mm39_v1_chr16_-_10131804_10131832	0.19932333396403681	UAAUGCU	ENSMUST00000078357.5|Emp2|ENSMUSG00000022505.10|epithelial membrane protein 2
mm39_v1_chr11_-_103158190_103158298	0.19075915565508214	UAAUGCU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr19_+_5687503_5687514	0.18914287605811855	UAAUGCU	ENSMUST00000025867.6|Rela|ENSMUSG00000024927.9|v-rel reticuloendotheliosis viral oncogene homolog A (avian)
mm39_v1_chr11_-_18968979_18968990	0.17713785123187142	UAAUGCU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr10_+_79984097_79984115	0.16131183529556534	UAAUGCU	ENSMUST00000099492.10|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000042057.12|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr12_-_46865709_46865720	0.15010928464226342	UAAUGCU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr6_-_39183712_39183769	0.1484781184204674	UAAUGCU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
mm39_v1_chr14_+_58308004_58308004	0.14743461610781128	UAAUGCU	ENSMUST00000165526.9|Fgf9|ENSMUSG00000021974.16|fibroblast growth factor 9
mm39_v1_chr16_+_37909363_37909426	0.14208557992797285	UAAUGCU	ENSMUST00000023507.13|Gsk3b|ENSMUSG00000022812.15|glycogen synthase kinase 3 beta
mm39_v1_chr18_+_34354031_34354073	0.1290960279692204	UAAUGCU	ENSMUST00000115781.10|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator	ENSMUST00000079362.13|Apc|ENSMUSG00000005871.16|APC, WNT signaling pathway regulator
mm39_v1_chr15_-_50753061_50753118	0.12871011480911107	UAAUGCU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr16_+_4964849_4964973	0.12281808279142474	UAAUGCU	ENSMUST00000165810.2|Sec14l5|ENSMUSG00000091712.3|SEC14-like lipid binding 5	ENSMUST00000230616.2|Sec14l5|ENSMUSG00000091712.3|SEC14-like lipid binding 5
mm39_v1_chr4_-_66322695_66322745	0.12141069443425843	UAAUGCU	ENSMUST00000084496.3|Astn2|ENSMUSG00000028373.17|astrotactin 2
mm39_v1_chr2_-_102231208_102231314	0.12118240498894536	UAAUGCU	ENSMUST00000102573.8|Trim44|ENSMUSG00000027189.17|tripartite motif-containing 44
mm39_v1_chr5_+_32293145_32293201	0.1158458749071521	UAAUGCU	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr8_-_110464345_110464418	0.11417665836751935	UAAUGCU	ENSMUST00000212605.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000093162.4|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like	ENSMUST00000212726.2|Atxn1l|ENSMUSG00000069895.5|ataxin 1-like
mm39_v1_chr13_+_44884740_44884752	0.11386707741541033	UAAUGCU	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr11_+_95603494_95603529	0.10986567226752332	UAAUGCU	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr18_-_84607615_84607652	0.10393422149613044	UAAUGCU	ENSMUST00000125763.3|Zfp407|ENSMUSG00000048410.18|zinc finger protein 407
mm39_v1_chr19_-_7319157_7319195	0.10194263664142948	UAAUGCU	ENSMUST00000164205.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000165286.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000168324.2|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000032557.15|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr1_+_89382491_89382643	0.10101121770489106	UAAUGCU	ENSMUST00000027521.15|Agap1|ENSMUSG00000055013.17|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	ENSMUST00000190096.7|Agap1|ENSMUSG00000055013.17|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm39_v1_chr19_-_59932079_59932110	0.10099794985637507	UAAUGCU	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr3_-_103645311_103645322	0.09832233672459503	UAAUGCU	ENSMUST00000029440.10|Olfml3|ENSMUSG00000027848.13|olfactomedin-like 3
mm39_v1_chr19_+_43678109_43678133	0.0975997575714391	UAAUGCU	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr1_+_61677977_61678000	0.09653834125896252	UAAUGCU	ENSMUST00000075374.10|Pard3b|ENSMUSG00000052062.15|par-3 family cell polarity regulator beta
