mm39_v1_chr8_+_83589979_83590055	1.443268170644265	AAGUGCU	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr1_-_74163575_74163626	1.1346758711955	AAGUGCU	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr3_-_122778052_122778163	1.0853001150770245	AAGUGCU	ENSMUST00000199401.2|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197314.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197934.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000090379.7|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53
mm39_v1_chr17_-_32074754_32074780	1.0643684029097908	AAGUGCU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr7_-_100581314_100581413	1.023568837649079	AAGUGCU	ENSMUST00000107032.3|Arhgef17|ENSMUSG00000032875.9|Rho guanine nucleotide exchange factor (GEF) 17
mm39_v1_chr6_-_149003171_149003184	0.8754949150384322	AAGUGCU	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr7_-_98305737_98305808	0.8582864870916243	AAGUGCU	ENSMUST00000205911.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000038359.6|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206611.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206619.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr15_-_53765869_53765926	0.8121140250360156	AAGUGCU	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr19_-_30526916_30527065	0.7746565260993139	AAGUGCU	ENSMUST00000025803.9|Dkk1|ENSMUSG00000024868.9|dickkopf WNT signaling pathway inhibitor 1
mm39_v1_chr16_-_23807602_23807602	0.7675215406675028	AAGUGCU	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chr12_-_101879375_101879526	0.6972575250109272	AAGUGCU	ENSMUST00000177536.8|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11	ENSMUST00000176728.2|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11	ENSMUST00000021605.14|Trip11|ENSMUSG00000021188.15|thyroid hormone receptor interactor 11
mm39_v1_chr6_-_90787100_90787142	0.6726653499152081	AAGUGCU	ENSMUST00000101151.10|Iqsec1|ENSMUSG00000034312.16|IQ motif and Sec7 domain 1
mm39_v1_chr10_-_66932685_66932738	0.6724618381014854	AAGUGCU	ENSMUST00000020023.9|Reep3|ENSMUSG00000019873.9|receptor accessory protein 3
mm39_v1_chr5_+_98328723_98328837	0.6343294498486587	AAGUGCU	ENSMUST00000112959.4|Prdm8|ENSMUSG00000035456.10|PR domain containing 8
mm39_v1_chr12_-_72455708_72455828	0.6336786372199302	AAGUGCU	ENSMUST00000078505.14|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chr17_-_16046780_16046853	0.6218470295659628	AAGUGCU	ENSMUST00000232638.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B	ENSMUST00000170578.3|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr11_+_98727611_98727654	0.6055500989817354	AAGUGCU	ENSMUST00000107479.3|Rapgefl1|ENSMUSG00000038020.6|Rap guanine nucleotide exchange factor (GEF)-like 1
mm39_v1_chr17_+_87061117_87061137	0.5935659955502657	AAGUGCU	ENSMUST00000024954.11|Epas1|ENSMUSG00000024140.11|endothelial PAS domain protein 1
mm39_v1_chr16_+_57173456_57173480	0.5895256512557233	AAGUGCU	ENSMUST00000159816.8|Filip1l|ENSMUSG00000043336.15|filamin A interacting protein 1-like
mm39_v1_chr8_-_27664651_27664680	0.5892613503123598	AAGUGCU	ENSMUST00000054212.7|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000033878.14|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)	ENSMUST00000209377.2|Rab11fip1|ENSMUSG00000031488.15|RAB11 family interacting protein 1 (class I)
mm39_v1_chr14_+_58308004_58308004	0.5754815677400279	AAGUGCU	ENSMUST00000165526.9|Fgf9|ENSMUSG00000021974.16|fibroblast growth factor 9
mm39_v1_chr4_-_132149780_132149808	0.5723511402902868	AAGUGCU	ENSMUST00000102568.10|Phactr4|ENSMUSG00000066043.14|phosphatase and actin regulator 4
mm39_v1_chr17_-_48716756_48716934	0.5628919263548476	AAGUGCU	ENSMUST00000160319.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000159535.2|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000078800.13|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000046719.14|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000162460.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha
mm39_v1_chr15_-_66985760_66985841	0.5555291205736888	AAGUGCU	ENSMUST00000092640.6|St3gal1|ENSMUSG00000013846.11|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm39_v1_chr2_+_179684288_179684355	0.5336827192189056	AAGUGCU	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chr4_+_32982981_32983155	0.5314840245262551	AAGUGCU	ENSMUST00000098190.10|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D	ENSMUST00000029946.14|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D
mm39_v1_chr11_-_103158190_103158298	0.5213432144306883	AAGUGCU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr18_-_46331877_46331891	0.5178423217278504	AAGUGCU	ENSMUST00000167364.9|Trim36|ENSMUSG00000033949.13|tripartite motif-containing 36
mm39_v1_chr10_+_128295159_128295197	0.5043674713574691	AAGUGCU	ENSMUST00000026433.9|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000099131.11|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000105235.10|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm39_v1_chr7_-_63588610_63588704	0.5036452692318165	AAGUGCU	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr3_-_31023547_31023573	0.49563955767323165	AAGUGCU	ENSMUST00000064718.12|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000177992.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000129817.9|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000168645.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000108255.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000099163.5|Phc3|ENSMUSG00000037652.16|polyhomeotic 3
mm39_v1_chr9_+_59658156_59658205	0.49563931861308996	AAGUGCU	ENSMUST00000136740.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000135298.8|Myo9a|ENSMUSG00000039585.16|myosin IXa	ENSMUST00000128341.2|Myo9a|ENSMUSG00000039585.16|myosin IXa
mm39_v1_chr2_-_153083322_153083346	0.4912276148690334	AAGUGCU	ENSMUST00000056924.14|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr9_+_27702243_27702299	0.484043614254866	AAGUGCU	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chr7_-_29204812_29204898	0.47878295132267884	AAGUGCU	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr12_+_71062733_71062837	0.47659563633165325	AAGUGCU	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr5_-_21906330_21906402	0.46430943845831885	AAGUGCU	ENSMUST00000115217.8|Napepld|ENSMUSG00000044968.17|N-acyl phosphatidylethanolamine phospholipase D	ENSMUST00000060899.9|Napepld|ENSMUSG00000044968.17|N-acyl phosphatidylethanolamine phospholipase D
