpha subunit 1
mm39_v1_chr12_+_104998895_104998964	0.08112311722434191	Rfx3_Rfx1_Rfx4	ENSMUST00000223244.2|Glrx5|ENSMUSG00000021102.5|glutaredoxin 5	ENSMUST00000021522.5|Glrx5|ENSMUSG00000021102.5|glutaredoxin 5
mm39_v1_chr13_+_55612050_55612132	0.08107735514564024	Rfx3_Rfx1_Rfx4	ENSMUST00000046533.9|Prr7|ENSMUSG00000034686.9|proline rich 7 (synaptic)
mm39_v1_chr11_-_97520511_97520541	0.08086149711626255	Rfx3_Rfx1_Rfx4	ENSMUST00000052281.6|Epop|ENSMUSG00000043439.6|elongin BC and polycomb repressive complex 2 associated protein
mm39_v1_chr5_-_149559737_149559756	0.07934211759707849	Rfx3_Rfx1_Rfx4	ENSMUST00000200805.4|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr19_-_57185988_57186063	0.07898751759027978	Rfx3_Rfx1_Rfx4	ENSMUST00000099294.9|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr9_-_45923908_45923993	0.07898727804580769	Rfx3_Rfx1_Rfx4	ENSMUST00000217514.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm39_v1_chr2_-_36026614_36026643	0.07883351082137534	Rfx3_Rfx1_Rfx4	ENSMUST00000122456.8|Rbm18|ENSMUSG00000026889.13|RNA binding motif protein 18
mm39_v1_chr13_-_99062882_99062897	0.07831232677059831	Rfx3_Rfx1_Rfx4	ENSMUST00000109401.8|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr17_-_26056056_26056269	0.07790544895309535	Rfx3_Rfx1_Rfx4	ENSMUST00000183929.8|Rhbdl1|ENSMUSG00000025735.14|rhomboid like 1	ENSMUST00000184865.2|Rhbdl1|ENSMUSG00000025735.14|rhomboid like 1	ENSMUST00000026831.14|Rhbdl1|ENSMUSG00000025735.14|rhomboid like 1
mm39_v1_chr7_-_118455477_118455596	0.07786053540368851	Rfx3_Rfx1_Rfx4	ENSMUST00000106550.11|Knop1|ENSMUSG00000030980.18|lysine rich nucleolar protein 1
mm39_v1_chr1_+_179495767_179495833	0.07762796455115245	Rfx3_Rfx1_Rfx4	ENSMUST00000040538.10|Sccpdh|ENSMUSG00000038936.14|saccharopine dehydrogenase (putative)
mm39_v1_chr4_-_128856213_128856242	0.07758913991361574	Rfx3_Rfx1_Rfx4	ENSMUST00000119354.8|Azin2|ENSMUSG00000028789.17|antizyme inhibitor 2	ENSMUST00000106068.8|Azin2|ENSMUSG00000028789.17|antizyme inhibitor 2	ENSMUST00000030581.10|Azin2|ENSMUSG00000028789.17|antizyme inhibitor 2
mm39_v1_chr2_-_145776934_145776934	0.07638770709032086	Rfx3_Rfx1_Rfx4	ENSMUST00000001818.5|Crnkl1|ENSMUSG00000001767.6|crooked neck pre-mRNA splicing factor 1
mm39_v1_chr11_-_100510992_100511036	0.07637789288577701	Rfx3_Rfx1_Rfx4	ENSMUST00000014339.15|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239490.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239410.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7
mm39_v1_chr5_-_31448370_31448488	0.07541776141507656	Rfx3_Rfx1_Rfx4	ENSMUST00000041565.11|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172	ENSMUST00000201809.2|Ift172|ENSMUSG00000038564.12|intraflagellar transport 172
mm39_v1_chr2_-_5900130_5900243	0.07538955598566857	Rfx3_Rfx1_Rfx4	ENSMUST00000026926.5|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000193792.6|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000102981.10|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)
mm39_v1_chr4_+_10874498_10874526	0.07501602661271507	Rfx3_Rfx1_Rfx4	ENSMUST00000080517.14|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr6_+_91450677_91450769	0.07493775630728927	Rfx3_Rfx1_Rfx4	ENSMUST00000032183.6|Tmem43|ENSMUSG00000030095.11|transmembrane protein 43
mm39_v1_chr19_-_6919755_6919818	0.0747140349191486	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.10|Gpr137|ENSMUSG00000024958.14|G protein-coupled receptor 137
mm39_v1_chr5_-_139446260_139446305	0.07405238132924045	Rfx3_Rfx1_Rfx4	ENSMUST00000198474.2|3110082I17Rik|ENSMUSG00000053553.12|RIKEN cDNA 3110082I17 gene
mm39_v1_chr8_+_84703495_84703528	0.07385345751792555	Rfx3_Rfx1_Rfx4	ENSMUST00000211558.2|Prkaca|ENSMUSG00000005469.11|protein kinase, cAMP dependent, catalytic, alpha
mm39_v1_chr6_+_55180366_55180444	0.07346842696269439	Rfx3_Rfx1_Rfx4	ENSMUST00000204842.3|Mindy4|ENSMUSG00000038022.12|MINDY lysine 48 deubiquitinase 4	ENSMUST00000053094.8|Mindy4|ENSMUSG00000038022.12|MINDY lysine 48 deubiquitinase 4
mm39_v1_chrX_-_133501874_133501902	0.07340294085386975	Rfx3_Rfx1_Rfx4	ENSMUST00000033621.8|Gla|ENSMUSG00000031266.8|galactosidase, alpha
mm39_v1_chr16_-_59459745_59459806	0.07252019348542882	Rfx3_Rfx1_Rfx4	ENSMUST00000099646.10|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6
mm39_v1_chr17_+_35268942_35268942	0.07242763924989991	Rfx3_Rfx1_Rfx4	ENSMUST00000007257.10|Clic1|ENSMUSG00000007041.10|chloride intracellular channel 1
mm39_v1_chr14_-_55880708_55880840	0.07187813747969765	Rfx3_Rfx1_Rfx4	ENSMUST00000120041.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000121937.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000133707.2|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000002391.15|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1	ENSMUST00000121791.8|Tm9sf1|ENSMUSG00000002320.16|transmembrane 9 superfamily member 1
mm39_v1_chr7_+_44506561_44506614	0.07108181057496717	Rfx3_Rfx1_Rfx4	ENSMUST00000107876.8|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase	ENSMUST00000154968.2|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase	ENSMUST00000003044.14|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase
mm39_v1_chr7_+_138793150_138793219	0.07091331494186415	Rfx3_Rfx1_Rfx4	ENSMUST00000106104.8|Lrrc27|ENSMUSG00000015980.15|leucine rich repeat containing 27
mm39_v1_chr12_-_55867881_55867903	0.07084216625623631	Rfx3_Rfx1_Rfx4	ENSMUST00000219432.2|Ralgapa1|ENSMUSG00000021027.18|Ral GTPase activating protein, alpha subunit 1
mm39_v1_chr6_-_89572629_89572640	0.07063696838295673	Rfx3_Rfx1_Rfx4	ENSMUST00000113550.6|Chchd6|ENSMUSG00000030086.17|coiled-coil-helix-coiled-coil-helix domain containing 6	ENSMUST00000032172.14|Chchd6|ENSMUSG00000030086.17|coiled-coil-helix-coiled-coil-helix domain containing 6
mm39_v1_chr11_-_105835238_105835345	0.07062139158907722	Rfx3_Rfx1_Rfx4	ENSMUST00000019734.11|Cyb561|ENSMUSG00000019590.17|cytochrome b-561	ENSMUST00000184269.3|Cyb561|ENSMUSG00000019590.17|cytochrome b-561	ENSMUST00000150563.3|Cyb561|ENSMUSG00000019590.17|cytochrome b-561
mm39_v1_chr5_-_114961521_114961536	0.0706161112315578	Rfx3_Rfx1_Rfx4	ENSMUST00000140374.2|1500011B03Rik|ENSMUSG00000072694.9|RIKEN cDNA 1500011B03 gene
mm39_v1_chr8_-_86281946_86282003	0.0699782760368513	Rfx3_Rfx1_Rfx4	ENSMUST00000034138.7|Dnaja2|ENSMUSG00000031701.7|DnaJ heat shock protein family (Hsp40) member A2
mm39_v1_chrX_-_135641869_135641904	0.06966438086716648	Rfx3_Rfx1_Rfx4	ENSMUST00000166930.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2	ENSMUST00000113095.8|Morf4l2|ENSMUSG00000031422.17|mortality factor 4 like 2
mm39_v1_chr8_+_95393228_95393304	0.06956887605400364	Rfx3_Rfx1_Rfx4	ENSMUST00000034228.16|Arl2bp|ENSMUSG00000031776.18|ADP-ribosylation factor-like 2 binding protein
mm39_v1_chr6_+_83133441_83133501	0.06937868840786143	Rfx3_Rfx1_Rfx4	ENSMUST00000203203.2|1700003E16Rik|ENSMUSG00000030030.6|RIKEN cDNA 1700003E16 gene
mm39_v1_chr14_+_55332241_55332241	0.06925953998150684	Rfx3_Rfx1_Rfx4	ENSMUST00000050575.9|Thtpa|ENSMUSG00000045691.15|thiamine triphosphatase
mm39_v1_chr8_-_86026385_86026431	0.0689250650112276	Rfx3_Rfx1_Rfx4	ENSMUST00000034131.10|Vps35|ENSMUSG00000031696.10|VPS35 retromer complex component
mm39_v1_chr7_+_116103599_116103632	0.068653770776206	Rfx3_Rfx1_Rfx4	ENSMUST00000032895.15|Nucb2|ENSMUSG00000030659.15|nucleobindin 2
mm39_v1_chr11_+_76297969_76298029	0.0683510632119263	Rfx3_Rfx1_Rfx4	ENSMUST00000021203.7|Timm22|ENSMUSG00000020843.16|translocase of inner mitochondrial membrane 22	ENSMUST00000152183.2|Timm22|ENSMUSG00000020843.16|translocase of inner mitochondrial membrane 22
mm39_v1_chr17_-_47063095_47063157	0.06797270381104543	Rfx3_Rfx1_Rfx4	ENSMUST00000121671.2|Cnpy3|ENSMUSG00000023973.14|canopy FGF signaling regulator 3	ENSMUST00000059844.13|Cnpy3|ENSMUSG00000023973.14|canopy FGF signaling regulator 3
mm39_v1_chr2_-_121101822_121101888	0.06795971187946358	Rfx3_Rfx1_Rfx4	ENSMUST00000110647.8|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1	ENSMUST00000110648.8|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1
mm39_v1_chr3_-_116301684_116301719	0.06786445882664002	Rfx3_Rfx1_Rfx4	ENSMUST00000153005.2|Rtca|ENSMUSG00000000339.15|RNA 3'-terminal phosphate cyclase
mm39_v1_chr13_+_22129246_22129316	0.06781464394950866	Rfx3_Rfx1_Rfx4	ENSMUST00000176511.8|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)	ENSMUST00000102978.8|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)	ENSMUST00000152258.9|Zfp184|ENSMUSG00000006720.17|zinc finger protein 184 (Kruppel-like)
mm39_v1_chr5_+_24791719_24791792	0.06723367934317985	Rfx3_Rfx1_Rfx4	ENSMUST00000088295.9|Chpf2|ENSMUSG00000038181.17|chondroitin polymerizing factor 2	ENSMUST00000121863.5|Chpf2|ENSMUSG00000038181.17|chondroitin polymerizing factor 2
mm39_v1_chr12_+_84455813_84455876	0.06720596186694161	Rfx3_Rfx1_Rfx4	ENSMUST00000081828.13|Bbof1|ENSMUSG00000057265.14|basal body orientation factor 1
mm39_v1_chr12_+_111505253_111505308	0.06648428629199638	Rfx3_Rfx1_Rfx4	ENSMUST00000220803.2|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5
mm39_v1_chr17_+_25115461_25115524	0.06619859827637557	Rfx3_Rfx1_Rfx4	ENSMUST00000024978.7|Nme3|ENSMUSG00000073435.11|NME/NM23 nucleoside diphosphate kinase 3
mm39_v1_chr11_+_101443014_101443060	0.0660574276574766	Rfx3_Rfx1_Rfx4	ENSMUST00000147239.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor
mm39_v1_chr2_+_29780073_29780096	0.06576838380777414	Rfx3_Rfx1_Rfx4	ENSMUST00000028128.13|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr8_-_71834543_71834621	0.06562855702310373	Rfx3_Rfx1_Rfx4	ENSMUST00000002466.9|Nr2f6|ENSMUSG00000002393.15|nuclear receptor subfamily 2, group F, member 6
mm39_v1_chr10_-_89568106_89568187	0.06556075987662369	Rfx3_Rfx1_Rfx4	ENSMUST00000020109.5|Actr6|ENSMUSG00000019948.5|ARP6 actin-related protein 6
mm39_v1_chr5_+_130108211_130108257	0.06524225634546374	Rfx3_Rfx1_Rfx4	ENSMUST00000040721.9|Tpst1|ENSMUSG00000034118.16|protein-tyrosine sulfotransferase 1
mm39_v1_chr15_-_83006957_83007002	0.0650979077481194	Rfx3_Rfx1_Rfx4	ENSMUST00000018184.10|Rrp7a|ENSMUSG00000018040.10|ribosomal RNA processing 7 homolog A
mm39_v1_chrX_+_152142571_152142609	0.06469782850727987	Rfx3_Rfx1_Rfx4	ENSMUST00000039545.5|Klf8|ENSMUSG00000041649.14|Kruppel-like factor 8
mm39_v1_chr9_-_72892617_72892684	0.06456890802483363	Rfx3_Rfx1_Rfx4	ENSMUST00000124565.3|Ccpg1os|ENSMUSG00000086158.3|cell cycle progression 1, opposite strand
mm39_v1_chr13_+_21295653_21295723	0.06445761995530097	Rfx3_Rfx1_Rfx4	ENSMUST00000213326.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215941.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000215207.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1	ENSMUST00000213922.2|Olfr1369-ps1|ENSMUSG00000060404.4|olfactory receptor 1369, pseudogene 1
mm39_v1_chr7_-_125090757_125090768	0.06443450428927003	Rfx3_Rfx1_Rfx4	ENSMUST00000033006.14|Nsmce1|ENSMUSG00000030750.14|NSE1 homolog, SMC5-SMC6 complex component
mm39_v1_chr11_+_70057449_70057557	0.06431919270585428	Rfx3_Rfx1_Rfx4	ENSMUST00000102571.10|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A	ENSMUST00000178945.8|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A	ENSMUST00000000327.13|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A	ENSMUST00000178567.3|Clec10a|ENSMUSG00000000318.17|C-type lectin domain family 10, member A
mm39_v1_chr2_-_75808508_75808550	0.06415045569033957	Rfx3_Rfx1_Rfx4	ENSMUST00000099995.5|Ttc30a2|ENSMUSG00000075272.5|tetratricopeptide repeat domain 30A2
mm39_v1_chr3_+_89986831_89986847	0.06403946142592579	Rfx3_Rfx1_Rfx4	ENSMUST00000029549.16|Tpm3|ENSMUSG00000027940.19|tropomyosin 3, gamma
mm39_v1_chrX_-_50294652_50294716	0.06375741959404042	Rfx3_Rfx1_Rfx4	ENSMUST00000114875.8|Mbnl3|ENSMUSG00000036109.18|muscleblind like splicing factor 3
mm39_v1_chr15_+_88703786_88703891	0.06372986428487291	Rfx3_Rfx1_Rfx4	ENSMUST00000024042.5|Creld2|ENSMUSG00000023272.5|cysteine-rich with EGF-like domains 2
mm39_v1_chr18_+_53378734_53378745	0.06307777124998717	Rfx3_Rfx1_Rfx4	ENSMUST00000165032.9|Snx24|ENSMUSG00000024535.17|sorting nexing 24
mm39_v1_chr5_-_122510292_122510453	0.062626736920819	Rfx3_Rfx1_Rfx4	ENSMUST00000031419.6|Fam216a|ENSMUSG00000029463.6|family with sequence similarity 216, member A
