mm39_v1_chr11_-_115918784_115918826	0.021797923358640125	UGACCUA	ENSMUST00000106454.8|H3f3b|ENSMUSG00000016559.15|H3.3 histone B
mm39_v1_chrX_-_163041185_163041195	0.017018962266437173	UGACCUA	ENSMUST00000112265.9|Bmx|ENSMUSG00000031377.12|BMX non-receptor tyrosine kinase
mm39_v1_chr10_-_31485180_31485180	0.0139586961565906	UGACCUA	ENSMUST00000081989.8|Rnf217|ENSMUSG00000063760.10|ring finger protein 217
mm39_v1_chr2_+_27776428_27776452	0.011275364622301352	UGACCUA	ENSMUST00000028280.14|Col5a1|ENSMUSG00000026837.17|collagen, type V, alpha 1
mm39_v1_chr2_-_45003270_45003296	0.008962824442309105	UGACCUA	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr2_+_48704121_48704187	0.008757423010496866	UGACCUA	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr4_+_149670889_149670968	0.008693372864644035	UGACCUA	ENSMUST00000105691.8|Clstn1|ENSMUSG00000039953.14|calsyntenin 1
mm39_v1_chr2_-_178056251_178056300	0.007006913993147249	UGACCUA	ENSMUST00000058678.5|Ppp1r3d|ENSMUSG00000049999.5|protein phosphatase 1, regulatory subunit 3D
mm39_v1_chr14_+_58063668_58063729	0.006927989963343719	UGACCUA	ENSMUST00000022538.5|Mrpl57|ENSMUSG00000021967.5|mitochondrial ribosomal protein L57
mm39_v1_chr5_+_32616187_32616312	0.006755452459562351	UGACCUA	ENSMUST00000015100.15|Ppp1cb|ENSMUSG00000014956.16|protein phosphatase 1 catalytic subunit beta
mm39_v1_chr5_+_107745562_107745601	0.006684555253249001	UGACCUA	ENSMUST00000112651.8|Rpap2|ENSMUSG00000033773.15|RNA polymerase II associated protein 2	ENSMUST00000112654.8|Rpap2|ENSMUSG00000033773.15|RNA polymerase II associated protein 2	ENSMUST00000065422.12|Rpap2|ENSMUSG00000033773.15|RNA polymerase II associated protein 2
mm39_v1_chr4_+_8535604_8535717	0.005791884432429938	UGACCUA	ENSMUST00000060232.8|Rab2a|ENSMUSG00000047187.10|RAB2A, member RAS oncogene family
mm39_v1_chr1_-_184578057_184578078	0.0054444537052689285	UGACCUA	ENSMUST00000068725.10|Mtarc2|ENSMUSG00000073481.10|mitochondrial amidoxime reducing component 2
mm39_v1_chr7_-_100232276_100232332	0.004950240047750045	UGACCUA	ENSMUST00000152876.3|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48	ENSMUST00000150042.8|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48	ENSMUST00000132888.9|Mrpl48|ENSMUSG00000030706.18|mitochondrial ribosomal protein L48
mm39_v1_chr1_-_131066004_131066077	0.004755005960026617	UGACCUA	ENSMUST00000016670.9|Dyrk3|ENSMUSG00000016526.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
mm39_v1_chr4_+_149602673_149602735	0.004742888252749501	UGACCUA	ENSMUST00000030839.13|Ctnnbip1|ENSMUSG00000028988.14|catenin beta interacting protein 1
mm39_v1_chr6_+_145156860_145156933	0.004529869027711606	UGACCUA	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chr3_+_116306719_116306793	0.004348691504642488	UGACCUA	ENSMUST00000000349.11|Dbt|ENSMUSG00000000340.11|dihydrolipoamide branched chain transacylase E2	ENSMUST00000197201.5|Dbt|ENSMUSG00000000340.11|dihydrolipoamide branched chain transacylase E2
mm39_v1_chr19_+_27194757_27194825	0.004095363280287643	UGACCUA	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr7_-_126721398_126721398	0.0038934546857103476	UGACCUA	ENSMUST00000032912.6|Qprt|ENSMUSG00000030674.6|quinolinate phosphoribosyltransferase