mm39_v1_chr16_-_92622972_92623037	0.4474270613359726	AAGUGCU	ENSMUST00000023673.14|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr3_+_96465265_96465284	0.43826902891122954	AAGUGCU	ENSMUST00000074519.13|Txnip|ENSMUSG00000038393.15|thioredoxin interacting protein	ENSMUST00000049093.8|Txnip|ENSMUSG00000038393.15|thioredoxin interacting protein
mm39_v1_chr16_-_16377982_16378114	0.4291476349282919	AAGUGCU	ENSMUST00000161861.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr10_+_93983844_93983885	0.42335713221497345	AAGUGCU	ENSMUST00000105290.9|Nr2c1|ENSMUSG00000005897.15|nuclear receptor subfamily 2, group C, member 1
mm39_v1_chr6_+_86826470_86826577	0.41789639153380076	AAGUGCU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr10_-_5872386_5872405	0.4177570893144623	AAGUGCU	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr7_-_46608193_46608275	0.41315929116968025	AAGUGCU	ENSMUST00000094398.13|Uevld|ENSMUSG00000043262.17|UEV and lactate/malate dehyrogenase domains
mm39_v1_chr15_-_103248512_103248527	0.40834166685715767	AAGUGCU	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr13_-_111945499_111945552	0.40695506063352505	AAGUGCU	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr11_+_117545618_117545655	0.40559666857070525	AAGUGCU	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr7_+_123582021_123582092	0.3984594532104893	AAGUGCU	ENSMUST00000106437.2|Hs3st4|ENSMUSG00000078591.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 4
mm39_v1_chr11_-_86884507_86884538	0.39627317050661526	AAGUGCU	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr3_+_90161470_90161640	0.39388934816829196	AAGUGCU	ENSMUST00000029545.15|Crtc2|ENSMUSG00000027936.19|CREB regulated transcription coactivator 2
mm39_v1_chr4_-_3938352_3938401	0.383444505646016	AAGUGCU	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chrX_-_47297436_47297568	0.3830307239564813	AAGUGCU	ENSMUST00000037960.11|Zdhhc9|ENSMUSG00000036985.13|zinc finger, DHHC domain containing 9
mm39_v1_chr5_-_90514360_90514469	0.3764068396357297	AAGUGCU	ENSMUST00000168058.7|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17	ENSMUST00000014421.15|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr1_+_131935342_131935373	0.37527224162109435	AAGUGCU	ENSMUST00000086556.12|Elk4|ENSMUSG00000026436.16|ELK4, member of ETS oncogene family
mm39_v1_chr3_-_133250129_133250174	0.3750418411408002	AAGUGCU	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr13_+_31809774_31809799	0.37490248112166824	AAGUGCU	ENSMUST00000042054.3|Foxf2|ENSMUSG00000038402.3|forkhead box F2
mm39_v1_chrX_-_20157966_20158078	0.3722500813333242	AAGUGCU	ENSMUST00000115393.3|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7	ENSMUST00000072451.11|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm39_v1_chr5_-_25703700_25703841	0.36639861056625894	AAGUGCU	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr5_+_64960705_64960731	0.36594476554291966	AAGUGCU	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr14_-_25769457_25769513	0.3647993813840725	AAGUGCU	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chr8_+_23349543_23349570	0.361723841005079	AAGUGCU	ENSMUST00000238975.2|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000110696.8|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000044331.7|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A
mm39_v1_chr8_+_47192767_47192829	0.3546785602367928	AAGUGCU	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr13_-_54209669_54209724	0.3515403541178286	AAGUGCU	ENSMUST00000021932.6|Drd1|ENSMUSG00000021478.7|dopamine receptor D1	ENSMUST00000221470.2|Drd1|ENSMUSG00000021478.7|dopamine receptor D1
mm39_v1_chr2_+_96148418_96148561	0.34325697908049846	AAGUGCU	ENSMUST00000135431.8|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C	ENSMUST00000162807.9|Lrrc4c|ENSMUSG00000050587.15|leucine rich repeat containing 4C
mm39_v1_chr10_+_110581293_110581433	0.3385246428345931	AAGUGCU	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr9_+_30941924_30941997	0.33821322156784817	AAGUGCU	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr9_-_123680927_123680974	0.33632105639314064	AAGUGCU	ENSMUST00000184082.3|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1	ENSMUST00000167595.9|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1
mm39_v1_chr15_+_100513230_100513230	0.3351998529886091	AAGUGCU	ENSMUST00000000356.10|Dazap2|ENSMUSG00000000346.10|DAZ associated protein 2
mm39_v1_chr14_-_104081827_104081839	0.3301903503932313	AAGUGCU	ENSMUST00000022718.11|Ednrb|ENSMUSG00000022122.16|endothelin receptor type B
mm39_v1_chr5_-_110957933_110957979	0.3273639172788323	AAGUGCU	ENSMUST00000031490.11|Ulk1|ENSMUSG00000029512.12|unc-51 like kinase 1
mm39_v1_chrX_-_77627486_77627508	0.323869594457743	AAGUGCU	ENSMUST00000114025.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1	ENSMUST00000134602.8|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1	ENSMUST00000114024.9|Prrg1|ENSMUSG00000047996.17|proline rich Gla (G-carboxyglutamic acid) 1
mm39_v1_chr2_-_37320848_37320931	0.32031714244589143	AAGUGCU	ENSMUST00000053098.6|Zbtb6|ENSMUSG00000066798.4|zinc finger and BTB domain containing 6
mm39_v1_chr13_+_54519161_54519173	0.3180397086937892	AAGUGCU	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr6_-_83418656_83418666	0.3172537383553756	AAGUGCU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr11_-_5331734_5331745	0.3077084228776464	AAGUGCU	ENSMUST00000172492.8|Znrf3|ENSMUSG00000041961.15|zinc and ring finger 3
mm39_v1_chr1_+_6284823_6284907	0.2986267374505885	AAGUGCU	ENSMUST00000027040.13|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chr4_-_53159885_53159900	0.29776367198014303	AAGUGCU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr5_+_138083345_138083410	0.29385142235409767	AAGUGCU	ENSMUST00000019660.11|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1	ENSMUST00000066617.12|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1	ENSMUST00000110963.8|Zkscan1|ENSMUSG00000029729.13|zinc finger with KRAB and SCAN domains 1
mm39_v1_chr5_+_137517140_137517140	0.2932094996063459	AAGUGCU	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr11_-_103303480_103303537	0.29015033278567015	AAGUGCU	ENSMUST00000041272.10|Plekhm1|ENSMUSG00000034247.10|pleckstrin homology domain containing, family M (with RUN domain) member 1