mm39_v1_chr8_+_37460705_37460766	0.062187280507914534	Rfx3_Rfx1_Rfx4	ENSMUST00000098825.5|AI429214|ENSMUSG00000074384.5|expressed sequence AI429214
mm39_v1_chr19_+_10554845_10554856	0.062081820802371755	Rfx3_Rfx1_Rfx4	ENSMUST00000237581.2|Cyb561a3|ENSMUSG00000034445.9|cytochrome b561 family, member A3
mm39_v1_chr2_-_121101794_121101805	0.06130356877785216	Rfx3_Rfx1_Rfx4	ENSMUST00000131245.2|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1
mm39_v1_chr2_-_27974889_27974903	0.06123572771572972	Rfx3_Rfx1_Rfx4	ENSMUST00000028179.15|Fcnb|ENSMUSG00000026835.16|ficolin B	ENSMUST00000117486.8|Fcnb|ENSMUSG00000026835.16|ficolin B	ENSMUST00000135472.2|Fcnb|ENSMUSG00000026835.16|ficolin B
mm39_v1_chr9_+_108566513_108566552	0.06068920032620164	Rfx3_Rfx1_Rfx4	ENSMUST00000192344.2|Prkar2a|ENSMUSG00000032601.14|protein kinase, cAMP dependent regulatory, type II alpha
mm39_v1_chrX_-_133501677_133501754	0.060460895550181935	Rfx3_Rfx1_Rfx4	ENSMUST00000239113.2|Gla|ENSMUSG00000031266.8|galactosidase, alpha
mm39_v1_chr9_+_43978290_43978319	0.060441760037671426	Rfx3_Rfx1_Rfx4	ENSMUST00000034508.14|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr2_+_118756973_118757035	0.06013539658037622	Rfx3_Rfx1_Rfx4	ENSMUST00000099546.6|Chst14|ENSMUSG00000074916.6|carbohydrate sulfotransferase 14	ENSMUST00000110837.2|Chst14|ENSMUSG00000074916.6|carbohydrate sulfotransferase 14
mm39_v1_chr7_+_6175532_6175571	0.059315065091895956	Rfx3_Rfx1_Rfx4	ENSMUST00000207329.2|Zfp444|ENSMUSG00000044876.16|zinc finger protein 444
mm39_v1_chr2_+_72128239_72128257	0.059116233364935024	Rfx3_Rfx1_Rfx4	ENSMUST00000144111.2|Map3k20|ENSMUSG00000004085.15|mitogen-activated protein kinase kinase kinase 20
mm39_v1_chrX_-_135893776_135893838	0.0589633189117549	Rfx3_Rfx1_Rfx4	ENSMUST00000171738.2|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53	ENSMUST00000056674.6|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53	ENSMUST00000129807.2|Slc25a53|ENSMUSG00000044348.15|solute carrier family 25, member 53
mm39_v1_chr13_+_91609169_91609262	0.058827981431068536	Rfx3_Rfx1_Rfx4	ENSMUST00000004094.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2	ENSMUST00000042122.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2
mm39_v1_chr10_-_79710399_79710417	0.05861600609052615	Rfx3_Rfx1_Rfx4	ENSMUST00000167250.8|Plppr3|ENSMUSG00000035835.15|phospholipid phosphatase related 3
mm39_v1_chr4_+_154059619_154059705	0.058611259768943415	Rfx3_Rfx1_Rfx4	ENSMUST00000047497.15|Cep104|ENSMUSG00000039523.17|centrosomal protein 104
mm39_v1_chr12_+_110855664_110855746	0.05831105909991038	Rfx3_Rfx1_Rfx4	ENSMUST00000165978.3|Tecpr2|ENSMUSG00000021275.17|tectonin beta-propeller repeat containing 2	ENSMUST00000169597.9|Tecpr2|ENSMUSG00000021275.17|tectonin beta-propeller repeat containing 2
mm39_v1_chr3_+_89986925_89987022	0.05768933360348926	Rfx3_Rfx1_Rfx4	ENSMUST00000118566.8|Tpm3|ENSMUSG00000027940.19|tropomyosin 3, gamma	ENSMUST00000119158.8|Tpm3|ENSMUSG00000027940.19|tropomyosin 3, gamma
mm39_v1_chr2_+_119119218_119119252	0.05733957504908607	Rfx3_Rfx1_Rfx4	ENSMUST00000037280.5|Vps18|ENSMUSG00000034216.13|VPS18 CORVET/HOPS core subunit
mm39_v1_chr12_-_118162652_118162778	0.05727894515001158	Rfx3_Rfx1_Rfx4	ENSMUST00000084806.7|Dnah11|ENSMUSG00000018581.16|dynein, axonemal, heavy chain 11
mm39_v1_chr3_-_84489783_84489841	0.056917657227326154	Rfx3_Rfx1_Rfx4	ENSMUST00000107687.9|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1	ENSMUST00000098990.10|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1
mm39_v1_chr11_-_97242842_97242842	0.05652083404003306	Rfx3_Rfx1_Rfx4	ENSMUST00000093942.5|Gpr179|ENSMUSG00000070337.5|G protein-coupled receptor 179
mm39_v1_chr7_+_126550009_126550138	0.05585972662861379	Rfx3_Rfx1_Rfx4	ENSMUST00000106332.3|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr10_+_20828446_20828476	0.055668828109432994	Rfx3_Rfx1_Rfx4	ENSMUST00000105525.12|Ahi1|ENSMUSG00000019986.18|Abelson helper integration site 1
mm39_v1_chr15_+_58761057_58761080	0.0556376484677435	Rfx3_Rfx1_Rfx4	ENSMUST00000036904.7|Rnf139|ENSMUSG00000037075.8|ring finger protein 139
mm39_v1_chr10_-_39009844_39009908	0.05548234147208555	Rfx3_Rfx1_Rfx4	ENSMUST00000134279.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000139743.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000149949.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000124941.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000125042.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000063204.9|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr2_-_109111064_109111112	0.0554415466717433	Rfx3_Rfx1_Rfx4	ENSMUST00000147770.2|Mettl15|ENSMUSG00000057234.10|methyltransferase like 15
mm39_v1_chr8_+_34222266_34222367	0.05541156692796227	Rfx3_Rfx1_Rfx4	ENSMUST00000190675.2|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)	ENSMUST00000171010.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr8_+_34222058_34222167	0.05505846489934402	Rfx3_Rfx1_Rfx4	ENSMUST00000167264.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)	ENSMUST00000187392.7|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr14_-_31362909_31362928	0.054849742085039066	Rfx3_Rfx1_Rfx4	ENSMUST00000022437.16|Hacl1|ENSMUSG00000021884.19|2-hydroxyacyl-CoA lyase 1
mm39_v1_chr10_-_56104732_56104791	0.05475558990207207	Rfx3_Rfx1_Rfx4	ENSMUST00000099739.5|Tbc1d32|ENSMUSG00000038122.10|TBC1 domain family, member 32
mm39_v1_chr11_+_48691175_48691201	0.05459493692110192	Rfx3_Rfx1_Rfx4	ENSMUST00000020640.8|Rack1|ENSMUSG00000020372.16|receptor for activated C kinase 1
mm39_v1_chr11_+_101315893_101315940	0.05439645771662095	Rfx3_Rfx1_Rfx4	ENSMUST00000040561.6|Rundc1|ENSMUSG00000035007.6|RUN domain containing 1
mm39_v1_chr17_+_88837540_88837570	0.05425816347367052	Rfx3_Rfx1_Rfx4	ENSMUST00000038551.8|Ppp1r21|ENSMUSG00000034709.9|protein phosphatase 1, regulatory subunit 21
mm39_v1_chr5_-_115439016_115439058	0.05425514129013554	Rfx3_Rfx1_Rfx4	ENSMUST00000009157.4|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr14_-_121976273_121976372	0.054104703741404456	Rfx3_Rfx1_Rfx4	ENSMUST00000212376.3|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9	ENSMUST00000239077.2|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr11_+_87744033_87744075	0.053670251914493323	Rfx3_Rfx1_Rfx4	ENSMUST00000038196.7|Mks1|ENSMUSG00000034121.13|MKS transition zone complex subunit 1
mm39_v1_chr17_-_31496301_31496326	0.053655727336842284	Rfx3_Rfx1_Rfx4	ENSMUST00000235144.2|Rsph1|ENSMUSG00000024033.11|radial spoke head 1 homolog (Chlamydomonas)
mm39_v1_chr19_-_10554417_10554459	0.05353329884775094	Rfx3_Rfx1_Rfx4	ENSMUST00000236099.2|Tmem138|ENSMUSG00000024666.7|transmembrane protein 138
mm39_v1_chr19_-_10554726_10554778	0.052992299609234975	Rfx3_Rfx1_Rfx4	ENSMUST00000025568.3|Tmem138|ENSMUSG00000024666.7|transmembrane protein 138
mm39_v1_chr11_-_101316156_101316205	0.05291926255498656	Rfx3_Rfx1_Rfx4	ENSMUST00000103102.10|Ptges3l|ENSMUSG00000097487.8|prostaglandin E synthase 3 like
mm39_v1_chr7_-_44024429_44024459	0.05270359465464498	Rfx3_Rfx1_Rfx4	ENSMUST00000107933.8|1700008O03Rik|ENSMUSG00000008028.16|RIKEN cDNA 1700008O03 gene
mm39_v1_chr2_-_13549460_13549488	0.05213928467578964	Rfx3_Rfx1_Rfx4	ENSMUST00000124488.7|Trdmt1|ENSMUSG00000026723.11|tRNA aspartic acid methyltransferase 1
mm39_v1_chr12_+_110816738_110816760	0.05160267173609564	Rfx3_Rfx1_Rfx4	ENSMUST00000222460.2|Zfp839|ENSMUSG00000021271.6|zinc finger protein 839
mm39_v1_chr9_+_108385247_108385292	0.05146658980787532	Rfx3_Rfx1_Rfx4	ENSMUST00000207810.2|Qars|ENSMUSG00000032604.17|glutaminyl-tRNA synthetase	ENSMUST00000207862.2|Qars|ENSMUSG00000032604.17|glutaminyl-tRNA synthetase	ENSMUST00000208581.2|Qars|ENSMUSG00000032604.17|glutaminyl-tRNA synthetase	ENSMUST00000134939.9|Qars|ENSMUSG00000032604.17|glutaminyl-tRNA synthetase	ENSMUST00000207713.2|Qars|ENSMUSG00000032604.17|glutaminyl-tRNA synthetase
mm39_v1_chr19_-_4889284_4889306	0.05146124715599264	Rfx3_Rfx1_Rfx4	ENSMUST00000236451.2|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase	ENSMUST00000236178.2|Ccs|ENSMUSG00000034108.7|copper chaperone for superoxide dismutase
mm39_v1_chr2_+_152804405_152804430	0.0513112178181575	Rfx3_Rfx1_Rfx4	ENSMUST00000099197.9|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9	ENSMUST00000103155.10|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9
mm39_v1_chr8_+_124958099_124958188	0.05111571597234985	Rfx3_Rfx1_Rfx4	ENSMUST00000034458.9|Galnt2|ENSMUSG00000089704.10|polypeptide N-acetylgalactosaminyltransferase 2
mm39_v1_chr5_+_123887759_123887798	0.0509078944538267	Rfx3_Rfx1_Rfx4	ENSMUST00000031366.12|Kntc1|ENSMUSG00000029414.12|kinetochore associated 1
mm39_v1_chr14_+_31363004_31363039	0.05074565487227569	Rfx3_Rfx1_Rfx4	ENSMUST00000090147.7|Btd|ENSMUSG00000021900.11|biotinidase
mm39_v1_chr11_+_101358990_101359001	0.0506748587118823	Rfx3_Rfx1_Rfx4	ENSMUST00000001347.7|Rnd2|ENSMUSG00000001313.13|Rho family GTPase 2
mm39_v1_chr6_+_149043011_149043124	0.050566874280171654	Rfx3_Rfx1_Rfx4	ENSMUST00000179873.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000047531.16|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111548.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111547.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000134306.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000147934.4|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chrX_+_35592006_35592071	0.05035983106428663	Rfx3_Rfx1_Rfx4	ENSMUST00000016383.10|Lonrf3|ENSMUSG00000016239.12|LON peptidase N-terminal domain and ring finger 3
mm39_v1_chr7_+_44397837_44397984	0.0501727716900045	Rfx3_Rfx1_Rfx4	ENSMUST00000002275.15|Vrk3|ENSMUSG00000002205.17|vaccinia related kinase 3
mm39_v1_chr17_-_56381966_56382034	0.04967449574536968	Rfx3_Rfx1_Rfx4	ENSMUST00000019722.12|Ubxn6|ENSMUSG00000019578.12|UBX domain protein 6
mm39_v1_chr14_+_61022006_61022124	0.04943439016720144	Rfx3_Rfx1_Rfx4	ENSMUST00000063562.9|Mipep|ENSMUSG00000021993.11|mitochondrial intermediate peptidase	ENSMUST00000225043.2|Mipep|ENSMUSG00000021993.11|mitochondrial intermediate peptidase
mm39_v1_chr6_+_68013772_68013802	0.04941729993066605	Rfx3_Rfx1_Rfx4	ENSMUST00000197515.2|Igkv17-121|ENSMUSG00000076514.4|immunoglobulin kappa variable 17-121	ENSMUST00000103315.3|Igkv17-121|ENSMUSG00000076514.4|immunoglobulin kappa variable 17-121
mm39_v1_chr19_-_10554462_10554497	0.04938504326477923	Rfx3_Rfx1_Rfx4	ENSMUST00000236185.2|Tmem138|ENSMUSG00000024666.7|transmembrane protein 138
mm39_v1_chr4_+_10874537_10874607	0.049290084284576076	Rfx3_Rfx1_Rfx4	ENSMUST00000101504.3|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr7_-_79392763_79392839	0.04926496359605692	Rfx3_Rfx1_Rfx4	ENSMUST00000032761.8|Pex11a|ENSMUSG00000030545.10|peroxisomal biogenesis factor 11 alpha
mm39_v1_chr6_-_100648086_100648140	0.04881931733008869	Rfx3_Rfx1_Rfx4	ENSMUST00000089245.7|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)	ENSMUST00000113312.9|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)	ENSMUST00000170667.8|Shq1|ENSMUSG00000035378.18|SHQ1 homolog (S. cerevisiae)
mm39_v1_chr6_-_128401832_128401897	0.04871976503598783	Rfx3_Rfx1_Rfx4	ENSMUST00000203374.3|Itfg2|ENSMUSG00000001518.13|integrin alpha FG-GAP repeat containing 2	ENSMUST00000142615.4|Itfg2|ENSMUSG00000001518.13|integrin alpha FG-GAP repeat containing 2	ENSMUST00000001559.11|Itfg2|ENSMUSG00000001518.13|integrin alpha FG-GAP repeat containing 2
mm39_v1_chr9_+_47441471_47441671	0.04859943941997488	Rfx3_Rfx1_Rfx4	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr4_-_62326853_62326896	0.04843408424248863	Rfx3_Rfx1_Rfx4	ENSMUST00000107459.2|Cdc26|ENSMUSG00000066149.12|cell division cycle 26	ENSMUST00000084525.12|Cdc26|ENSMUSG00000066149.12|cell division cycle 26
mm39_v1_chr8_-_35432783_35432869	0.04811489950034555	Rfx3_Rfx1_Rfx4	ENSMUST00000033929.6|Tnks|ENSMUSG00000031529.6|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm39_v1_chr8_+_95710977_95710999	0.048008410910640585	Rfx3_Rfx1_Rfx4	ENSMUST00000093271.8|Adgrg1|ENSMUSG00000031785.17|adhesion G protein-coupled receptor G1
