mm39_v1_chr10_-_9550907_9550987	0.14276176821641648	UCCCUUU	ENSMUST00000100070.5|Samd5|ENSMUSG00000060487.8|sterile alpha motif domain containing 5
mm39_v1_chr14_+_121272950_121272990	0.11762740849816189	UCCCUUU	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr15_-_90563510_90563635	0.09239571345705612	UCCCUUU	ENSMUST00000014777.9|Cpne8|ENSMUSG00000052560.16|copine VIII	ENSMUST00000064391.12|Cpne8|ENSMUSG00000052560.16|copine VIII
mm39_v1_chr1_-_79649683_79649711	0.08448197688733397	UCCCUUU	ENSMUST00000162342.8|Ap1s3|ENSMUSG00000054702.15|adaptor-related protein complex AP-1, sigma 3
mm39_v1_chr17_-_12988492_12988588	0.08235665425739039	UCCCUUU	ENSMUST00000024599.14|Igf2r|ENSMUSG00000023830.15|insulin-like growth factor 2 receptor
mm39_v1_chr10_-_84276454_84276468	0.0759620810108496	UCCCUUU	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chr4_-_3938352_3938401	0.07390572387576164	UCCCUUU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr14_-_25769457_25769513	0.06872829490715626	UCCCUUU	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr2_+_84670956_84670985	0.06775425901897274	UCCCUUU	ENSMUST00000111625.2|Slc43a1|ENSMUSG00000027075.17|solute carrier family 43, member 1
mm39_v1_chr16_+_8647959_8647966	0.06754217898370854	UCCCUUU	ENSMUST00000023150.7|1810013L24Rik|ENSMUSG00000022507.7|RIKEN cDNA 1810013L24 gene
mm39_v1_chr8_+_109441276_109441276	0.06067497800801679	UCCCUUU	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr18_-_16942289_16942384	0.06051760695304008	UCCCUUU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr14_+_49303952_49304045	0.06047051022106967	UCCCUUU	ENSMUST00000037473.6|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit	ENSMUST00000228238.2|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit
mm39_v1_chr17_+_81251997_81252073	0.05677535188808399	UCCCUUU	ENSMUST00000025092.5|Tmem178|ENSMUSG00000024245.5|transmembrane protein 178
mm39_v1_chr3_-_108819003_108819062	0.05621513884214065	UCCCUUU	ENSMUST00000029480.9|Prpf38b|ENSMUSG00000027881.15|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm39_v1_chr15_+_25622611_25622644	0.05557080206367552	UCCCUUU	ENSMUST00000110457.8|Myo10|ENSMUSG00000022272.18|myosin X	ENSMUST00000137601.8|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr5_+_123532819_123532892	0.05241530170810669	UCCCUUU	ENSMUST00000111596.8|Mlxip|ENSMUSG00000038342.16|MLX interacting protein	ENSMUST00000068237.12|Mlxip|ENSMUSG00000038342.16|MLX interacting protein
mm39_v1_chr5_-_51711237_51711264	0.05240338310014562	UCCCUUU	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr1_-_106641940_106642062	0.04608150771239187	UCCCUUU	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr13_+_41013230_41013299	0.04561108418113212	UCCCUUU	ENSMUST00000110191.10|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr14_-_39194782_39195045	0.044987161775304596	UCCCUUU	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chr6_+_47854138_47854138	0.04480480107711943	UCCCUUU	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chr6_-_39354570_39354612	0.044489740215387666	UCCCUUU	ENSMUST00000200771.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202204.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202952.2|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202400.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000200969.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202749.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000090243.8|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm39_v1_chr2_+_3714492_3714507	0.043567739503722655	UCCCUUU	ENSMUST00000027965.11|Fam107b|ENSMUSG00000026655.16|family with sequence similarity 107, member B