mm39_v1_chr6_+_122796847_122796897	0.2899363276148309	AAGUGCU	ENSMUST00000003238.14|Foxj2|ENSMUSG00000003154.16|forkhead box J2
mm39_v1_chr8_-_127320685_127320736	0.2876696771519831	AAGUGCU	ENSMUST00000054960.9|Irf2bp2|ENSMUSG00000051495.9|interferon regulatory factor 2 binding protein 2
mm39_v1_chr5_-_123887434_123887483	0.2841350120247467	AAGUGCU	ENSMUST00000182955.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182489.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000183147.9|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000050827.14|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000057795.12|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000111515.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2	ENSMUST00000182309.8|Rsrc2|ENSMUSG00000029422.16|arginine/serine-rich coiled-coil 2
mm39_v1_chr4_-_128699838_128699966	0.2795807015168019	AAGUGCU	ENSMUST00000106072.9|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362	ENSMUST00000170934.3|Zfp362|ENSMUSG00000028799.16|zinc finger protein 362
mm39_v1_chr10_+_80972089_80972105	0.27957418756794833	AAGUGCU	ENSMUST00000048128.15|Zbtb7a|ENSMUSG00000035011.16|zinc finger and BTB domain containing 7a
mm39_v1_chr11_+_70453806_70453896	0.279571430151671	AAGUGCU	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr5_-_136596299_136596390	0.2792187898180785	AAGUGCU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr6_+_114620054_114620066	0.2783567487904761	AAGUGCU	ENSMUST00000032457.17|Atg7|ENSMUSG00000030314.17|autophagy related 7
mm39_v1_chr2_+_93472657_93472733	0.2744891520134725	AAGUGCU	ENSMUST00000042078.10|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4	ENSMUST00000111254.2|Alx4|ENSMUSG00000040310.13|aristaless-like homeobox 4
mm39_v1_chr3_-_57755500_57755519	0.2730853218116191	AAGUGCU	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr4_+_136013372_136013425	0.2697968969295458	AAGUGCU	ENSMUST00000069195.5|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46	ENSMUST00000130658.2|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr9_+_107217786_107217848	0.25997166905630387	AAGUGCU	ENSMUST00000042581.4|6430571L13Rik|ENSMUSG00000037977.7|RIKEN cDNA 6430571L13 gene
mm39_v1_chr4_-_135749032_135749074	0.2588932531124781	AAGUGCU	ENSMUST00000030427.6|Eloa|ENSMUSG00000028668.6|elongin A
mm39_v1_chr5_+_147367237_147367355	0.2540049115490881	AAGUGCU	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr15_-_64184485_64184537	0.2508355746875194	AAGUGCU	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr11_+_115921129_115921215	0.24870852567201202	AAGUGCU	ENSMUST00000021116.12|Unk|ENSMUSG00000020770.14|unkempt family zinc finger	ENSMUST00000106452.2|Unk|ENSMUSG00000020770.14|unkempt family zinc finger
mm39_v1_chr12_+_38830081_38830116	0.2445600048126013	AAGUGCU	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr5_-_143098726_143098749	0.240481286910016	AAGUGCU	ENSMUST00000200607.5|Rnf216|ENSMUSG00000045078.13|ring finger protein 216	ENSMUST00000053498.13|Rnf216|ENSMUSG00000045078.13|ring finger protein 216
mm39_v1_chr14_-_57983511_57983604	0.2393436974891235	AAGUGCU	ENSMUST00000173990.8|Lats2|ENSMUSG00000021959.17|large tumor suppressor 2	ENSMUST00000022531.14|Lats2|ENSMUSG00000021959.17|large tumor suppressor 2
mm39_v1_chr16_+_8647959_8647966	0.23553110911794034	AAGUGCU	ENSMUST00000023150.7|1810013L24Rik|ENSMUSG00000022507.7|RIKEN cDNA 1810013L24 gene
mm39_v1_chr2_-_166904902_166904967	0.23015285502970567	AAGUGCU	ENSMUST00000048988.14|Znfx1|ENSMUSG00000039501.15|zinc finger, NFX1-type containing 1
mm39_v1_chr11_-_101117237_101117289	0.2295681279729732	AAGUGCU	ENSMUST00000100417.3|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107285.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107284.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit
mm39_v1_chr19_-_14575395_14575451	0.22528521020804135	AAGUGCU	ENSMUST00000052011.15|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4	ENSMUST00000167776.3|Tle4|ENSMUSG00000024642.18|transducin-like enhancer of split 4
mm39_v1_chr9_-_116004265_116004333	0.22198098931161203	AAGUGCU	ENSMUST00000061101.12|Tgfbr2|ENSMUSG00000032440.14|transforming growth factor, beta receptor II
mm39_v1_chr8_-_84874468_84874571	0.2213142018678846	AAGUGCU	ENSMUST00000117424.9|Cc2d1a|ENSMUSG00000036686.17|coiled-coil and C2 domain containing 1A	ENSMUST00000040383.9|Cc2d1a|ENSMUSG00000036686.17|coiled-coil and C2 domain containing 1A
mm39_v1_chr17_-_43978056_43978105	0.21571006517160507	AAGUGCU	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr5_-_76452365_76452398	0.2076292692818777	AAGUGCU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr7_+_100355798_100355909	0.20527408579343728	AAGUGCU	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr5_+_28522150_28522217	0.20522618305590407	AAGUGCU	ENSMUST00000114884.8|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000059644.13|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33	ENSMUST00000030920.6|Rbm33|ENSMUSG00000048271.15|RNA binding motif protein 33
mm39_v1_chr1_-_92107971_92108063	0.2045793866517612	AAGUGCU	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr4_+_53631460_53631574	0.20383276138171613	AAGUGCU	ENSMUST00000132151.8|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000159415.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000163067.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like
mm39_v1_chr14_-_45895599_45895640	0.19952480539555092	AAGUGCU	ENSMUST00000111828.4|Ddhd1|ENSMUSG00000037697.20|DDHD domain containing 1	ENSMUST00000051310.13|Ddhd1|ENSMUSG00000037697.20|DDHD domain containing 1
mm39_v1_chr5_+_77413282_77413396	0.19825091816154114	AAGUGCU	ENSMUST00000080359.12|Rest|ENSMUSG00000029249.16|RE1-silencing transcription factor
mm39_v1_chr16_+_42727926_42728047	0.19575183871959212	AAGUGCU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr14_-_103336990_103337007	0.19471944945490893	AAGUGCU	ENSMUST00000022720.15|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3	ENSMUST00000144141.8|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3
mm39_v1_chr9_-_44792575_44792621	0.19382432147584738	AAGUGCU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr19_+_41471067_41471128	0.1894665253323184	AAGUGCU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr1_-_152642032_152642069	0.1876893896140646	AAGUGCU	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr1_+_130645056_130645070	0.18764750247625572	AAGUGCU	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr15_+_38869415_38869443	0.18383470132521343	AAGUGCU	ENSMUST00000179165.9|Fzd6|ENSMUSG00000022297.16|frizzled class receptor 6
