mm39_v1_chr9_+_119978773_119978815	1.12511321083384	Sox6_Sox9	ENSMUST00000068698.15|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein	ENSMUST00000215512.2|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein	ENSMUST00000111627.3|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein	ENSMUST00000093773.8|Mobp|ENSMUSG00000032517.17|myelin-associated oligodendrocytic basic protein
mm39_v1_chr1_-_72914036_72914050	1.0552282284462924	Sox6_Sox9	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr11_+_45946800_45946895	0.9770491442362945	Sox6_Sox9	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr19_-_4384029_4384059	0.863715457925213	Sox6_Sox9	ENSMUST00000176653.2|Kdm2a|ENSMUSG00000054611.18|lysine (K)-specific demethylase 2A
mm39_v1_chrX_-_101114906_101114959	0.793401464216829	Sox6_Sox9	ENSMUST00000188731.2|Rtl5|ENSMUSG00000049191.13|retrotransposon Gag like 5
mm39_v1_chr7_-_100164007_100164167	0.7448895189741379	Sox6_Sox9	ENSMUST00000207405.2|Dnajb13|ENSMUSG00000030708.15|DnaJ heat shock protein family (Hsp40) member B13
mm39_v1_chr1_+_62742444_62742511	0.6435302725549339	Sox6_Sox9	ENSMUST00000102822.9|Nrp2|ENSMUSG00000025969.16|neuropilin 2	ENSMUST00000075144.12|Nrp2|ENSMUSG00000025969.16|neuropilin 2
mm39_v1_chr8_+_109441276_109441276	0.505645150982831	Sox6_Sox9	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr5_-_132570710_132570860	0.4918051002365449	Sox6_Sox9	ENSMUST00000182974.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr16_+_16887991_16888079	0.48926414294031806	Sox6_Sox9	ENSMUST00000232258.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr4_+_137720326_137720359	0.45719916869146643	Sox6_Sox9	ENSMUST00000139759.8|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000058133.10|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000105830.9|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000084215.12|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3
mm39_v1_chr15_-_79543090_79543157	0.4542872511923913	Sox6_Sox9	ENSMUST00000109648.9|Fam227a|ENSMUSG00000042564.14|family with sequence similarity 227, member A
mm39_v1_chr6_-_87312743_87312748	0.452358635265669	Sox6_Sox9	ENSMUST00000042025.12|Antxr1|ENSMUSG00000033420.13|anthrax toxin receptor 1	ENSMUST00000205033.2|Antxr1|ENSMUSG00000033420.13|anthrax toxin receptor 1
mm39_v1_chr4_-_155947819_155947819	0.4177083693765024	Sox6_Sox9	ENSMUST00000030949.4|Tas1r3|ENSMUSG00000029072.4|taste receptor, type 1, member 3
mm39_v1_chr1_+_132973724_132973820	0.39805430389605	Sox6_Sox9	ENSMUST00000077730.7|Pik3c2b|ENSMUSG00000026447.18|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
mm39_v1_chr16_-_4031814_4031861	0.3975579215262205	Sox6_Sox9	ENSMUST00000023165.9|Crebbp|ENSMUSG00000022521.11|CREB binding protein
mm39_v1_chr1_+_34044940_34044989	0.395372684663492	Sox6_Sox9	ENSMUST00000187486.7|Dst|ENSMUSG00000026131.21|dystonin	ENSMUST00000182697.8|Dst|ENSMUSG00000026131.21|dystonin
mm39_v1_chr14_+_26761023_26761036	0.39175969397105365	Sox6_Sox9	ENSMUST00000223942.2|Il17rd|ENSMUSG00000040717.7|interleukin 17 receptor D
mm39_v1_chr5_+_75316552_75316581	0.38190738565594295	Sox6_Sox9	ENSMUST00000168162.5|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr7_-_126275529_126275604	0.37422991601466227	Sox6_Sox9	ENSMUST00000106372.11|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000155419.3|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000106373.9|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1
mm39_v1_chr10_-_37014859_37014933	0.3661412855533067	Sox6_Sox9	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr17_-_32074754_32074780	0.353825164037468	Sox6_Sox9	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr6_+_86381318_86381362	0.3489458786190354	Sox6_Sox9	ENSMUST00000113713.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr16_-_90081300_90081391	0.34637501475601246	Sox6_Sox9	ENSMUST00000039280.9|Scaf4|ENSMUSG00000022983.17|SR-related CTD-associated factor 4	ENSMUST00000232371.2|Scaf4|ENSMUSG00000022983.17|SR-related CTD-associated factor 4
mm39_v1_chr19_+_4806544_4806654	0.3427943183906649	Sox6_Sox9	ENSMUST00000182821.8|Rbm4b|ENSMUSG00000033760.18|RNA binding motif protein 4B	ENSMUST00000036744.8|Rbm4b|ENSMUSG00000033760.18|RNA binding motif protein 4B
mm39_v1_chr12_-_76224025_76224039	0.34260275668108564	Sox6_Sox9	ENSMUST00000101291.11|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)	ENSMUST00000218621.2|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)	ENSMUST00000076634.5|Esr2|ENSMUSG00000021055.15|estrogen receptor 2 (beta)
mm39_v1_chr2_+_146063841_146063841	0.3410507953248581	Sox6_Sox9	ENSMUST00000089257.6|Insm1|ENSMUSG00000068154.6|insulinoma-associated 1
mm39_v1_chr15_+_25622611_25622644	0.34001455381791396	Sox6_Sox9	ENSMUST00000110457.8|Myo10|ENSMUSG00000022272.18|myosin X	ENSMUST00000137601.8|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr4_+_122889737_122889753	0.3390394197797844	Sox6_Sox9	ENSMUST00000106252.9|Mycl|ENSMUSG00000028654.14|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
mm39_v1_chr1_-_176641607_176641633	0.3349237772431866	Sox6_Sox9	ENSMUST00000195717.6|Cep170|ENSMUSG00000057335.12|centrosomal protein 170	ENSMUST00000192961.6|Cep170|ENSMUSG00000057335.12|centrosomal protein 170
mm39_v1_chr16_+_16888145_16888186	0.3347678683307277	Sox6_Sox9	ENSMUST00000232574.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr1_-_93029532_93029544	0.33319916453353043	Sox6_Sox9	ENSMUST00000171796.8|Kif1a|ENSMUSG00000014602.16|kinesin family member 1A
mm39_v1_chr6_-_83433357_83433404	0.3227740611419573	Sox6_Sox9	ENSMUST00000186548.7|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr16_+_57369595_57369620	0.3220344566245427	Sox6_Sox9	ENSMUST00000159414.2|Filip1l|ENSMUSG00000043336.15|filamin A interacting protein 1-like
mm39_v1_chr13_+_23930717_23930746	0.3138118241074638	Sox6_Sox9	ENSMUST00000099703.5|H2bc3|ENSMUSG00000075031.5|H2B clustered histone 3
mm39_v1_chr5_+_53748323_53748408	0.3106649902077484	Sox6_Sox9	ENSMUST00000201883.4|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr6_+_51409643_51409654	0.3030167364402143	Sox6_Sox9	ENSMUST00000005103.12|Nfe2l3|ENSMUSG00000029832.17|nuclear factor, erythroid derived 2, like 3
mm39_v1_chr17_-_34340918_34340962	0.30200549377689834	Sox6_Sox9	ENSMUST00000151986.2|Brd2|ENSMUSG00000024335.21|bromodomain containing 2
mm39_v1_chr4_+_122889828_122889897	0.30082881786246096	Sox6_Sox9	ENSMUST00000030407.8|Mycl|ENSMUSG00000028654.14|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
mm39_v1_chr3_-_10273628_10273646	0.2834982621689417	Sox6_Sox9	ENSMUST00000029041.6|Fabp4|ENSMUSG00000062515.4|fatty acid binding protein 4, adipocyte
mm39_v1_chr3_-_66204228_66204258	0.2824940612305017	Sox6_Sox9	ENSMUST00000029419.8|Veph1|ENSMUSG00000027831.10|ventricular zone expressed PH domain-containing 1
mm39_v1_chr8_-_106016097_106016173	0.28093821185455625	Sox6_Sox9	ENSMUST00000171788.8|4931428F04Rik|ENSMUSG00000014837.16|RIKEN cDNA 4931428F04 gene
mm39_v1_chr1_+_176642226_176642226	0.2793993415490921	Sox6_Sox9	ENSMUST00000056773.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8	ENSMUST00000027785.15|Sdccag8|ENSMUSG00000026504.18|serologically defined colon cancer antigen 8
mm39_v1_chr19_-_56810593_56810654	0.2744880981065745	Sox6_Sox9	ENSMUST00000118592.8|Ccdc186|ENSMUSG00000035173.15|coiled-coil domain containing 186
mm39_v1_chr5_+_34706936_34707032	0.269567265718734	Sox6_Sox9	ENSMUST00000179943.3|Sh3bp2|ENSMUSG00000054520.16|SH3-domain binding protein 2
mm39_v1_chr7_-_103463120_103463203	0.26876304531766726	Sox6_Sox9	ENSMUST00000098192.4|Hbb-bt|ENSMUSG00000073940.4|hemoglobin, beta adult t chain
mm39_v1_chr16_+_43067641_43067673	0.2687135623928664	Sox6_Sox9	ENSMUST00000079441.13|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114691.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr5_+_3978032_3978178	0.2667973737236295	Sox6_Sox9	ENSMUST00000143365.8|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr13_+_43276323_43276345	0.266071779701525	Sox6_Sox9	ENSMUST00000136576.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr1_+_160733942_160734030	0.26484219440671475	Sox6_Sox9	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr14_+_63075127_63075203	0.26206426232053454	Sox6_Sox9	ENSMUST00000014691.10|Wdfy2|ENSMUSG00000014547.11|WD repeat and FYVE domain containing 2
mm39_v1_chr3_+_63203235_63203293	0.26035637883729734	Sox6_Sox9	ENSMUST00000194134.6|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr2_+_156154508_156154553	0.25548258532623425	Sox6_Sox9	ENSMUST00000073942.12|Cnbd2|ENSMUSG00000038085.14|cyclic nucleotide binding domain containing 2	ENSMUST00000109580.2|Cnbd2|ENSMUSG00000038085.14|cyclic nucleotide binding domain containing 2