mm39_v1_chr1_-_133681419_133681595	0.047910466490247716	Rfx3_Rfx1_Rfx4	ENSMUST00000125659.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4	ENSMUST00000048953.14|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4	ENSMUST00000165602.9|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr16_-_31918485_31918570	0.047613326866006125	Rfx3_Rfx1_Rfx4	ENSMUST00000189013.8|Pigx|ENSMUSG00000023791.19|phosphatidylinositol glycan anchor biosynthesis, class X	ENSMUST00000155966.8|Pigx|ENSMUSG00000023791.19|phosphatidylinositol glycan anchor biosynthesis, class X	ENSMUST00000096109.11|Pigx|ENSMUSG00000023791.19|phosphatidylinositol glycan anchor biosynthesis, class X	ENSMUST00000232321.2|Pigx|ENSMUSG00000023791.19|phosphatidylinositol glycan anchor biosynthesis, class X
mm39_v1_chr9_-_14682300_14682340	0.04760766592318066	Rfx3_Rfx1_Rfx4	ENSMUST00000191047.7|1700012B09Rik|ENSMUSG00000031927.10|RIKEN cDNA 1700012B09 gene	ENSMUST00000060330.5|1700012B09Rik|ENSMUSG00000031927.10|RIKEN cDNA 1700012B09 gene
mm39_v1_chr4_-_129494378_129494392	0.047567222318880234	Rfx3_Rfx1_Rfx4	ENSMUST00000135055.8|Eif3i|ENSMUSG00000028798.17|eukaryotic translation initiation factor 3, subunit I
mm39_v1_chr9_+_99457829_99457882	0.04713992150994295	Rfx3_Rfx1_Rfx4	ENSMUST00000066650.12|Dbr1|ENSMUSG00000032469.13|debranching RNA lariats 1	ENSMUST00000148987.8|Dbr1|ENSMUSG00000032469.13|debranching RNA lariats 1
mm39_v1_chr9_+_50528608_50528661	0.04696136490589583	Rfx3_Rfx1_Rfx4	ENSMUST00000000171.15|Pih1d2|ENSMUSG00000000167.15|PIH1 domain containing 2	ENSMUST00000151197.8|Pih1d2|ENSMUSG00000000167.15|PIH1 domain containing 2
mm39_v1_chr13_+_59733163_59733255	0.04690384171687217	Rfx3_Rfx1_Rfx4	ENSMUST00000166923.9|Naa35|ENSMUSG00000021555.16|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm39_v1_chr19_+_6326755_6326823	0.046534704451726625	Rfx3_Rfx1_Rfx4	ENSMUST00000025684.4|Ehd1|ENSMUSG00000024772.10|EH-domain containing 1
mm39_v1_chr19_+_5091365_5091444	0.04632593214862519	Rfx3_Rfx1_Rfx4	ENSMUST00000116567.4|Brms1|ENSMUSG00000080268.5|breast cancer metastasis-suppressor 1	ENSMUST00000235918.2|Brms1|ENSMUSG00000080268.5|breast cancer metastasis-suppressor 1
mm39_v1_chr7_+_126086516_126086562	0.04609266407339516	Rfx3_Rfx1_Rfx4	ENSMUST00000098048.6|Tufm|ENSMUSG00000073838.11|Tu translation elongation factor, mitochondrial	ENSMUST00000106392.10|Tufm|ENSMUSG00000073838.11|Tu translation elongation factor, mitochondrial
mm39_v1_chr8_+_34221861_34221976	0.046032763349582874	Rfx3_Rfx1_Rfx4	ENSMUST00000170705.8|Gtf2e2|ENSMUSG00000031585.14|general transcription factor II E, polypeptide 2 (beta subunit)
mm39_v1_chr17_+_34823236_34823279	0.04594280005600683	Rfx3_Rfx1_Rfx4	ENSMUST00000174041.8|Agpat1|ENSMUSG00000034254.18|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm39_v1_chr4_+_152423075_152423166	0.04583572895455329	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.12|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5	ENSMUST00000164662.8|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5
mm39_v1_chr3_-_36667519_36667558	0.045831737491959214	Rfx3_Rfx1_Rfx4	ENSMUST00000040148.11|Bbs7|ENSMUSG00000037325.11|Bardet-Biedl syndrome 7 (human)	ENSMUST00000142333.2|Bbs7|ENSMUSG00000037325.11|Bardet-Biedl syndrome 7 (human)
mm39_v1_chr7_-_44578834_44578942	0.045809820503097176	Rfx3_Rfx1_Rfx4	ENSMUST00000107857.11|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000167930.8|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000085399.13|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit	ENSMUST00000166972.9|Ap2a1|ENSMUSG00000060279.15|adaptor-related protein complex 2, alpha 1 subunit
mm39_v1_chr16_-_3725515_3725582	0.045766426478826894	Rfx3_Rfx1_Rfx4	ENSMUST00000177221.2|1700037C18Rik|ENSMUSG00000005983.16|RIKEN cDNA 1700037C18 gene	ENSMUST00000177323.8|1700037C18Rik|ENSMUSG00000005983.16|RIKEN cDNA 1700037C18 gene
mm39_v1_chr12_-_69245191_69245203	0.04574027314604747	Rfx3_Rfx1_Rfx4	ENSMUST00000021356.6|Dnaaf2|ENSMUSG00000020973.8|dynein, axonemal assembly factor 2
mm39_v1_chr11_-_4799345_4799536	0.045737948915902465	Rfx3_Rfx1_Rfx4	ENSMUST00000053079.13|Nf2|ENSMUSG00000009073.17|neurofibromin 2	ENSMUST00000109910.9|Nf2|ENSMUSG00000009073.17|neurofibromin 2
mm39_v1_chr7_+_44506731_44506778	0.04547440726388467	Rfx3_Rfx1_Rfx4	ENSMUST00000098478.7|Pnkp|ENSMUSG00000002963.18|polynucleotide kinase 3'- phosphatase
mm39_v1_chr13_-_38819012_38819096	0.045427481403928736	Rfx3_Rfx1_Rfx4	ENSMUST00000224902.2|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted	ENSMUST00000224115.2|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted	ENSMUST00000035899.8|Bloc1s5|ENSMUSG00000038982.11|biogenesis of lysosomal organelles complex-1, subunit 5, muted
mm39_v1_chr3_-_89121637_89121679	0.045315413704150924	Rfx3_Rfx1_Rfx4	ENSMUST00000239452.2|Mtx1|ENSMUSG00000064068.16|metaxin 1	ENSMUST00000118964.10|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr15_+_76580925_76580945	0.04517386927275397	Rfx3_Rfx1_Rfx4	ENSMUST00000023203.6|Gpt|ENSMUSG00000022546.6|glutamic pyruvic transaminase, soluble
mm39_v1_chr6_+_83133381_83133434	0.045114745471947264	Rfx3_Rfx1_Rfx4	ENSMUST00000032106.6|1700003E16Rik|ENSMUSG00000030030.6|RIKEN cDNA 1700003E16 gene
mm39_v1_chr2_+_29780122_29780168	0.04502851146875629	Rfx3_Rfx1_Rfx4	ENSMUST00000113762.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113765.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr5_+_135754568_135754594	0.044894282068395644	Rfx3_Rfx1_Rfx4	ENSMUST00000127096.2|Por|ENSMUSG00000005514.15|P450 (cytochrome) oxidoreductase
mm39_v1_chr11_+_119119925_119119961	0.04452571373421867	Rfx3_Rfx1_Rfx4	ENSMUST00000053440.8|Ccdc40|ENSMUSG00000039963.21|coiled-coil domain containing 40
mm39_v1_chr1_+_164135230_164135307	0.044412603830082206	Rfx3_Rfx1_Rfx4	ENSMUST00000193683.6|Nme7|ENSMUSG00000026575.16|NME/NM23 family member 7
mm39_v1_chr3_-_108469468_108469495	0.04435405553780023	Rfx3_Rfx1_Rfx4	ENSMUST00000106622.3|Tmem167b|ENSMUSG00000068732.6|transmembrane protein 167B
mm39_v1_chrX_+_133501928_133502035	0.04395708394945713	Rfx3_Rfx1_Rfx4	ENSMUST00000074950.11|Hnrnph2|ENSMUSG00000045427.14|heterogeneous nuclear ribonucleoprotein H2	ENSMUST00000113203.2|Hnrnph2|ENSMUSG00000045427.14|heterogeneous nuclear ribonucleoprotein H2	ENSMUST00000113202.8|Hnrnph2|ENSMUSG00000045427.14|heterogeneous nuclear ribonucleoprotein H2	ENSMUST00000050331.13|Hnrnph2|ENSMUSG00000045427.14|heterogeneous nuclear ribonucleoprotein H2	ENSMUST00000059297.6|Hnrnph2|ENSMUSG00000045427.14|heterogeneous nuclear ribonucleoprotein H2
mm39_v1_chr15_-_98661076_98661101	0.04395308193550601	Rfx3_Rfx1_Rfx4	ENSMUST00000053183.12|Arf3|ENSMUSG00000051853.11|ADP-ribosylation factor 3
mm39_v1_chr9_+_107440484_107440569	0.04368850195803712	Rfx3_Rfx1_Rfx4	ENSMUST00000193418.2|Tusc2|ENSMUSG00000010054.5|tumor suppressor 2, mitochondrial calcium regulator
mm39_v1_chr19_+_5100815_5100887	0.04364999364831315	Rfx3_Rfx1_Rfx4	ENSMUST00000224178.2|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1	ENSMUST00000225799.3|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1	ENSMUST00000025818.8|Rin1|ENSMUSG00000024883.9|Ras and Rab interactor 1
mm39_v1_chrX_-_56371953_56372042	0.043631021329726655	Rfx3_Rfx1_Rfx4	ENSMUST00000176986.8|Arhgef6|ENSMUSG00000031133.13|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm39_v1_chr3_-_36667434_36667517	0.04342513183165778	Rfx3_Rfx1_Rfx4	ENSMUST00000108155.8|Bbs7|ENSMUSG00000037325.11|Bardet-Biedl syndrome 7 (human)
mm39_v1_chr16_+_44215136_44215193	0.043304548742822975	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.9|Cfap44|ENSMUSG00000071550.15|cilia and flagella associated protein 44
mm39_v1_chr11_-_29197222_29197409	0.04313457878981966	Rfx3_Rfx1_Rfx4	ENSMUST00000020754.10|Cfap36|ENSMUSG00000020462.15|cilia and flagella associated protein 36
mm39_v1_chr19_-_60215097_60215138	0.04305460113349179	Rfx3_Rfx1_Rfx4	ENSMUST00000238054.2|Fam204a|ENSMUSG00000057858.9|family with sequence similarity 204, member A	ENSMUST00000065286.2|Fam204a|ENSMUSG00000057858.9|family with sequence similarity 204, member A
mm39_v1_chr12_-_17061545_17061563	0.04300277624284117	Rfx3_Rfx1_Rfx4	ENSMUST00000190691.2|2410004P03Rik|ENSMUSG00000071398.9|RIKEN cDNA 2410004P03 gene
mm39_v1_chr11_+_102139671_102139715	0.04236036990909969	Rfx3_Rfx1_Rfx4	ENSMUST00000100392.5|Hrob|ENSMUSG00000034773.17|homologous recombination factor with OB-fold
mm39_v1_chr19_-_4175837_4175863	0.04150808581575378	Rfx3_Rfx1_Rfx4	ENSMUST00000121402.2|Aip|ENSMUSG00000024847.16|aryl-hydrocarbon receptor-interacting protein	ENSMUST00000117831.8|Aip|ENSMUSG00000024847.16|aryl-hydrocarbon receptor-interacting protein
mm39_v1_chr11_+_61395964_61396037	0.041435563731482626	Rfx3_Rfx1_Rfx4	ENSMUST00000102657.10|B9d1|ENSMUSG00000001039.13|B9 protein domain 1
mm39_v1_chr15_+_78798116_78798127	0.04120845580008852	Rfx3_Rfx1_Rfx4	ENSMUST00000089378.5|Pdxp|ENSMUSG00000116165.2|pyridoxal (pyridoxine, vitamin B6) phosphatase
mm39_v1_chr7_+_4743114_4743205	0.040925612399036214	Rfx3_Rfx1_Rfx4	ENSMUST00000098853.9|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C	ENSMUST00000130215.8|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C	ENSMUST00000108582.10|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C	ENSMUST00000108583.9|Kmt5c|ENSMUSG00000059851.16|lysine methyltransferase 5C
mm39_v1_chr2_+_84880776_84880847	0.04085140289075637	Rfx3_Rfx1_Rfx4	ENSMUST00000111605.9|Tnks1bp1|ENSMUSG00000033955.14|tankyrase 1 binding protein 1
mm39_v1_chr3_-_36667610_36667626	0.040570228455586464	Rfx3_Rfx1_Rfx4	ENSMUST00000108156.9|Bbs7|ENSMUSG00000037325.11|Bardet-Biedl syndrome 7 (human)
mm39_v1_chr2_-_106800736_106800752	0.040469624218206414	Rfx3_Rfx1_Rfx4	ENSMUST00000093883.4|Arl14ep|ENSMUSG00000027122.16|ADP-ribosylation factor-like 14 effector protein
mm39_v1_chr9_-_107158058_107158114	0.040443195054985046	Rfx3_Rfx1_Rfx4	ENSMUST00000134682.3|Mapkapk3|ENSMUSG00000032577.17|mitogen-activated protein kinase-activated protein kinase 3
mm39_v1_chr7_-_121580930_121580942	0.04035579399911233	Rfx3_Rfx1_Rfx4	ENSMUST00000205438.2|Cog7|ENSMUSG00000034951.11|component of oligomeric golgi complex 7	ENSMUST00000057576.8|Cog7|ENSMUSG00000034951.11|component of oligomeric golgi complex 7
mm39_v1_chr9_+_107440445_107440479	0.03974479612810929	Rfx3_Rfx1_Rfx4	ENSMUST00000010198.5|Tusc2|ENSMUSG00000010054.5|tumor suppressor 2, mitochondrial calcium regulator
mm39_v1_chr16_+_35590745_35590766	0.03943471683030819	Rfx3_Rfx1_Rfx4	ENSMUST00000231579.2|Hspbap1|ENSMUSG00000022849.6|Hspb associated protein 1
mm39_v1_chr18_-_77134939_77134976	0.03829374998079606	Rfx3_Rfx1_Rfx4	ENSMUST00000137354.8|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000137498.8|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2
mm39_v1_chr7_-_44397473_44397473	0.03817233759267222	Rfx3_Rfx1_Rfx4	ENSMUST00000120074.8|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473
mm39_v1_chr17_+_34174797_34174900	0.03797531415953643	Rfx3_Rfx1_Rfx4	ENSMUST00000173196.3|Vps52|ENSMUSG00000024319.19|VPS52 GARP complex subunit
mm39_v1_chr4_-_129494435_129494446	0.03759440920762177	Rfx3_Rfx1_Rfx4	ENSMUST00000102593.11|Eif3i|ENSMUSG00000028798.17|eukaryotic translation initiation factor 3, subunit I
mm39_v1_chr12_+_65012564_65012714	0.03755829041517199	Rfx3_Rfx1_Rfx4	ENSMUST00000066296.9|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1	ENSMUST00000223166.2|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1
mm39_v1_chr1_+_84817547_84817604	0.03724825532807363	Rfx3_Rfx1_Rfx4	ENSMUST00000097672.4|Fbxo36|ENSMUSG00000073633.10|F-box protein 36
mm39_v1_chr4_-_41723129_41723179	0.036499226727285936	Rfx3_Rfx1_Rfx4	ENSMUST00000171641.2|Dctn3|ENSMUSG00000028447.12|dynactin 3	ENSMUST00000030158.11|Dctn3|ENSMUSG00000028447.12|dynactin 3
mm39_v1_chr9_+_105272507_105272614	0.0364712869020243	Rfx3_Rfx1_Rfx4	ENSMUST00000035181.10|Aste1|ENSMUSG00000032567.17|asteroid homolog 1	ENSMUST00000123807.8|Aste1|ENSMUSG00000032567.17|asteroid homolog 1
mm39_v1_chr5_+_24791796_24791823	0.03635707022957838	Rfx3_Rfx1_Rfx4	ENSMUST00000197318.2|Chpf2|ENSMUSG00000038181.17|chondroitin polymerizing factor 2
mm39_v1_chr1_+_179936757_179936830	0.03611499465003458	Rfx3_Rfx1_Rfx4	ENSMUST00000143176.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000135056.8|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr7_-_121666486_121666486	0.035785642153124415	Rfx3_Rfx1_Rfx4	ENSMUST00000033159.4|Ears2|ENSMUSG00000030871.12|glutamyl-tRNA synthetase 2, mitochondrial