mm39_v1_chr13_-_47083194_47083276	0.18330195534657237	AAGUGCU	ENSMUST00000056978.8|Kif13a|ENSMUSG00000021375.12|kinesin family member 13A
mm39_v1_chr7_-_97958679_97958745	0.1827806035950158	AAGUGCU	ENSMUST00000033020.14|Acer3|ENSMUSG00000030760.15|alkaline ceramidase 3
mm39_v1_chr10_-_8761777_8761821	0.18200009879526483	AAGUGCU	ENSMUST00000015449.6|Sash1|ENSMUSG00000015305.7|SAM and SH3 domain containing 1
mm39_v1_chr12_-_79343040_79343086	0.17783242180323086	AAGUGCU	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr4_+_55350043_55350083	0.1766780617228688	AAGUGCU	ENSMUST00000030134.9|Rad23b|ENSMUSG00000028426.11|RAD23 homolog B, nucleotide excision repair protein
mm39_v1_chr2_-_19002932_19002971	0.1738878409727564	AAGUGCU	ENSMUST00000006912.12|Pip4k2a|ENSMUSG00000026737.13|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm39_v1_chr5_+_139366336_139366463	0.17377715353174628	AAGUGCU	ENSMUST00000051293.8|Gpr146|ENSMUSG00000044197.9|G protein-coupled receptor 146
mm39_v1_chr6_-_53045546_53045640	0.17250090108475902	AAGUGCU	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr11_+_29323618_29323777	0.17225095779152613	AAGUGCU	ENSMUST00000040182.13|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A	ENSMUST00000109477.2|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A
mm39_v1_chr14_-_65499835_65499941	0.17018506830483524	AAGUGCU	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chr12_+_16944896_16944904	0.16693144148168518	AAGUGCU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr2_-_57004933_57005050	0.16538064464038824	AAGUGCU	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr17_+_26934617_26934698	0.16423277332323713	AAGUGCU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr3_+_130904000_130904120	0.16194231866674996	AAGUGCU	ENSMUST00000029611.14|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000106341.9|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000066849.13|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1
mm39_v1_chr3_-_100396635_100396652	0.16135313081379407	AAGUGCU	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr1_-_165287999_165288056	0.16049156180332005	AAGUGCU	ENSMUST00000027856.13|Dcaf6|ENSMUSG00000026571.13|DDB1 and CUL4 associated factor 6
mm39_v1_chr5_+_43390513_43390580	0.16030246874251058	AAGUGCU	ENSMUST00000166713.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000169035.8|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2	ENSMUST00000114065.9|Cpeb2|ENSMUSG00000039782.16|cytoplasmic polyadenylation element binding protein 2
mm39_v1_chr13_+_47196975_47197067	0.16009959111041772	AAGUGCU	ENSMUST00000037025.16|Kdm1b|ENSMUSG00000038080.18|lysine (K)-specific demethylase 1B	ENSMUST00000143868.2|Kdm1b|ENSMUSG00000038080.18|lysine (K)-specific demethylase 1B
mm39_v1_chr11_+_83855245_83855304	0.1599943637654343	AAGUGCU	ENSMUST00000049714.15|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000092834.12|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000183714.8|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000183456.8|Synrg|ENSMUSG00000034940.16|synergin, gamma
mm39_v1_chr2_+_68691778_68691854	0.15967902402156062	AAGUGCU	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr6_-_56774622_56774741	0.15920465647622273	AAGUGCU	ENSMUST00000114323.8|Kbtbd2|ENSMUSG00000059486.12|kelch repeat and BTB (POZ) domain containing 2
mm39_v1_chr4_+_124696336_124696381	0.15498043978018541	AAGUGCU	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr4_+_135899678_135899738	0.15424437127113608	AAGUGCU	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr11_+_77576981_77577005	0.1533230852408699	AAGUGCU	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr12_+_52746158_52746186	0.15323862679931563	AAGUGCU	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr5_-_66775979_66776056	0.1502627210958943	AAGUGCU	ENSMUST00000162382.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159786.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000162349.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000087256.12|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160103.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160870.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr5_-_135573962_135573982	0.1483277828551413	AAGUGCU	ENSMUST00000060311.12|Hip1|ENSMUSG00000039959.14|huntingtin interacting protein 1
mm39_v1_chr11_-_104333059_104333117	0.14305379929901696	AAGUGCU	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr16_-_38533597_38533647	0.13836344915032264	AAGUGCU	ENSMUST00000023487.5|Arhgap31|ENSMUSG00000022799.5|Rho GTPase activating protein 31
mm39_v1_chr17_+_73414977_73415075	0.13495290333318596	AAGUGCU	ENSMUST00000130574.4|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000149064.9|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000067545.8|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1
mm39_v1_chr11_-_50183129_50183191	0.13445814078914173	AAGUGCU	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr15_-_82796308_82796390	0.13362370485015776	AAGUGCU	ENSMUST00000109510.10|Tcf20|ENSMUSG00000041852.16|transcription factor 20	ENSMUST00000048966.7|Tcf20|ENSMUSG00000041852.16|transcription factor 20
mm39_v1_chr10_+_116137277_116137333	0.13361670404779785	AAGUGCU	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr15_+_78993111_78993186	0.12818202477164295	AAGUGCU	ENSMUST00000040320.10|Micall1|ENSMUSG00000033039.11|microtubule associated monooxygenase, calponin and LIM domain containing -like 1
mm39_v1_chr6_-_116170389_116170462	0.12796669789323148	AAGUGCU	ENSMUST00000088896.10|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr3_+_95566082_95566168	0.1275095371016398	AAGUGCU	ENSMUST00000037947.15|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1	ENSMUST00000178686.2|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1
mm39_v1_chr11_-_86698484_86698572	0.12723275453744226	AAGUGCU	ENSMUST00000018569.14|Dhx40|ENSMUSG00000018425.19|DEAH (Asp-Glu-Ala-His) box polypeptide 40
mm39_v1_chr15_+_95688712_95688755	0.12630740586583153	AAGUGCU	ENSMUST00000071874.8|Ano6|ENSMUSG00000064210.8|anoctamin 6