mm39_v1_chr17_+_12338161_12338235	0.2532419036818217	Sox6_Sox9	ENSMUST00000024594.9|Agpat4|ENSMUSG00000023827.9|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm39_v1_chr1_+_39940189_39940390	0.25237449618087376	Sox6_Sox9	ENSMUST00000191761.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000193682.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000195860.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000195259.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000195636.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000192509.6|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr6_+_86381236_86381302	0.24770602582496534	Sox6_Sox9	ENSMUST00000095752.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1	ENSMUST00000130967.8|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr11_-_58353096_58353096	0.24707506959687867	Sox6_Sox9	ENSMUST00000215691.2|Olfr30|ENSMUSG00000043314.7|olfactory receptor 30
mm39_v1_chr7_+_75105282_75105290	0.24566811695646978	Sox6_Sox9	ENSMUST00000207750.2|Akap13|ENSMUSG00000066406.17|A kinase (PRKA) anchor protein 13	ENSMUST00000166315.7|Akap13|ENSMUSG00000066406.17|A kinase (PRKA) anchor protein 13
mm39_v1_chr17_-_48716756_48716934	0.24378702474704758	Sox6_Sox9	ENSMUST00000160319.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000159535.2|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000078800.13|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000046719.14|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000162460.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha
mm39_v1_chr4_+_83335947_83335995	0.24257753281356384	Sox6_Sox9	ENSMUST00000030206.10|Snapc3|ENSMUSG00000028483.14|small nuclear RNA activating complex, polypeptide 3	ENSMUST00000071544.11|Snapc3|ENSMUSG00000028483.14|small nuclear RNA activating complex, polypeptide 3
mm39_v1_chr8_+_70275079_70275243	0.241727938472052	Sox6_Sox9	ENSMUST00000164890.8|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2	ENSMUST00000034325.6|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2	ENSMUST00000238452.2|Lpar2|ENSMUSG00000031861.17|lysophosphatidic acid receptor 2
mm39_v1_chr17_+_47747657_47747730	0.23822437166163873	Sox6_Sox9	ENSMUST00000150819.3|AI661453|ENSMUSG00000034382.15|expressed sequence AI661453
mm39_v1_chr6_+_34575435_34575521	0.23818283153989558	Sox6_Sox9	ENSMUST00000079391.10|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000142512.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000115027.8|Cald1|ENSMUSG00000029761.17|caldesmon 1	ENSMUST00000115026.8|Cald1|ENSMUSG00000029761.17|caldesmon 1
mm39_v1_chr10_+_79986988_79987212	0.23659653087625185	Sox6_Sox9	ENSMUST00000146516.8|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000144526.2|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr7_+_96730915_96731001	0.23645965323110502	Sox6_Sox9	ENSMUST00000206791.2|Gab2|ENSMUSG00000004508.7|growth factor receptor bound protein 2-associated protein 2
mm39_v1_chr3_+_20011201_20011237	0.2333559176817485	Sox6_Sox9	ENSMUST00000091309.12|Cp|ENSMUSG00000003617.17|ceruloplasmin	ENSMUST00000108329.8|Cp|ENSMUSG00000003617.17|ceruloplasmin	ENSMUST00000003714.13|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr11_+_87651359_87651413	0.23277552146890193	Sox6_Sox9	ENSMUST00000039627.12|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1	ENSMUST00000100644.10|Tspoap1|ENSMUSG00000034156.17|TSPO associated protein 1
mm39_v1_chr3_-_9898713_9898739	0.2323692757262235	Sox6_Sox9	ENSMUST00000161949.8|Pag1|ENSMUSG00000027508.16|phosphoprotein associated with glycosphingolipid microdomains 1
mm39_v1_chr9_+_18766229_18766229	0.2317308371448815	Sox6_Sox9	ENSMUST00000212229.3|Olfr829|ENSMUSG00000051414.6|olfactory receptor 829
mm39_v1_chr12_+_85043083_85043193	0.23164531938908878	Sox6_Sox9	ENSMUST00000168977.8|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1	ENSMUST00000021670.15|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1
mm39_v1_chr10_+_43455157_43455174	0.2316002465976798	Sox6_Sox9	ENSMUST00000058714.10|Cd24a|ENSMUSG00000047139.10|CD24a antigen
mm39_v1_chr8_-_106015682_106015725	0.22915195282711348	Sox6_Sox9	ENSMUST00000212922.2|4931428F04Rik|ENSMUSG00000014837.16|RIKEN cDNA 4931428F04 gene	ENSMUST00000212219.2|4931428F04Rik|ENSMUSG00000014837.16|RIKEN cDNA 4931428F04 gene
mm39_v1_chr7_+_128290204_128290224	0.2277149764205131	Sox6_Sox9	ENSMUST00000118605.2|Inpp5f|ENSMUSG00000042105.19|inositol polyphosphate-5-phosphatase F
mm39_v1_chr4_-_114991478_114991478	0.22562592558536856	Sox6_Sox9	ENSMUST00000106545.8|Cyp4x1|ENSMUSG00000047155.14|cytochrome P450, family 4, subfamily x, polypeptide 1
mm39_v1_chr6_-_31540913_31540924	0.22512952819473842	Sox6_Sox9	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr12_+_40495951_40496015	0.22383356191333553	Sox6_Sox9	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr10_-_130291919_130291919	0.22345595988721823	Sox6_Sox9	ENSMUST00000170257.4|Vmn2r86|ENSMUSG00000092162.4|vomeronasal 2, receptor 86
mm39_v1_chr6_+_65648574_65648602	0.22019492739487592	Sox6_Sox9	ENSMUST00000054351.6|Ndnf|ENSMUSG00000049001.6|neuron-derived neurotrophic factor
mm39_v1_chr11_-_74480870_74481012	0.21995842523069264	Sox6_Sox9	ENSMUST00000145524.2|Rap1gap2|ENSMUSG00000038807.20|RAP1 GTPase activating protein 2	ENSMUST00000102521.9|Rap1gap2|ENSMUSG00000038807.20|RAP1 GTPase activating protein 2
mm39_v1_chr9_+_27702243_27702299	0.21995750292395963	Sox6_Sox9	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chr16_+_3854806_3855016	0.21846293705915193	Sox6_Sox9	ENSMUST00000137748.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000006136.11|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000157044.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000120009.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I
mm39_v1_chr11_-_58521327_58521327	0.20918590604130063	Sox6_Sox9	ENSMUST00000214132.2|Olfr323|ENSMUSG00000043880.6|olfactory receptor 323
mm39_v1_chr5_+_32293145_32293201	0.2051137880279182	Sox6_Sox9	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr10_+_39488930_39488930	0.20210210452615698	Sox6_Sox9	ENSMUST00000019987.7|Traf3ip2|ENSMUSG00000019842.7|TRAF3 interacting protein 2
mm39_v1_chr18_+_65831324_65831355	0.20070377141233478	Sox6_Sox9	ENSMUST00000115097.8|Oacyl|ENSMUSG00000046610.16|O-acyltransferase like	ENSMUST00000117694.2|Oacyl|ENSMUSG00000046610.16|O-acyltransferase like	ENSMUST00000235962.2|Oacyl|ENSMUSG00000046610.16|O-acyltransferase like
mm39_v1_chr2_-_165210622_165210649	0.19940418153062822	Sox6_Sox9	ENSMUST00000141140.2|Zfp663|ENSMUSG00000056824.16|zinc finger protein 663	ENSMUST00000103085.8|Zfp663|ENSMUSG00000056824.16|zinc finger protein 663
mm39_v1_chrX_-_135769285_135769504	0.19933390486251726	Sox6_Sox9	ENSMUST00000058814.7|Rab9b|ENSMUSG00000043463.7|RAB9B, member RAS oncogene family
mm39_v1_chr5_-_131645437_131645450	0.1990472330576417	Sox6_Sox9	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr5_+_34140777_34140873	0.1974341257464265	Sox6_Sox9	ENSMUST00000094869.12|Gm1673|ENSMUSG00000070858.13|predicted gene 1673	ENSMUST00000114383.8|Gm1673|ENSMUSG00000070858.13|predicted gene 1673
mm39_v1_chr6_+_137229427_137229472	0.19690025917051063	Sox6_Sox9	ENSMUST00000077115.13|Ptpro|ENSMUSG00000030223.15|protein tyrosine phosphatase, receptor type, O
mm39_v1_chr2_+_158508609_158508660	0.19631775927492348	Sox6_Sox9	ENSMUST00000103116.10|Ppp1r16b|ENSMUSG00000037754.14|protein phosphatase 1, regulatory subunit 16B
mm39_v1_chr7_-_30288142_30288182	0.1951256884754255	Sox6_Sox9	ENSMUST00000006470.14|Kmt2b|ENSMUSG00000006307.17|lysine (K)-specific methyltransferase 2B	ENSMUST00000108154.9|Kmt2b|ENSMUSG00000006307.17|lysine (K)-specific methyltransferase 2B
mm39_v1_chr11_-_49077986_49078023	0.19406322386668776	Sox6_Sox9	ENSMUST00000046522.13|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9
mm39_v1_chr7_+_26895206_26895255	0.19315020017249385	Sox6_Sox9	ENSMUST00000179391.8|BC024978|ENSMUSG00000078786.10|cDNA sequence BC024978	ENSMUST00000108379.8|BC024978|ENSMUSG00000078786.10|cDNA sequence BC024978
mm39_v1_chr3_-_96833336_96833383	0.19302724530563062	Sox6_Sox9	ENSMUST00000062944.7|Gja8|ENSMUSG00000049908.7|gap junction protein, alpha 8
mm39_v1_chr6_+_17463819_17463833	0.19258836326791443	Sox6_Sox9	ENSMUST00000140070.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chrX_-_133062677_133062677	0.19179913367438706	Sox6_Sox9	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr7_+_99030621_99030781	0.19118514077000748	Sox6_Sox9	ENSMUST00000037528.10|Gdpd5|ENSMUSG00000035314.11|glycerophosphodiester phosphodiesterase domain containing 5
mm39_v1_chr17_-_20455309_20455314	0.19030935745522032	Sox6_Sox9	ENSMUST00000232877.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233461.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233468.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000232768.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233950.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000232803.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105	ENSMUST00000233786.3|Vmn2r105|ENSMUSG00000091670.4|vomeronasal 2, receptor 105
mm39_v1_chr11_-_50183129_50183191	0.18726463906942986	Sox6_Sox9	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr10_+_66932235_66932313	0.18723004974669938	Sox6_Sox9	ENSMUST00000174317.8|Jmjd1c|ENSMUSG00000037876.18|jumonji domain containing 1C