mm39_v1_chrX_-_84820209_84820248	0.03575747342148391	Rfx3_Rfx1_Rfx4	ENSMUST00000142152.2|Gk|ENSMUSG00000025059.17|glycerol kinase	ENSMUST00000156390.8|Gk|ENSMUSG00000025059.17|glycerol kinase
mm39_v1_chr14_-_99337137_99337221	0.03560247628815066	Rfx3_Rfx1_Rfx4	ENSMUST00000042471.11|Dis3|ENSMUSG00000033166.12|DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease
mm39_v1_chr18_+_56840813_56841028	0.03550505444876315	Rfx3_Rfx1_Rfx4	ENSMUST00000025486.9|Lmnb1|ENSMUSG00000024590.9|lamin B1
mm39_v1_chr18_+_53378806_53378857	0.034988033622213206	Rfx3_Rfx1_Rfx4	ENSMUST00000025417.9|Snx24|ENSMUSG00000024535.17|sorting nexing 24
mm39_v1_chr17_+_9207180_9207227	0.034713103850616836	Rfx3_Rfx1_Rfx4	ENSMUST00000151609.2|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene	ENSMUST00000232775.2|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene	ENSMUST00000136954.3|1700010I14Rik|ENSMUSG00000023873.14|RIKEN cDNA 1700010I14 gene
mm39_v1_chrX_-_156351979_156351987	0.03464168945229613	Rfx3_Rfx1_Rfx4	ENSMUST00000065806.5|Yy2|ENSMUSG00000091736.4|Yy2 transcription factor
mm39_v1_chr4_-_11076159_11076211	0.034515777352243336	Rfx3_Rfx1_Rfx4	ENSMUST00000058183.9|Ndufaf6|ENSMUSG00000050323.15|NADH:ubiquinone oxidoreductase complex assembly factor 6
mm39_v1_chr4_-_118477960_118477988	0.03401067141638054	Rfx3_Rfx1_Rfx4	ENSMUST00000071972.11|Cfap57|ENSMUSG00000028730.15|cilia and flagella associated protein 57
mm39_v1_chr2_+_109111083_109111141	0.0334631733094677	Rfx3_Rfx1_Rfx4	ENSMUST00000028527.8|Kif18a|ENSMUSG00000027115.15|kinesin family member 18A
mm39_v1_chr16_+_78098344_78098384	0.03331828295828222	Rfx3_Rfx1_Rfx4	ENSMUST00000232148.2|Cxadr|ENSMUSG00000022865.15|coxsackie virus and adenovirus receptor	ENSMUST00000023572.15|Cxadr|ENSMUSG00000022865.15|coxsackie virus and adenovirus receptor
mm39_v1_chr1_-_10302895_10302895	0.03311023339408101	Rfx3_Rfx1_Rfx4	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr12_+_29578354_29578468	0.03305777876426895	Rfx3_Rfx1_Rfx4	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr11_-_120823657_120823703	0.03296968262441456	Rfx3_Rfx1_Rfx4	ENSMUST00000056781.5|Ccdc57|ENSMUSG00000048445.7|coiled-coil domain containing 57
mm39_v1_chr7_+_66872321_66872383	0.032890389708263225	Rfx3_Rfx1_Rfx4	ENSMUST00000207757.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000058771.13|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000207823.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000208698.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000208998.2|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4	ENSMUST00000179106.3|Lysmd4|ENSMUSG00000043831.13|LysM, putative peptidoglycan-binding, domain containing 4
mm39_v1_chr6_+_125072944_125072999	0.032548519488437504	Rfx3_Rfx1_Rfx4	ENSMUST00000112392.8|Chd4|ENSMUSG00000063870.13|chromodomain helicase DNA binding protein 4	ENSMUST00000056889.15|Chd4|ENSMUSG00000063870.13|chromodomain helicase DNA binding protein 4
mm39_v1_chr1_-_36484328_36484352	0.032172908102492	Rfx3_Rfx1_Rfx4	ENSMUST00000125304.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like	ENSMUST00000115011.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like
mm39_v1_chr4_+_124696394_124696471	0.031071441897714082	Rfx3_Rfx1_Rfx4	ENSMUST00000175875.2|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr11_+_78136569_78136646	0.030901013381741987	Rfx3_Rfx1_Rfx4	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr2_-_75812311_75812311	0.0302158435335865	Rfx3_Rfx1_Rfx4	ENSMUST00000099994.5|Ttc30a1|ENSMUSG00000075271.5|tetratricopeptide repeat domain 30A1
mm39_v1_chr13_+_113124336_113124374	0.030115458989532173	Rfx3_Rfx1_Rfx4	ENSMUST00000038404.6|Ccno|ENSMUSG00000042417.6|cyclin O
mm39_v1_chr8_+_95781722_95781754	0.030078310479359088	Rfx3_Rfx1_Rfx4	ENSMUST00000058479.7|Drc7|ENSMUSG00000031786.8|dynein regulatory complex subunit 7
mm39_v1_chr7_-_92286287_92286355	0.029967212298678565	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.14|Ankrd42|ENSMUSG00000041343.20|ankyrin repeat domain 42	ENSMUST00000138267.2|Ankrd42|ENSMUSG00000041343.20|ankyrin repeat domain 42	ENSMUST00000118157.8|Ankrd42|ENSMUSG00000041343.20|ankyrin repeat domain 42
mm39_v1_chr15_-_75550581_75550661	0.029883459126930786	Rfx3_Rfx1_Rfx4	ENSMUST00000000958.9|Top1mt|ENSMUSG00000000934.10|DNA topoisomerase 1, mitochondrial
mm39_v1_chr11_+_69920542_69920663	0.02986739189805798	Rfx3_Rfx1_Rfx4	ENSMUST00000232266.2|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4	ENSMUST00000132597.5|Dlg4|ENSMUSG00000020886.18|discs large MAGUK scaffold protein 4
mm39_v1_chr2_-_26270612_26270666	0.029821134915466906	Rfx3_Rfx1_Rfx4	ENSMUST00000114115.9|Snapc4|ENSMUSG00000036281.14|small nuclear RNA activating complex, polypeptide 4	ENSMUST00000035427.11|Snapc4|ENSMUSG00000036281.14|small nuclear RNA activating complex, polypeptide 4
mm39_v1_chrX_+_71962157_71962219	0.029325553759120063	Rfx3_Rfx1_Rfx4	ENSMUST00000033715.5|Nsdhl|ENSMUSG00000031349.5|NAD(P) dependent steroid dehydrogenase-like
mm39_v1_chr5_-_115791032_115791051	0.029279239883253476	Rfx3_Rfx1_Rfx4	ENSMUST00000121746.8|Bicdl1|ENSMUSG00000041609.17|BICD family like cargo adaptor 1	ENSMUST00000118576.8|Bicdl1|ENSMUSG00000041609.17|BICD family like cargo adaptor 1
mm39_v1_chr12_+_111505216_111505239	0.029184502775918338	Rfx3_Rfx1_Rfx4	ENSMUST00000050993.11|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5
mm39_v1_chr4_-_133273243_133273320	0.028848825812240093	Rfx3_Rfx1_Rfx4	ENSMUST00000030665.7|Nudc|ENSMUSG00000028851.7|nudC nuclear distribution protein
mm39_v1_chr9_+_119274009_119274048	0.028843270944237095	Rfx3_Rfx1_Rfx4	ENSMUST00000035094.14|Exog|ENSMUSG00000042787.16|endo/exonuclease (5'-3'), endonuclease G-like
mm39_v1_chr9_-_27066685_27066723	0.028680602609602993	Rfx3_Rfx1_Rfx4	ENSMUST00000034472.16|Jam3|ENSMUSG00000031990.16|junction adhesion molecule 3
mm39_v1_chr7_-_68398989_68398998	0.028238485281699473	Rfx3_Rfx1_Rfx4	ENSMUST00000048068.15|Arrdc4|ENSMUSG00000042659.16|arrestin domain containing 4
mm39_v1_chr9_+_111014254_111014265	0.028229216612274354	Rfx3_Rfx1_Rfx4	ENSMUST00000198986.2|Lrrfip2|ENSMUSG00000032497.20|leucine rich repeat (in FLII) interacting protein 2
mm39_v1_chr6_-_91450486_91450534	0.028217692467642275	Rfx3_Rfx1_Rfx4	ENSMUST00000040835.9|Chchd4|ENSMUSG00000034203.9|coiled-coil-helix-coiled-coil-helix domain containing 4
mm39_v1_chr11_+_108477903_108477936	0.028111334934608725	Rfx3_Rfx1_Rfx4	ENSMUST00000146912.9|Cep112|ENSMUSG00000020728.18|centrosomal protein 112
mm39_v1_chr8_-_22615046_22615088	0.027889395757763884	Rfx3_Rfx1_Rfx4	ENSMUST00000209656.2|Nek5|ENSMUSG00000037738.12|NIMA (never in mitosis gene a)-related expressed kinase 5	ENSMUST00000169834.2|Nek5|ENSMUSG00000037738.12|NIMA (never in mitosis gene a)-related expressed kinase 5
mm39_v1_chr13_+_108295257_108295288	0.02778902404151258	Rfx3_Rfx1_Rfx4	ENSMUST00000120672.8|Ercc8|ENSMUSG00000021694.19|excision repaiross-complementing rodent repair deficiency, complementation group 8	ENSMUST00000054835.15|Ercc8|ENSMUSG00000021694.19|excision repaiross-complementing rodent repair deficiency, complementation group 8
mm39_v1_chr11_-_101315345_101315622	0.027685381143114616	Rfx3_Rfx1_Rfx4	ENSMUST00000107257.8|Gm27029|ENSMUSG00000097239.8|predicted gene, 27029	ENSMUST00000107252.9|Ptges3l|ENSMUSG00000097487.8|prostaglandin E synthase 3 like	ENSMUST00000093933.11|Ptges3l|ENSMUSG00000097487.8|prostaglandin E synthase 3 like	ENSMUST00000107259.4|Gm27029|ENSMUSG00000097239.8|predicted gene, 27029
mm39_v1_chr3_-_88417251_88417299	0.02744456274541751	Rfx3_Rfx1_Rfx4	ENSMUST00000149068.2|Lmna|ENSMUSG00000028063.16|lamin A
mm39_v1_chr17_-_24869241_24869301	0.02741429298653188	Rfx3_Rfx1_Rfx4	ENSMUST00000234557.2|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	ENSMUST00000002572.6|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm39_v1_chr13_-_53531391_53531433	0.02733038823085166	Rfx3_Rfx1_Rfx4	ENSMUST00000021920.8|Sptlc1|ENSMUSG00000021468.9|serine palmitoyltransferase, long chain base subunit 1
mm39_v1_chr3_-_20089433_20089479	0.02709160908431317	Rfx3_Rfx1_Rfx4	ENSMUST00000108321.2|Hps3|ENSMUSG00000027615.15|HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	ENSMUST00000012580.13|Hps3|ENSMUSG00000027615.15|HPS3, biogenesis of lysosomal organelles complex 2 subunit 1
mm39_v1_chr7_+_24310738_24310775	0.02672176073534077	Rfx3_Rfx1_Rfx4	ENSMUST00000073325.6|Phldb3|ENSMUSG00000074277.5|pleckstrin homology like domain, family B, member 3
mm39_v1_chr17_-_35191127_35191132	0.026402968191764017	Rfx3_Rfx1_Rfx4	ENSMUST00000087328.4|Hspa1a|ENSMUSG00000091971.4|heat shock protein 1A
mm39_v1_chrX_-_84820250_84820264	0.02580526503419525	Rfx3_Rfx1_Rfx4	ENSMUST00000113978.9|Gk|ENSMUSG00000025059.17|glycerol kinase
mm39_v1_chr9_-_61854036_61854047	0.025711126257792073	Rfx3_Rfx1_Rfx4	ENSMUST00000214295.2|Kif23|ENSMUSG00000032254.11|kinesin family member 23
mm39_v1_chr7_-_126522014_126522098	0.025325946315503976	Rfx3_Rfx1_Rfx4	ENSMUST00000134134.3|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219	ENSMUST00000119781.8|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219	ENSMUST00000121612.4|Tmem219|ENSMUSG00000060538.15|transmembrane protein 219
mm39_v1_chr7_-_44398041_44398041	0.025319530689476566	Rfx3_Rfx1_Rfx4	ENSMUST00000060270.13|Zfp473|ENSMUSG00000048012.20|zinc finger protein 473
mm39_v1_chr8_+_46080840_46080866	0.025067597071232024	Rfx3_Rfx1_Rfx4	ENSMUST00000135336.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr6_-_88495835_88495887	0.024846602151261516	Rfx3_Rfx1_Rfx4	ENSMUST00000032168.7|Sec61a1|ENSMUSG00000030082.15|Sec61 alpha 1 subunit (S. cerevisiae)
mm39_v1_chr4_+_133829891_133829896	0.024689415915474047	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.11|Ubxn11|ENSMUSG00000012126.17|UBX domain protein 11
mm39_v1_chr17_+_27904155_27904213	0.024654661751935664	Rfx3_Rfx1_Rfx4	ENSMUST00000231669.2|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1	ENSMUST00000097360.3|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1	ENSMUST00000231236.2|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1
mm39_v1_chr1_+_152626273_152626315	0.024562844636375102	Rfx3_Rfx1_Rfx4	ENSMUST00000068875.5|Apobec4|ENSMUSG00000055547.5|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)
mm39_v1_chr5_-_24235646_24235705	0.02447059899426795	Rfx3_Rfx1_Rfx4	ENSMUST00000197617.5|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A	ENSMUST00000030849.13|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A
mm39_v1_chr16_+_17437205_17437253	0.02425728611945823	Rfx3_Rfx1_Rfx4	ENSMUST00000006053.13|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000231311.2|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000163476.10|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000231257.2|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000165363.10|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000232043.2|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000090159.13|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4	ENSMUST00000232442.2|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4
mm39_v1_chr4_+_99717671_99717737	0.023946562319907556	Rfx3_Rfx1_Rfx4	ENSMUST00000239518.1|Efcab7|ENSMUSG00000073791.14|EF-hand calcium binding domain 7	ENSMUST00000239520.1|Efcab7|ENSMUSG00000073791.14|EF-hand calcium binding domain 7	ENSMUST00000136874.4|Efcab7|ENSMUSG00000073791.14|EF-hand calcium binding domain 7
mm39_v1_chr16_-_90607251_90607318	0.023921886344005105	Rfx3_Rfx1_Rfx4	ENSMUST00000140920.2|Urb1|ENSMUSG00000039929.15|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm39_v1_chr6_+_119456629_119456768	0.023305757663725845	Rfx3_Rfx1_Rfx4	ENSMUST00000032094.7|Fbxl14|ENSMUSG00000030019.7|F-box and leucine-rich repeat protein 14
mm39_v1_chr2_+_26899935_26900094	0.02328375282768869	Rfx3_Rfx1_Rfx4	ENSMUST00000114005.9|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000114004.8|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000114006.8|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000114007.8|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1	ENSMUST00000133807.2|Cacfd1|ENSMUSG00000015488.15|calcium channel flower domain containing 1
mm39_v1_chr9_-_59393893_59393919	0.022935965385567077	Rfx3_Rfx1_Rfx4	ENSMUST00000171975.8|Arih1|ENSMUSG00000025234.12|ariadne RBR E3 ubiquitin protein ligase 1