mm39_v1_chr13_+_14238361_14238407	0.12586224725947054	AAGUGCU	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr11_+_87482971_87483055	0.12466646610380866	AAGUGCU	ENSMUST00000103179.10|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4	ENSMUST00000092802.12|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4	ENSMUST00000146871.8|Mtmr4|ENSMUSG00000018401.18|myotubularin related protein 4
mm39_v1_chr19_+_8797330_8797398	0.12314571767999972	AAGUGCU	ENSMUST00000096753.5|Hnrnpul2|ENSMUSG00000071659.5|heterogeneous nuclear ribonucleoprotein U-like 2
mm39_v1_chr16_-_97723753_97723833	0.12117703214964473	AAGUGCU	ENSMUST00000170757.3|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2
mm39_v1_chr7_+_58878490_58878518	0.12094480252733107	AAGUGCU	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr19_-_10217968_10218125	0.12071506393941468	AAGUGCU	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr11_-_70578744_70578774	0.12062679154843704	AAGUGCU	ENSMUST00000108545.9|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2	ENSMUST00000120261.8|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2
mm39_v1_chr6_+_31375670_31375795	0.12033750682787643	AAGUGCU	ENSMUST00000026699.15|Mkln1|ENSMUSG00000025609.16|muskelin 1, intracellular mediator containing kelch motifs
mm39_v1_chr6_-_85351524_85351546	0.11870485694404699	AAGUGCU	ENSMUST00000060837.10|Rab11fip5|ENSMUSG00000051343.12|RAB11 family interacting protein 5 (class I)
mm39_v1_chr1_-_165830160_165830182	0.11654843145444697	AAGUGCU	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr18_+_64387428_64387457	0.1160708757612328	AAGUGCU	ENSMUST00000025477.15|St8sia3|ENSMUSG00000056812.15|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm39_v1_chr7_-_67022520_67022609	0.11606421746849727	AAGUGCU	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr2_-_38955452_38955513	0.11407517113302082	AAGUGCU	ENSMUST00000112850.9|Golga1|ENSMUSG00000026754.17|golgi autoantigen, golgin subfamily a, 1
mm39_v1_chr16_-_3690243_3690275	0.11291868184690575	AAGUGCU	ENSMUST00000090522.5|Zfp597|ENSMUSG00000039789.8|zinc finger protein 597
mm39_v1_chr1_+_167516771_167516806	0.10966223010062981	AAGUGCU	ENSMUST00000111377.8|Lmx1a|ENSMUSG00000026686.15|LIM homeobox transcription factor 1 alpha
mm39_v1_chr1_-_88629843_88629943	0.10718667781335874	AAGUGCU	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chr13_-_58261406_58261469	0.10627178813069844	AAGUGCU	ENSMUST00000160860.9|Klhl3|ENSMUSG00000014164.16|kelch-like 3
mm39_v1_chr10_+_70080913_70080970	0.10452510522223113	AAGUGCU	ENSMUST00000046807.7|Slc16a9|ENSMUSG00000037762.7|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm39_v1_chr10_-_59838878_59838958	0.10350153647337462	AAGUGCU	ENSMUST00000182912.2|Anapc16|ENSMUSG00000020107.11|anaphase promoting complex subunit 16	ENSMUST00000020307.11|Anapc16|ENSMUSG00000020107.11|anaphase promoting complex subunit 16	ENSMUST00000182898.8|Anapc16|ENSMUSG00000020107.11|anaphase promoting complex subunit 16
mm39_v1_chr8_-_71249630_71249662	0.10265289445431519	AAGUGCU	ENSMUST00000166004.3|Mast3|ENSMUSG00000031833.11|microtubule associated serine/threonine kinase 3
mm39_v1_chr2_-_33358513_33358582	0.10061701295762515	AAGUGCU	ENSMUST00000113156.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000028125.12|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000126442.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43
mm39_v1_chr11_+_35660288_35660311	0.09958805381371957	AAGUGCU	ENSMUST00000018990.8|Pank3|ENSMUSG00000018846.9|pantothenate kinase 3
mm39_v1_chr12_+_3476857_3476925	0.09869820276287965	AAGUGCU	ENSMUST00000111215.10|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000092003.12|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000144247.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000153102.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2
mm39_v1_chr14_-_105414294_105414361	0.09843558200771402	AAGUGCU	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr12_+_84498196_84498292	0.09498365726062612	AAGUGCU	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chr12_-_100995242_100995302	0.0948423344078575	AAGUGCU	ENSMUST00000085096.10|Ccdc88c|ENSMUSG00000021182.17|coiled-coil domain containing 88C
mm39_v1_chr2_-_150531280_150531280	0.09102748435450511	AAGUGCU	ENSMUST00000046095.10|Vsx1|ENSMUSG00000033080.10|visual system homeobox 1
mm39_v1_chr3_+_157653051_157653148	0.08959120130947938	AAGUGCU	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr19_+_3817396_3817523	0.08674807397344075	AAGUGCU	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr4_+_59805829_59805914	0.0867171075608338	AAGUGCU	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr4_+_6191084_6191122	0.08561060957346778	AAGUGCU	ENSMUST00000029907.6|Ubxn2b|ENSMUSG00000028243.6|UBX domain protein 2B
mm39_v1_chr6_-_148797648_148797735	0.08432880164207034	AAGUGCU	ENSMUST00000072324.12|Caprin2|ENSMUSG00000030309.17|caprin family member 2	ENSMUST00000111569.9|Caprin2|ENSMUSG00000030309.17|caprin family member 2
mm39_v1_chr11_-_51891259_51891311	0.08349826984235133	AAGUGCU	ENSMUST00000020657.13|Ube2b|ENSMUSG00000020390.13|ubiquitin-conjugating enzyme E2B
mm39_v1_chr12_+_8821317_8821328	0.08291603732134413	AAGUGCU	ENSMUST00000020911.14|Sdc1|ENSMUSG00000020592.15|syndecan 1
mm39_v1_chr11_-_72302520_72302573	0.08117294563636568	AAGUGCU	ENSMUST00000108500.8|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2	ENSMUST00000050226.7|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2
mm39_v1_chr15_-_57998443_57998491	0.08112835229072919	AAGUGCU	ENSMUST00000038194.5|Atad2|ENSMUSG00000022360.9|ATPase family, AAA domain containing 2
mm39_v1_chr4_+_119396849_119396912	0.08028379531207651	AAGUGCU	ENSMUST00000044564.15|Foxj3|ENSMUSG00000032998.17|forkhead box J3	ENSMUST00000162267.8|Foxj3|ENSMUSG00000032998.17|forkhead box J3	ENSMUST00000106310.9|Foxj3|ENSMUSG00000032998.17|forkhead box J3	ENSMUST00000138845.9|Foxj3|ENSMUSG00000032998.17|forkhead box J3
mm39_v1_chr2_+_127967951_127967976	0.07984004862652351	AAGUGCU	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr8_+_11808349_11808375	0.07962756097401931	AAGUGCU	ENSMUST00000074856.13|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)	ENSMUST00000098938.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr6_-_28261881_28261942	0.07869718232980497	AAGUGCU	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr11_-_97466035_97466061	0.07783900504714913	AAGUGCU	ENSMUST00000107596.9|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238314.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238597.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1	ENSMUST00000238342.2|Srcin1|ENSMUSG00000038453.18|SRC kinase signaling inhibitor 1