mm39_v1_chr7_+_141142075_141142105	0.041498758953745905	UCCCUUU	ENSMUST00000003038.12|Ap2a2|ENSMUSG00000002957.12|adaptor-related protein complex 2, alpha 2 subunit
mm39_v1_chr9_-_60418286_60418318	0.041031698789799946	UCCCUUU	ENSMUST00000098660.10|Thsd4|ENSMUSG00000032289.16|thrombospondin, type I, domain containing 4
mm39_v1_chr5_-_62923463_62923615	0.03989772991469408	UCCCUUU	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr2_-_5900130_5900243	0.03842301121613401	UCCCUUU	ENSMUST00000026926.5|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000193792.6|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000102981.10|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)
mm39_v1_chr15_-_98505508_98505519	0.0363650057389213	UCCCUUU	ENSMUST00000096224.6|Adcy6|ENSMUSG00000022994.10|adenylate cyclase 6
mm39_v1_chr10_+_67815395_67815408	0.03588266197708628	UCCCUUU	ENSMUST00000118160.8|Rtkn2|ENSMUSG00000037846.19|rhotekin 2
mm39_v1_chr5_-_114046746_114046819	0.03564451160402628	UCCCUUU	ENSMUST00000004646.13|Coro1c|ENSMUSG00000004530.13|coronin, actin binding protein 1C
mm39_v1_chr7_+_4122523_4122554	0.035469280397521265	UCCCUUU	ENSMUST00000119661.8|Ttyh1|ENSMUSG00000030428.17|tweety family member 1	ENSMUST00000129423.8|Ttyh1|ENSMUSG00000030428.17|tweety family member 1
mm39_v1_chr15_-_78004211_78004232	0.033722320824123124	UCCCUUU	ENSMUST00000019290.3|Cacng2|ENSMUSG00000019146.3|calcium channel, voltage-dependent, gamma subunit 2
mm39_v1_chr8_+_26609384_26609416	0.03312748095500653	UCCCUUU	ENSMUST00000014022.15|Rnf170|ENSMUSG00000013878.19|ring finger protein 170	ENSMUST00000209300.2|Rnf170|ENSMUSG00000013878.19|ring finger protein 170	ENSMUST00000153528.8|Rnf170|ENSMUSG00000013878.19|ring finger protein 170	ENSMUST00000209707.2|Rnf170|ENSMUSG00000013878.19|ring finger protein 170
mm39_v1_chr1_+_127701901_127701975	0.032744957001252246	UCCCUUU	ENSMUST00000112570.2|Ccnt2|ENSMUSG00000026349.15|cyclin T2	ENSMUST00000027587.15|Ccnt2|ENSMUSG00000026349.15|cyclin T2
mm39_v1_chr8_-_26609153_26609260	0.0323903048739387	UCCCUUU	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr4_+_137004793_137004800	0.031843965046329664	UCCCUUU	ENSMUST00000045747.5|Wnt4|ENSMUSG00000036856.5|wingless-type MMTV integration site family, member 4
mm39_v1_chr9_+_103879745_103879976	0.031087601088177215	UCCCUUU	ENSMUST00000035167.15|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)	ENSMUST00000194774.6|Nphp3|ENSMUSG00000032558.20|nephronophthisis 3 (adolescent)
mm39_v1_chr1_-_34882131_34882148	0.031019324649886108	UCCCUUU	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr9_-_106764627_106764627	0.029370865096818445	UCCCUUU	ENSMUST00000055843.9|Rbm15b|ENSMUSG00000074102.5|RNA binding motif protein 15B
mm39_v1_chr9_-_21963306_21963322	0.02869528750918007	UCCCUUU	ENSMUST00000003501.9|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3	ENSMUST00000215901.2|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3
mm39_v1_chr13_+_31990604_31990633	0.028637208967524003	UCCCUUU	ENSMUST00000062292.5|Foxc1|ENSMUSG00000050295.5|forkhead box C1
mm39_v1_chr15_-_98796373_98796430	0.027897971670834257	UCCCUUU	ENSMUST00000229775.2|Dhh|ENSMUSG00000023000.6|desert hedgehog	ENSMUST00000023737.6|Dhh|ENSMUSG00000023000.6|desert hedgehog
mm39_v1_chr16_+_42727926_42728047	0.027343226837754062	UCCCUUU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr6_-_31540913_31540924	0.02721690801424854	UCCCUUU	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr3_+_129326004_129326089	0.026331975301413946	UCCCUUU	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr1_-_43137768_43137847	0.025976838920011364	UCCCUUU	ENSMUST00000190427.7|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1	ENSMUST00000095014.8|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1
