mm39_v1_chr12_-_73093953_73093953	0.029004490008705253	UAAGACG	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr13_-_111626562_111626645	0.021269541659447003	UAAGACG	ENSMUST00000091236.11|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1	ENSMUST00000047627.14|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1
mm39_v1_chr3_+_41510160_41510195	0.01679364949881647	UAAGACG	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr10_+_39245746_39245808	0.013497725392577235	UAAGACG	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr17_+_6869070_6869070	0.012744349240653012	UAAGACG	ENSMUST00000092966.5|Dynlt1c|ENSMUSG00000000579.15|dynein light chain Tctex-type 1C
mm39_v1_chr14_-_31299275_31299340	0.012341918257053185	UAAGACG	ENSMUST00000112027.9|Colq|ENSMUSG00000057606.15|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm39_v1_chr12_-_107969853_107969872	0.010606247237275209	UAAGACG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr17_+_29312737_29312755	0.010405497530222914	UAAGACG	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
mm39_v1_chr9_-_78389006_78389033	0.009722555181235923	UAAGACG	ENSMUST00000042235.15|Eef1a1|ENSMUSG00000037742.15|eukaryotic translation elongation factor 1 alpha 1
mm39_v1_chr19_-_32717166_32717194	0.009118389328477822	UAAGACG	ENSMUST00000235142.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000070210.6|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000236011.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1
mm39_v1_chr14_-_52341472_52341485	0.008146163743874717	UAAGACG	ENSMUST00000111610.12|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C	ENSMUST00000164655.2|Hnrnpc|ENSMUSG00000060373.16|heterogeneous nuclear ribonucleoprotein C
mm39_v1_chr16_-_15412371_15412396	0.007898549954291963	UAAGACG	ENSMUST00000115776.2|Ube2v2|ENSMUSG00000022674.16|ubiquitin-conjugating enzyme E2 variant 2	ENSMUST00000115777.10|Ube2v2|ENSMUSG00000022674.16|ubiquitin-conjugating enzyme E2 variant 2
mm39_v1_chr1_-_97589675_97589799	0.007852265347872372	UAAGACG	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr11_+_44409775_44409827	0.007396615908469413	UAAGACG	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr3_+_137570334_137570374	0.0073899407475200764	UAAGACG	ENSMUST00000174561.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1	ENSMUST00000173790.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1
mm39_v1_chr13_-_56283331_56283444	0.007313990258854316	UAAGACG	ENSMUST00000045788.9|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone	ENSMUST00000016081.13|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone
mm39_v1_chr17_-_52139693_52139706	0.006632005941953242	UAAGACG	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr8_-_8740471_8740539	0.006308400764934971	UAAGACG	ENSMUST00000048545.10|Arglu1|ENSMUSG00000040459.12|arginine and glutamate rich 1
mm39_v1_chr7_-_110682204_110682244	0.0060303731995894495	UAAGACG	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr12_-_13299197_13299224	0.005921319255129063	UAAGACG	ENSMUST00000071103.10|Ddx1|ENSMUSG00000037149.11|DEAD box helicase 1
mm39_v1_chr11_+_98798627_98798692	0.005853827983411978	UAAGACG	ENSMUST00000092706.13|Cdc6|ENSMUSG00000017499.16|cell division cycle 6
mm39_v1_chr2_+_121859025_121859137	0.005514165941903954	UAAGACG	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr17_-_6367692_6367775	0.005322890157653542	UAAGACG	ENSMUST00000232499.2|Dynlt1a|ENSMUSG00000092074.3|dynein light chain Tctex-type 1A	ENSMUST00000169415.3|Dynlt1a|ENSMUSG00000092074.3|dynein light chain Tctex-type 1A
mm39_v1_chr10_-_118705029_118705091	0.004799601609420899	UAAGACG	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr17_-_6923299_6923299	0.00471695954091016	UAAGACG	ENSMUST00000179554.3|Dynlt1f|ENSMUSG00000095677.3|dynein light chain Tctex-type 1F
mm39_v1_chr13_-_43634695_43634823	0.004683471122108428	UAAGACG	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr4_-_41314877_41314889	0.0044618123487869315	UAAGACG	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chrX_+_98179725_98179744	0.004207189779654109	UAAGACG	ENSMUST00000052839.7|Efnb1|ENSMUSG00000031217.9|ephrin B1
mm39_v1_chr12_+_32428691_32428709	0.004136644308679399	UAAGACG	ENSMUST00000172332.4|Ccdc71l|ENSMUSG00000090946.4|coiled-coil domain containing 71 like