mm39_v1_chr7_-_12853779_12853844	0.18679221579655175	Sox6_Sox9	ENSMUST00000227220.2|Vmn1r86|ENSMUSG00000070816.4|vomeronasal 1 receptor 86	ENSMUST00000227700.2|Vmn1r86|ENSMUSG00000070816.4|vomeronasal 1 receptor 86	ENSMUST00000226604.2|Vmn1r86|ENSMUSG00000070816.4|vomeronasal 1 receptor 86
mm39_v1_chr13_+_65426624_65426717	0.1838874712046703	Sox6_Sox9	ENSMUST00000126879.8|Zfp369|ENSMUSG00000021514.19|zinc finger protein 369	ENSMUST00000130799.8|Zfp369|ENSMUSG00000021514.19|zinc finger protein 369	ENSMUST00000155732.2|Zfp369|ENSMUSG00000021514.19|zinc finger protein 369
mm39_v1_chr5_-_136275407_136275412	0.18368952311180117	Sox6_Sox9	ENSMUST00000196245.2|Sh2b2|ENSMUSG00000005057.14|SH2B adaptor protein 2
mm39_v1_chr3_-_9898676_9898706	0.1829454748200298	Sox6_Sox9	ENSMUST00000108384.9|Pag1|ENSMUSG00000027508.16|phosphoprotein associated with glycosphingolipid microdomains 1
mm39_v1_chr9_+_72832904_72832955	0.1824601343436682	Sox6_Sox9	ENSMUST00000038489.6|Pygo1|ENSMUSG00000034910.6|pygopus 1
mm39_v1_chr11_+_67477347_67477366	0.18129943284237354	Sox6_Sox9	ENSMUST00000108682.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr13_-_23015518_23015518	0.1764176139257265	Sox6_Sox9	ENSMUST00000226294.2|Vmn1r210|ENSMUSG00000061296.3|vomeronasal 1 receptor 210	ENSMUST00000226180.2|Vmn1r210|ENSMUSG00000061296.3|vomeronasal 1 receptor 210
mm39_v1_chr18_-_15196612_15196675	0.1763959041456059	Sox6_Sox9	ENSMUST00000168989.9|Kctd1|ENSMUSG00000036225.16|potassium channel tetramerisation domain containing 1
mm39_v1_chr15_-_85387428_85387428	0.17605101355727373	Sox6_Sox9	ENSMUST00000178942.2|7530416G11Rik|ENSMUSG00000096607.2|RIKEN cDNA 7530416G11 gene
mm39_v1_chr4_-_63321591_63321613	0.1737946414225924	Sox6_Sox9	ENSMUST00000035724.5|Akna|ENSMUSG00000039158.12|AT-hook transcription factor
mm39_v1_chr19_+_5742880_5742923	0.17362800862686337	Sox6_Sox9	ENSMUST00000235661.2|Map3k11|ENSMUSG00000004054.10|mitogen-activated protein kinase kinase kinase 11
mm39_v1_chr2_+_120307390_120307457	0.16597668270205196	Sox6_Sox9	ENSMUST00000110716.9|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000028748.14|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000090028.13|Capn3|ENSMUSG00000079110.13|calpain 3	ENSMUST00000110719.4|Capn3|ENSMUSG00000079110.13|calpain 3
mm39_v1_chr2_+_32041083_32041274	0.16400331340375365	Sox6_Sox9	ENSMUST00000036691.14|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B	ENSMUST00000069817.15|Prrc2b|ENSMUSG00000039262.17|proline-rich coiled-coil 2B
mm39_v1_chr13_+_63387870_63387908	0.16341708873853497	Sox6_Sox9	ENSMUST00000159152.3|Aopep|ENSMUSG00000021458.18|aminopeptidase O	ENSMUST00000221820.2|Aopep|ENSMUSG00000021458.18|aminopeptidase O
mm39_v1_chr17_+_47747540_47747564	0.16281311687896327	Sox6_Sox9	ENSMUST00000037701.13|AI661453|ENSMUSG00000034382.15|expressed sequence AI661453
mm39_v1_chr2_-_143704853_143704870	0.16153418685990148	Sox6_Sox9	ENSMUST00000099296.4|Bfsp1|ENSMUSG00000027420.14|beaded filament structural protein 1, in lens-CP94
mm39_v1_chr2_+_37406630_37406647	0.1568430632245326	Sox6_Sox9	ENSMUST00000065441.7|Gpr21|ENSMUSG00000053164.7|G protein-coupled receptor 21
mm39_v1_chr3_+_94385602_94385652	0.15414016945830353	Sox6_Sox9	ENSMUST00000199884.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3	ENSMUST00000198316.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3	ENSMUST00000197558.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr11_+_67345895_67345982	0.1524657296031958	Sox6_Sox9	ENSMUST00000108681.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr11_-_68848271_68848311	0.15219976461634022	Sox6_Sox9	ENSMUST00000108671.2|Arhgef15|ENSMUSG00000052921.14|Rho guanine nucleotide exchange factor (GEF) 15
mm39_v1_chr12_-_81827893_81827949	0.14943516472926988	Sox6_Sox9	ENSMUST00000035987.9|Map3k9|ENSMUSG00000042724.9|mitogen-activated protein kinase kinase kinase 9
mm39_v1_chr9_-_45817666_45817750	0.14850969449012502	Sox6_Sox9	ENSMUST00000161187.8|Rnf214|ENSMUSG00000042790.17|ring finger protein 214
mm39_v1_chr18_-_16942289_16942384	0.1483051122943678	Sox6_Sox9	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr11_-_96868483_96868537	0.14768471899751556	Sox6_Sox9	ENSMUST00000107624.8|Sp2|ENSMUSG00000018678.14|Sp2 transcription factor
mm39_v1_chr1_-_64161415_64161455	0.1475752069435589	Sox6_Sox9	ENSMUST00000135075.2|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr16_-_90081188_90081236	0.14715083868969522	Sox6_Sox9	ENSMUST00000163419.9|Scaf4|ENSMUSG00000022983.17|SR-related CTD-associated factor 4
mm39_v1_chr13_+_14238361_14238407	0.14683101663393472	Sox6_Sox9	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr10_-_62628008_62628070	0.1457137472846669	Sox6_Sox9	ENSMUST00000217768.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000020268.7|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000218946.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000219527.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1
mm39_v1_chr2_-_84481058_84481093	0.14273926988537702	Sox6_Sox9	ENSMUST00000111670.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111697.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111696.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111678.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111690.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111695.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111677.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111698.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000099941.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111676.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111694.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111675.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111689.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111687.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111692.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111685.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111686.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111688.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111693.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111684.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1
mm39_v1_chr18_+_4921663_4921726	0.1411944980278848	Sox6_Sox9	ENSMUST00000143254.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr9_-_60418286_60418318	0.14101398482610936	Sox6_Sox9	ENSMUST00000098660.10|Thsd4|ENSMUSG00000032289.16|thrombospondin, type I, domain containing 4
mm39_v1_chr12_+_85043262_85043269	0.13950949130638002	Sox6_Sox9	ENSMUST00000101202.10|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1
mm39_v1_chr6_-_132291714_132291720	0.1382898312637755	Sox6_Sox9	ENSMUST00000048686.9|Prpmp5|ENSMUSG00000107874.2|proline-rich protein MP5
mm39_v1_chr12_+_25024913_25024992	0.13653685321169906	Sox6_Sox9	ENSMUST00000066652.7|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000220459.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220	ENSMUST00000222941.2|Kidins220|ENSMUSG00000036333.12|kinase D-interacting substrate 220
mm39_v1_chr1_-_173703424_173703430	0.1350902870447606	Sox6_Sox9	ENSMUST00000186442.7|Mndal|ENSMUSG00000090272.10|myeloid nuclear differentiation antigen like
mm39_v1_chr9_+_110361561_110361669	0.1350472069965972	Sox6_Sox9	ENSMUST00000153838.8|Setd2|ENSMUSG00000044791.17|SET domain containing 2
mm39_v1_chr3_-_116601815_116601849	0.1349004735821406	Sox6_Sox9	ENSMUST00000040603.14|Agl|ENSMUSG00000033400.15|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm39_v1_chr3_-_57599956_57599970	0.13362664016155243	Sox6_Sox9	ENSMUST00000238789.2|Ankub1|ENSMUSG00000074591.9|ankrin repeat and ubiquitin domain containing 1	ENSMUST00000197088.5|Ankub1|ENSMUSG00000074591.9|ankrin repeat and ubiquitin domain containing 1	ENSMUST00000099091.4|Ankub1|ENSMUSG00000074591.9|ankrin repeat and ubiquitin domain containing 1
mm39_v1_chr1_-_181847492_181847555	0.13346588633877357	Sox6_Sox9	ENSMUST00000177811.8|Enah|ENSMUSG00000022995.17|ENAH actin regulator	ENSMUST00000111025.8|Enah|ENSMUSG00000022995.17|ENAH actin regulator	ENSMUST00000111024.10|Enah|ENSMUSG00000022995.17|ENAH actin regulator
mm39_v1_chr14_-_70855980_70856014	0.13327702384925252	Sox6_Sox9	ENSMUST00000228001.2|Dmtn|ENSMUSG00000022099.18|dematin actin binding protein
mm39_v1_chr2_-_165740864_165740936	0.13145827210289032	Sox6_Sox9	ENSMUST00000136842.2|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8
mm39_v1_chr7_-_122969064_122969144	0.12867633427562805	Sox6_Sox9	ENSMUST00000207010.2|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000167309.8|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000205262.2|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000106442.9|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17	ENSMUST00000098060.5|Arhgap17|ENSMUSG00000030766.16|Rho GTPase activating protein 17
mm39_v1_chr6_+_125529911_125529943	0.12723141336764743	Sox6_Sox9	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr8_-_85663976_85663996	0.12709987829752545	Sox6_Sox9	ENSMUST00000109741.9|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1	ENSMUST00000119820.2|Mast1|ENSMUSG00000053693.17|microtubule associated serine/threonine kinase 1