mm39_v1_chr6_+_100681670_100681721	0.025900332211674704	UCCCUUU	ENSMUST00000032157.9|Gxylt2|ENSMUSG00000030074.10|glucoside xylosyltransferase 2
mm39_v1_chr1_+_160733942_160734030	0.025045702848994867	UCCCUUU	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr3_-_95125002_95125038	0.024917667695468725	UCCCUUU	ENSMUST00000107209.8|Gabpb2|ENSMUSG00000038766.17|GA repeat binding protein, beta 2
mm39_v1_chr8_-_124709859_124709890	0.02477995774095976	UCCCUUU	ENSMUST00000075578.7|Abcb10|ENSMUSG00000031974.9|ATP-binding cassette, sub-family B (MDR/TAP), member 10
mm39_v1_chr14_-_21102487_21102592	0.024068234775027002	UCCCUUU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr9_+_56982622_56982727	0.0227540864358472	UCCCUUU	ENSMUST00000167715.8|Sin3a|ENSMUSG00000042557.15|transcriptional regulator, SIN3A (yeast)
mm39_v1_chr12_-_84265609_84265663	0.02210107567060743	UCCCUUU	ENSMUST00000046266.13|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein	ENSMUST00000220974.2|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein
mm39_v1_chr3_+_89325750_89325879	0.02157793873126077	UCCCUUU	ENSMUST00000039110.12|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1	ENSMUST00000125036.8|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1	ENSMUST00000191485.7|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1	ENSMUST00000154791.8|Shc1|ENSMUSG00000042626.14|src homology 2 domain-containing transforming protein C1
mm39_v1_chr13_+_9143995_9144018	0.021237893265392757	UCCCUUU	ENSMUST00000091829.4|Larp4b|ENSMUSG00000033499.15|La ribonucleoprotein domain family, member 4B
mm39_v1_chr7_+_99184645_99184709	0.02122156820465616	UCCCUUU	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr2_-_130681978_130682070	0.02082751698298632	UCCCUUU	ENSMUST00000044766.15|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000138990.2|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000120316.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene	ENSMUST00000110243.8|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene
mm39_v1_chr3_-_97134680_97134738	0.02066947228549828	UCCCUUU	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr10_-_75353157_75353215	0.020449211138807297	UCCCUUU	ENSMUST00000039796.14|Gucd1|ENSMUSG00000033416.16|guanylyl cyclase domain containing 1
mm39_v1_chrX_-_63320543_63320608	0.01859205755221537	UCCCUUU	ENSMUST00000114679.2|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4	ENSMUST00000069926.14|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4
mm39_v1_chr11_+_97253221_97253377	0.018190492389630004	UCCCUUU	ENSMUST00000238729.2|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7	ENSMUST00000045540.4|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7
mm39_v1_chr15_+_80595486_80595541	0.017680868282969178	UCCCUUU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr1_-_84818223_84818261	0.017663689472810735	UCCCUUU	ENSMUST00000186465.7|Trip12|ENSMUSG00000026219.15|thyroid hormone receptor interactor 12
mm39_v1_chr5_+_110324506_110324567	0.017469032225203036	UCCCUUU	ENSMUST00000112512.8|Golga3|ENSMUSG00000029502.15|golgi autoantigen, golgin subfamily a, 3
mm39_v1_chr2_+_173501553_173501664	0.01745275593936309	UCCCUUU	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr7_+_127344942_127344999	0.01743328140878322	UCCCUUU	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr10_+_22520910_22521008	0.017021425645421365	UCCCUUU	ENSMUST00000042261.5|Slc2a12|ENSMUSG00000037490.6|solute carrier family 2 (facilitated glucose transporter), member 12