mm39_v1_chr3_-_27764571_27764616	0.0038835376673643247	UGACCUA	ENSMUST00000046157.10|Fndc3b|ENSMUSG00000039286.13|fibronectin type III domain containing 3B
mm39_v1_chr3_-_146518706_146518768	0.003276438491518206	UGACCUA	ENSMUST00000102515.10|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr2_-_157408239_157408281	0.003028621016626516	UGACCUA	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr10_-_53252210_53252261	0.002673277110445785	UGACCUA	ENSMUST00000095691.7|Cep85l|ENSMUSG00000038594.10|centrosomal protein 85-like
mm39_v1_chr4_+_8691303_8691381	0.002466290106837816	UGACCUA	ENSMUST00000051558.10|Chd7|ENSMUSG00000041235.13|chromodomain helicase DNA binding protein 7
mm39_v1_chrX_-_47123719_47123736	0.0023058241531647744	UGACCUA	ENSMUST00000039026.8|Apln|ENSMUSG00000037010.8|apelin
mm39_v1_chr4_-_40703155_40703202	0.002025053646216994	UGACCUA	ENSMUST00000108103.9|Aptx|ENSMUSG00000028411.16|aprataxin	ENSMUST00000030119.10|Aptx|ENSMUSG00000028411.16|aprataxin
mm39_v1_chr10_-_10348058_10348149	0.0019808960656976385	UGACCUA	ENSMUST00000179956.8|Adgb|ENSMUSG00000050994.21|androglobin	ENSMUST00000208717.2|Adgb|ENSMUSG00000050994.21|androglobin	ENSMUST00000172530.8|Adgb|ENSMUSG00000050994.21|androglobin	ENSMUST00000132573.2|Adgb|ENSMUSG00000050994.21|androglobin
mm39_v1_chr9_-_50657800_50657848	0.0019783335864882335	UGACCUA	ENSMUST00000239417.2|2310030G06Rik|ENSMUSG00000032062.4|RIKEN cDNA 2310030G06 gene	ENSMUST00000034564.4|2310030G06Rik|ENSMUSG00000032062.4|RIKEN cDNA 2310030G06 gene
mm39_v1_chrX_+_95139639_95139662	0.0019385656909570845	UGACCUA	ENSMUST00000117399.2|Msn|ENSMUSG00000031207.17|moesin
mm39_v1_chr12_-_75224099_75224133	0.0019292339696694474	UGACCUA	ENSMUST00000042299.4|Kcnh5|ENSMUSG00000034402.4|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm39_v1_chr4_+_123176570_123176704	0.0019247188124600495	UGACCUA	ENSMUST00000106243.8|Pabpc4|ENSMUSG00000011257.20|poly(A) binding protein, cytoplasmic 4	ENSMUST00000106241.8|Pabpc4|ENSMUSG00000011257.20|poly(A) binding protein, cytoplasmic 4	ENSMUST00000080178.13|Pabpc4|ENSMUSG00000011257.20|poly(A) binding protein, cytoplasmic 4
mm39_v1_chr9_+_35332837_35332913	0.0018928458362369206	UGACCUA	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr15_-_35155896_35155959	0.001833408868737643	UGACCUA	ENSMUST00000067033.8|Stk3|ENSMUSG00000022329.16|serine/threonine kinase 3	ENSMUST00000018476.14|Stk3|ENSMUSG00000022329.16|serine/threonine kinase 3
mm39_v1_chr16_+_35803674_35803765	0.0017937829132158825	UGACCUA	ENSMUST00000004054.13|Kpna1|ENSMUSG00000022905.13|karyopherin (importin) alpha 1
mm39_v1_chr13_-_37234213_37234249	0.00145785194618369	UGACCUA	ENSMUST00000164727.8|F13a1|ENSMUSG00000039109.18|coagulation factor XIII, A1 subunit
mm39_v1_chr9_-_16289527_16289527	0.0013649947685293003	UGACCUA	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr2_+_58991352_58991398	0.001280628550855356	UGACCUA	ENSMUST00000037903.15|Pkp4|ENSMUSG00000026991.21|plakophilin 4