mm39_v1_chr5_+_34706911_34706925	0.12462370983702378	Sox6_Sox9	ENSMUST00000118545.8|Sh3bp2|ENSMUSG00000054520.16|SH3-domain binding protein 2
mm39_v1_chr12_-_72283465_72283498	0.12459518785860911	Sox6_Sox9	ENSMUST00000021497.16|Rtn1|ENSMUSG00000021087.19|reticulon 1	ENSMUST00000137990.2|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chrX_+_56008685_56008685	0.12456585555372328	Sox6_Sox9	ENSMUST00000096431.10|Adgrg4|ENSMUSG00000053852.12|adhesion G protein-coupled receptor G4
mm39_v1_chr8_+_109429732_109429732	0.12264802291268576	Sox6_Sox9	ENSMUST00000188994.2|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr16_-_23807602_23807602	0.1221489881835482	Sox6_Sox9	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chr7_+_127344942_127344999	0.12191687664076817	Sox6_Sox9	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr1_+_88154727_88154787	0.12150746274109271	Sox6_Sox9	ENSMUST00000061013.13|Mroh2a|ENSMUSG00000079429.10|maestro heat-like repeat family member 2A	ENSMUST00000113130.8|Mroh2a|ENSMUSG00000079429.10|maestro heat-like repeat family member 2A
mm39_v1_chr4_+_100633860_100633889	0.1203785845022372	Sox6_Sox9	ENSMUST00000030257.15|Cachd1|ENSMUSG00000028532.15|cache domain containing 1	ENSMUST00000097955.3|Cachd1|ENSMUSG00000028532.15|cache domain containing 1
mm39_v1_chr7_+_16044336_16044380	0.11994940622514093	Sox6_Sox9	ENSMUST00000136781.2|Bbc3|ENSMUSG00000002083.14|BCL2 binding component 3
mm39_v1_chr2_-_146353911_146353936	0.11900899681855039	Sox6_Sox9	ENSMUST00000109986.9|Ralgapa2|ENSMUSG00000037110.21|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm39_v1_chr15_+_99936516_99936552	0.11898388008737061	Sox6_Sox9	ENSMUST00000100203.10|Dip2b|ENSMUSG00000023026.17|disco interacting protein 2 homolog B
mm39_v1_chr17_+_24026892_24027047	0.11890294359475528	Sox6_Sox9	ENSMUST00000191385.3|Srrm2|ENSMUSG00000039218.18|serine/arginine repetitive matrix 2
mm39_v1_chr15_-_102630589_102630613	0.11870767496892935	Sox6_Sox9	ENSMUST00000023818.11|Calcoco1|ENSMUSG00000023055.11|calcium binding and coiled coil domain 1
mm39_v1_chr11_+_44508137_44508169	0.11714805633246843	Sox6_Sox9	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr8_+_45960804_45960847	0.11646978205788563	Sox6_Sox9	ENSMUST00000067065.14|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000124544.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000138049.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000132139.9|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr5_+_36050663_36050817	0.11611426489420883	Sox6_Sox9	ENSMUST00000064571.11|Afap1|ENSMUSG00000029094.13|actin filament associated protein 1
mm39_v1_chr8_+_11362805_11362867	0.11603538910147337	Sox6_Sox9	ENSMUST00000033899.14|Col4a2|ENSMUSG00000031503.14|collagen, type IV, alpha 2
mm39_v1_chr13_-_21744063_21744063	0.11356446115465864	Sox6_Sox9	ENSMUST00000217519.2|Olfr1535|ENSMUSG00000054890.3|olfactory receptor 1535
mm39_v1_chr6_-_12749192_12749252	0.11280915928042214	Sox6_Sox9	ENSMUST00000172356.8|Thsd7a|ENSMUSG00000032625.15|thrombospondin, type I, domain containing 7A
mm39_v1_chr1_-_153363354_153363411	0.1110090016335594	Sox6_Sox9	ENSMUST00000186380.7|Dhx9|ENSMUSG00000042699.12|DEAH (Asp-Glu-Ala-His) box polypeptide 9	ENSMUST00000188345.2|Dhx9|ENSMUSG00000042699.12|DEAH (Asp-Glu-Ala-His) box polypeptide 9	ENSMUST00000042141.12|Dhx9|ENSMUSG00000042699.12|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm39_v1_chr3_+_101284391_101284421	0.11012703840641873	Sox6_Sox9	ENSMUST00000043983.11|Igsf3|ENSMUSG00000042035.12|immunoglobulin superfamily, member 3
mm39_v1_chr8_+_107141948_107142028	0.1096975441835789	Sox6_Sox9	ENSMUST00000034382.8|Zfp90|ENSMUSG00000031907.10|zinc finger protein 90	ENSMUST00000212606.2|Zfp90|ENSMUSG00000031907.10|zinc finger protein 90
mm39_v1_chr7_-_127324788_127324788	0.10918364448876505	Sox6_Sox9	ENSMUST00000076091.4|Ctf2|ENSMUSG00000060034.6|cardiotrophin 2
mm39_v1_chr2_-_35994072_35994085	0.10686524556818072	Sox6_Sox9	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr3_+_94385661_94385801	0.10664309110673913	Sox6_Sox9	ENSMUST00000200342.5|Celf3|ENSMUSG00000028137.10|CUGBP, Elav-like family member 3
mm39_v1_chr6_-_116084810_116084841	0.10648774123385225	Sox6_Sox9	ENSMUST00000204353.3|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr6_-_87312681_87312706	0.10461179567952937	Sox6_Sox9	ENSMUST00000204805.3|Antxr1|ENSMUSG00000033420.13|anthrax toxin receptor 1
mm39_v1_chr17_-_37938000_37938090	0.10426037265906209	Sox6_Sox9	ENSMUST00000223366.2|Olfr115|ENSMUSG00000092413.7|olfactory receptor 115	ENSMUST00000216128.2|Olfr116|ENSMUSG00000061336.4|olfactory receptor 116
mm39_v1_chr16_+_34815177_34815240	0.10246284645222964	Sox6_Sox9	ENSMUST00000231589.2|Mylk|ENSMUSG00000022836.12|myosin, light polypeptide kinase
mm39_v1_chr5_-_146521629_146521691	0.10212960399617464	Sox6_Sox9	ENSMUST00000200112.2|Gpr12|ENSMUSG00000041468.8|G-protein coupled receptor 12	ENSMUST00000197431.2|Gpr12|ENSMUSG00000041468.8|G-protein coupled receptor 12	ENSMUST00000197825.2|Gpr12|ENSMUSG00000041468.8|G-protein coupled receptor 12
mm39_v1_chr13_-_41513215_41513357	0.10208056489035663	Sox6_Sox9	ENSMUST00000224803.2|Nedd9|ENSMUSG00000021365.16|neural precursor cell expressed, developmentally down-regulated gene 9
mm39_v1_chr1_-_57011595_57011661	0.10051217066376893	Sox6_Sox9	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr12_+_108572015_108572072	0.09999305265012719	Sox6_Sox9	ENSMUST00000109854.9|Evl|ENSMUSG00000021262.16|Ena-vasodilator stimulated phosphoprotein
mm39_v1_chr8_+_107142031_107142044	0.09686811283381525	Sox6_Sox9	ENSMUST00000212874.2|Zfp90|ENSMUSG00000031907.10|zinc finger protein 90
mm39_v1_chr13_-_93774469_93774469	0.09682500795405286	Sox6_Sox9	ENSMUST00000099309.6|Bhmt|ENSMUSG00000074768.7|betaine-homocysteine methyltransferase
mm39_v1_chr4_-_148215135_148215164	0.09510948139116703	Sox6_Sox9	ENSMUST00000030862.5|Draxin|ENSMUSG00000029005.5|dorsal inhibitory axon guidance protein
mm39_v1_chr7_-_81584081_81584221	0.09398470963952442	Sox6_Sox9	ENSMUST00000026094.6|Hdgfl3|ENSMUSG00000025104.14|HDGF like 3	ENSMUST00000107305.8|Hdgfl3|ENSMUSG00000025104.14|HDGF like 3
mm39_v1_chr4_+_137720755_137720824	0.09219255965919237	Sox6_Sox9	ENSMUST00000084214.12|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000105831.9|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3	ENSMUST00000203828.3|Eif4g3|ENSMUSG00000028760.17|eukaryotic translation initiation factor 4 gamma, 3
mm39_v1_chr5_+_128813232_128813244	0.08980195859746669	Sox6_Sox9	ENSMUST00000086056.8|Piwil1|ENSMUSG00000029423.11|piwi-like RNA-mediated gene silencing 1
mm39_v1_chr19_-_46315543_46315595	0.08881862307938632	Sox6_Sox9	ENSMUST00000223917.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000224447.2|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000041391.5|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing	ENSMUST00000096029.12|Psd|ENSMUSG00000037126.17|pleckstrin and Sec7 domain containing
mm39_v1_chr8_+_11778039_11778105	0.08809173772584605	Sox6_Sox9	ENSMUST00000110909.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr8_-_85526653_85526912	0.08682708594016225	Sox6_Sox9	ENSMUST00000126806.2|Nfix|ENSMUSG00000001911.17|nuclear factor I/X	ENSMUST00000076715.13|Nfix|ENSMUSG00000001911.17|nuclear factor I/X
mm39_v1_chr4_+_62537750_62537819	0.08617991176128414	Sox6_Sox9	ENSMUST00000084521.11|Rgs3|ENSMUSG00000059810.19|regulator of G-protein signaling 3	ENSMUST00000107424.2|Rgs3|ENSMUSG00000059810.19|regulator of G-protein signaling 3
mm39_v1_chr2_-_86061745_86061745	0.08605053002541233	Sox6_Sox9	ENSMUST00000216056.2|Olfr1047|ENSMUSG00000075196.4|olfactory receptor 1047
mm39_v1_chr9_-_57672375_57672432	0.08515861943206637	Sox6_Sox9	ENSMUST00000215233.2|Clk3|ENSMUSG00000032316.9|CDC-like kinase 3
mm39_v1_chr3_-_123484499_123484510	0.08464159116013656	Sox6_Sox9	ENSMUST00000154668.8|Ndst3|ENSMUSG00000027977.16|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm39_v1_chrX_-_142716200_142716307	0.08395581644275435	Sox6_Sox9	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr12_-_32000534_32000558	0.08336592724314068	Sox6_Sox9	ENSMUST00000172314.9|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr17_-_24863907_24863951	0.08309025998778807	Sox6_Sox9	ENSMUST00000234505.2|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm39_v1_chr16_+_31482658_31482731	0.08295855118886848	Sox6_Sox9	ENSMUST00000115201.8|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1
mm39_v1_chr1_+_132996237_132996317	0.08246883663435077	Sox6_Sox9	ENSMUST00000239467.2|Pik3c2b|ENSMUSG00000026447.18|phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta
mm39_v1_chr9_-_107648144_107648206	0.0817834633778563	Sox6_Sox9	ENSMUST00000183248.3|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182022.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000035199.13|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5	ENSMUST00000182659.8|Rbm5|ENSMUSG00000032580.13|RNA binding motif protein 5