mm39_v1_chr4_-_142939260_142939303	0.016961968365933826	UCCCUUU	ENSMUST00000105778.8|Prdm2|ENSMUSG00000057637.14|PR domain containing 2, with ZNF domain	ENSMUST00000134791.2|Prdm2|ENSMUSG00000057637.14|PR domain containing 2, with ZNF domain
mm39_v1_chr5_+_108609087_108609107	0.01621448928998243	UCCCUUU	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr12_-_107969853_107969872	0.015692839218580352	UCCCUUU	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr3_-_89820451_89820509	0.015686777064114157	UCCCUUU	ENSMUST00000029559.7|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha	ENSMUST00000197679.5|Il6ra|ENSMUSG00000027947.12|interleukin 6 receptor, alpha
mm39_v1_chr13_-_76091931_76092069	0.01547018017472842	UCCCUUU	ENSMUST00000022078.12|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3	ENSMUST00000109606.3|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3
mm39_v1_chr2_+_15060051_15060222	0.015312789166249329	UCCCUUU	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr11_-_18968979_18968990	0.015105297414717129	UCCCUUU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr2_+_116951855_116951880	0.01480135073706393	UCCCUUU	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chr16_-_25924527_25924605	0.014793777229627368	UCCCUUU	ENSMUST00000039990.6|P3h2|ENSMUSG00000038168.6|prolyl 3-hydroxylase 2
mm39_v1_chr2_-_164753480_164753677	0.014675511953791381	UCCCUUU	ENSMUST00000041361.14|Zfp335|ENSMUSG00000039834.18|zinc finger protein 335
mm39_v1_chr12_-_34578842_34578903	0.014665648602824988	UCCCUUU	ENSMUST00000110819.4|Hdac9|ENSMUSG00000004698.12|histone deacetylase 9
mm39_v1_chr12_+_76417040_76417040	0.014377993158457475	UCCCUUU	ENSMUST00000042779.4|Zbtb1|ENSMUSG00000033454.7|zinc finger and BTB domain containing 1
mm39_v1_chr4_+_150366028_150366103	0.014079430525386698	UCCCUUU	ENSMUST00000105682.9|Rere|ENSMUSG00000039852.18|arginine glutamic acid dipeptide (RE) repeats
mm39_v1_chr2_-_52314837_52314928	0.013511730486194772	UCCCUUU	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr5_-_99400698_99400786	0.012994451942490645	UCCCUUU	ENSMUST00000031276.15|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B	ENSMUST00000168092.8|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B
mm39_v1_chr6_-_57512355_57512433	0.012787966287381254	UCCCUUU	ENSMUST00000042766.6|Ppm1k|ENSMUSG00000037826.6|protein phosphatase 1K (PP2C domain containing)
mm39_v1_chr13_+_74157538_74157572	0.012661006007672964	UCCCUUU	ENSMUST00000022057.9|Tppp|ENSMUSG00000021573.16|tubulin polymerization promoting protein
mm39_v1_chr4_+_57637817_57637845	0.01231509037716392	UCCCUUU	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr9_+_62585108_62585125	0.01209106857454209	UCCCUUU	ENSMUST00000034774.9|Itga11|ENSMUSG00000032243.9|integrin alpha 11
mm39_v1_chr8_+_106786190_106786265	0.012044781978629637	UCCCUUU	ENSMUST00000109308.3|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr19_-_41969558_41969596	0.01158071840672292	UCCCUUU	ENSMUST00000026168.9|Mms19|ENSMUSG00000025159.9|MMS19 cytosolic iron-sulfur assembly component	ENSMUST00000171561.8|Mms19|ENSMUSG00000025159.9|MMS19 cytosolic iron-sulfur assembly component
mm39_v1_chr7_-_105049197_105049261	0.011500703616143778	UCCCUUU	ENSMUST00000048079.14|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000118726.8|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000074686.10|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000122327.7|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000179474.9|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2