mm39_v1_chr7_+_49559859_49559894	0.0012516275587116513	UGACCUA	ENSMUST00000056442.12|Slc6a5|ENSMUSG00000039728.16|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm39_v1_chr5_+_88702307_88702357	0.0011258235028744291	UGACCUA	ENSMUST00000090413.6|Utp3|ENSMUSG00000070697.5|UTP3 small subunit processome component
mm39_v1_chr10_-_39009844_39009908	0.001089245661861498	UGACCUA	ENSMUST00000134279.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000139743.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000149949.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000124941.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000125042.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000063204.9|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr4_+_21931290_21931367	0.0010202285785716983	UGACCUA	ENSMUST00000029908.8|Faxc|ENSMUSG00000028246.14|failed axon connections homolog
mm39_v1_chr3_+_18108313_18108338	0.0010049359379887218	UGACCUA	ENSMUST00000026120.8|Bhlhe22|ENSMUSG00000025128.8|basic helix-loop-helix family, member e22
mm39_v1_chr5_+_72805122_72805144	0.0009255371460710705	UGACCUA	ENSMUST00000087212.8|Nipal1|ENSMUSG00000067219.10|NIPA-like domain containing 1
mm39_v1_chr2_+_107120934_107121005	0.0008661325452289955	UGACCUA	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr18_-_38068456_38068529	0.0008058307048553488	UGACCUA	ENSMUST00000080033.7|Diaph1|ENSMUSG00000024456.17|diaphanous related formin 1	ENSMUST00000115631.8|Diaph1|ENSMUSG00000024456.17|diaphanous related formin 1	ENSMUST00000115634.8|Diaph1|ENSMUSG00000024456.17|diaphanous related formin 1
mm39_v1_chr5_-_136596299_136596390	0.0007830723546407303	UGACCUA	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr1_-_10302895_10302895	0.0007177300602051219	UGACCUA	ENSMUST00000088615.11|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	ENSMUST00000131556.2|Arfgef1|ENSMUSG00000067851.12|ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
mm39_v1_chr9_-_56835633_56835676	0.0007077850889497026	UGACCUA	ENSMUST00000050916.7|Snx33|ENSMUSG00000032733.7|sorting nexin 33
mm39_v1_chr10_+_87695117_87695128	0.0005481654672134376	UGACCUA	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr18_-_72484126_72484140	0.0005382438837115108	UGACCUA	ENSMUST00000114943.11|Dcc|ENSMUSG00000060534.17|deleted in colorectal carcinoma
mm39_v1_chr5_+_73808718_73808737	0.0005095617821603524	UGACCUA	ENSMUST00000071077.14|Spata18|ENSMUSG00000029155.17|spermatogenesis associated 18
mm39_v1_chr15_-_8473918_8473991	0.00044568212411369787	UGACCUA	ENSMUST00000052965.8|Nipbl|ENSMUSG00000022141.8|NIPBL cohesin loading factor
mm39_v1_chrX_+_48559327_48559425	0.0004015273329704676	UGACCUA	ENSMUST00000114904.10|Arhgap36|ENSMUSG00000036198.13|Rho GTPase activating protein 36
mm39_v1_chr5_+_91222470_91222487	0.00037933419628030635	UGACCUA	ENSMUST00000031324.6|Ereg|ENSMUSG00000029377.6|epiregulin
mm39_v1_chr4_-_96673423_96673423	0.0003719305291640841	UGACCUA	ENSMUST00000107071.2|Gm12695|ENSMUSG00000078639.2|predicted gene 12695
mm39_v1_chr3_-_41037427_41037481	0.00019476509875161025	UGACCUA	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