mm39_v1_chr9_-_70411000_70411092	0.0931539856650364	UAAUGCU	ENSMUST00000034739.12|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr1_-_64776890_64776915	0.0913565511087415	UAAUGCU	ENSMUST00000116133.4|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5	ENSMUST00000063982.7|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5
mm39_v1_chr9_+_21527462_21527473	0.09120719358594855	UAAUGCU	ENSMUST00000034707.15|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	ENSMUST00000098948.10|Smarca4|ENSMUSG00000032187.17|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm39_v1_chr19_-_14575395_14575451	0.0876947663087464	UAAUGCU	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chrX_-_107877909_107877987	0.08563297482605157	UAAUGCU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr19_+_6096606_6096692	0.08506951087764815	UAAUGCU	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr9_+_107217786_107217848	0.0845622204492921	UAAUGCU	ENSMUST00000042581.4|6430571L13Rik|ENSMUSG00000037977.7|RIKEN cDNA 6430571L13 gene
mm39_v1_chr5_-_106844685_106844707	0.0841440016603238	UAAUGCU	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr5_-_36641456_36641650	0.08013667739535582	UAAUGCU	ENSMUST00000119916.2|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B	ENSMUST00000031097.8|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B
mm39_v1_chr9_-_48747232_48747262	0.07932676723344996	UAAUGCU	ENSMUST00000093852.5|Zbtb16|ENSMUSG00000066687.6|zinc finger and BTB domain containing 16
mm39_v1_chr5_-_136596299_136596390	0.07825486411573734	UAAUGCU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr9_-_113855776_113855833	0.07770544805574897	UAAUGCU	ENSMUST00000035090.14|Fbxl2|ENSMUSG00000032507.16|F-box and leucine-rich repeat protein 2
mm39_v1_chr2_-_75534985_75535023	0.07656892978490241	UAAUGCU	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr6_+_86826470_86826577	0.07426377767103971	UAAUGCU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr5_+_64960705_64960731	0.06901987766692354	UAAUGCU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr2_+_167530835_167530894	0.06877110166787198	UAAUGCU	ENSMUST00000070642.4|Cebpb|ENSMUSG00000056501.4|CCAAT/enhancer binding protein (C/EBP), beta
mm39_v1_chr2_-_160208977_160208993	0.0684933330684979	UAAUGCU	ENSMUST00000099126.5|Mafb|ENSMUSG00000074622.5|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm39_v1_chr16_+_44979086_44979202	0.06786159553549635	UAAUGCU	ENSMUST00000023343.4|Atg3|ENSMUSG00000022663.4|autophagy related 3
mm39_v1_chr11_+_77107006_77107113	0.06757189591547846	UAAUGCU	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr11_-_5331734_5331745	0.06627783828848827	UAAUGCU	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chrX_+_47430221_47430295	0.0661573337284789	UAAUGCU	ENSMUST00000136348.8|Bcorl1|ENSMUSG00000036959.16|BCL6 co-repressor-like 1
mm39_v1_chr6_-_56774622_56774741	0.06545104978294637	UAAUGCU	ENSMUST00000114323.8|Kbtbd2|ENSMUSG00000059486.12|kelch repeat and BTB (POZ) domain containing 2
mm39_v1_chr11_+_44508137_44508169	0.06308367838492686	UAAUGCU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr4_+_135899678_135899738	0.06209996095308744	UAAUGCU	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr11_+_75623695_75623795	0.06032040416585867	UAAUGCU	ENSMUST00000067664.10|Ywhae|ENSMUSG00000020849.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm39_v1_chr11_-_86698484_86698572	0.05955349726610074	UAAUGCU	ENSMUST00000018569.14|Dhx40|ENSMUSG00000018425.19|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm39_v1_chr10_-_115087309_115087384	0.05906525002828854	UAAUGCU	ENSMUST00000020339.10|Tbc1d15|ENSMUSG00000020130.10|TBC1 domain family, member 15
mm39_v1_chr4_-_3938352_3938401	0.05830739545947574	UAAUGCU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr6_-_120015608_120015660	0.05707140980887112	UAAUGCU	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr8_+_27467330_27467382	0.05505166949175065	UAAUGCU	ENSMUST00000127097.9|Zfp703|ENSMUSG00000085795.9|zinc finger protein 703	ENSMUST00000154256.3|Zfp703|ENSMUSG00000085795.9|zinc finger protein 703