mm39_v1_chr1_+_178146689_178146703	0.08068512233642151	Sox6_Sox9	ENSMUST00000027781.7|Cox20|ENSMUSG00000026500.7|cytochrome c oxidase assembly protein 20
mm39_v1_chr6_+_86381201_86381222	0.07942605127476672	Sox6_Sox9	ENSMUST00000095754.10|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1	ENSMUST00000095753.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr4_-_141327146_141327235	0.07815420359115428	Sox6_Sox9	ENSMUST00000141518.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1	ENSMUST00000127455.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1	ENSMUST00000105784.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1
mm39_v1_chr5_+_88712840_88712921	0.07808762629697721	Sox6_Sox9	ENSMUST00000196894.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3	ENSMUST00000198965.5|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr5_+_74696110_74696185	0.07790071201759699	Sox6_Sox9	ENSMUST00000080164.12|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000113536.8|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000113534.9|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000113535.9|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)	ENSMUST00000120618.6|Fip1l1|ENSMUSG00000029227.16|FIP1 like 1 (S. cerevisiae)
mm39_v1_chr9_+_64718596_64718622	0.07767330121728609	Sox6_Sox9	ENSMUST00000038890.6|Dennd4a|ENSMUSG00000053641.10|DENN/MADD domain containing 4A
mm39_v1_chr4_+_11579648_11579674	0.07661642948210695	Sox6_Sox9	ENSMUST00000180239.2|Fsbp|ENSMUSG00000094595.2|fibrinogen silencer binding protein
mm39_v1_chr1_-_153775944_153775957	0.07578291399541993	Sox6_Sox9	ENSMUST00000123490.2|Teddm2|ENSMUSG00000045968.8|transmembrane epididymal family member 2
mm39_v1_chr2_-_30793266_30793309	0.07525370266264335	Sox6_Sox9	ENSMUST00000102852.6|Ptges|ENSMUSG00000050737.14|prostaglandin E synthase
mm39_v1_chr14_-_51311892_51311892	0.07458278132139108	Sox6_Sox9	ENSMUST00000216202.2|Olfr750|ENSMUSG00000035932.7|olfactory receptor 750
mm39_v1_chr7_-_12743720_12743783	0.07442364395232995	Sox6_Sox9	ENSMUST00000210282.2|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45	ENSMUST00000172240.2|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45	ENSMUST00000051390.9|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45	ENSMUST00000209997.2|Zbtb45|ENSMUSG00000049600.9|zinc finger and BTB domain containing 45
mm39_v1_chr13_+_42205790_42205880	0.07293365943313561	Sox6_Sox9	ENSMUST00000220525.2|Hivep1|ENSMUSG00000021366.9|human immunodeficiency virus type I enhancer binding protein 1
mm39_v1_chr11_-_106469938_106469955	0.0722704486412521	Sox6_Sox9	ENSMUST00000103070.3|Tex2|ENSMUSG00000040548.17|testis expressed gene 2
mm39_v1_chr5_+_34140877_34140892	0.07200928591025425	Sox6_Sox9	ENSMUST00000114382.2|Gm1673|ENSMUSG00000070858.13|predicted gene 1673
mm39_v1_chr14_-_68893253_68893291	0.07179452160438086	Sox6_Sox9	ENSMUST00000225767.3|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28	ENSMUST00000111072.8|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28	ENSMUST00000022642.6|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28	ENSMUST00000224039.2|Adam28|ENSMUSG00000014725.17|a disintegrin and metallopeptidase domain 28
mm39_v1_chr8_+_26008773_26008788	0.07152511288827693	Sox6_Sox9	ENSMUST00000084027.13|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000178276.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000179592.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1
mm39_v1_chr8_-_23143422_23143474	0.07024961362069256	Sox6_Sox9	ENSMUST00000033938.7|Polb|ENSMUSG00000031536.7|polymerase (DNA directed), beta
mm39_v1_chr11_+_67477501_67477546	0.06982089462579068	Sox6_Sox9	ENSMUST00000108680.2|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr11_-_90578397_90578433	0.06904995253657623	Sox6_Sox9	ENSMUST00000107869.9|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)	ENSMUST00000154599.2|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)	ENSMUST00000107868.8|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)	ENSMUST00000020849.9|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)
mm39_v1_chrX_-_16777913_16778013	0.06868713922452394	Sox6_Sox9	ENSMUST00000040134.8|Ndp|ENSMUSG00000040138.8|Norrie disease (pseudoglioma) (human)
mm39_v1_chr6_-_122317457_122317471	0.06842640450145117	Sox6_Sox9	ENSMUST00000160843.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr13_+_81034214_81034320	0.06791909824686984	Sox6_Sox9	ENSMUST00000161441.2|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr12_+_20004506_20004506	0.06726809984452667	Sox6_Sox9	ENSMUST00000179133.2|Gm21863|ENSMUSG00000095470.2|predicted gene, 21863
mm39_v1_chr7_-_44702269_44702338	0.06679763355109326	Sox6_Sox9	ENSMUST00000057293.8|Prr12|ENSMUSG00000046574.9|proline rich 12
mm39_v1_chr5_-_123859070_123859125	0.06482266214342135	Sox6_Sox9	ENSMUST00000031376.12|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr2_+_156262756_156262837	0.0645646473597911	Sox6_Sox9	ENSMUST00000103137.10|Epb41l1|ENSMUSG00000027624.21|erythrocyte membrane protein band 4.1 like 1
mm39_v1_chr2_-_146353819_146353910	0.06437211527131075	Sox6_Sox9	ENSMUST00000131824.8|Ralgapa2|ENSMUSG00000037110.21|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm39_v1_chr13_-_54835508_54835623	0.06433698201861444	Sox6_Sox9	ENSMUST00000177950.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44	ENSMUST00000146931.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44
mm39_v1_chr13_-_14237980_14238073	0.06342608223466718	Sox6_Sox9	ENSMUST00000222687.2|Ggps1|ENSMUSG00000021302.11|geranylgeranyl diphosphate synthase 1	ENSMUST00000221338.2|Ggps1|ENSMUSG00000021302.11|geranylgeranyl diphosphate synthase 1	ENSMUST00000221713.2|Ggps1|ENSMUSG00000021302.11|geranylgeranyl diphosphate synthase 1	ENSMUST00000170957.3|Ggps1|ENSMUSG00000021302.11|geranylgeranyl diphosphate synthase 1
mm39_v1_chr17_-_35285146_35285165	0.06339399350584352	Sox6_Sox9	ENSMUST00000174190.2|Mpig6b|ENSMUSG00000073414.9|megakaryocyte and platelet inhibitory receptor G6b	ENSMUST00000097337.8|Mpig6b|ENSMUSG00000073414.9|megakaryocyte and platelet inhibitory receptor G6b
mm39_v1_chr8_+_71195681_71195768	0.06298688857660678	Sox6_Sox9	ENSMUST00000224874.2|Pde4c|ENSMUSG00000031842.16|phosphodiesterase 4C, cAMP specific
mm39_v1_chr6_-_99703344_99703375	0.06220460902708723	Sox6_Sox9	ENSMUST00000008273.8|Prok2|ENSMUSG00000030069.16|prokineticin 2	ENSMUST00000101120.11|Prok2|ENSMUSG00000030069.16|prokineticin 2	ENSMUST00000203738.2|Prok2|ENSMUSG00000030069.16|prokineticin 2
mm39_v1_chr9_+_39985125_39985125	0.06217118173727091	Sox6_Sox9	ENSMUST00000054051.5|Olfr982|ENSMUSG00000049010.7|olfactory receptor 982
mm39_v1_chr3_-_127631068_127631172	0.061561864172743765	Sox6_Sox9	ENSMUST00000051737.8|Ap1ar|ENSMUSG00000074238.7|adaptor-related protein complex 1 associated regulatory protein	ENSMUST00000200409.5|Ap1ar|ENSMUSG00000074238.7|adaptor-related protein complex 1 associated regulatory protein
mm39_v1_chr10_-_63174801_63174821	0.06129913370065965	Sox6_Sox9	ENSMUST00000020257.13|Sirt1|ENSMUSG00000020063.17|sirtuin 1	ENSMUST00000177694.8|Sirt1|ENSMUSG00000020063.17|sirtuin 1	ENSMUST00000105442.3|Sirt1|ENSMUSG00000020063.17|sirtuin 1
mm39_v1_chr5_+_43672856_43672881	0.05925170538023657	Sox6_Sox9	ENSMUST00000076939.10|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr2_+_102488985_102489014	0.057687803985937834	Sox6_Sox9	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr19_-_8382424_8382475	0.05685421246474567	Sox6_Sox9	ENSMUST00000064507.12|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30	ENSMUST00000120540.2|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30	ENSMUST00000096269.11|Slc22a30|ENSMUSG00000052562.16|solute carrier family 22, member 30
mm39_v1_chr2_-_18224293_18224368	0.056811507559176466	Sox6_Sox9	ENSMUST00000148401.8|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1
mm39_v1_chr4_-_131776368_131776468	0.05608614314386515	Sox6_Sox9	ENSMUST00000105981.9|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1	ENSMUST00000084253.10|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1	ENSMUST00000141291.3|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr18_+_37864045_37864063	0.056017221431596216	Sox6_Sox9	ENSMUST00000192535.2|Pcdhgb5|ENSMUSG00000103749.2|protocadherin gamma subfamily B, 5
mm39_v1_chr2_-_84481101_84481115	0.05547342374158762	Sox6_Sox9	ENSMUST00000111691.2|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1
mm39_v1_chr13_-_18118736_18118824	0.05440569507380356	Sox6_Sox9	ENSMUST00000009003.9|Rala|ENSMUSG00000008859.9|v-ral simian leukemia viral oncogene A (ras related)
mm39_v1_chr7_+_141503719_141503823	0.05438297037293455	Sox6_Sox9	ENSMUST00000105989.9|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000075528.12|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000174499.8|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2
mm39_v1_chr14_-_20668406_20668433	0.05384453290652382	Sox6_Sox9	ENSMUST00000035340.14|Usp54|ENSMUSG00000034235.18|ubiquitin specific peptidase 54