mm39_v1_chr4_+_57845240_57845265	0.011369964170014842	UCCCUUU	ENSMUST00000102903.8|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein	ENSMUST00000107598.9|Pakap|ENSMUSG00000038729.25|paralemmin A kinase anchor protein
mm39_v1_chr12_-_46865709_46865720	0.011138968868657364	UCCCUUU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr1_-_190643922_190644009	0.010567977989491271	UCCCUUU	ENSMUST00000159066.2|Rps6kc1|ENSMUSG00000089872.11|ribosomal protein S6 kinase polypeptide 1	ENSMUST00000061611.15|Rps6kc1|ENSMUSG00000089872.11|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr2_-_69416365_69416409	0.010378897919893146	UCCCUUU	ENSMUST00000100051.9|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000092551.5|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2	ENSMUST00000080953.12|Lrp2|ENSMUSG00000027070.15|low density lipoprotein receptor-related protein 2
mm39_v1_chr14_-_61794330_61794339	0.010256629794765226	UCCCUUU	ENSMUST00000022497.15|Spryd7|ENSMUSG00000021930.15|SPRY domain containing 7
mm39_v1_chr17_-_45047521_45047561	0.010205405744966409	UCCCUUU	ENSMUST00000113572.9|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr11_+_72580823_72580841	0.010114927461482851	UCCCUUU	ENSMUST00000155998.2|Ankfy1|ENSMUSG00000020790.15|ankyrin repeat and FYVE domain containing 1
mm39_v1_chr6_-_92191878_92191906	0.009887050794702753	UCCCUUU	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chr11_-_69451012_69451039	0.009740069737826141	UCCCUUU	ENSMUST00000004036.6|Efnb3|ENSMUSG00000003934.6|ephrin B3
mm39_v1_chr10_+_127928622_127928700	0.009727566288094212	UCCCUUU	ENSMUST00000219072.2|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A	ENSMUST00000045621.9|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A	ENSMUST00000170054.9|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A
mm39_v1_chr1_-_57011595_57011661	0.009597193934575492	UCCCUUU	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr15_+_6737853_6737883	0.009567074513897328	UCCCUUU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr3_-_138195133_138195276	0.009473070967732233	UCCCUUU	ENSMUST00000197531.2|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1	ENSMUST00000029804.13|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1
mm39_v1_chr4_+_117109204_117109254	0.00927243803751298	UCCCUUU	ENSMUST00000125943.8|Tmem53|ENSMUSG00000048772.16|transmembrane protein 53	ENSMUST00000106434.8|Tmem53|ENSMUSG00000048772.16|transmembrane protein 53
mm39_v1_chr7_-_128063354_128063397	0.009241611789314702	UCCCUUU	ENSMUST00000106226.9|Tial1|ENSMUSG00000030846.16|Tia1 cytotoxic granule-associated RNA binding protein-like 1	ENSMUST00000106228.8|Tial1|ENSMUSG00000030846.16|Tia1 cytotoxic granule-associated RNA binding protein-like 1
mm39_v1_chr13_-_29137673_29137696	0.009168674287918942	UCCCUUU	ENSMUST00000067230.6|Sox4|ENSMUSG00000076431.5|SRY (sex determining region Y)-box 4
mm39_v1_chr10_+_4561974_4562075	0.00911059835230622	UCCCUUU	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr13_+_38010203_38010291	0.008909600179467085	UCCCUUU	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr10_+_126914755_126914787	0.008763434023080923	UCCCUUU	ENSMUST00000039259.7|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	ENSMUST00000217941.2|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
mm39_v1_chr16_+_17269845_17269903	0.00871390894679281	UCCCUUU	ENSMUST00000006293.5|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like	ENSMUST00000231228.2|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like
mm39_v1_chrX_+_162691978_162692013	0.00865785034171411	UCCCUUU	ENSMUST00000069041.15|Ap1s2|ENSMUSG00000031367.16|adaptor-related protein complex 1, sigma 2 subunit