mm39_v1_chr15_+_32244947_32244982	0.05433379371094091	UAAUGCU	ENSMUST00000067458.7|Sema5a|ENSMUSG00000022231.11|sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A
mm39_v1_chr5_-_144294854_144294933	0.05274548667857939	UAAUGCU	ENSMUST00000055190.8|Baiap2l1|ENSMUSG00000038859.8|BAI1-associated protein 2-like 1
mm39_v1_chr3_+_105611915_105611996	0.04867124956594186	UAAUGCU	ENSMUST00000066610.8|Inka2|ENSMUSG00000048458.9|inka box actin regulator 2
mm39_v1_chr19_+_29344846_29344868	0.048143623274384595	UAAUGCU	ENSMUST00000016640.8|Cd274|ENSMUSG00000016496.8|CD274 antigen
mm39_v1_chr19_+_55304703_55304799	0.048018167003188374	UAAUGCU	ENSMUST00000225529.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000223690.2|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A	ENSMUST00000095950.3|Vti1a|ENSMUSG00000024983.11|vesicle transport through interaction with t-SNAREs 1A
mm39_v1_chr14_-_39194782_39195045	0.0472156939090864	UAAUGCU	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chr9_+_106245792_106245839	0.04716173883754909	UAAUGCU	ENSMUST00000172306.3|Dusp7|ENSMUSG00000053716.10|dual specificity phosphatase 7
mm39_v1_chr10_-_121146940_121147094	0.046660789614326355	UAAUGCU	ENSMUST00000064107.7|Tbc1d30|ENSMUSG00000052302.7|TBC1 domain family, member 30
mm39_v1_chr12_-_110807330_110807385	0.04650054345569442	UAAUGCU	ENSMUST00000177224.2|Mok|ENSMUSG00000056458.17|MOK protein kinase	ENSMUST00000084974.11|Mok|ENSMUSG00000056458.17|MOK protein kinase	ENSMUST00000070565.15|Mok|ENSMUSG00000056458.17|MOK protein kinase
mm39_v1_chr12_+_71062733_71062837	0.04597803494606165	UAAUGCU	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr1_+_87548026_87548134	0.04497197221028592	UAAUGCU	ENSMUST00000169754.8|Inpp5d|ENSMUSG00000026288.15|inositol polyphosphate-5-phosphatase D	ENSMUST00000042275.15|Inpp5d|ENSMUSG00000026288.15|inositol polyphosphate-5-phosphatase D	ENSMUST00000168783.8|Inpp5d|ENSMUSG00000026288.15|inositol polyphosphate-5-phosphatase D
mm39_v1_chr17_-_80787398_80787398	0.044082202909210465	UAAUGCU	ENSMUST00000068714.7|Sos1|ENSMUSG00000024241.8|SOS Ras/Rac guanine nucleotide exchange factor 1
mm39_v1_chrX_-_161426624_161426661	0.04268420115412635	UAAUGCU	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr11_-_104333059_104333117	0.04049871225613264	UAAUGCU	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr10_-_7831979_7832035	0.040162009082599114	UAAUGCU	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr19_-_34856853_34856864	0.03962317954406571	UAAUGCU	ENSMUST00000036584.13|Pank1|ENSMUSG00000033610.17|pantothenate kinase 1
mm39_v1_chr5_+_93241287_93241310	0.03612625931689455	UAAUGCU	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr2_+_54326329_54326434	0.03593845257865058	UAAUGCU	ENSMUST00000112636.8|Galnt13|ENSMUSG00000060988.13|polypeptide N-acetylgalactosaminyltransferase 13	ENSMUST00000112635.8|Galnt13|ENSMUSG00000060988.13|polypeptide N-acetylgalactosaminyltransferase 13	ENSMUST00000112634.8|Galnt13|ENSMUSG00000060988.13|polypeptide N-acetylgalactosaminyltransferase 13
mm39_v1_chr4_-_126323291_126323349	0.035913800720913894	UAAUGCU	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr5_+_111027654_111027708	0.03304752927277619	UAAUGCU	ENSMUST00000040111.10|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28	ENSMUST00000156290.9|Ttc28|ENSMUSG00000033209.18|tetratricopeptide repeat domain 28
mm39_v1_chrX_-_58179754_58179807	0.032184079518145364	UAAUGCU	ENSMUST00000033473.12|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr7_+_100355798_100355909	0.03201242881265687	UAAUGCU	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chrX_+_57075981_57076003	0.030134808345961425	UAAUGCU	ENSMUST00000088627.11|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3