mm39_v1_chr11_-_76359222_76359313	0.05347748769082193	Sox6_Sox9	ENSMUST00000065028.14|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr10_-_17823736_17823846	0.053242828876110114	Sox6_Sox9	ENSMUST00000037879.8|Heca|ENSMUSG00000039879.10|hdc homolog, cell cycle regulator
mm39_v1_chr8_-_71848429_71848466	0.052704742689657046	Sox6_Sox9	ENSMUST00000049184.9|Ushbp1|ENSMUSG00000034911.9|USH1 protein network component harmonin binding protein 1
mm39_v1_chr18_-_60881679_60881768	0.05251185862947754	Sox6_Sox9	ENSMUST00000237783.2|Ndst1|ENSMUSG00000054008.10|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm39_v1_chr17_-_34834938_34834952	0.0520291373696389	Sox6_Sox9	ENSMUST00000097345.10|Egfl8|ENSMUSG00000015467.15|EGF-like domain 8	ENSMUST00000015611.14|Egfl8|ENSMUSG00000015467.15|EGF-like domain 8
mm39_v1_chr1_+_39940043_39940123	0.05200330752402833	Sox6_Sox9	ENSMUST00000168431.7|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000163854.9|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr5_+_142946098_142946131	0.051545208543403026	Sox6_Sox9	ENSMUST00000031565.15|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1	ENSMUST00000198017.5|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1
mm39_v1_chr2_+_112114906_112114956	0.0514979731002231	Sox6_Sox9	ENSMUST00000053666.8|Slc12a6|ENSMUSG00000027130.16|solute carrier family 12, member 6
mm39_v1_chr1_-_93029576_93029673	0.05029788516550541	Sox6_Sox9	ENSMUST00000190723.7|Kif1a|ENSMUSG00000014602.16|kinesin family member 1A
mm39_v1_chr6_+_122490534_122490542	0.05014667867916936	Sox6_Sox9	ENSMUST00000032210.14|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5	ENSMUST00000148517.8|Mfap5|ENSMUSG00000030116.15|microfibrillar associated protein 5
mm39_v1_chr5_+_138170259_138170283	0.04973021846786773	Sox6_Sox9	ENSMUST00000019662.11|Ap4m1|ENSMUSG00000019518.12|adaptor-related protein complex AP-4, mu 1	ENSMUST00000151318.8|Ap4m1|ENSMUSG00000019518.12|adaptor-related protein complex AP-4, mu 1
mm39_v1_chr12_+_52746158_52746186	0.049103887641767686	Sox6_Sox9	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr17_+_48717007_48717134	0.04862418685413906	Sox6_Sox9	ENSMUST00000167180.8|Oard1|ENSMUSG00000040771.15|O-acyl-ADP-ribose deacylase 1	ENSMUST00000046651.7|Oard1|ENSMUSG00000040771.15|O-acyl-ADP-ribose deacylase 1	ENSMUST00000233426.2|Oard1|ENSMUSG00000040771.15|O-acyl-ADP-ribose deacylase 1
mm39_v1_chr4_-_135601098_135601182	0.04848798945708789	Sox6_Sox9	ENSMUST00000030436.12|Pnrc2|ENSMUSG00000028675.13|proline-rich nuclear receptor coactivator 2
mm39_v1_chr11_+_78084203_78084250	0.04798579637092152	Sox6_Sox9	ENSMUST00000078099.4|Proca1|ENSMUSG00000044122.16|protein interacting with cyclin A1
mm39_v1_chr17_-_24199523_24199560	0.045561853626070015	Sox6_Sox9	ENSMUST00000234765.2|Prss30|ENSMUSG00000024124.11|protease, serine 30
mm39_v1_chr5_-_123859153_123859175	0.04501205924151849	Sox6_Sox9	ENSMUST00000196282.5|Zcchc8|ENSMUSG00000029427.12|zinc finger, CCHC domain containing 8
mm39_v1_chr15_-_73294923_73295028	0.04495556384638434	Sox6_Sox9	ENSMUST00000226848.2|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000226466.2|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000226988.3|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2
mm39_v1_chr10_-_130230201_130230201	0.04472736239839916	Sox6_Sox9	ENSMUST00000094502.6|Vmn2r84|ENSMUSG00000070601.6|vomeronasal 2, receptor 84	ENSMUST00000233146.2|Vmn2r84|ENSMUSG00000070601.6|vomeronasal 2, receptor 84
mm39_v1_chr2_+_4564553_4564621	0.0433779003987769	Sox6_Sox9	ENSMUST00000176828.8|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr11_-_77616103_77616120	0.043373025160935046	Sox6_Sox9	ENSMUST00000078623.5|Cryba1|ENSMUSG00000000724.11|crystallin, beta A1
mm39_v1_chr18_+_37622518_37622518	0.042717282538226854	Sox6_Sox9	ENSMUST00000055949.4|Pcdhb18|ENSMUSG00000048347.6|protocadherin beta 18
mm39_v1_chr9_-_32452885_32452898	0.04169719019574991	Sox6_Sox9	ENSMUST00000016231.14|Fli1|ENSMUSG00000016087.14|Friend leukemia integration 1
mm39_v1_chr10_-_117212826_117212858	0.041311138876760335	Sox6_Sox9	ENSMUST00000177145.8|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6	ENSMUST00000176670.8|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6
mm39_v1_chr11_-_5331734_5331745	0.041237257037718224	Sox6_Sox9	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr7_+_121818692_121818727	0.04050385256490217	Sox6_Sox9	ENSMUST00000033152.5|Chp2|ENSMUSG00000030865.5|calcineurin-like EF hand protein 2
mm39_v1_chr19_+_47568041_47568164	0.03925213968691384	Sox6_Sox9	ENSMUST00000026043.12|Slk|ENSMUSG00000025060.16|STE20-like kinase
mm39_v1_chr17_-_90395771_90395828	0.03797694093658713	Sox6_Sox9	ENSMUST00000197268.5|Nrxn1|ENSMUSG00000024109.19|neurexin I	ENSMUST00000173917.8|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr12_+_31315270_31315321	0.03787934811888343	Sox6_Sox9	ENSMUST00000002979.16|Lamb1|ENSMUSG00000002900.18|laminin B1	ENSMUST00000239496.2|Lamb1|ENSMUSG00000002900.18|laminin B1	ENSMUST00000170495.3|Lamb1|ENSMUSG00000002900.18|laminin B1
mm39_v1_chr1_+_153776323_153776352	0.03785948442941813	Sox6_Sox9	ENSMUST00000140685.4|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)	ENSMUST00000139476.8|Glul|ENSMUSG00000026473.17|glutamate-ammonia ligase (glutamine synthetase)
mm39_v1_chr17_+_25407352_25407392	0.037815007730813435	Sox6_Sox9	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr12_-_113625906_113625929	0.037681718166525775	Sox6_Sox9	ENSMUST00000103448.3|Ighv5-9|ENSMUSG00000095285.3|immunoglobulin heavy variable 5-9
mm39_v1_chr11_+_11635908_11635949	0.036971403235253116	Sox6_Sox9	ENSMUST00000065433.12|Ikzf1|ENSMUSG00000018654.18|IKAROS family zinc finger 1
mm39_v1_chr17_-_34834745_34834784	0.03668993911374197	Sox6_Sox9	ENSMUST00000168353.4|Egfl8|ENSMUSG00000015467.15|EGF-like domain 8
mm39_v1_chr7_+_80510658_80510722	0.03571290398937714	Sox6_Sox9	ENSMUST00000132163.8|Zscan2|ENSMUSG00000038797.14|zinc finger and SCAN domain containing 2	ENSMUST00000205361.2|Zscan2|ENSMUSG00000038797.14|zinc finger and SCAN domain containing 2	ENSMUST00000147125.2|Zscan2|ENSMUSG00000038797.14|zinc finger and SCAN domain containing 2
mm39_v1_chr11_-_78948432_78948453	0.035381762819068845	Sox6_Sox9	ENSMUST00000129463.2|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1
mm39_v1_chr14_+_26359390_26359502	0.03438428037175226	Sox6_Sox9	ENSMUST00000112318.10|Arf4|ENSMUSG00000021877.13|ADP-ribosylation factor 4
mm39_v1_chr17_+_38032699_38032699	0.0343612156712362	Sox6_Sox9	ENSMUST00000207771.3|Olfr120|ENSMUSG00000063994.6|olfactory receptor 120
mm39_v1_chr4_+_122889407_122889445	0.03403752898380412	Sox6_Sox9	ENSMUST00000144998.2|Mycl|ENSMUSG00000028654.14|v-myc avian myelocytomatosis viral oncogene lung carcinoma derived
mm39_v1_chr16_+_16888084_16888102	0.03384099747452229	Sox6_Sox9	ENSMUST00000231514.2|Ypel1|ENSMUSG00000022773.20|yippee like 1
mm39_v1_chr15_-_79138929_79138964	0.03367425266182809	Sox6_Sox9	ENSMUST00000039752.4|Slc16a8|ENSMUSG00000032988.5|solute carrier family 16 (monocarboxylic acid transporters), member 8
mm39_v1_chr1_+_180978491_180978549	0.03327042844267934	Sox6_Sox9	ENSMUST00000134115.8|Cnih4|ENSMUSG00000062169.14|cornichon family AMPA receptor auxiliary protein 4	ENSMUST00000111059.2|Cnih4|ENSMUSG00000062169.14|cornichon family AMPA receptor auxiliary protein 4
mm39_v1_chr18_+_37880027_37880084	0.03307188795994155	Sox6_Sox9	ENSMUST00000193404.2|Pcdhga10|ENSMUSG00000102222.2|protocadherin gamma subfamily A, 10
mm39_v1_chr16_+_31482745_31482857	0.03303392125596717	Sox6_Sox9	ENSMUST00000100001.10|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1	ENSMUST00000064477.14|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1
mm39_v1_chr15_+_75468473_75468492	0.03303390103856043	Sox6_Sox9	ENSMUST00000189944.7|Gpihbp1|ENSMUSG00000022579.11|GPI-anchored HDL-binding protein 1	ENSMUST00000023243.11|Gpihbp1|ENSMUSG00000022579.11|GPI-anchored HDL-binding protein 1
mm39_v1_chr4_+_114914607_114914635	0.03265045302132992	Sox6_Sox9	ENSMUST00000136946.8|Tal1|ENSMUSG00000028717.13|T cell acute lymphocytic leukemia 1
mm39_v1_chr17_-_68311073_68311135	0.0321707128288029	Sox6_Sox9	ENSMUST00000024840.12|Arhgap28|ENSMUSG00000024043.14|Rho GTPase activating protein 28
mm39_v1_chr5_+_95665216_95665216	0.03209897065985199	Sox6_Sox9	ENSMUST00000200932.4|Gm3286|ENSMUSG00000079423.7|predicted gene 3286
mm39_v1_chr9_+_100956734_100956815	0.031928388500813344	Sox6_Sox9	ENSMUST00000085177.5|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chr2_+_6327431_6327478	0.03192468661428415	Sox6_Sox9	ENSMUST00000114937.8|Usp6nl|ENSMUSG00000039046.16|USP6 N-terminal like
mm39_v1_chr6_+_17463748_17463808	0.03132323347356951	Sox6_Sox9	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr11_-_31621727_31621856	0.03130797610261517	Sox6_Sox9	ENSMUST00000109415.2|Bod1|ENSMUSG00000044502.17|biorientation of chromosomes in cell division 1