mm39_v1_chr2_+_160487801_160487816	0.003969775270728336	UAAGACG	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr2_-_6889783_6889807	0.003955445454223535	UAAGACG	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr4_+_106173384_106173439	0.003770092843232008	UAAGACG	ENSMUST00000165709.8|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24	ENSMUST00000094933.5|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24
mm39_v1_chr16_+_22926504_22926511	0.003574456390238765	UAAGACG	ENSMUST00000187168.7|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000232287.2|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000077605.12|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2
mm39_v1_chr5_+_129970882_129970968	0.0035173423211349946	UAAGACG	ENSMUST00000201855.2|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1	ENSMUST00000073945.6|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1
mm39_v1_chr16_+_17051423_17051528	0.003201472908276218	UAAGACG	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr8_-_94739469_94739479	0.003051945636395629	UAAGACG	ENSMUST00000053766.14|Amfr|ENSMUSG00000031751.15|autocrine motility factor receptor
mm39_v1_chr7_+_130179063_130179214	0.0029765096883959184	UAAGACG	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr11_+_94218810_94218858	0.0029476483840710378	UAAGACG	ENSMUST00000107818.9|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40	ENSMUST00000051221.13|Ankrd40|ENSMUSG00000020864.14|ankyrin repeat domain 40
mm39_v1_chr4_-_56865134_56865208	0.0028545262723662056	UAAGACG	ENSMUST00000107612.3|Ctnnal1|ENSMUSG00000038816.15|catenin (cadherin associated protein), alpha-like 1	ENSMUST00000045142.15|Ctnnal1|ENSMUSG00000038816.15|catenin (cadherin associated protein), alpha-like 1
mm39_v1_chr15_+_58287305_58287361	0.0027375457061701324	UAAGACG	ENSMUST00000037270.5|Fam91a1|ENSMUSG00000037119.5|family with sequence similarity 91, member A1
mm39_v1_chr9_+_121946321_121946401	0.0026043494898828827	UAAGACG	ENSMUST00000119215.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000146832.8|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000118886.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000120173.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000139181.2|Snrk|ENSMUSG00000038145.18|SNF related kinase
mm39_v1_chr18_-_12995681_12995771	0.002592265699984136	UAAGACG	ENSMUST00000121808.8|Osbpl1a|ENSMUSG00000044252.19|oxysterol binding protein-like 1A	ENSMUST00000118313.8|Osbpl1a|ENSMUSG00000044252.19|oxysterol binding protein-like 1A
mm39_v1_chr1_+_131755715_131755757	0.0025492784847243035	UAAGACG	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr9_-_72019109_72019191	0.002514656978531792	UAAGACG	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr17_-_63806963_63807070	0.002420091014486762	UAAGACG	ENSMUST00000024761.13|Fbxl17|ENSMUSG00000023965.14|F-box and leucine-rich repeat protein 17
mm39_v1_chr15_+_99290763_99290785	0.002309649709152203	UAAGACG	ENSMUST00000023749.15|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr4_+_137943603_137943636	0.002263452612210045	UAAGACG	ENSMUST00000105827.8|Hp1bp3|ENSMUSG00000028759.14|heterochromatin protein 1, binding protein 3
mm39_v1_chr17_+_83658354_83658453	0.0021809485613663387	UAAGACG	ENSMUST00000096766.12|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000049503.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000112363.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000234460.2|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4
mm39_v1_chr9_-_75316625_75316668	0.0021303633928870217	UAAGACG	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chr14_-_20596580_20596650	0.002114722798501459	UAAGACG	ENSMUST00000022355.11|Ppp3cb|ENSMUSG00000021816.12|protein phosphatase 3, catalytic subunit, beta isoform	ENSMUST00000161445.8|Ppp3cb|ENSMUSG00000021816.12|protein phosphatase 3, catalytic subunit, beta isoform	ENSMUST00000159027.8|Ppp3cb|ENSMUSG00000021816.12|protein phosphatase 3, catalytic subunit, beta isoform
mm39_v1_chr9_+_86349207_86349225	0.0020449167054936443	UAAGACG	ENSMUST00000190957.7|Dop1a|ENSMUSG00000034973.17|DOP1 leucine zipper like protein A
mm39_v1_chr14_+_121272950_121272990	0.0019788683112924627	UAAGACG	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr1_+_74545203_74545264	0.001968412845269078	UAAGACG	ENSMUST00000087215.7|Cnot9|ENSMUSG00000026174.10|CCR4-NOT transcription complex, subunit 9