mm39_v1_chr11_+_21041291_21041308	0.029623965807393033	UAAUGCU	ENSMUST00000093290.12|Peli1|ENSMUSG00000020134.14|pellino 1
mm39_v1_chr10_+_62816005_62816041	0.028349499068545073	UAAUGCU	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr8_+_12445287_12445295	0.027966108552102447	UAAUGCU	ENSMUST00000180353.2|Sox1|ENSMUSG00000096014.2|SRY (sex determining region Y)-box 1
mm39_v1_chr11_+_70323452_70323533	0.02680585993275883	UAAUGCU	ENSMUST00000084954.13|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000108568.10|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000079056.9|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000102564.11|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000124943.8|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000150076.8|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2	ENSMUST00000102563.2|Arrb2|ENSMUSG00000060216.16|arrestin, beta 2
mm39_v1_chr12_+_105750952_105751131	0.024929995139967555	UAAUGCU	ENSMUST00000109901.9|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000168186.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000163473.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170540.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000166735.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170002.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha
mm39_v1_chr16_+_42727926_42728047	0.023474127193378897	UAAUGCU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr12_-_14202041_14202070	0.022042529931039907	UAAUGCU	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr11_+_87959067_87959115	0.021863779717746466	UAAUGCU	ENSMUST00000018521.11|Vezf1|ENSMUSG00000018377.11|vascular endothelial zinc finger 1
mm39_v1_chr16_-_4607848_4607862	0.02171400518897339	UAAUGCU	ENSMUST00000004173.12|Cdip1|ENSMUSG00000004071.14|cell death inducing Trp53 target 1
mm39_v1_chr8_-_89770790_89770823	0.021650378851261153	UAAUGCU	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr8_-_124621483_124621499	0.020352691466153806	UAAUGCU	ENSMUST00000034453.6|Acta1|ENSMUSG00000031972.6|actin, alpha 1, skeletal muscle	ENSMUST00000212584.2|Acta1|ENSMUSG00000031972.6|actin, alpha 1, skeletal muscle
mm39_v1_chr2_+_125876566_125876600	0.01935157751953405	UAAUGCU	ENSMUST00000064794.14|Fgf7|ENSMUSG00000027208.15|fibroblast growth factor 7
mm39_v1_chr7_+_92390811_92390923	0.01912929547174954	UAAUGCU	ENSMUST00000032879.15|Rab30|ENSMUSG00000030643.15|RAB30, member RAS oncogene family
mm39_v1_chr7_-_70010341_70010494	0.0189776689718031	UAAUGCU	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr3_-_84212069_84212116	0.01792623827838212	UAAUGCU	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr4_+_43578707_43578772	0.01742852655793715	UAAUGCU	ENSMUST00000107886.9|Rgp1|ENSMUSG00000028468.16|RAB6A GEF compex partner 1	ENSMUST00000117140.8|Rgp1|ENSMUSG00000028468.16|RAB6A GEF compex partner 1
mm39_v1_chr19_+_41471067_41471128	0.01733416306942168	UAAUGCU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr15_+_96185399_96185487	0.01705523411189051	UAAUGCU	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr7_-_119494918_119494975	0.01623135306381959	UAAUGCU	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr10_+_80458511_80458672	0.015731633347694573	UAAUGCU	ENSMUST00000079773.14|Csnk1g2|ENSMUSG00000003345.17|casein kinase 1, gamma 2
mm39_v1_chr7_-_67022520_67022609	0.015602905402332376	UAAUGCU	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr3_-_37286714_37286786	0.014149473977235158	UAAUGCU	ENSMUST00000161015.2|Il21|ENSMUSG00000027718.9|interleukin 21	ENSMUST00000029273.8|Il21|ENSMUSG00000027718.9|interleukin 21