mm39_v1_chr1_-_119765068_119765134	0.030968496277619564	Sox6_Sox9	ENSMUST00000163435.8|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr3_-_116601700_116601803	0.03073817951759275	Sox6_Sox9	ENSMUST00000159742.8|Agl|ENSMUSG00000033400.15|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm39_v1_chr16_-_76169902_76169991	0.030520190560849314	Sox6_Sox9	ENSMUST00000054178.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr15_-_102630496_102630572	0.030457743265556843	Sox6_Sox9	ENSMUST00000171838.2|Calcoco1|ENSMUSG00000023055.11|calcium binding and coiled coil domain 1
mm39_v1_chr5_-_24935633_24935725	0.03010340121328023	Sox6_Sox9	ENSMUST00000068693.12|Wdr86|ENSMUSG00000055235.12|WD repeat domain 86
mm39_v1_chr2_+_3115250_3115267	0.029275117472229422	Sox6_Sox9	ENSMUST00000072955.12|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr15_+_59520199_59520217	0.028468246393225746	Sox6_Sox9	ENSMUST00000067543.8|Trib1|ENSMUSG00000032501.10|tribbles pseudokinase 1
mm39_v1_chr19_-_24454720_24454854	0.0283827260497995	Sox6_Sox9	ENSMUST00000099556.2|Fam122a|ENSMUSG00000074922.2|family with sequence similarity 122, member A
mm39_v1_chr10_-_30531832_30531863	0.02834567186853671	Sox6_Sox9	ENSMUST00000217138.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000217644.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000216172.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr17_+_55752485_55752551	0.028105034282561645	Sox6_Sox9	ENSMUST00000025000.4|St6gal2|ENSMUSG00000024172.11|beta galactoside alpha 2,6 sialyltransferase 2
mm39_v1_chr2_-_20973337_20973436	0.026827097172981654	Sox6_Sox9	ENSMUST00000141298.9|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21	ENSMUST00000125783.3|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21
mm39_v1_chr7_-_127474806_127474851	0.02502746561433013	Sox6_Sox9	ENSMUST00000106261.8|Zfp668|ENSMUSG00000049728.15|zinc finger protein 668	ENSMUST00000144721.2|Zfp668|ENSMUSG00000049728.15|zinc finger protein 668
mm39_v1_chr1_+_153541020_153541071	0.023922626947431393	Sox6_Sox9	ENSMUST00000152114.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8	ENSMUST00000111812.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr4_+_114914880_114915008	0.02357379108053392	Sox6_Sox9	ENSMUST00000161601.8|Tal1|ENSMUSG00000028717.13|T cell acute lymphocytic leukemia 1
mm39_v1_chr3_-_116601451_116601516	0.02351558250817629	Sox6_Sox9	ENSMUST00000159670.3|Agl|ENSMUSG00000033400.15|amylo-1,6-glucosidase, 4-alpha-glucanotransferase
mm39_v1_chr5_+_14564932_14565007	0.023227052648965397	Sox6_Sox9	ENSMUST00000182407.8|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)	ENSMUST00000030691.17|Pclo|ENSMUSG00000061601.16|piccolo (presynaptic cytomatrix protein)
mm39_v1_chr12_-_40495753_40495901	0.023137749315293683	Sox6_Sox9	ENSMUST00000069692.10|Zfp277|ENSMUSG00000055917.16|zinc finger protein 277	ENSMUST00000069637.15|Zfp277|ENSMUSG00000055917.16|zinc finger protein 277
mm39_v1_chr18_+_37875135_37875186	0.02216451564990286	Sox6_Sox9	ENSMUST00000003599.9|Pcdhgb6|ENSMUSG00000103088.2|protocadherin gamma subfamily B, 6
mm39_v1_chr9_+_54771064_54771085	0.021916996689095875	Sox6_Sox9	ENSMUST00000034843.9|Ireb2|ENSMUSG00000032293.9|iron responsive element binding protein 2
mm39_v1_chr15_-_73295029_73295068	0.021850903141971557	Sox6_Sox9	ENSMUST00000239146.2|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000110036.11|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2	ENSMUST00000228180.3|Ptk2|ENSMUSG00000022607.19|PTK2 protein tyrosine kinase 2
mm39_v1_chr18_+_65022035_65022105	0.021554729988786086	Sox6_Sox9	ENSMUST00000224385.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000163516.9|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr10_+_28544356_28544400	0.02053165082616587	Sox6_Sox9	ENSMUST00000060409.13|Themis|ENSMUSG00000049109.16|thymocyte selection associated	ENSMUST00000056097.11|Themis|ENSMUSG00000049109.16|thymocyte selection associated	ENSMUST00000105516.9|Themis|ENSMUSG00000049109.16|thymocyte selection associated
mm39_v1_chr12_-_113700190_113700279	0.0198491523353507	Sox6_Sox9	ENSMUST00000103452.3|Ighv5-9-1|ENSMUSG00000095210.3|immunoglobulin heavy variable 5-9-1	ENSMUST00000192264.2|Ighv5-9-1|ENSMUSG00000095210.3|immunoglobulin heavy variable 5-9-1
mm39_v1_chr6_-_23839136_23839266	0.01969408941779725	Sox6_Sox9	ENSMUST00000166458.9|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2	ENSMUST00000142913.9|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2	ENSMUST00000069074.14|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2	ENSMUST00000115361.9|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2	ENSMUST00000018122.14|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2	ENSMUST00000115356.3|Cadps2|ENSMUSG00000017978.19|Ca2+-dependent activator protein for secretion 2
mm39_v1_chr16_-_89940652_89940662	0.01923134793623166	Sox6_Sox9	ENSMUST00000114124.9|Tiam1|ENSMUSG00000002489.17|T cell lymphoma invasion and metastasis 1
mm39_v1_chr10_+_42736345_42736373	0.0189706384039373	Sox6_Sox9	ENSMUST00000063063.14|Scml4|ENSMUSG00000044770.15|Scm polycomb group protein like 4
mm39_v1_chr4_+_130390663_130390723	0.018949925256974743	Sox6_Sox9	ENSMUST00000105992.9|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1	ENSMUST00000105991.9|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1	ENSMUST00000143277.8|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1	ENSMUST00000097864.9|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1	ENSMUST00000097862.3|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1
mm39_v1_chr1_-_119765343_119765403	0.018730328751316173	Sox6_Sox9	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr10_+_111919250_111919276	0.01843142707641412	Sox6_Sox9	ENSMUST00000148897.8|Glipr1l2|ENSMUSG00000020214.11|GLI pathogenesis-related 1 like 2	ENSMUST00000020434.4|Glipr1l2|ENSMUSG00000020214.11|GLI pathogenesis-related 1 like 2
mm39_v1_chr17_-_32583402_32583462	0.01816443951825225	Sox6_Sox9	ENSMUST00000169488.10|Wiz|ENSMUSG00000024050.19|widely-interspaced zinc finger motifs
mm39_v1_chr2_+_180240015_180240044	0.01792584857080305	Sox6_Sox9	ENSMUST00000103059.2|Col9a3|ENSMUSG00000027570.16|collagen, type IX, alpha 3
mm39_v1_chr9_+_74883377_74883460	0.016709714973774704	Sox6_Sox9	ENSMUST00000081746.7|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr2_-_151815759_151815886	0.016168728483866315	Sox6_Sox9	ENSMUST00000109865.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A	ENSMUST00000109864.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A
mm39_v1_chr10_+_78848306_78848306	0.016143215865439473	Sox6_Sox9	ENSMUST00000216030.2|Olfr1351|ENSMUSG00000063216.4|olfactory receptor 1351
mm39_v1_chr1_+_24717968_24718018	0.016050622365048436	Sox6_Sox9	ENSMUST00000095062.10|Lmbrd1|ENSMUSG00000073725.9|LMBR1 domain containing 1
mm39_v1_chr6_+_53550285_53550334	0.015491369432613429	Sox6_Sox9	ENSMUST00000205120.3|Creb5|ENSMUSG00000053007.10|cAMP responsive element binding protein 5
mm39_v1_chr4_-_141327253_141327343	0.01488284362017573	Sox6_Sox9	ENSMUST00000147785.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1
mm39_v1_chr4_+_43406435_43406615	0.014580110326370504	Sox6_Sox9	ENSMUST00000098106.9|Rusc2|ENSMUSG00000035969.16|RUN and SH3 domain containing 2	ENSMUST00000139198.2|Rusc2|ENSMUSG00000035969.16|RUN and SH3 domain containing 2
mm39_v1_chr4_+_42158092_42158092	0.0144519866227976	Sox6_Sox9	ENSMUST00000098122.3|Gm13306|ENSMUSG00000073877.11|predicted gene 13306
mm39_v1_chr4_+_42655251_42655251	0.014239721567185379	Sox6_Sox9	ENSMUST00000177785.3|Ccl27b|ENSMUSG00000096826.3|chemokine (C-C motif) ligand 27b
mm39_v1_chr10_+_101994719_101994750	0.013982518208703791	Sox6_Sox9	ENSMUST00000138522.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000163753.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000138016.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr15_-_76259126_76259141	0.013489094904344828	Sox6_Sox9	ENSMUST00000071119.8|Tssk5|ENSMUSG00000060794.9|testis-specific serine kinase 5
mm39_v1_chr9_-_88364593_88364640	0.013464949857696093	Sox6_Sox9	ENSMUST00000173801.8|Syncrip|ENSMUSG00000032423.13|synaptotagmin binding, cytoplasmic RNA interacting protein	ENSMUST00000069221.12|Syncrip|ENSMUSG00000032423.13|synaptotagmin binding, cytoplasmic RNA interacting protein	ENSMUST00000172508.2|Syncrip|ENSMUSG00000032423.13|synaptotagmin binding, cytoplasmic RNA interacting protein
mm39_v1_chr11_+_76108434_76108462	0.012919408951929511	Sox6_Sox9	ENSMUST00000040806.5|Dbil5|ENSMUSG00000038057.5|diazepam binding inhibitor-like 5
mm39_v1_chr18_+_37884653_37884705	0.012749166077884686	Sox6_Sox9	ENSMUST00000194928.2|Pcdhgb7|ENSMUSG00000104063.2|protocadherin gamma subfamily B, 7
mm39_v1_chr8_+_26008799_26008817	0.012646318953867655	Sox6_Sox9	ENSMUST00000119398.10|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000117179.9|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1
mm39_v1_chr19_-_18978463_18978483	0.012513064472098726	Sox6_Sox9	ENSMUST00000040153.15|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta	ENSMUST00000112828.8|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta
mm39_v1_chr17_-_46581697_46581737	0.012383874996958715	Sox6_Sox9	ENSMUST00000224055.2|Tjap1|ENSMUSG00000012296.17|tight junction associated protein 1