mm39_v1_chr4_+_152423344_152423429	0.022873076517083236	Rfx3_Rfx1_Rfx4	ENSMUST00000005175.5|Chd5|ENSMUSG00000005045.17|chromodomain helicase DNA binding protein 5
mm39_v1_chr14_-_70585874_70585889	0.022784116423329163	Rfx3_Rfx1_Rfx4	ENSMUST00000152067.8|Slc39a14|ENSMUSG00000022094.16|solute carrier family 39 (zinc transporter), member 14
mm39_v1_chr9_+_43978369_43978432	0.022712982727958127	Rfx3_Rfx1_Rfx4	ENSMUST00000177054.8|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr17_+_88748139_88748217	0.02251963136419037	Rfx3_Rfx1_Rfx4	ENSMUST00000112238.9|Foxn2|ENSMUSG00000034998.19|forkhead box N2	ENSMUST00000155640.2|Foxn2|ENSMUSG00000034998.19|forkhead box N2
mm39_v1_chr18_-_77134980_77135009	0.022493951428283143	Rfx3_Rfx1_Rfx4	ENSMUST00000154665.2|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000026486.13|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000123650.2|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2	ENSMUST00000126153.8|Katnal2|ENSMUSG00000025420.14|katanin p60 subunit A-like 2
mm39_v1_chr12_-_17061504_17061541	0.0221624693965839	Rfx3_Rfx1_Rfx4	ENSMUST00000189479.2|2410004P03Rik|ENSMUSG00000071398.9|RIKEN cDNA 2410004P03 gene
mm39_v1_chr2_-_5068807_5068860	0.022113625270640456	Rfx3_Rfx1_Rfx4	ENSMUST00000114996.8|Optn|ENSMUSG00000026672.12|optineurin
mm39_v1_chr12_-_110662723_110662753	0.02211089135088661	Rfx3_Rfx1_Rfx4	ENSMUST00000021698.13|Hsp90aa1|ENSMUSG00000021270.14|heat shock protein 90, alpha (cytosolic), class A member 1
mm39_v1_chr14_-_49482846_49482931	0.022110034247343674	Rfx3_Rfx1_Rfx4	ENSMUST00000227113.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000130853.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000228936.2|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198	ENSMUST00000022398.15|ccdc198|ENSMUSG00000021850.15|coiled-coil domain containing 198
mm39_v1_chr12_-_110662765_110662852	0.02181845878233472	Rfx3_Rfx1_Rfx4	ENSMUST00000094361.11|Hsp90aa1|ENSMUSG00000021270.14|heat shock protein 90, alpha (cytosolic), class A member 1
mm39_v1_chr8_+_55053809_55053839	0.021810009924336904	Rfx3_Rfx1_Rfx4	ENSMUST00000033917.7|Spata4|ENSMUSG00000031518.7|spermatogenesis associated 4
mm39_v1_chr7_+_116103643_116103665	0.021713445285543222	Rfx3_Rfx1_Rfx4	ENSMUST00000183175.8|Nucb2|ENSMUSG00000030659.15|nucleobindin 2
mm39_v1_chr3_+_29136882_29136920	0.02124551883350438	Rfx3_Rfx1_Rfx4	ENSMUST00000119598.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1	ENSMUST00000118531.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1
mm39_v1_chr19_-_57185861_57185893	0.021038777364282783	Rfx3_Rfx1_Rfx4	ENSMUST00000111550.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr19_+_41017714_41017836	0.02095832402840427	Rfx3_Rfx1_Rfx4	ENSMUST00000051806.12|Dntt|ENSMUSG00000025014.14|deoxynucleotidyltransferase, terminal	ENSMUST00000112200.3|Dntt|ENSMUSG00000025014.14|deoxynucleotidyltransferase, terminal
mm39_v1_chr12_+_116011332_116011398	0.020806798896296382	Rfx3_Rfx1_Rfx4	ENSMUST00000073551.6|Zfp386|ENSMUSG00000042063.12|zinc finger protein 386 (Kruppel-like)	ENSMUST00000183125.2|Zfp386|ENSMUSG00000042063.12|zinc finger protein 386 (Kruppel-like)
mm39_v1_chr8_-_95869114_95869202	0.02005166529875205	Rfx3_Rfx1_Rfx4	ENSMUST00000212554.2|Kifc3|ENSMUSG00000031788.15|kinesin family member C3	ENSMUST00000169748.9|Kifc3|ENSMUSG00000031788.15|kinesin family member C3	ENSMUST00000034240.15|Kifc3|ENSMUSG00000031788.15|kinesin family member C3
mm39_v1_chr17_-_34174631_34174671	0.01975216146465703	Rfx3_Rfx1_Rfx4	ENSMUST00000174609.9|Rps18|ENSMUSG00000008668.16|ribosomal protein S18	ENSMUST00000008812.9|Rps18|ENSMUSG00000008668.16|ribosomal protein S18
mm39_v1_chr10_+_42736644_42736673	0.019547081486390824	Rfx3_Rfx1_Rfx4	ENSMUST00000105495.8|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr5_+_122510508_122510540	0.019543826165136488	Rfx3_Rfx1_Rfx4	ENSMUST00000031420.11|Gpn3|ENSMUSG00000029464.11|GPN-loop GTPase 3
mm39_v1_chr10_-_39009910_39009923	0.019431520129176864	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr7_-_12514534_12514606	0.019082422428321064	Rfx3_Rfx1_Rfx4	ENSMUST00000211392.2|Zscan18|ENSMUSG00000070822.6|zinc finger and SCAN domain containing 18
mm39_v1_chr19_+_6414587_6414699	0.019074536637370874	Rfx3_Rfx1_Rfx4	ENSMUST00000155973.2|Sf1|ENSMUSG00000024949.18|splicing factor 1
mm39_v1_chr3_-_108469740_108469782	0.019008242466689394	Rfx3_Rfx1_Rfx4	ENSMUST00000090546.6|Tmem167b|ENSMUSG00000068732.6|transmembrane protein 167B
mm39_v1_chr8_+_3726503_3726547	0.018991531514733383	Rfx3_Rfx1_Rfx4	ENSMUST00000207787.2|Trappc5|ENSMUSG00000040236.5|trafficking protein particle complex 5
mm39_v1_chr5_+_35074862_35074890	0.018845585946534113	Rfx3_Rfx1_Rfx4	ENSMUST00000202205.2|Msantd1|ENSMUSG00000051246.4|Myb/SANT-like DNA-binding domain containing 1
mm39_v1_chr1_+_66426127_66426159	0.018659406352675285	Rfx3_Rfx1_Rfx4	ENSMUST00000145419.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr11_+_20597149_20597156	0.018547052632201133	Rfx3_Rfx1_Rfx4	ENSMUST00000109585.2|Sertad2|ENSMUSG00000049800.14|SERTA domain containing 2
mm39_v1_chr4_-_155170738_155170836	0.01812911291893523	Rfx3_Rfx1_Rfx4	ENSMUST00000030914.4|Rer1|ENSMUSG00000029048.4|retention in endoplasmic reticulum sorting receptor 1
mm39_v1_chr7_+_3439144_3439225	0.018066245483116788	Rfx3_Rfx1_Rfx4	ENSMUST00000182222.8|Cacng8|ENSMUSG00000053395.16|calcium channel, voltage-dependent, gamma subunit 8
mm39_v1_chr15_-_36794741_36794791	0.018059440493145514	Rfx3_Rfx1_Rfx4	ENSMUST00000110361.8|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000022894.14|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000110359.2|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm39_v1_chr11_-_5828251_5828292	0.017903419678524386	Rfx3_Rfx1_Rfx4	ENSMUST00000102922.10|Pold2|ENSMUSG00000020471.12|polymerase (DNA directed), delta 2, regulatory subunit
mm39_v1_chr15_+_25752963_25753065	0.017788034569897245	Rfx3_Rfx1_Rfx4	ENSMUST00000022882.12|Myo10|ENSMUSG00000022272.18|myosin X	ENSMUST00000135173.8|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr19_+_9979033_9979067	0.017735027699615987	Rfx3_Rfx1_Rfx4	ENSMUST00000121418.8|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1
mm39_v1_chr7_+_126549859_126549901	0.017729432443360126	Rfx3_Rfx1_Rfx4	ENSMUST00000106333.8|Sez6l2|ENSMUSG00000030683.12|seizure related 6 homolog like 2
mm39_v1_chr6_+_34757346_34757413	0.017481765460894128	Rfx3_Rfx1_Rfx4	ENSMUST00000115016.8|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3	ENSMUST00000115017.8|Agbl3|ENSMUSG00000038836.16|ATP/GTP binding protein-like 3
mm39_v1_chr7_+_118454957_118455024	0.017225458551268197	Rfx3_Rfx1_Rfx4	ENSMUST00000208658.2|Iqck|ENSMUSG00000073856.12|IQ motif containing K	ENSMUST00000098087.9|Iqck|ENSMUSG00000073856.12|IQ motif containing K	ENSMUST00000106547.2|Iqck|ENSMUSG00000073856.12|IQ motif containing K
mm39_v1_chr5_+_34919078_34919124	0.017222618394146676	Rfx3_Rfx1_Rfx4	ENSMUST00000080036.3|Htt|ENSMUSG00000029104.16|huntingtin
mm39_v1_chr10_-_41366321_41366364	0.016887677217498436	Rfx3_Rfx1_Rfx4	ENSMUST00000019965.13|Smpd2|ENSMUSG00000019822.13|sphingomyelin phosphodiesterase 2, neutral
mm39_v1_chr3_-_89121686_89121737	0.01664213629892249	Rfx3_Rfx1_Rfx4	ENSMUST00000073572.12|Mtx1|ENSMUSG00000064068.16|metaxin 1
mm39_v1_chr2_-_28473150_28473201	0.01634674173829951	Rfx3_Rfx1_Rfx4	ENSMUST00000113889.9|Gtf3c5|ENSMUSG00000026816.15|general transcription factor IIIC, polypeptide 5
mm39_v1_chr10_-_13744523_13744618	0.016219620771495108	Rfx3_Rfx1_Rfx4	ENSMUST00000105534.10|Aig1|ENSMUSG00000019806.14|androgen-induced 1
mm39_v1_chr6_-_136852792_136852821	0.015831971674714812	Rfx3_Rfx1_Rfx4	ENSMUST00000032342.3|Mgp|ENSMUSG00000030218.3|matrix Gla protein
mm39_v1_chr11_-_100510423_100510485	0.01574178930647363	Rfx3_Rfx1_Rfx4	ENSMUST00000137688.9|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239389.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000155152.9|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000154972.9|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239479.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000132886.3|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7
mm39_v1_chr3_+_108498595_108498727	0.01572356358502268	Rfx3_Rfx1_Rfx4	ENSMUST00000051145.15|Wdr47|ENSMUSG00000040389.16|WD repeat domain 47
mm39_v1_chr19_-_57185928_57185969	0.015619530339277246	Rfx3_Rfx1_Rfx4	ENSMUST00000111544.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr2_-_112198366_112198381	0.015469616636415471	Rfx3_Rfx1_Rfx4	ENSMUST00000028551.4|Emc4|ENSMUSG00000027131.4|ER membrane protein complex subunit 4
mm39_v1_chr7_+_45434755_45434814	0.015328324151313355	Rfx3_Rfx1_Rfx4	ENSMUST00000233503.2|Lmtk3|ENSMUSG00000062044.17|lemur tyrosine kinase 3	ENSMUST00000120005.10|Lmtk3|ENSMUSG00000062044.17|lemur tyrosine kinase 3	ENSMUST00000211609.2|Lmtk3|ENSMUSG00000062044.17|lemur tyrosine kinase 3
mm39_v1_chr9_-_7177000_7177063	0.015216266067522162	Rfx3_Rfx1_Rfx4	ENSMUST00000048417.13|Dync2h1|ENSMUSG00000047193.17|dynein cytoplasmic 2 heavy chain 1
mm39_v1_chr5_-_121665249_121665321	0.015122127331273121	Rfx3_Rfx1_Rfx4	ENSMUST00000152270.8|Mapkapk5|ENSMUSG00000029454.16|MAP kinase-activated protein kinase 5
mm39_v1_chr4_+_62327010_62327102	0.015088170244383236	Rfx3_Rfx1_Rfx4	ENSMUST00000084524.4|Prpf4|ENSMUSG00000066148.4|pre-mRNA processing factor 4
mm39_v1_chrX_+_149981074_149981136	0.01493704768530229	Rfx3_Rfx1_Rfx4	ENSMUST00000184730.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000184392.8|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3	ENSMUST00000096285.5|Wnk3|ENSMUSG00000041245.14|WNK lysine deficient protein kinase 3
mm39_v1_chr18_-_61310066_61310129	0.014772538500244627	Rfx3_Rfx1_Rfx4	ENSMUST00000235480.2|Hmgxb3|ENSMUSG00000024622.9|HMG box domain containing 3	ENSMUST00000091884.6|Hmgxb3|ENSMUSG00000024622.9|HMG box domain containing 3
mm39_v1_chr9_-_122779986_122780077	0.014606472483903727	Rfx3_Rfx1_Rfx4	ENSMUST00000118422.2|1110059G10Rik|ENSMUSG00000032551.8|RIKEN cDNA 1110059G10 gene	ENSMUST00000035154.4|1110059G10Rik|ENSMUSG00000032551.8|RIKEN cDNA 1110059G10 gene
mm39_v1_chr13_-_49462694_49462735	0.01452784480921859	Rfx3_Rfx1_Rfx4	ENSMUST00000110087.9|Fgd3|ENSMUSG00000037946.12|FYVE, RhoGEF and PH domain containing 3
mm39_v1_chr12_+_113104085_113104203	0.01442408191099079	Rfx3_Rfx1_Rfx4	ENSMUST00000200380.5|Crip2|ENSMUSG00000006356.11|cysteine rich protein 2
mm39_v1_chr4_-_52911794_52911794	0.014338841346932219	Rfx3_Rfx1_Rfx4	ENSMUST00000051600.3|Olfr272|ENSMUSG00000051593.5|olfactory receptor 272
mm39_v1_chr11_-_70924288_70924339	0.014157914732185207	Rfx3_Rfx1_Rfx4	ENSMUST00000238695.2|6330403K07Rik|ENSMUSG00000018451.8|RIKEN cDNA 6330403K07 gene
mm39_v1_chr6_-_115830249_115830306	0.013901494408698332	Rfx3_Rfx1_Rfx4	ENSMUST00000122816.3|Mbd4|ENSMUSG00000030322.13|methyl-CpG binding domain protein 4
mm39_v1_chr5_+_76736514_76736570	0.013865393983749807	Rfx3_Rfx1_Rfx4	ENSMUST00000121979.8|Cep135|ENSMUSG00000036403.16|centrosomal protein 135
mm39_v1_chr4_-_12171971_12172021	0.01379721504399272	Rfx3_Rfx1_Rfx4	ENSMUST00000087052.11|Cibar1|ENSMUSG00000028218.20|CBY1 interacting BAR domain containing 1	ENSMUST00000108285.9|Cibar1|ENSMUSG00000028218.20|CBY1 interacting BAR domain containing 1	ENSMUST00000177837.8|Cibar1|ENSMUSG00000028218.20|CBY1 interacting BAR domain containing 1
mm39_v1_chr18_-_39652468_39652478	0.013538418126051024	Rfx3_Rfx1_Rfx4	ENSMUST00000237944.2|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr4_+_41465134_41465164	0.013450165075995451	Rfx3_Rfx1_Rfx4	ENSMUST00000030154.7|Nudt2|ENSMUSG00000028443.7|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm39_v1_chr19_-_8906686_8906747	0.013397560499089155	Rfx3_Rfx1_Rfx4	ENSMUST00000096242.5|Rom1|ENSMUSG00000071648.5|rod outer segment membrane protein 1
mm39_v1_chr18_-_43820759_43820838	0.013377895505695328	Rfx3_Rfx1_Rfx4	ENSMUST00000082254.8|Jakmip2|ENSMUSG00000024502.11|janus kinase and microtubule interacting protein 2
mm39_v1_chr10_+_129910278_129910278	0.013359174878341413	Rfx3_Rfx1_Rfx4	ENSMUST00000080460.3|Olfr822|ENSMUSG00000058251.4|olfactory receptor 822