mm39_v1_chr3_-_19365431_19365486	0.013928340196569947	UAAUGCU	ENSMUST00000099195.10|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr7_+_89779564_89779724	0.013833479432824997	UAAUGCU	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr2_+_15060051_15060222	0.013609754766708124	UAAUGCU	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr4_+_21776261_21776297	0.01355593361898866	UAAUGCU	ENSMUST00000065111.15|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000040429.12|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000148304.8|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45
mm39_v1_chr8_-_87611849_87611935	0.013380865882252827	UAAUGCU	ENSMUST00000034074.8|N4bp1|ENSMUSG00000031652.12|NEDD4 binding protein 1
mm39_v1_chr12_+_71877838_71877948	0.012699384587779798	UAAUGCU	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chr4_-_155306992_155307049	0.012558639471238807	UAAUGCU	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr7_-_6733411_6733429	0.012362187374923289	UAAUGCU	ENSMUST00000239104.2|Peg3|ENSMUSG00000002265.18|paternally expressed 3	ENSMUST00000051209.11|Peg3|ENSMUSG00000002265.18|paternally expressed 3
mm39_v1_chr19_-_60569323_60569468	0.011774354032068701	UAAUGCU	ENSMUST00000111460.5|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000166712.9|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000081790.15|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1
mm39_v1_chr16_-_25924527_25924605	0.011126725201278985	UAAUGCU	ENSMUST00000039990.6|P3h2|ENSMUSG00000038168.6|prolyl 3-hydroxylase 2
mm39_v1_chr1_+_105591595_105591648	0.010947847327672565	UAAUGCU	ENSMUST00000039173.13|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000086721.10|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing	ENSMUST00000190501.7|Relch|ENSMUSG00000026319.14|RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing
mm39_v1_chr5_-_9211689_9211776	0.01089984506009033	UAAUGCU	ENSMUST00000183973.8|Dmtf1|ENSMUSG00000042508.17|cyclin D binding myb-like transcription factor 1	ENSMUST00000184372.8|Dmtf1|ENSMUSG00000042508.17|cyclin D binding myb-like transcription factor 1	ENSMUST00000095017.11|Dmtf1|ENSMUSG00000042508.17|cyclin D binding myb-like transcription factor 1	ENSMUST00000071921.13|Dmtf1|ENSMUSG00000042508.17|cyclin D binding myb-like transcription factor 1
mm39_v1_chr9_+_65008735_65008817	0.010846789084906085	UAAUGCU	ENSMUST00000213533.2|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4	ENSMUST00000035499.5|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4	ENSMUST00000077696.13|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4	ENSMUST00000166273.2|Igdcc4|ENSMUSG00000032816.16|immunoglobulin superfamily, DCC subclass, member 4
mm39_v1_chr1_-_151304191_151304225	0.01061034904222035	UAAUGCU	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr19_+_55730696_55730774	0.010026904325384731	UAAUGCU	ENSMUST00000153888.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000127233.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000061496.17|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111656.8|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111657.11|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box
mm39_v1_chr11_+_119493806_119493975	0.00931578776537965	UAAUGCU	ENSMUST00000026671.13|Rptor|ENSMUSG00000025583.16|regulatory associated protein of MTOR, complex 1
mm39_v1_chr12_+_65083093_65083132	0.008026619570272597	UAAUGCU	ENSMUST00000120580.8|Prpf39|ENSMUSG00000035597.20|pre-mRNA processing factor 39
mm39_v1_chr14_-_26390986_26391038	0.007003875089183255	UAAUGCU	ENSMUST00000052932.10|Pde12|ENSMUSG00000043702.10|phosphodiesterase 12
mm39_v1_chr5_-_28672091_28672254	0.006850789133073232	UAAUGCU	ENSMUST00000002708.5|Shh|ENSMUSG00000002633.5|sonic hedgehog
mm39_v1_chr4_+_9844349_9844372	0.006355630960559888	UAAUGCU	ENSMUST00000057613.3|Gdf6|ENSMUSG00000051279.3|growth differentiation factor 6
mm39_v1_chr19_+_46587523_46587617	0.005142834917070352	UAAUGCU	ENSMUST00000138302.9|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like	ENSMUST00000099376.11|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like