mm39_v1_chr7_-_129867967_129867993	0.012218177874279092	Sox6_Sox9	ENSMUST00000117872.8|Fgfr2|ENSMUSG00000030849.19|fibroblast growth factor receptor 2	ENSMUST00000120187.9|Fgfr2|ENSMUSG00000030849.19|fibroblast growth factor receptor 2
mm39_v1_chr11_+_93934940_93934947	0.011976081772420617	Sox6_Sox9	ENSMUST00000132079.8|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr2_-_104647041_104647138	0.010793024215529315	Sox6_Sox9	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr19_-_46950737_46950756	0.010596724774268039	Sox6_Sox9	ENSMUST00000168536.9|Nt5c2|ENSMUSG00000025041.18|5'-nucleotidase, cytosolic II	ENSMUST00000236783.2|Nt5c2|ENSMUSG00000025041.18|5'-nucleotidase, cytosolic II	ENSMUST00000238106.2|Nt5c2|ENSMUSG00000025041.18|5'-nucleotidase, cytosolic II
mm39_v1_chr2_-_6889685_6889782	0.010351365713464575	Sox6_Sox9	ENSMUST00000183091.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000182851.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr2_-_6327884_6327905	0.009361493980430846	Sox6_Sox9	ENSMUST00000238876.2|1700014B07Rik|ENSMUSG00000118578.2|RIKEN cDNA 1700014B07 gene
mm39_v1_chr17_-_34337446_34337475	0.00850934990434198	Sox6_Sox9	ENSMUST00000095347.13|Brd2|ENSMUSG00000024335.21|bromodomain containing 2
mm39_v1_chr11_-_98220466_98220482	0.008065225357535203	Sox6_Sox9	ENSMUST00000041685.7|Neurod2|ENSMUSG00000038255.7|neurogenic differentiation 2
mm39_v1_chr15_+_75468494_75468511	0.007643774857389052	Sox6_Sox9	ENSMUST00000189874.2|Gpihbp1|ENSMUSG00000022579.11|GPI-anchored HDL-binding protein 1
mm39_v1_chr17_+_36176948_36176977	0.007250535530115596	Sox6_Sox9	ENSMUST00000122899.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18
mm39_v1_chr6_-_122317484_122317520	0.006829981103763987	Sox6_Sox9	ENSMUST00000112600.9|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr7_+_43079512_43079538	0.0065243975455625955	Sox6_Sox9	ENSMUST00000004732.7|Lim2|ENSMUSG00000118560.2|lens intrinsic membrane protein 2
mm39_v1_chr8_-_86107593_86107613	0.006104254888808794	Sox6_Sox9	ENSMUST00000122452.8|Mylk3|ENSMUSG00000031698.15|myosin light chain kinase 3
mm39_v1_chr1_-_167112170_167112219	0.005982077503672539	Sox6_Sox9	ENSMUST00000192269.3|Uck2|ENSMUSG00000026558.14|uridine-cytidine kinase 2
mm39_v1_chr7_+_78922947_78922973	0.005692059902266609	Sox6_Sox9	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr1_-_16590244_16590336	0.00568416532501612	Sox6_Sox9	ENSMUST00000144138.4|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000145092.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000131257.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000153966.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000162435.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr16_-_58581603_58581603	0.005642951059419988	Sox6_Sox9	ENSMUST00000095991.3|Olfr172|ENSMUSG00000071510.4|olfactory receptor 172
mm39_v1_chr10_+_101994841_101994940	0.005567597304920114	Sox6_Sox9	ENSMUST00000020039.13|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chr6_+_15184630_15184661	0.005440603680090752	Sox6_Sox9	ENSMUST00000115470.3|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr12_-_113760187_113760187	0.005257764006670273	Sox6_Sox9	ENSMUST00000192911.2|Ighv2-6-8|ENSMUSG00000076646.4|immunoglobulin heavy variable 2-6-8	ENSMUST00000103455.3|Ighv2-6-8|ENSMUSG00000076646.4|immunoglobulin heavy variable 2-6-8
mm39_v1_chr19_-_32080496_32080554	0.005223201706866844	Sox6_Sox9	ENSMUST00000235213.2|Asah2|ENSMUSG00000024887.11|N-acylsphingosine amidohydrolase 2	ENSMUST00000236504.2|Asah2|ENSMUSG00000024887.11|N-acylsphingosine amidohydrolase 2
mm39_v1_chr5_-_105491795_105491795	0.0050894089189190035	Sox6_Sox9	ENSMUST00000171587.2|Gbp11|ENSMUSG00000092021.9|guanylate binding protein 11
mm39_v1_chr7_-_19595221_19595224	0.005071556508074835	Sox6_Sox9	ENSMUST00000014830.8|Ceacam16|ENSMUSG00000014686.9|carcinoembryonic antigen-related cell adhesion molecule 16
mm39_v1_chr15_-_75922625_75922643	0.005051212425008761	Sox6_Sox9	ENSMUST00000145830.8|Scrib|ENSMUSG00000022568.18|scribbled planar cell polarity	ENSMUST00000148211.3|Scrib|ENSMUSG00000022568.18|scribbled planar cell polarity
mm39_v1_chr19_-_47680528_47680535	0.004805744936450481	Sox6_Sox9	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr12_-_113666198_113666282	0.004115855131959926	Sox6_Sox9	ENSMUST00000103450.4|Ighv5-12|ENSMUSG00000095429.2|immunoglobulin heavy variable 5-12
mm39_v1_chr17_-_24863956_24863969	0.004077315363762006	Sox6_Sox9	ENSMUST00000019684.13|Slc9a3r2|ENSMUSG00000002504.16|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm39_v1_chr5_-_109899463_109899547	0.003839466952821241	Sox6_Sox9	ENSMUST00000112547.8|4930522L14Rik|ENSMUSG00000072762.10|RIKEN cDNA 4930522L14 gene
mm39_v1_chr1_-_16589425_16589494	0.0037911579047555854	Sox6_Sox9	ENSMUST00000159558.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000054668.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000162627.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000162007.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000128957.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000115359.10|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000151888.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr11_-_62283431_62283485	0.0036774123156427365	Sox6_Sox9	ENSMUST00000151498.9|Ncor1|ENSMUSG00000018501.18|nuclear receptor co-repressor 1
mm39_v1_chr6_+_90223282_90223282	0.003632260403918037	Sox6_Sox9	ENSMUST00000226921.2|Vmn1r54|ENSMUSG00000047203.4|vomeronasal 1 receptor 54
mm39_v1_chr9_-_106666329_106666408	0.003581267336324304	Sox6_Sox9	ENSMUST00000046502.7|Rad54l2|ENSMUSG00000040661.7|RAD54 like 2 (S. cerevisiae)
mm39_v1_chr9_+_40059408_40059441	0.003525062027837291	Sox6_Sox9	ENSMUST00000046333.9|Tmem225|ENSMUSG00000040541.9|transmembrane protein 225	ENSMUST00000238613.2|Tmem225|ENSMUSG00000040541.9|transmembrane protein 225
mm39_v1_chr18_+_82572595_82572705	0.003439663773286255	Sox6_Sox9	ENSMUST00000152071.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000142850.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000080658.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000133193.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000123251.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000153478.9|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000075372.13|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000102812.12|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000062446.15|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000114674.11|Mbp|ENSMUSG00000041607.18|myelin basic protein	ENSMUST00000132369.3|Mbp|ENSMUSG00000041607.18|myelin basic protein
mm39_v1_chr4_-_88640691_88640722	0.0032099469388854724	Sox6_Sox9	ENSMUST00000094993.3|Klhl9|ENSMUSG00000070923.5|kelch-like 9
mm39_v1_chr13_-_14237958_14237975	0.0031370368833786503	Sox6_Sox9	ENSMUST00000223174.2|Ggps1|ENSMUSG00000021302.11|geranylgeranyl diphosphate synthase 1
mm39_v1_chr2_+_26205525_26205614	0.0029961424146785092	Sox6_Sox9	ENSMUST00000066936.9|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)	ENSMUST00000078616.12|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chr12_+_51395154_51395190	0.0028785348760135953	Sox6_Sox9	ENSMUST00000121521.2|G2e3|ENSMUSG00000035293.14|G2/M-phase specific E3 ubiquitin ligase
mm39_v1_chr18_+_65209103_65209132	0.002585603550037873	Sox6_Sox9	ENSMUST00000236764.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr18_+_65021974_65022000	0.0021461057347022575	Sox6_Sox9	ENSMUST00000225261.3|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr17_-_10501816_10501862	0.002123602479337569	Sox6_Sox9	ENSMUST00000233684.2|Qk|ENSMUSG00000062078.16|quaking, KH domain containing RNA binding
mm39_v1_chr7_-_127214372_127214391	0.002120281703558009	Sox6_Sox9	ENSMUST00000128731.8|Zfp629|ENSMUSG00000045639.15|zinc finger protein 629	ENSMUST00000122066.8|Zfp629|ENSMUSG00000045639.15|zinc finger protein 629
mm39_v1_chr19_-_20931566_20931652	0.001941352334694687	Sox6_Sox9	ENSMUST00000039500.4|Tmc1|ENSMUSG00000024749.10|transmembrane channel-like gene family 1
mm39_v1_chr5_-_105198913_105198913	0.0017013115181074895	Sox6_Sox9	ENSMUST00000112718.5|Gbp8|ENSMUSG00000034438.17|guanylate-binding protein 8
mm39_v1_chr1_-_64995891_64995942	0.0015932124780568444	Sox6_Sox9	ENSMUST00000123225.2|Plekhm3|ENSMUSG00000051344.14|pleckstrin homology domain containing, family M, member 3
mm39_v1_chr18_+_37630044_37630044	0.0014179098788976209	Sox6_Sox9	ENSMUST00000059571.7|Pcdhb19|ENSMUSG00000043313.7|protocadherin beta 19
mm39_v1_chr7_+_5018453_5018509	0.0010424540252193409	Sox6_Sox9	ENSMUST00000086349.5|Zfp524|ENSMUSG00000051184.8|zinc finger protein 524	ENSMUST00000207050.2|Gm44973|ENSMUSG00000109129.2|predicted gene 44973
mm39_v1_chr3_+_63202940_63203019	0.000820176193474047	Sox6_Sox9	ENSMUST00000194150.6|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr12_+_108389075_108389141	0.0005032262138084394	Sox6_Sox9	ENSMUST00000109860.8|Eml1|ENSMUSG00000058070.15|echinoderm microtubule associated protein like 1