mm39_v1_chr15_-_34443355_34443419	0.013326272378555144	Rfx3_Rfx1_Rfx4	ENSMUST00000009039.6|Rpl30|ENSMUSG00000058600.14|ribosomal protein L30
mm39_v1_chr3_-_116301720_116301857	0.013162478999732592	Rfx3_Rfx1_Rfx4	ENSMUST00000000348.15|Rtca|ENSMUSG00000000339.15|RNA 3'-terminal phosphate cyclase
mm39_v1_chr10_-_129627483_129627483	0.013058227585827694	Rfx3_Rfx1_Rfx4	ENSMUST00000091986.4|Olfr810|ENSMUSG00000069421.5|olfactory receptor 810
mm39_v1_chr9_+_46194293_46194322	0.012942761736356929	Rfx3_Rfx1_Rfx4	ENSMUST00000074957.5|Bud13|ENSMUSG00000032077.6|BUD13 homolog
mm39_v1_chr9_+_108367801_108367963	0.012901381286754617	Rfx3_Rfx1_Rfx4	ENSMUST00000006854.13|Usp19|ENSMUSG00000006676.17|ubiquitin specific peptidase 19
mm39_v1_chr11_-_120930193_120930301	0.012719234901403384	Rfx3_Rfx1_Rfx4	ENSMUST00000026159.6|Cd7|ENSMUSG00000025163.7|CD7 antigen
mm39_v1_chr8_-_96161466_96161497	0.01269198426273014	Rfx3_Rfx1_Rfx4	ENSMUST00000213086.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20	ENSMUST00000034249.8|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr4_-_126647156_126647239	0.01230763232595434	Rfx3_Rfx1_Rfx4	ENSMUST00000030637.14|Ncdn|ENSMUSG00000028833.14|neurochondrin	ENSMUST00000106116.2|Ncdn|ENSMUSG00000028833.14|neurochondrin
mm39_v1_chr8_+_110220614_110220659	0.01211539368840349	Rfx3_Rfx1_Rfx4	ENSMUST00000034162.8|Pmfbp1|ENSMUSG00000031727.9|polyamine modulated factor 1 binding protein 1
mm39_v1_chr3_+_68375495_68375542	0.012089673965641458	Rfx3_Rfx1_Rfx4	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr1_+_6800275_6800341	0.0119988554653026	Rfx3_Rfx1_Rfx4	ENSMUST00000043578.13|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000139756.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000131467.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000150761.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18	ENSMUST00000151281.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chr18_-_31742946_31742982	0.011765224462195788	Rfx3_Rfx1_Rfx4	ENSMUST00000060396.7|Slc25a46|ENSMUSG00000024259.10|solute carrier family 25, member 46
mm39_v1_chr11_-_76359222_76359313	0.011584717467933039	Rfx3_Rfx1_Rfx4	ENSMUST00000065028.14|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr19_+_3332901_3333073	0.011471370190062504	Rfx3_Rfx1_Rfx4	ENSMUST00000025745.10|Mrpl21|ENSMUSG00000024829.13|mitochondrial ribosomal protein L21	ENSMUST00000025743.7|Mrpl21|ENSMUSG00000024829.13|mitochondrial ribosomal protein L21
mm39_v1_chr6_+_149043136_149043162	0.01137110305700048	Rfx3_Rfx1_Rfx4	ENSMUST00000166416.8|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase	ENSMUST00000111551.2|Etfbkmt|ENSMUSG00000039958.18|electron transfer flavoprotein beta subunit lysine methyltransferase
mm39_v1_chr7_+_24246575_24246669	0.011312033058926826	Rfx3_Rfx1_Rfx4	ENSMUST00000063249.9|Xrcc1|ENSMUSG00000051768.10|X-ray repair complementing defective repair in Chinese hamster cells 1
mm39_v1_chr11_-_4798985_4799194	0.011269705617702588	Rfx3_Rfx1_Rfx4	ENSMUST00000056290.13|Nf2|ENSMUSG00000009073.17|neurofibromin 2	ENSMUST00000172305.2|Nf2|ENSMUSG00000009073.17|neurofibromin 2	ENSMUST00000164190.8|Nf2|ENSMUSG00000009073.17|neurofibromin 2
mm39_v1_chr16_+_17437367_17437381	0.011266153339684356	Rfx3_Rfx1_Rfx4	ENSMUST00000231887.2|Smpd4|ENSMUSG00000005899.15|sphingomyelin phosphodiesterase 4
mm39_v1_chr7_+_143792455_143792467	0.01122886937183749	Rfx3_Rfx1_Rfx4	ENSMUST00000239495.2|Shank2|ENSMUSG00000037541.23|SH3 and multiple ankyrin repeat domains 2
mm39_v1_chr2_-_101459274_101459301	0.01074888599860894	Rfx3_Rfx1_Rfx4	ENSMUST00000099682.9|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein
mm39_v1_chr16_-_16647139_16647215	0.010666808981952037	Rfx3_Rfx1_Rfx4	ENSMUST00000023468.6|Spag6l|ENSMUSG00000022783.12|sperm associated antigen 6-like
mm39_v1_chr11_-_89587671_89587711	0.01035953235865409	Rfx3_Rfx1_Rfx4	ENSMUST00000128717.9|Ankfn1|ENSMUSG00000047773.16|ankyrin-repeat and fibronectin type III domain containing 1
mm39_v1_chr10_-_103072141_103072189	0.010329042191084483	Rfx3_Rfx1_Rfx4	ENSMUST00000123364.2|Lrriq1|ENSMUSG00000019892.14|leucine-rich repeats and IQ motif containing 1	ENSMUST00000166240.8|Lrriq1|ENSMUSG00000019892.14|leucine-rich repeats and IQ motif containing 1	ENSMUST00000020043.12|Lrriq1|ENSMUSG00000019892.14|leucine-rich repeats and IQ motif containing 1
mm39_v1_chr10_+_106306122_106306228	0.010321244767256156	Rfx3_Rfx1_Rfx4	ENSMUST00000029404.17|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	ENSMUST00000217854.2|Ppfia2|ENSMUSG00000053825.16|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm39_v1_chr12_-_46863726_46863743	0.010063176687301783	Rfx3_Rfx1_Rfx4	ENSMUST00000219330.2|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr1_-_4479445_4479513	0.009960130101860464	Rfx3_Rfx1_Rfx4	ENSMUST00000208660.2|Rp1|ENSMUSG00000025900.14|retinitis pigmentosa 1 (human)
mm39_v1_chr8_+_95393404_95393492	0.009953967061925403	Rfx3_Rfx1_Rfx4	ENSMUST00000211858.2|Arl2bp|ENSMUSG00000031776.18|ADP-ribosylation factor-like 2 binding protein
mm39_v1_chr19_-_53378990_53379012	0.009743202159194308	Rfx3_Rfx1_Rfx4	ENSMUST00000025997.7|Smndc1|ENSMUSG00000025024.8|survival motor neuron domain containing 1
mm39_v1_chr15_-_77129706_77129747	0.009602526491749318	Rfx3_Rfx1_Rfx4	ENSMUST00000228361.2|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr11_-_45845992_45846020	0.009485899659395745	Rfx3_Rfx1_Rfx4	ENSMUST00000109254.2|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr17_+_57024759_57024819	0.00913647605716055	Rfx3_Rfx1_Rfx4	ENSMUST00000002452.8|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11	ENSMUST00000233832.2|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11	ENSMUST00000233233.2|Ndufa11|ENSMUSG00000002379.8|NADH:ubiquinone oxidoreductase subunit A11
mm39_v1_chr3_+_98289755_98289836	0.008932259194940109	Rfx3_Rfx1_Rfx4	ENSMUST00000056096.15|Zfp697|ENSMUSG00000050064.15|zinc finger protein 697
mm39_v1_chr17_-_34337446_34337475	0.008912831007955977	Rfx3_Rfx1_Rfx4	ENSMUST00000095347.13|Brd2|ENSMUSG00000024335.21|bromodomain containing 2
mm39_v1_chr15_-_77129786_77129804	0.00890431343500548	Rfx3_Rfx1_Rfx4	ENSMUST00000228558.2|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr19_-_57185808_57185849	0.00883147513340152	Rfx3_Rfx1_Rfx4	ENSMUST00000111546.8|Ablim1|ENSMUSG00000025085.17|actin-binding LIM protein 1
mm39_v1_chr3_+_14011445_14011476	0.008694927095275891	Rfx3_Rfx1_Rfx4	ENSMUST00000192209.6|Ralyl|ENSMUSG00000039717.17|RALY RNA binding protein-like	ENSMUST00000171075.8|Ralyl|ENSMUSG00000039717.17|RALY RNA binding protein-like	ENSMUST00000108372.4|Ralyl|ENSMUSG00000039717.17|RALY RNA binding protein-like
mm39_v1_chr5_-_113369096_113369107	0.008462638248179681	Rfx3_Rfx1_Rfx4	ENSMUST00000211733.2|2900026A02Rik|ENSMUSG00000051339.11|RIKEN cDNA 2900026A02 gene
mm39_v1_chr13_-_120217380_120217445	0.008435182166353063	Rfx3_Rfx1_Rfx4	ENSMUST00000178142.2|Nim1k|ENSMUSG00000095930.2|NIM1 serine/threonine protein kinase
mm39_v1_chr7_+_12712139_12712165	0.008408554909491437	Rfx3_Rfx1_Rfx4	ENSMUST00000108536.3|Zfp446|ENSMUSG00000033961.17|zinc finger protein 446
mm39_v1_chr19_-_41790458_41790499	0.008387561017663681	Rfx3_Rfx1_Rfx4	ENSMUST00000026150.15|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000163265.9|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000177495.2|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19
mm39_v1_chr2_+_119803230_119803384	0.008320321569265262	Rfx3_Rfx1_Rfx4	ENSMUST00000229024.2|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr19_+_4175934_4176000	0.00824435562075071	Rfx3_Rfx1_Rfx4	ENSMUST00000169055.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000135257.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000138593.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000140267.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000137579.6|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000139987.10|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000150627.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000151401.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134	ENSMUST00000153654.11|Tmem134|ENSMUSG00000024845.20|transmembrane protein 134
mm39_v1_chr5_+_123390149_123390203	0.008242441801610207	Rfx3_Rfx1_Rfx4	ENSMUST00000121964.8|Wdr66|ENSMUSG00000029442.19|WD repeat domain 66
mm39_v1_chr13_+_97274445_97274548	0.007678178399974858	Rfx3_Rfx1_Rfx4	ENSMUST00000160139.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000042084.13|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161639.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161913.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161825.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000161929.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2	ENSMUST00000022170.8|Gfm2|ENSMUSG00000021666.17|G elongation factor, mitochondrial 2
mm39_v1_chr5_-_87240405_87240422	0.007671706851943646	Rfx3_Rfx1_Rfx4	ENSMUST00000132667.2|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36	ENSMUST00000145617.8|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36	ENSMUST00000094649.11|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36
mm39_v1_chr9_-_51240201_51240229	0.007663893582437384	Rfx3_Rfx1_Rfx4	ENSMUST00000039959.11|1810046K07Rik|ENSMUSG00000036027.14|RIKEN cDNA 1810046K07 gene	ENSMUST00000238450.3|1810046K07Rik|ENSMUSG00000036027.14|RIKEN cDNA 1810046K07 gene
mm39_v1_chr17_-_36014863_36014887	0.007486137091230149	Rfx3_Rfx1_Rfx4	ENSMUST00000148065.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr9_+_43983493_43983509	0.007411597765763013	Rfx3_Rfx1_Rfx4	ENSMUST00000176671.2|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr6_-_124756645_124756698	0.0072188619750878855	Rfx3_Rfx1_Rfx4	ENSMUST00000147669.2|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000128697.8|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000032218.10|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23	ENSMUST00000112475.9|Lrrc23|ENSMUSG00000030125.12|leucine rich repeat containing 23
mm39_v1_chr5_+_135661472_135661501	0.00714471643243089	Rfx3_Rfx1_Rfx4	ENSMUST00000043707.7|Rhbdd2|ENSMUSG00000039917.11|rhomboid domain containing 2
mm39_v1_chr10_+_58333740_58333792	0.007105016116082403	Rfx3_Rfx1_Rfx4	ENSMUST00000036576.10|Ccdc138|ENSMUSG00000038010.10|coiled-coil domain containing 138
mm39_v1_chr3_-_54962899_54962911	0.007057213156129912	Rfx3_Rfx1_Rfx4	ENSMUST00000199144.5|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr9_+_53316572_53316623	0.0070503983496613635	Rfx3_Rfx1_Rfx4	ENSMUST00000005262.2|4930550C14Rik|ENSMUSG00000005131.5|RIKEN cDNA 4930550C14 gene	ENSMUST00000217318.2|4930550C14Rik|ENSMUSG00000005131.5|RIKEN cDNA 4930550C14 gene
mm39_v1_chr1_+_171594690_171594706	0.007009386458780441	Rfx3_Rfx1_Rfx4	ENSMUST00000015460.5|Slamf1|ENSMUSG00000015316.12|signaling lymphocytic activation molecule family member 1
mm39_v1_chr9_+_107879700_107879879	0.006949315007582694	Rfx3_Rfx1_Rfx4	ENSMUST00000035214.11|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000176854.7|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000175874.2|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1
mm39_v1_chr11_-_115967873_115967894	0.006884030661258053	Rfx3_Rfx1_Rfx4	ENSMUST00000153408.8|Unc13d|ENSMUSG00000057948.13|unc-13 homolog D
mm39_v1_chr3_+_94391644_94391671	0.006878701346892816	Rfx3_Rfx1_Rfx4	ENSMUST00000197677.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr3_-_30701942_30702025	0.006789164630795791	Rfx3_Rfx1_Rfx4	ENSMUST00000029252.8|Lrrc34|ENSMUSG00000027702.8|leucine rich repeat containing 34
mm39_v1_chr2_+_153003212_153003227	0.006774314362928601	Rfx3_Rfx1_Rfx4	ENSMUST00000089027.3|Tm9sf4|ENSMUSG00000068040.11|transmembrane 9 superfamily member 4
mm39_v1_chr8_-_40761372_40761372	0.006770277631072334	Rfx3_Rfx1_Rfx4	ENSMUST00000118639.2|Fgf20|ENSMUSG00000031603.15|fibroblast growth factor 20
mm39_v1_chr12_-_83486669_83486716	0.006578741520751179	Rfx3_Rfx1_Rfx4	ENSMUST00000177801.2|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3
mm39_v1_chr1_-_162913210_162913242	0.006532733026253845	Rfx3_Rfx1_Rfx4	ENSMUST00000096608.5|Mroh9|ENSMUSG00000071890.5|maestro heat-like repeat family member 9