mm39_v1_chr5_-_135963408_135963467	0.008518644881446859	UCCCUUU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr11_+_80099843_80099884	0.008359497573829647	UCCCUUU	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr2_-_156833932_156834053	0.008354510552108712	UCCCUUU	ENSMUST00000109558.2|Ndrg3|ENSMUSG00000027634.15|N-myc downstream regulated gene 3	ENSMUST00000069600.13|Ndrg3|ENSMUSG00000027634.15|N-myc downstream regulated gene 3	ENSMUST00000072298.13|Ndrg3|ENSMUSG00000027634.15|N-myc downstream regulated gene 3
mm39_v1_chr3_-_94566107_94566185	0.008130438214838675	UCCCUUU	ENSMUST00000196655.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000200407.2|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000006123.11|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000196733.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1
mm39_v1_chr2_-_57004933_57005050	0.008072690777625643	UCCCUUU	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr10_-_122912272_122912410	0.007783550061999435	UCCCUUU	ENSMUST00000219203.2|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking	ENSMUST00000073792.11|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking
mm39_v1_chr4_-_58553311_58553357	0.007676504690268745	UCCCUUU	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr9_+_95836797_95836836	0.007587065568425411	UCCCUUU	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr2_+_31462780_31462841	0.007573446842798798	UCCCUUU	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chrX_-_55643429_55643467	0.007321554657305913	UCCCUUU	ENSMUST00000059899.3|Mmgt1|ENSMUSG00000061273.4|membrane magnesium transporter 1
mm39_v1_chr1_-_21149392_21149467	0.007304517093973866	UCCCUUU	ENSMUST00000037998.6|Tram2|ENSMUSG00000041779.6|translocating chain-associating membrane protein 2
mm39_v1_chr19_+_5524701_5524806	0.007296608316510691	UCCCUUU	ENSMUST00000165485.8|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	ENSMUST00000166253.8|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	ENSMUST00000167371.8|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	ENSMUST00000167855.8|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2	ENSMUST00000070118.14|Efemp2|ENSMUSG00000024909.16|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm39_v1_chr18_-_39623698_39623771	0.007184025567110143	UCCCUUU	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr1_-_163141230_163141246	0.006945147745377855	UCCCUUU	ENSMUST00000174397.3|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1	ENSMUST00000075805.13|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr2_-_33321306_33321359	0.006807236599033488	UCCCUUU	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chrX_+_100892981_100892998	0.0064121266257939355	UCCCUUU	ENSMUST00000124279.6|Nhsl2|ENSMUSG00000079481.12|NHS-like 2	ENSMUST00000101339.8|Nhsl2|ENSMUSG00000079481.12|NHS-like 2
mm39_v1_chr10_-_110845860_110845927	0.006373982683560562	UCCCUUU	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr18_-_15196612_15196675	0.005950719972864321	UCCCUUU	ENSMUST00000168989.9|Kctd1|ENSMUSG00000036225.16|potassium channel tetramerisation domain containing 1
mm39_v1_chrX_-_143471176_143471176	0.005018586761129325	UCCCUUU	ENSMUST00000040184.4|Trpc5|ENSMUSG00000041710.5|transient receptor potential cation channel, subfamily C, member 5
mm39_v1_chr5_+_124577952_124578061	0.004926100667484452	UCCCUUU	ENSMUST00000059580.11|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr15_-_82796308_82796390	0.004925796959436778	UCCCUUU	ENSMUST00000109510.10|Tcf20|ENSMUSG00000041852.16|transcription factor 20	ENSMUST00000048966.7|Tcf20|ENSMUSG00000041852.16|transcription factor 20