mm39_v1_chr13_+_43551851_43551878	0.07636624047829033	AAGUGCU	ENSMUST00000071926.5|Nol7|ENSMUSG00000063200.5|nucleolar protein 7	ENSMUST00000222499.2|Nol7|ENSMUSG00000063200.5|nucleolar protein 7
mm39_v1_chr2_-_35994072_35994085	0.07628250216651301	AAGUGCU	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr18_-_79152504_79152606	0.07574912371858662	AAGUGCU	ENSMUST00000025430.11|Setbp1|ENSMUSG00000024548.12|SET binding protein 1
mm39_v1_chr8_-_80021556_80021591	0.07560347445576777	AAGUGCU	ENSMUST00000048718.4|Mmaa|ENSMUSG00000037022.4|methylmalonic aciduria (cobalamin deficiency) type A
mm39_v1_chr17_+_25407352_25407392	0.07508016182176781	AAGUGCU	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr10_-_30531768_30531807	0.07468271514509953	AAGUGCU	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr4_-_44167509_44167609	0.0736828634098682	AAGUGCU	ENSMUST00000098098.9|Rnf38|ENSMUSG00000035696.16|ring finger protein 38
mm39_v1_chr2_-_125565307_125565457	0.07355072745535082	AAGUGCU	ENSMUST00000042246.14|Shc4|ENSMUSG00000035109.15|SHC (Src homology 2 domain containing) family, member 4
mm39_v1_chr1_+_104696235_104696254	0.072178672209956	AAGUGCU	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr13_-_96678987_96679032	0.07214361047179028	AAGUGCU	ENSMUST00000022172.12|Polk|ENSMUSG00000021668.16|polymerase (DNA directed), kappa
mm39_v1_chr4_+_135413593_135413612	0.07115128025736556	AAGUGCU	ENSMUST00000074408.7|Ifnlr1|ENSMUSG00000062157.7|interferon lambda receptor 1
mm39_v1_chr16_+_17051423_17051528	0.07048528159482817	AAGUGCU	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr10_+_128212953_128213024	0.06841970955268498	AAGUGCU	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr12_+_105750952_105751131	0.06832819010551638	AAGUGCU	ENSMUST00000109901.9|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000168186.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000163473.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170540.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000166735.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170002.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha
mm39_v1_chr6_+_146626455_146626502	0.06504836510123299	AAGUGCU	ENSMUST00000001675.14|Stk38l|ENSMUSG00000001630.14|serine/threonine kinase 38 like
mm39_v1_chr18_+_70701260_70701469	0.06461336395418366	AAGUGCU	ENSMUST00000074058.11|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2	ENSMUST00000114946.4|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2
mm39_v1_chr1_+_180720666_180720679	0.06437679846387158	AAGUGCU	ENSMUST00000085797.6|Lefty2|ENSMUSG00000066652.6|left-right determination factor 2
mm39_v1_chr2_+_173501553_173501664	0.063876144009176	AAGUGCU	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr5_-_143717970_143718072	0.06285964667443718	AAGUGCU	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr6_+_141194886_141194995	0.06176062335362549	AAGUGCU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr2_+_129434834_129434860	0.061525220369319705	AAGUGCU	ENSMUST00000103203.8|Sirpa|ENSMUSG00000037902.19|signal-regulatory protein alpha
mm39_v1_chr11_-_100628979_100629041	0.06144948060950451	AAGUGCU	ENSMUST00000155500.2|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family	ENSMUST00000107364.8|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family	ENSMUST00000019317.12|Rab5c|ENSMUSG00000019173.12|RAB5C, member RAS oncogene family
mm39_v1_chr6_+_92068361_92068371	0.06029702935692127	AAGUGCU	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr3_+_60408600_60408663	0.05747602742876711	AAGUGCU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr15_-_94487751_94487770	0.0559801391428324	AAGUGCU	ENSMUST00000023087.13|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1	ENSMUST00000152590.2|Twf1|ENSMUSG00000022451.13|twinfilin actin binding protein 1
mm39_v1_chr17_+_78507669_78507687	0.05584952697574804	AAGUGCU	ENSMUST00000112498.3|Crim1|ENSMUSG00000024074.9|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm39_v1_chr16_-_18052937_18053048	0.05463799010661122	AAGUGCU	ENSMUST00000076957.7|Zdhhc8|ENSMUSG00000060166.7|zinc finger, DHHC domain containing 8
mm39_v1_chr4_+_116578117_116578201	0.05453237843609719	AAGUGCU	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr7_-_70010341_70010494	0.053991609808243246	AAGUGCU	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr11_-_34674677_34674727	0.053768896644728836	AAGUGCU	ENSMUST00000093193.12|Dock2|ENSMUSG00000020143.16|dedicator of cyto-kinesis 2	ENSMUST00000101365.9|Dock2|ENSMUSG00000020143.16|dedicator of cyto-kinesis 2
mm39_v1_chr1_-_119765343_119765403	0.0536088469166438	AAGUGCU	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr5_-_64126194_64126247	0.05359928337652149	AAGUGCU	ENSMUST00000154169.4|Rell1|ENSMUSG00000047881.15|RELT-like 1
mm39_v1_chr6_+_47812584_47812660	0.05337307791399479	AAGUGCU	ENSMUST00000079881.11|Zfp398|ENSMUSG00000062519.14|zinc finger protein 398	ENSMUST00000114598.3|Zfp398|ENSMUSG00000062519.14|zinc finger protein 398
mm39_v1_chr2_-_79287095_79287102	0.05237899009860556	AAGUGCU	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr10_+_40225272_40225385	0.051159412905166145	AAGUGCU	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr3_-_84212069_84212116	0.050956776154917345	AAGUGCU	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr9_+_64939695_64939748	0.05025713878156346	AAGUGCU	ENSMUST00000034960.14|Dpp8|ENSMUSG00000032393.16|dipeptidylpeptidase 8
mm39_v1_chr13_-_12121831_12121871	0.05019617454531372	AAGUGCU	ENSMUST00000021750.15|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000170156.3|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac	ENSMUST00000220597.2|Ryr2|ENSMUSG00000021313.17|ryanodine receptor 2, cardiac
mm39_v1_chr13_-_104365310_104365337	0.04965700353006122	AAGUGCU	ENSMUST00000022226.6|Ppwd1|ENSMUSG00000021713.10|peptidylprolyl isomerase domain and WD repeat containing 1
mm39_v1_chr11_+_75570085_75570167	0.04904573289620797	AAGUGCU	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chrX_+_159551009_159551114	0.04758484718315327	AAGUGCU	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr12_-_98703664_98703774	0.047583570092337144	AAGUGCU	ENSMUST00000170188.8|Ptpn21|ENSMUSG00000021009.16|protein tyrosine phosphatase, non-receptor type 21