mm39_v1_chr4_-_119151717_119151801	0.0019369093161171191	UAAGACG	ENSMUST00000079644.13|Ybx1|ENSMUSG00000028639.15|Y box protein 1
mm39_v1_chr14_-_72947422_72947467	0.0018002210222289594	UAAGACG	ENSMUST00000089017.12|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chr11_-_60111391_60111458	0.0017974706921541235	UAAGACG	ENSMUST00000020846.8|Srebf1|ENSMUSG00000020538.16|sterol regulatory element binding transcription factor 1
mm39_v1_chr2_-_37537224_37537297	0.0017793460262040069	UAAGACG	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chrX_-_163763273_163763333	0.001632465902108816	UAAGACG	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr18_+_38383297_38383340	0.001379322814400232	UAAGACG	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr6_-_100264439_100264461	0.0012372257997734209	UAAGACG	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr3_-_116217579_116217681	0.0010482175458125373	UAAGACG	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr18_+_32296126_32296249	0.0009985740964462808	UAAGACG	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr14_-_61677258_61677323	0.0007361034066775911	UAAGACG	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr4_-_126323291_126323349	0.0006467477867252144	UAAGACG	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr7_+_89053562_89053609	0.0006249054749377928	UAAGACG	ENSMUST00000058755.5|Fzd4|ENSMUSG00000049791.5|frizzled class receptor 4
mm39_v1_chr3_+_136375839_136375948	0.0005078662341219766	UAAGACG	ENSMUST00000070198.14|Ppp3ca|ENSMUSG00000028161.18|protein phosphatase 3, catalytic subunit, alpha isoform
mm39_v1_chr6_-_51446752_51446834	0.00040576810891494665	UAAGACG	ENSMUST00000204188.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000203220.3|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000114459.8|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1	ENSMUST00000090002.10|Hnrnpa2b1|ENSMUSG00000004980.17|heterogeneous nuclear ribonucleoprotein A2/B1
mm39_v1_chr1_-_9818601_9818676	0.0003619460916069086	UAAGACG	ENSMUST00000057438.7|Vcpip1|ENSMUSG00000045210.9|valosin containing protein (p97)/p47 complex interacting protein 1
mm39_v1_chr4_+_41465134_41465164	0.0003497649048603954	UAAGACG	ENSMUST00000030154.7|Nudt2|ENSMUSG00000028443.7|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm39_v1_chr4_-_110144676_110144731	0.00032767311326306603	UAAGACG	ENSMUST00000106598.8|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000102723.11|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000153906.2|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chr15_-_93173032_93173060	0.000294267940155076	UAAGACG	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr19_+_21755689_21755727	0.0002803063082949935	UAAGACG	ENSMUST00000096194.9|Cemip2|ENSMUSG00000024754.14|cell migration inducing hyaluronidase 2	ENSMUST00000025663.8|Cemip2|ENSMUSG00000024754.14|cell migration inducing hyaluronidase 2
mm39_v1_chr5_+_57876401_57876457	0.00019418048455285489	UAAGACG	ENSMUST00000094783.7|Pcdh7|ENSMUSG00000029108.15|protocadherin 7
mm39_v1_chr17_-_13211075_13211146	0.00018915049550229313	UAAGACG	ENSMUST00000159986.8|Wtap|ENSMUSG00000060475.14|Wilms tumour 1-associating protein	ENSMUST00000007007.14|Wtap|ENSMUSG00000060475.14|Wilms tumour 1-associating protein
mm39_v1_chr7_-_115637970_115637985	0.00017023058563495766	UAAGACG	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr14_-_122035225_122035272	0.00016708238936119493	UAAGACG	ENSMUST00000100299.11|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr10_-_58511476_58511534	0.0001060104979626373	UAAGACG	ENSMUST00000003312.5|Edar|ENSMUSG00000003227.5|ectodysplasin-A receptor
mm39_v1_chr14_+_69266566_69266687	8.157360309930585e-05	UAAGACG	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr6_-_145811028_145811085	6.839249817516176e-05	UAAGACG	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr2_+_74522258_74522284	5.171007242181478e-05	UAAGACG	ENSMUST00000061745.5|Hoxd10|ENSMUSG00000050368.5|homeobox D10
mm39_v1_chr6_+_38410848_38410901	3.374713579122844e-05	UAAGACG	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr6_+_77219627_77219680	2.7771702484282928e-05	UAAGACG	ENSMUST00000159616.2|Lrrtm1|ENSMUSG00000060780.3|leucine rich repeat transmembrane neuronal 1