mm39_v1_chr1_-_170695328_170695354	0.004849873615341459	UCCCUUU	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr7_-_131012202_131012250	0.004799448393113938	UCCCUUU	ENSMUST00000207243.2|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000128432.3|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000121033.8|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5	ENSMUST00000046306.15|Ikzf5|ENSMUSG00000040167.17|IKAROS family zinc finger 5
mm39_v1_chr19_-_18978463_18978483	0.004581592299705487	UCCCUUU	ENSMUST00000040153.15|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta	ENSMUST00000112828.8|Rorb|ENSMUSG00000036192.16|RAR-related orphan receptor beta
mm39_v1_chr16_+_56942050_56942066	0.00455981010476448	UCCCUUU	ENSMUST00000166897.3|Tomm70a|ENSMUSG00000022752.10|translocase of outer mitochondrial membrane 70A
mm39_v1_chr19_+_41471067_41471128	0.004001069281748219	UCCCUUU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr18_+_69478790_69478882	0.0037610586504423634	UCCCUUU	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr7_+_132460954_132460996	0.0031557850064440505	UCCCUUU	ENSMUST00000084497.12|Abraxas2|ENSMUSG00000030965.20|BRISC complex subunit	ENSMUST00000106161.8|Abraxas2|ENSMUSG00000030965.20|BRISC complex subunit
mm39_v1_chr10_-_116984386_116984452	0.0024650357608661756	UCCCUUU	ENSMUST00000020381.5|Frs2|ENSMUSG00000020170.5|fibroblast growth factor receptor substrate 2
mm39_v1_chr17_-_80787398_80787398	0.0022354223976031565	UCCCUUU	ENSMUST00000068714.7|Sos1|ENSMUSG00000024241.8|SOS Ras/Rac guanine nucleotide exchange factor 1
mm39_v1_chr4_-_155306992_155307049	0.00205756756278278	UCCCUUU	ENSMUST00000084103.10|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)	ENSMUST00000030917.6|Ski|ENSMUSG00000029050.16|ski sarcoma viral oncogene homolog (avian)
mm39_v1_chr2_-_34645241_34645268	0.0016861048320915475	UCCCUUU	ENSMUST00000102800.9|Gapvd1|ENSMUSG00000026867.20|GTPase activating protein and VPS9 domains 1
mm39_v1_chr2_-_33777874_33777958	0.0015590292648692938	UCCCUUU	ENSMUST00000041555.10|Mvb12b|ENSMUSG00000038740.10|multivesicular body subunit 12B
mm39_v1_chr10_+_128641520_128641565	0.001462101496342084	UCCCUUU	ENSMUST00000219508.2|Dnajc14|ENSMUSG00000025354.6|DnaJ heat shock protein family (Hsp40) member C14	ENSMUST00000026410.2|Dnajc14|ENSMUSG00000025354.6|DnaJ heat shock protein family (Hsp40) member C14
mm39_v1_chr6_-_92920466_92920488	0.0013008648806367557	UCCCUUU	ENSMUST00000113438.8|Adamts9|ENSMUSG00000030022.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm39_v1_chr2_-_37537224_37537297	0.0012856260567764026	UCCCUUU	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr11_+_105975403_105975449	0.000888241185556951	UCCCUUU	ENSMUST00000002044.10|Map3k3|ENSMUSG00000020700.12|mitogen-activated protein kinase kinase kinase 3
mm39_v1_chr8_-_122379631_122379652	0.0007710860821947245	UCCCUUU	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr4_+_57434247_57434369	0.0002954882433737692	UCCCUUU	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr19_-_7218512_7218566	0.00023710572926469525	UCCCUUU	ENSMUST00000025675.11|Naa40|ENSMUSG00000024764.11|N(alpha)-acetyltransferase 40, NatD catalytic subunit
mm39_v1_chr11_+_54329014_54329046	0.0001971777900254479	UCCCUUU	ENSMUST00000046835.14|Fnip1|ENSMUSG00000035992.16|folliculin interacting protein 1
mm39_v1_chr1_+_59952131_59952186	8.995163294998765e-05	UCCCUUU	ENSMUST00000036540.12|Fam117b|ENSMUSG00000041040.13|family with sequence similarity 117, member B
mm39_v1_chr14_+_55120875_55120972	6.910693120257941e-05	UCCCUUU	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