mm39_v1_chr18_+_32296126_32296249	0.04731554661122374	AAGUGCU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr5_+_8472831_8472906	0.04685374309145505	AAGUGCU	ENSMUST00000066921.10|Slc25a40|ENSMUSG00000054099.12|solute carrier family 25, member 40	ENSMUST00000170496.6|Slc25a40|ENSMUSG00000054099.12|solute carrier family 25, member 40
mm39_v1_chr17_+_27192135_27192193	0.046782131394625816	AAGUGCU	ENSMUST00000120016.3|Zbtb9|ENSMUSG00000079605.6|zinc finger and BTB domain containing 9
mm39_v1_chr13_-_34529157_34529257	0.045464120813473154	AAGUGCU	ENSMUST00000040336.12|Slc22a23|ENSMUSG00000038267.16|solute carrier family 22, member 23
mm39_v1_chr1_-_163141230_163141246	0.04320890936792463	AAGUGCU	ENSMUST00000174397.3|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1	ENSMUST00000075805.13|Prrx1|ENSMUSG00000026586.17|paired related homeobox 1
mm39_v1_chr15_+_80595486_80595541	0.04319354101441062	AAGUGCU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr3_+_88439616_88439703	0.039794287334400755	AAGUGCU	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr9_+_74769166_74769203	0.03966521468364951	AAGUGCU	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr6_-_92160952_92161019	0.038086925271699615	AAGUGCU	ENSMUST00000140438.2|Mrps25|ENSMUSG00000014551.9|mitochondrial ribosomal protein S25
mm39_v1_chrX_-_161426624_161426661	0.03793502700825244	AAGUGCU	ENSMUST00000112334.8|Reps2|ENSMUSG00000040855.16|RALBP1 associated Eps domain containing protein 2
mm39_v1_chr3_+_16237371_16237447	0.037344641876144585	AAGUGCU	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr2_+_132105056_132105190	0.035780314926209075	AAGUGCU	ENSMUST00000110158.8|Cds2|ENSMUSG00000058793.15|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	ENSMUST00000103181.11|Cds2|ENSMUSG00000058793.15|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm39_v1_chr9_-_114393406_114393437	0.03546527000924785	AAGUGCU	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr2_-_181234526_181234596	0.03470839745383933	AAGUGCU	ENSMUST00000108789.9|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B	ENSMUST00000153998.2|Zfp512b|ENSMUSG00000000823.17|zinc finger protein 512B
mm39_v1_chr7_-_35502392_35502433	0.03224283169281475	AAGUGCU	ENSMUST00000187282.3|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000205670.2|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000061586.11|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507
mm39_v1_chr6_-_55658242_55658255	0.03075613022944704	AAGUGCU	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr18_-_10706701_10706771	0.029026125555138022	AAGUGCU	ENSMUST00000002549.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117726.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3	ENSMUST00000117828.9|Abhd3|ENSMUSG00000002475.17|abhydrolase domain containing 3
mm39_v1_chr11_-_69838971_69839034	0.028984466065364145	AAGUGCU	ENSMUST00000179298.3|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000018710.13|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000135437.3|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000141837.9|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4	ENSMUST00000142500.8|Slc2a4|ENSMUSG00000018566.15|solute carrier family 2 (facilitated glucose transporter), member 4
mm39_v1_chr2_-_63014622_63014681	0.028812924620955492	AAGUGCU	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr11_+_105480796_105480857	0.028773720774366875	AAGUGCU	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr5_-_21156766_21156824	0.02761405391770972	AAGUGCU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chrX_-_47543029_47543071	0.025979599520081803	AAGUGCU	ENSMUST00000114958.8|Elf4|ENSMUSG00000031103.13|E74-like factor 4 (ets domain transcription factor)
mm39_v1_chr2_-_119308094_119308186	0.025024441812103098	AAGUGCU	ENSMUST00000110808.2|Ino80|ENSMUSG00000034154.16|INO80 complex subunit	ENSMUST00000049920.14|Ino80|ENSMUSG00000034154.16|INO80 complex subunit
mm39_v1_chr10_-_78427721_78427798	0.024307371134311116	AAGUGCU	ENSMUST00000040580.7|Syde1|ENSMUSG00000032714.7|synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
mm39_v1_chr4_-_151946219_151946333	0.024301814209942523	AAGUGCU	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr16_-_31094095_31094109	0.02408085812746828	AAGUGCU	ENSMUST00000060188.14|Ppp1r2|ENSMUSG00000047714.15|protein phosphatase 1, regulatory inhibitor subunit 2
mm39_v1_chr2_-_104324745_104324809	0.023823135566818025	AAGUGCU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr11_+_70735572_70735642	0.023285874693106334	AAGUGCU	ENSMUST00000076270.13|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000179114.8|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000100928.11|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1
mm39_v1_chr2_-_39116457_39116468	0.022480392303709275	AAGUGCU	ENSMUST00000028087.6|Ppp6c|ENSMUSG00000026753.6|protein phosphatase 6, catalytic subunit
mm39_v1_chr7_+_144450260_144450301	0.02173806074815781	AAGUGCU	ENSMUST00000033389.7|Fgf15|ENSMUSG00000031073.7|fibroblast growth factor 15	ENSMUST00000207229.2|Fgf15|ENSMUSG00000031073.7|fibroblast growth factor 15
mm39_v1_chr14_-_61794330_61794339	0.021419823393210358	AAGUGCU	ENSMUST00000022497.15|Spryd7|ENSMUSG00000021930.15|SPRY domain containing 7
mm39_v1_chr6_+_122851433_122851541	0.01978041282221822	AAGUGCU	ENSMUST00000032477.6|Necap1|ENSMUSG00000030327.9|NECAP endocytosis associated 1
mm39_v1_chr6_+_91955820_91955896	0.019495017405702603	AAGUGCU	ENSMUST00000089334.9|Fgd5|ENSMUSG00000034037.15|FYVE, RhoGEF and PH domain containing 5
mm39_v1_chr18_-_46658957_46659078	0.019490555670164382	AAGUGCU	ENSMUST00000036226.6|Fem1c|ENSMUSG00000033319.6|fem 1 homolog c
mm39_v1_chr16_-_67417768_67417810	0.019144836645793334	AAGUGCU	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr5_+_71857261_71857292	0.018695047202251035	AAGUGCU	ENSMUST00000031122.9|Gabrb1|ENSMUSG00000029212.12|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm39_v1_chr2_-_104647041_104647138	0.018096914396221325	AAGUGCU	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr16_+_33201164_33201206	0.01636932300338428	AAGUGCU	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr10_-_70435114_70435132	0.016233525467773447	AAGUGCU	ENSMUST00000046513.10|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like