mm39_v1_chr17_+_28361115_28361167	0.006352830142081006	Rfx3_Rfx1_Rfx4	ENSMUST00000043503.11|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr7_+_27207226_27207285	0.006351699969763485	Rfx3_Rfx1_Rfx4	ENSMUST00000125990.2|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000065487.7|Prx|ENSMUSG00000053198.15|periaxin
mm39_v1_chr10_-_128204806_128204882	0.006258292163388428	Rfx3_Rfx1_Rfx4	ENSMUST00000043211.7|Coq10a|ENSMUSG00000039914.7|coenzyme Q10A	ENSMUST00000220227.2|Coq10a|ENSMUSG00000039914.7|coenzyme Q10A
mm39_v1_chr6_-_126898768_126898802	0.006255614055596053	Rfx3_Rfx1_Rfx4	ENSMUST00000078521.7|Dyrk4|ENSMUSG00000030345.17|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4
mm39_v1_chr1_+_21021889_21021959	0.006233839011659633	Rfx3_Rfx1_Rfx4	ENSMUST00000038447.6|Efhc1|ENSMUSG00000041809.6|EF-hand domain (C-terminal) containing 1
mm39_v1_chr13_+_59733073_59733139	0.006225278174614803	Rfx3_Rfx1_Rfx4	ENSMUST00000168367.8|Naa35|ENSMUSG00000021555.16|N(alpha)-acetyltransferase 35, NatC auxiliary subunit	ENSMUST00000022038.15|Naa35|ENSMUSG00000021555.16|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm39_v1_chr7_-_126182347_126182425	0.006203754413777867	Rfx3_Rfx1_Rfx4	ENSMUST00000098036.9|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	ENSMUST00000032962.11|Cln3|ENSMUSG00000030720.17|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm39_v1_chr13_+_55517545_55517589	0.006183826682703383	Rfx3_Rfx1_Rfx4	ENSMUST00000063771.14|Rgs14|ENSMUSG00000052087.15|regulator of G-protein signaling 14
mm39_v1_chr6_-_77956635_77956691	0.006134435528288123	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000160894.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2
mm39_v1_chr12_-_103923145_103923164	0.006119627129629032	Rfx3_Rfx1_Rfx4	ENSMUST00000085054.5|Serpina1e|ENSMUSG00000072849.11|serine (or cysteine) peptidase inhibitor, clade A, member 1E
mm39_v1_chr12_-_104010690_104010707	0.006053863771363086	Rfx3_Rfx1_Rfx4	ENSMUST00000043915.4|Serpina12|ENSMUSG00000041567.4|serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12
mm39_v1_chrX_+_135893894_135893965	0.005884231146240116	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.8|Zcchc18|ENSMUSG00000031428.12|zinc finger, CCHC domain containing 18	ENSMUST00000101227.3|Zcchc18|ENSMUSG00000031428.12|zinc finger, CCHC domain containing 18
mm39_v1_chr8_-_84184978_84184994	0.005838714486022117	Rfx3_Rfx1_Rfx4	ENSMUST00000081506.11|Scoc|ENSMUSG00000063253.12|short coiled-coil protein
mm39_v1_chr7_+_44078366_44078442	0.00570362600662097	Rfx3_Rfx1_Rfx4	ENSMUST00000127790.8|Lrrc4b|ENSMUSG00000047085.15|leucine rich repeat containing 4B
mm39_v1_chr5_-_53370761_53370826	0.00526847674485428	Rfx3_Rfx1_Rfx4	ENSMUST00000031090.8|Sel1l3|ENSMUSG00000029189.11|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm39_v1_chr10_+_41179966_41179976	0.005248726944328764	Rfx3_Rfx1_Rfx4	ENSMUST00000173494.4|Ak9|ENSMUSG00000091415.6|adenylate kinase 9
mm39_v1_chr18_-_78249612_78249655	0.0051238397886197605	Rfx3_Rfx1_Rfx4	ENSMUST00000163367.3|Slc14a2|ENSMUSG00000024552.17|solute carrier family 14 (urea transporter), member 2
mm39_v1_chr19_+_47167554_47167615	0.005098687863747666	Rfx3_Rfx1_Rfx4	ENSMUST00000235290.2|Neurl1a|ENSMUSG00000006435.17|neuralized E3 ubiquitin protein ligase 1A
mm39_v1_chr3_+_29136449_29136449	0.004702717490829936	Rfx3_Rfx1_Rfx4	ENSMUST00000146943.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1
mm39_v1_chr8_-_71308040_71308040	0.004143975341399606	Rfx3_Rfx1_Rfx4	ENSMUST00000212509.3|Kcnn1|ENSMUSG00000002908.18|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
mm39_v1_chr9_+_104446682_104446825	0.00413177824652925	Rfx3_Rfx1_Rfx4	ENSMUST00000057742.15|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chr10_-_128481649_128481708	0.00403155654625061	Rfx3_Rfx1_Rfx4	ENSMUST00000221150.2|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr15_-_33687986_33688030	0.0036374527947269594	Rfx3_Rfx1_Rfx4	ENSMUST00000042021.5|Tspyl5|ENSMUSG00000038984.5|testis-specific protein, Y-encoded-like 5
mm39_v1_chr14_-_73286535_73286563	0.003534194077000302	Rfx3_Rfx1_Rfx4	ENSMUST00000169168.3|Cysltr2|ENSMUSG00000033470.13|cysteinyl leukotriene receptor 2
mm39_v1_chr8_-_121835125_121835145	0.0034950285736601292	Rfx3_Rfx1_Rfx4	ENSMUST00000133037.8|Mthfsd|ENSMUSG00000031816.16|methenyltetrahydrofolate synthetase domain containing
mm39_v1_chr12_+_35097179_35097230	0.0033884926534016114	Rfx3_Rfx1_Rfx4	ENSMUST00000163677.3|Snx13|ENSMUSG00000020590.17|sorting nexin 13	ENSMUST00000048519.17|Snx13|ENSMUSG00000020590.17|sorting nexin 13
mm39_v1_chr10_-_111996226_111996235	0.0033237982382354485	Rfx3_Rfx1_Rfx4	ENSMUST00000220085.2|Glipr1l3|ENSMUSG00000112611.2|GLI pathogenesis-related 1 like 3
mm39_v1_chr17_+_28361237_28361295	0.003305846614918606	Rfx3_Rfx1_Rfx4	ENSMUST00000233905.2|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr9_-_44473146_44473174	0.003300501010981318	Rfx3_Rfx1_Rfx4	ENSMUST00000215293.2|Cxcr5|ENSMUSG00000047880.16|chemokine (C-X-C motif) receptor 5
mm39_v1_chr10_+_42736539_42736625	0.003291917130367657	Rfx3_Rfx1_Rfx4	ENSMUST00000157071.8|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr10_-_82526442_82526484	0.0031518499168131727	Rfx3_Rfx1_Rfx4	ENSMUST00000065815.13|Glt8d2|ENSMUSG00000020251.14|glycosyltransferase 8 domain containing 2	ENSMUST00000020485.10|Glt8d2|ENSMUSG00000020251.14|glycosyltransferase 8 domain containing 2
mm39_v1_chr5_+_38196568_38196643	0.0030703784593403764	Rfx3_Rfx1_Rfx4	ENSMUST00000031008.13|Stx18|ENSMUSG00000029125.15|syntaxin 18	ENSMUST00000042146.15|Stx18|ENSMUSG00000029125.15|syntaxin 18	ENSMUST00000202412.4|Stx18|ENSMUSG00000029125.15|syntaxin 18	ENSMUST00000154929.5|Stx18|ENSMUSG00000029125.15|syntaxin 18
mm39_v1_chr9_-_40915858_40915882	0.003053853431685191	Rfx3_Rfx1_Rfx4	ENSMUST00000188848.8|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule	ENSMUST00000034519.13|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule
mm39_v1_chr9_+_104446957_104446991	0.0030054860690369614	Rfx3_Rfx1_Rfx4	ENSMUST00000077190.7|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chrX_+_6933733_6933774	0.0029890354539431827	Rfx3_Rfx1_Rfx4	ENSMUST00000057101.13|Akap4|ENSMUSG00000050089.14|A kinase (PRKA) anchor protein 4	ENSMUST00000115750.8|Akap4|ENSMUSG00000050089.14|A kinase (PRKA) anchor protein 4
mm39_v1_chr16_+_17464328_17464372	0.0029711529981636267	Rfx3_Rfx1_Rfx4	ENSMUST00000056962.11|Ccdc74a|ENSMUSG00000041617.11|coiled-coil domain containing 74A
mm39_v1_chr10_+_87695117_87695128	0.0029110816480007553	Rfx3_Rfx1_Rfx4	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr3_-_75359125_75359125	0.002907016157039381	Rfx3_Rfx1_Rfx4	ENSMUST00000204341.3|Wdr49|ENSMUSG00000104301.4|WD repeat domain 49
mm39_v1_chr2_-_89193771_89193771	0.002818563393683963	Rfx3_Rfx1_Rfx4	ENSMUST00000099783.2|Olfr1234|ENSMUSG00000075090.5|olfactory receptor 1234
mm39_v1_chr14_-_73286504_73286517	0.002791032457177924	Rfx3_Rfx1_Rfx4	ENSMUST00000044664.12|Cysltr2|ENSMUSG00000033470.13|cysteinyl leukotriene receptor 2
mm39_v1_chr15_+_78926085_78926085	0.0027892308748575637	Rfx3_Rfx1_Rfx4	ENSMUST00000058004.4|Galr3|ENSMUSG00000114755.2|galanin receptor 3
mm39_v1_chr7_-_79382651_79382666	0.0027801551367282163	Rfx3_Rfx1_Rfx4	ENSMUST00000205413.2|Plin1|ENSMUSG00000030546.15|perilipin 1
mm39_v1_chr12_-_103739847_103739869	0.0027625177035105874	Rfx3_Rfx1_Rfx4	ENSMUST00000078869.6|Serpina1d|ENSMUSG00000071177.5|serine (or cysteine) peptidase inhibitor, clade A, member 1D
mm39_v1_chr9_-_72399221_72399494	0.0027242707375332758	Rfx3_Rfx1_Rfx4	ENSMUST00000185151.8|Tex9|ENSMUSG00000090626.10|testis expressed gene 9	ENSMUST00000085358.12|Tex9|ENSMUSG00000090626.10|testis expressed gene 9	ENSMUST00000184125.8|Tex9|ENSMUSG00000090626.10|testis expressed gene 9	ENSMUST00000183574.8|Tex9|ENSMUSG00000090626.10|testis expressed gene 9	ENSMUST00000184831.8|Tex9|ENSMUSG00000090626.10|testis expressed gene 9
mm39_v1_chr15_+_30457772_30457856	0.0026978379435257604	Rfx3_Rfx1_Rfx4	ENSMUST00000228282.2|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr6_+_135339929_135339959	0.0026502957781455337	Rfx3_Rfx1_Rfx4	ENSMUST00000032330.16|Emp1|ENSMUSG00000030208.16|epithelial membrane protein 1
mm39_v1_chr19_-_4333061_4333171	0.0026255331698761064	Rfx3_Rfx1_Rfx4	ENSMUST00000167215.2|Ankrd13d|ENSMUSG00000005986.17|ankyrin repeat domain 13 family, member D	ENSMUST00000056888.13|Ankrd13d|ENSMUSG00000005986.17|ankyrin repeat domain 13 family, member D
mm39_v1_chr13_+_46427176_46427197	0.002610146588407579	Rfx3_Rfx1_Rfx4	ENSMUST00000076622.4|Stmnd1|ENSMUSG00000063529.4|stathmin domain containing 1
mm39_v1_chr7_+_102452687_102452687	0.0025725913178356007	Rfx3_Rfx1_Rfx4	ENSMUST00000061096.7|Olfr564|ENSMUSG00000048469.7|olfactory receptor 564
mm39_v1_chr2_+_32519479_32519527	0.0025359541161880544	Rfx3_Rfx1_Rfx4	ENSMUST00000068271.5|Ak1|ENSMUSG00000026817.15|adenylate kinase 1
mm39_v1_chr6_-_121107953_121107964	0.002514552055054502	Rfx3_Rfx1_Rfx4	ENSMUST00000204248.2|Mical3|ENSMUSG00000051586.18|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm39_v1_chr13_+_42834989_42835062	0.0025072464094956404	Rfx3_Rfx1_Rfx4	ENSMUST00000149235.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr12_+_11315868_11315887	0.0023952880858905848	Rfx3_Rfx1_Rfx4	ENSMUST00000020931.6|Smc6|ENSMUSG00000020608.8|structural maintenance of chromosomes 6
mm39_v1_chr1_-_172156828_172156874	0.0023817002375116393	Rfx3_Rfx1_Rfx4	ENSMUST00000194204.2|Kcnj9|ENSMUSG00000038026.13|potassium inwardly-rectifying channel, subfamily J, member 9
mm39_v1_chr10_-_79973210_79973276	0.002378357537429346	Rfx3_Rfx1_Rfx4	ENSMUST00000170219.9|Cbarp|ENSMUSG00000035640.19|calcium channel, voltage-dependent, beta subunit associated regulatory protein	ENSMUST00000169546.9|Cbarp|ENSMUSG00000035640.19|calcium channel, voltage-dependent, beta subunit associated regulatory protein
mm39_v1_chr2_+_36796923_36796923	0.002281424153530911	Rfx3_Rfx1_Rfx4	ENSMUST00000068475.5|Olfr354|ENSMUSG00000055088.6|olfactory receptor 354
mm39_v1_chr10_+_83558729_83558830	0.0022803313474740027	Rfx3_Rfx1_Rfx4	ENSMUST00000150459.3|1500009L16Rik|ENSMUSG00000087651.4|RIKEN cDNA 1500009L16 gene
mm39_v1_chr14_+_60615690_60615741	0.002227274174673799	Rfx3_Rfx1_Rfx4	ENSMUST00000239079.2|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chrX_+_55939732_55939732	0.0021691966965842113	Rfx3_Rfx1_Rfx4	ENSMUST00000136396.8|Adgrg4|ENSMUSG00000053852.12|adhesion G protein-coupled receptor G4
mm39_v1_chr9_-_40915895_40915929	0.002159816712899704	Rfx3_Rfx1_Rfx4	ENSMUST00000180384.3|Crtam|ENSMUSG00000032021.15|cytotoxic and regulatory T cell molecule
mm39_v1_chrX_+_10118544_10118596	0.002107649843223884	Rfx3_Rfx1_Rfx4	ENSMUST00000049910.13|Otc|ENSMUSG00000031173.14|ornithine transcarbamylase
mm39_v1_chr7_-_109038282_109038291	0.0020823021317761866	Rfx3_Rfx1_Rfx4	ENSMUST00000106745.9|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33	ENSMUST00000090414.11|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33	ENSMUST00000141210.2|Stk33|ENSMUSG00000031027.16|serine/threonine kinase 33
mm39_v1_chr5_+_29400981_29401030	0.0020583524183303624	Rfx3_Rfx1_Rfx4	ENSMUST00000160888.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000159272.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000001247.12|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000161398.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32	ENSMUST00000160246.8|Rnf32|ENSMUSG00000029130.13|ring finger protein 32
mm39_v1_chr14_+_65903878_65903892	0.0019880936123439085	Rfx3_Rfx1_Rfx4	ENSMUST00000069226.7|Scara5|ENSMUSG00000022032.15|scavenger receptor class A, member 5
mm39_v1_chr15_-_58187556_58187575	0.0019688929983813423	Rfx3_Rfx1_Rfx4	ENSMUST00000022985.2|Klhl38|ENSMUSG00000022357.3|kelch-like 38
mm39_v1_chr2_-_87322762_87322762	0.001942953258815363	Rfx3_Rfx1_Rfx4	ENSMUST00000026957.4|Pramel7|ENSMUSG00000025839.4|PRAME like 7
mm39_v1_chr7_-_79382573_79382595	0.001909717237378674	Rfx3_Rfx1_Rfx4	ENSMUST00000205747.2|Plin1|ENSMUSG00000030546.15|perilipin 1
mm39_v1_chr12_-_103829810_103829889	0.0019048162757413947	Rfx3_Rfx1_Rfx4	ENSMUST00000085056.8|Serpina1a|ENSMUSG00000066366.15|serine (or cysteine) peptidase inhibitor, clade A, member 1A	ENSMUST00000072876.12|Serpina1a|ENSMUSG00000066366.15|serine (or cysteine) peptidase inhibitor, clade A, member 1A	ENSMUST00000124717.2|Serpina1a|ENSMUSG00000066366.15|serine (or cysteine) peptidase inhibitor, clade A, member 1A