mm39_v1_chr2_-_72810782_72810811	0.004737669248018486	UAAUGCU	ENSMUST00000102689.10|Sp3|ENSMUSG00000027109.17|trans-acting transcription factor 3
mm39_v1_chr11_-_76070325_76070476	0.00418536457122322	UAAUGCU	ENSMUST00000167114.8|Vps53|ENSMUSG00000017288.16|VPS53 GARP complex subunit	ENSMUST00000094015.11|Vps53|ENSMUSG00000017288.16|VPS53 GARP complex subunit	ENSMUST00000108419.9|Vps53|ENSMUSG00000017288.16|VPS53 GARP complex subunit	ENSMUST00000170730.3|Vps53|ENSMUSG00000017288.16|VPS53 GARP complex subunit	ENSMUST00000129256.2|Vps53|ENSMUSG00000017288.16|VPS53 GARP complex subunit	ENSMUST00000056601.11|Vps53|ENSMUSG00000017288.16|VPS53 GARP complex subunit
mm39_v1_chr6_-_144994534_144994551	0.003935032463530871	UAAUGCU	ENSMUST00000032402.12|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr1_+_133291302_133291320	0.0035914428977617914	UAAUGCU	ENSMUST00000135222.9|Etnk2|ENSMUSG00000070644.14|ethanolamine kinase 2
mm39_v1_chr13_-_104365310_104365337	0.003504511873906034	UAAUGCU	ENSMUST00000022226.6|Ppwd1|ENSMUSG00000021713.10|peptidylprolyl isomerase domain and WD repeat containing 1
mm39_v1_chr4_-_151946219_151946333	0.0029497748986502294	UAAUGCU	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr3_-_18297451_18297512	0.0025674843517755844	UAAUGCU	ENSMUST00000035625.7|Cyp7b1|ENSMUSG00000039519.7|cytochrome P450, family 7, subfamily b, polypeptide 1
mm39_v1_chrX_+_165021897_165021909	0.0020028982652589584	UAAUGCU	ENSMUST00000112235.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chr15_-_43034205_43034227	0.001548489936156621	UAAUGCU	ENSMUST00000063492.8|Rspo2|ENSMUSG00000051920.8|R-spondin 2	ENSMUST00000226810.2|Rspo2|ENSMUSG00000051920.8|R-spondin 2
mm39_v1_chr17_+_81251997_81252073	0.0014013880659505663	UAAUGCU	ENSMUST00000025092.5|Tmem178|ENSMUSG00000024245.5|transmembrane protein 178
mm39_v1_chrX_+_132959905_132959988	0.001371154169089937	UAAUGCU	ENSMUST00000113287.8|Cstf2|ENSMUSG00000031256.12|cleavage stimulation factor, 3' pre-RNA subunit 2	ENSMUST00000033609.9|Cstf2|ENSMUSG00000031256.12|cleavage stimulation factor, 3' pre-RNA subunit 2	ENSMUST00000113286.8|Cstf2|ENSMUSG00000031256.12|cleavage stimulation factor, 3' pre-RNA subunit 2
mm39_v1_chr15_+_6737853_6737883	0.001275747542329197	UAAUGCU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr2_-_103133524_103133623	0.0011957304042430976	UAAUGCU	ENSMUST00000090475.10|Ehf|ENSMUSG00000012350.16|ets homologous factor
mm39_v1_chr6_+_122530758_122530775	0.0011668989044391447	UAAUGCU	ENSMUST00000043301.14|Aicda|ENSMUSG00000040627.15|activation-induced cytidine deaminase
mm39_v1_chr9_-_4796217_4796267	0.000860637966174768	UAAUGCU	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chr7_+_51160754_51160794	0.0007613711224704109	UAAUGCU	ENSMUST00000043944.6|Ano5|ENSMUSG00000055489.9|anoctamin 5	ENSMUST00000207044.2|Ano5|ENSMUSG00000055489.9|anoctamin 5
mm39_v1_chr17_-_88372671_88372719	0.000681804342835731	UAAUGCU	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr18_-_82710859_82711058	0.0005954321554081257	UAAUGCU	ENSMUST00000182122.8|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236	ENSMUST00000171071.9|Zfp236|ENSMUSG00000041258.19|zinc finger protein 236
mm39_v1_chr1_+_120268299_120268312	0.00034569134116533873	UAAUGCU	ENSMUST00000037286.12|C1ql2|ENSMUSG00000036907.12|complement component 1, q subcomponent-like 2
mm39_v1_chr18_+_32296126_32296249	0.00010196004594072454	UAAUGCU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr6_+_5725639_5725807	0.00010036451168643418	UAAUGCU	ENSMUST00000115556.8|Dync1i1|ENSMUSG00000029757.17|dynein cytoplasmic 1 intermediate chain 1	ENSMUST00000115555.8|Dync1i1|ENSMUSG00000029757.17|dynein cytoplasmic 1 intermediate chain 1	ENSMUST00000115559.10|Dync1i1|ENSMUSG00000029757.17|dynein cytoplasmic 1 intermediate chain 1