mm39_v1_chr1_+_34840785_34840875	0.01557205194548368	AAGUGCU	ENSMUST00000047664.16|Arhgef4|ENSMUSG00000037509.22|Rho guanine nucleotide exchange factor (GEF) 4	ENSMUST00000211073.2|SMIM39|ENSMUSG00000118272.2|novel protein
mm39_v1_chr6_-_116605914_116605965	0.015525822739279436	AAGUGCU	ENSMUST00000079749.6|Zfp422|ENSMUSG00000059878.13|zinc finger protein 422
mm39_v1_chr12_-_118265103_118265162	0.015491755313484713	AAGUGCU	ENSMUST00000222314.2|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4	ENSMUST00000026367.11|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4
mm39_v1_chr15_+_6737853_6737883	0.01538302870783928	AAGUGCU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr1_-_43137768_43137847	0.015064713237832856	AAGUGCU	ENSMUST00000190427.7|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1	ENSMUST00000095014.8|Tgfbrap1|ENSMUSG00000070939.10|transforming growth factor, beta receptor associated protein 1
mm39_v1_chr10_-_7656635_7656687	0.014741047286710501	AAGUGCU	ENSMUST00000124838.2|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1	ENSMUST00000039763.14|Ginm1|ENSMUSG00000040006.14|glycoprotein integral membrane 1
mm39_v1_chr18_+_60659257_60659306	0.014609236283681179	AAGUGCU	ENSMUST00000223984.2|Dctn4|ENSMUSG00000024603.9|dynactin 4	ENSMUST00000025505.7|Dctn4|ENSMUSG00000024603.9|dynactin 4	ENSMUST00000223590.2|Dctn4|ENSMUSG00000024603.9|dynactin 4
mm39_v1_chr14_+_120513076_120513094	0.01414714409625014	AAGUGCU	ENSMUST00000088419.13|Mbnl2|ENSMUSG00000022139.18|muscleblind like splicing factor 2
mm39_v1_chr3_+_89960121_89960178	0.013741343055748947	AAGUGCU	ENSMUST00000160640.8|4933434E20Rik|ENSMUSG00000027942.18|RIKEN cDNA 4933434E20 gene	ENSMUST00000029552.13|4933434E20Rik|ENSMUSG00000027942.18|RIKEN cDNA 4933434E20 gene	ENSMUST00000162114.8|4933434E20Rik|ENSMUSG00000027942.18|RIKEN cDNA 4933434E20 gene	ENSMUST00000068798.13|4933434E20Rik|ENSMUSG00000027942.18|RIKEN cDNA 4933434E20 gene
mm39_v1_chr18_+_89215543_89215572	0.013491318292323575	AAGUGCU	ENSMUST00000037142.13|Cd226|ENSMUSG00000034028.17|CD226 antigen
mm39_v1_chr1_+_139349912_139350120	0.012547200460538139	AAGUGCU	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr19_-_47680528_47680535	0.01221116080161158	AAGUGCU	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr2_-_126517458_126517512	0.011041967827243466	AAGUGCU	ENSMUST00000103227.8|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1	ENSMUST00000110425.9|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1	ENSMUST00000089745.11|Gabpb1|ENSMUSG00000027361.16|GA repeat binding protein, beta 1
mm39_v1_chr17_+_34866090_34866148	0.010866130173506034	AAGUGCU	ENSMUST00000015605.15|Atf6b|ENSMUSG00000015461.16|activating transcription factor 6 beta
mm39_v1_chr6_-_88022172_88022252	0.01020676516678959	AAGUGCU	ENSMUST00000203674.3|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000204126.2|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113596.8|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family	ENSMUST00000113600.10|Rab7|ENSMUSG00000079477.10|RAB7, member RAS oncogene family
mm39_v1_chr15_-_13173736_13173791	0.009657793395532854	AAGUGCU	ENSMUST00000036439.6|Cdh6|ENSMUSG00000039385.6|cadherin 6
mm39_v1_chr18_+_12466876_12467002	0.007442115118422136	AAGUGCU	ENSMUST00000092070.13|Lama3|ENSMUSG00000024421.17|laminin, alpha 3
mm39_v1_chr11_+_76563281_76563296	0.007346280638304079	AAGUGCU	ENSMUST00000056184.2|Bhlha9|ENSMUSG00000044243.4|basic helix-loop-helix family, member a9
mm39_v1_chr18_+_51250748_51250822	0.005622608187055721	AAGUGCU	ENSMUST00000116639.4|Prr16|ENSMUSG00000073565.6|proline rich 16
mm39_v1_chr5_-_114411851_114411868	0.005608884949400464	AAGUGCU	ENSMUST00000044790.12|Foxn4|ENSMUSG00000042002.12|forkhead box N4
mm39_v1_chr17_-_88372671_88372719	0.005261285441539973	AAGUGCU	ENSMUST00000235112.2|Fbxo11|ENSMUSG00000005371.16|F-box protein 11	ENSMUST00000005504.15|Fbxo11|ENSMUSG00000005371.16|F-box protein 11
mm39_v1_chr9_+_57444801_57444860	0.004410275630223653	AAGUGCU	ENSMUST00000093833.6|Fam219b|ENSMUSG00000032305.16|family with sequence similarity 219, member B	ENSMUST00000114200.10|Fam219b|ENSMUSG00000032305.16|family with sequence similarity 219, member B
mm39_v1_chr16_-_32688640_32688741	0.004019121496797217	AAGUGCU	ENSMUST00000089684.10|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000040986.15|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000115105.9|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
mm39_v1_chr7_-_130121191_130121310	0.0026896731163537544	AAGUGCU	ENSMUST00000216011.2|Ate1|ENSMUSG00000030850.18|arginyltransferase 1	ENSMUST00000035458.15|Ate1|ENSMUSG00000030850.18|arginyltransferase 1	ENSMUST00000033139.15|Ate1|ENSMUSG00000030850.18|arginyltransferase 1
mm39_v1_chr11_+_51180747_51180838	0.002480265205351084	AAGUGCU	ENSMUST00000102765.9|Col23a1|ENSMUSG00000063564.14|collagen, type XXIII, alpha 1
mm39_v1_chr14_+_36776775_36776811	0.0024561278363867184	AAGUGCU	ENSMUST00000120052.2|Lrit1|ENSMUSG00000041044.10|leucine-rich repeat, immunoglobulin-like and transmembrane domains 1
mm39_v1_chr9_+_107879700_107879879	0.0022811410907414356	AAGUGCU	ENSMUST00000035214.11|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000176854.7|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000175874.2|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1
mm39_v1_chr6_-_89339581_89339602	0.00224331548538778	AAGUGCU	ENSMUST00000163139.8|Plxna1|ENSMUSG00000030084.12|plexin A1
mm39_v1_chr2_-_34262012_34262056	0.002060807842400834	AAGUGCU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr7_+_100256617_100256815	0.0008767064208800545	AAGUGCU	ENSMUST00000107048.8|Rab6a|ENSMUSG00000030704.15|RAB6A, member RAS oncogene family	ENSMUST00000032946.10|Rab6a|ENSMUSG00000030704.15|RAB6A, member RAS oncogene family
mm39_v1_chr10_+_70276604_70276768	0.0008570900834950269	AAGUGCU	ENSMUST00000173042.9|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C	ENSMUST00000062883.7|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C
mm39_v1_chr7_-_64806164_64806318	0.00046721175342863164	AAGUGCU	ENSMUST00000148459.3|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1	ENSMUST00000119118.8|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1
mm39_v1_chr9_+_98837325_98837344	0.00016794157600749708	AAGUGCU	ENSMUST00000051312.5|Foxl2|ENSMUSG00000050397.5|forkhead box L2