mm39_v1_chr7_-_46854668_46854723	0.0018321903426812565	Rfx3_Rfx1_Rfx4	ENSMUST00000186456.2|Mrgpra6|ENSMUSG00000052303.7|MAS-related GPR, member A6
mm39_v1_chr5_-_28415166_28415178	0.001760758397420307	Rfx3_Rfx1_Rfx4	ENSMUST00000117098.2|Cnpy1|ENSMUSG00000044681.20|canopy FGF signaling regulator 1
mm39_v1_chr9_+_37450551_37450590	0.0017180796669746534	Rfx3_Rfx1_Rfx4	ENSMUST00000002008.7|Vsig2|ENSMUSG00000001943.9|V-set and immunoglobulin domain containing 2	ENSMUST00000215957.2|Vsig2|ENSMUSG00000001943.9|V-set and immunoglobulin domain containing 2	ENSMUST00000215271.2|Vsig2|ENSMUSG00000001943.9|V-set and immunoglobulin domain containing 2
mm39_v1_chrX_+_10118600_10118622	0.0015979432721646236	Rfx3_Rfx1_Rfx4	ENSMUST00000115528.3|Otc|ENSMUSG00000031173.14|ornithine transcarbamylase
mm39_v1_chr9_-_29323500_29323574	0.001575155218767971	Rfx3_Rfx1_Rfx4	ENSMUST00000115237.8|Ntm|ENSMUSG00000059974.11|neurotrimin
mm39_v1_chr11_-_34158085_34158092	0.0015225791187462123	Rfx3_Rfx1_Rfx4	ENSMUST00000060271.3|Foxi1|ENSMUSG00000047861.3|forkhead box I1
mm39_v1_chr10_-_128204545_128204560	0.0015193942771920088	Rfx3_Rfx1_Rfx4	ENSMUST00000220027.2|Coq10a|ENSMUSG00000039914.7|coenzyme Q10A
mm39_v1_chr14_+_65903840_65903865	0.0015087373987257033	Rfx3_Rfx1_Rfx4	ENSMUST00000022610.15|Scara5|ENSMUSG00000022032.15|scavenger receptor class A, member 5
mm39_v1_chr5_-_49046874_49046899	0.0014556480455579998	Rfx3_Rfx1_Rfx4	ENSMUST00000176978.8|Kcnip4|ENSMUSG00000029088.17|Kv channel interacting protein 4
mm39_v1_chr2_-_87487286_87487286	0.0014475214523673736	Rfx3_Rfx1_Rfx4	ENSMUST00000213939.2|Olfr1134|ENSMUSG00000111747.3|olfactory receptor 1134
mm39_v1_chr4_-_118401185_118401270	0.001445159987148954	Rfx3_Rfx1_Rfx4	ENSMUST00000128098.8|Tmem125|ENSMUSG00000050854.10|transmembrane protein 125
mm39_v1_chr8_-_46747629_46747708	0.0013680269799788538	Rfx3_Rfx1_Rfx4	ENSMUST00000058636.9|Helt|ENSMUSG00000047171.9|helt bHLH transcription factor
mm39_v1_chr7_-_101765915_101765926	0.0012594977182363953	Rfx3_Rfx1_Rfx4	ENSMUST00000084830.2|Chrna10|ENSMUSG00000066279.4|cholinergic receptor, nicotinic, alpha polypeptide 10
mm39_v1_chr14_-_40728839_40728933	0.0012587063823112405	Rfx3_Rfx1_Rfx4	ENSMUST00000152837.2|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A	ENSMUST00000134715.8|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A
mm39_v1_chr4_+_151081538_151081554	0.0012313568265216784	Rfx3_Rfx1_Rfx4	ENSMUST00000030803.2|Uts2|ENSMUSG00000028963.2|urotensin 2
mm39_v1_chr11_-_101490011_101490082	0.0012256849491976871	Rfx3_Rfx1_Rfx4	ENSMUST00000209862.2|Gm11634|ENSMUSG00000085486.3|predicted gene 11634	ENSMUST00000154147.2|Gm11634|ENSMUSG00000085486.3|predicted gene 11634
mm39_v1_chr3_+_122039274_122039371	0.0012098589777671778	Rfx3_Rfx1_Rfx4	ENSMUST00000178826.8|Gclm|ENSMUSG00000028124.16|glutamate-cysteine ligase, modifier subunit
mm39_v1_chr5_+_66417233_66417255	0.0011999388819200023	Rfx3_Rfx1_Rfx4	ENSMUST00000202994.4|Nsun7|ENSMUSG00000029206.14|NOL1/NOP2/Sun domain family, member 7	ENSMUST00000201100.4|Nsun7|ENSMUSG00000029206.14|NOL1/NOP2/Sun domain family, member 7
mm39_v1_chr7_-_104830607_104830607	0.0011810968817437084	Rfx3_Rfx1_Rfx4	ENSMUST00000051355.7|Olfr685|ENSMUSG00000047794.7|olfactory receptor 685
mm39_v1_chr16_+_17464428_17464524	0.0011559763555180826	Rfx3_Rfx1_Rfx4	ENSMUST00000182117.8|Ccdc74a|ENSMUSG00000041617.11|coiled-coil domain containing 74A	ENSMUST00000182671.8|Ccdc74a|ENSMUSG00000041617.11|coiled-coil domain containing 74A	ENSMUST00000182344.8|Ccdc74a|ENSMUSG00000041617.11|coiled-coil domain containing 74A
mm39_v1_chr12_-_103871146_103871161	0.001142204006891692	Rfx3_Rfx1_Rfx4	ENSMUST00000074051.6|Serpina1c|ENSMUSG00000079015.3|serine (or cysteine) peptidase inhibitor, clade A, member 1C
mm39_v1_chr7_-_133966588_133966613	0.0011341565887426203	Rfx3_Rfx1_Rfx4	ENSMUST00000172947.8|D7Ertd443e|ENSMUSG00000030994.17|DNA segment, Chr 7, ERATO Doi 443, expressed
mm39_v1_chr12_-_103704417_103704417	0.001111060522095133	Rfx3_Rfx1_Rfx4	ENSMUST00000095450.11|Serpina1b|ENSMUSG00000071178.12|serine (or cysteine) preptidase inhibitor, clade A, member 1B	ENSMUST00000187220.2|Serpina1b|ENSMUSG00000071178.12|serine (or cysteine) preptidase inhibitor, clade A, member 1B
mm39_v1_chr3_+_29136172_29136172	0.0010839660582235527	Rfx3_Rfx1_Rfx4	ENSMUST00000124809.8|Egfem1|ENSMUSG00000063600.15|EGF-like and EMI domain containing 1
mm39_v1_chrX_-_48877080_48877120	0.0010375899018421752	Rfx3_Rfx1_Rfx4	ENSMUST00000114893.8|Igsf1|ENSMUSG00000031111.17|immunoglobulin superfamily, member 1
mm39_v1_chr5_-_28415020_28415036	0.0010329640785531366	Rfx3_Rfx1_Rfx4	ENSMUST00000118882.2|Cnpy1|ENSMUSG00000044681.20|canopy FGF signaling regulator 1
mm39_v1_chr2_+_163348728_163348780	0.0009933773474942414	Rfx3_Rfx1_Rfx4	ENSMUST00000143911.8|Hnf4a|ENSMUSG00000017950.17|hepatic nuclear factor 4, alpha
mm39_v1_chr13_+_41302272_41302272	0.000946531617397285	Rfx3_Rfx1_Rfx4	ENSMUST00000141292.9|Sycp2l|ENSMUSG00000038651.16|synaptonemal complex protein 2-like
mm39_v1_chr17_-_38393890_38393890	0.000847113179209396	Rfx3_Rfx1_Rfx4	ENSMUST00000059560.5|Olfr131|ENSMUSG00000043312.7|olfactory receptor 131
mm39_v1_chr17_-_53770324_53770368	0.0008365400916650687	Rfx3_Rfx1_Rfx4	ENSMUST00000024725.5|Efhb|ENSMUSG00000023931.6|EF hand domain family, member B
mm39_v1_chr18_-_32082624_32082689	0.0008297641678726247	Rfx3_Rfx1_Rfx4	ENSMUST00000064016.6|Gpr17|ENSMUSG00000052229.6|G protein-coupled receptor 17
mm39_v1_chr1_+_75213258_75213272	0.0008211764285069346	Rfx3_Rfx1_Rfx4	ENSMUST00000185654.3|Dnajb2|ENSMUSG00000026203.17|DnaJ heat shock protein family (Hsp40) member B2
mm39_v1_chr10_-_79481565_79481577	0.0008113692655686432	Rfx3_Rfx1_Rfx4	ENSMUST00000095464.3|Odf3l2|ENSMUSG00000035963.9|outer dense fiber of sperm tails 3-like 2
mm39_v1_chrX_+_55833061_55833085	0.0007881130484890784	Rfx3_Rfx1_Rfx4	ENSMUST00000151033.2|Fhl1|ENSMUSG00000023092.17|four and a half LIM domains 1
mm39_v1_chrX_+_35459621_35459646	0.0007548914310035485	Rfx3_Rfx1_Rfx4	ENSMUST00000115256.2|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr8_+_67943410_67943410	0.0007504886476507001	Rfx3_Rfx1_Rfx4	ENSMUST00000026677.4|Nat1|ENSMUSG00000025588.5|N-acetyl transferase 1
mm39_v1_chr11_-_61344818_61344932	0.0007306452749684733	Rfx3_Rfx1_Rfx4	ENSMUST00000060255.14|Rnf112|ENSMUSG00000010086.18|ring finger protein 112	ENSMUST00000054927.14|Rnf112|ENSMUSG00000010086.18|ring finger protein 112	ENSMUST00000102661.4|Rnf112|ENSMUSG00000010086.18|ring finger protein 112
mm39_v1_chr16_-_23749544_23749544	0.0007251906433567378	Rfx3_Rfx1_Rfx4	ENSMUST00000061030.10|Rtp2|ENSMUSG00000047531.10|receptor transporter protein 2
mm39_v1_chr4_+_129494463_129494508	0.000623802289016394	Rfx3_Rfx1_Rfx4	ENSMUST00000102591.10|Tmem234|ENSMUSG00000028797.21|transmembrane protein 234	ENSMUST00000181579.8|Tmem234|ENSMUSG00000028797.21|transmembrane protein 234	ENSMUST00000173758.8|Tmem234|ENSMUSG00000028797.21|transmembrane protein 234
mm39_v1_chr14_+_30673435_30673469	0.0006123879143008575	Rfx3_Rfx1_Rfx4	ENSMUST00000226833.2|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chr11_-_105834953_105835053	0.0005748794321770637	Rfx3_Rfx1_Rfx4	ENSMUST00000184086.8|Cyb561|ENSMUSG00000019590.17|cytochrome b-561
mm39_v1_chr14_-_57015748_57015824	0.0005604235287539871	Rfx3_Rfx1_Rfx4	ENSMUST00000022507.13|Pspc1|ENSMUSG00000021938.13|paraspeckle protein 1	ENSMUST00000163924.2|Pspc1|ENSMUSG00000021938.13|paraspeckle protein 1
mm39_v1_chrX_+_35459601_35459614	0.0005184225941140372	Rfx3_Rfx1_Rfx4	ENSMUST00000115257.8|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr11_-_69439934_69439934	0.0004696264238214829	Rfx3_Rfx1_Rfx4	ENSMUST00000108659.2|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chr1_-_92830604_92830643	0.0004645107511314766	Rfx3_Rfx1_Rfx4	ENSMUST00000160548.8|Ankmy1|ENSMUSG00000034212.15|ankyrin repeat and MYND domain containing 1	ENSMUST00000112998.2|Ankmy1|ENSMUSG00000034212.15|ankyrin repeat and MYND domain containing 1
mm39_v1_chr14_-_20502285_20502310	0.00044863841797973975	Rfx3_Rfx1_Rfx4	ENSMUST00000056073.14|Cfap70|ENSMUSG00000039543.17|cilia and flagella associated protein 70	ENSMUST00000022349.14|Cfap70|ENSMUSG00000039543.17|cilia and flagella associated protein 70	ENSMUST00000022348.15|Cfap70|ENSMUSG00000039543.17|cilia and flagella associated protein 70
mm39_v1_chr9_+_59496571_59496636	0.0004259529436595721	Rfx3_Rfx1_Rfx4	ENSMUST00000121266.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000118164.3|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr7_-_103092357_103092357	0.000400849148902528	Rfx3_Rfx1_Rfx4	ENSMUST00000080660.6|Olfr605|ENSMUSG00000109659.4|olfactory receptor 605
mm39_v1_chr10_+_116881246_116881268	0.00040066983115406184	Rfx3_Rfx1_Rfx4	ENSMUST00000073834.5|Lrrc10|ENSMUSG00000060187.5|leucine rich repeat containing 10
mm39_v1_chr7_-_106556141_106556141	0.00038234150638329594	Rfx3_Rfx1_Rfx4	ENSMUST00000219365.2|Olfr6|ENSMUSG00000036647.6|olfactory receptor 6
mm39_v1_chr5_+_30868908_30868932	0.0003623235986519108	Rfx3_Rfx1_Rfx4	ENSMUST00000114729.8|Dpysl5|ENSMUSG00000029168.15|dihydropyrimidinase-like 5
mm39_v1_chr1_+_156193607_156193619	0.0003343688823050804	Rfx3_Rfx1_Rfx4	ENSMUST00000102782.4|Gm2000|ENSMUSG00000078193.3|predicted gene 2000
mm39_v1_chr19_-_40371242_40371275	0.00033036383446520464	Rfx3_Rfx1_Rfx4	ENSMUST00000224583.2|Sorbs1|ENSMUSG00000025006.19|sorbin and SH3 domain containing 1
mm39_v1_chr8_+_70285282_70285362	0.0003263724567491761	Rfx3_Rfx1_Rfx4	ENSMUST00000131637.9|Pbx4|ENSMUSG00000031860.18|pre B cell leukemia homeobox 4
mm39_v1_chr11_-_5900019_5900081	0.0003038275084743564	Rfx3_Rfx1_Rfx4	ENSMUST00000102920.4|Gck|ENSMUSG00000041798.16|glucokinase
mm39_v1_chr7_-_127187767_127187767	0.00027694011322653333	Rfx3_Rfx1_Rfx4	ENSMUST00000072155.5|Ccdc189|ENSMUSG00000057176.5|coiled-coil domain containing 189
mm39_v1_chr18_+_36481792_36481832	0.00026612246936037846	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.9|Cystm1|ENSMUSG00000046727.14|cysteine-rich transmembrane module containing 1
mm39_v1_chr19_-_42074777_42074813	0.00026347548050289956	Rfx3_Rfx1_Rfx4	ENSMUST00000051772.10|Morn4|ENSMUSG00000049670.10|MORN repeat containing 4
mm39_v1_chr5_-_24235295_24235317	0.0002275117864147507	Rfx3_Rfx1_Rfx4	ENSMUST00000101513.9|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A
mm39_v1_chrX_+_35459589_35459600	0.000215429426180867	Rfx3_Rfx1_Rfx4	ENSMUST00000048067.10|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chrX_-_132799144_132799178	0.00020322660299546837	Rfx3_Rfx1_Rfx4	ENSMUST00000087557.12|Tspan6|ENSMUSG00000067377.13|tetraspanin 6
mm39_v1_chr18_-_23174698_23174729	0.0001693998702179404	Rfx3_Rfx1_Rfx4	ENSMUST00000097651.10|Nol4|ENSMUSG00000041923.16|nucleolar protein 4
mm39_v1_chr15_+_38219447_38219548	0.00014189412016141667	Rfx3_Rfx1_Rfx4	ENSMUST00000081966.5|Odf1|ENSMUSG00000061923.5|outer dense fiber of sperm tails 1
mm39_v1_chrX_-_36432482_36432509	0.00011917304905641557	Rfx3_Rfx1_Rfx4	ENSMUST00000046557.6|Akap14|ENSMUSG00000036551.7|A kinase (PRKA) anchor protein 14
mm39_v1_chr2_+_153538572_153538572	0.00010566547254341194	Rfx3_Rfx1_Rfx4	ENSMUST00000119996.3|Dnmt3c|ENSMUSG00000082079.3|DNA methyltransferase 3C
mm39_v1_chr19_-_40371016_40371077	7.484144696216632e-05	Rfx3_Rfx1_Rfx4	ENSMUST00000225766.3|Sorbs1|ENSMUSG00000025006.19|sorbin and SH3 domain containing 1
mm39_v1_chr18_+_52598748_52598782	6.245841085987678e-05	Rfx3_Rfx1_Rfx4	ENSMUST00000025406.9|Srfbp1|ENSMUSG00000024528.9|serum response factor binding protein 1
mm39_v1_chrX_+_35459557_35459588	5.0229729075567405e-05	Rfx3_Rfx1_Rfx4	ENSMUST00000115258.9|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr9_-_56759229_56759296	1.8581788800747268e-05	Rfx3_Rfx1_Rfx4	ENSMUST00000055036.7|Odf3l1|ENSMUSG00000045620.8|outer dense fiber of sperm tails 3-like 1
mm39_v1_chr16_+_13572409_13572500	1.6193944002249792e-05	Rfx3_Rfx1_Rfx4	ENSMUST00000239037.2|A930007A09Rik|ENSMUSG00000118559.3|RIKEN cDNA A930007A09 gene
mm39_v1_chr16_+_32315090_32315118	9.592139185846965e-06	Rfx3_Rfx1_Rfx4	ENSMUST00000231510.2|Zdhhc19|ENSMUSG00000052363.9|zinc finger, DHHC domain containing 19
