ISMARA results: CCACAGG

Project

GFI1 WT vs 36n/n vs KD

Navigation

Downloads

Results for CCACAGG

Z-value: 0.27

Motif logo

miRNA associated with seed CCACAGG

Name	miRBASE accession
mmu-miR-140-3p.1 miRBase

Activity profile of CCACAGG motif

Sorted Z-values of CCACAGG motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_117681864 Show fit	0.17	ENSMUST00000064667.9	Rap1b Ensembl NCBI MGI UniProt Show fit	RAS related protein 1b
chr3_-_57559088 Show fit	0.08	ENSMUST00000160959.8	Commd2 Ensembl NCBI MGI UniProt Show fit	COMM domain containing 2
chr18_+_3383230 Show fit	0.07	ENSMUST00000162301.8 ENSMUST00000161317.2	Cul2 Ensembl NCBI MGI UniProt Show fit	cullin 2
chr1_-_131025562 Show fit	0.07	ENSMUST00000016672.11	Mapkapk2 Ensembl NCBI MGI UniProt Show fit	MAP kinase-activated protein kinase 2
chrX_-_141749704 Show fit	0.06	ENSMUST00000041317.3	Ammecr1 Ensembl NCBI MGI UniProt Show fit	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr19_+_53298906 Show fit	0.06	ENSMUST00000003870.15	Mxi1 Ensembl NCBI MGI UniProt Show fit	MAX interactor 1, dimerization protein
chr6_+_108637577 Show fit	0.06	ENSMUST00000032194.11	Bhlhe40 Ensembl NCBI MGI UniProt Show fit	basic helix-loop-helix family, member e40
chr2_+_71617266 Show fit	0.06	ENSMUST00000112101.8 ENSMUST00000028522.10	Itga6 Ensembl NCBI MGI UniProt Show fit	integrin alpha 6
chr3_-_50398027 Show fit	0.06	ENSMUST00000029297.6 ENSMUST00000194462.6	Slc7a11 Ensembl NCBI MGI UniProt Show fit	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
chr6_-_52211882 Show fit	0.05	ENSMUST00000125581.2	Hoxa10 Ensembl NCBI MGI UniProt Show fit	homeobox A10

Showing 1 to 10 of 200 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of CCACAGG

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:2000301	negative regulation of synaptic vesicle exocytosis(GO:2000301)
0.0	0.1	GO:0010157	response to chlorate(GO:0010157)
0.0	0.0	GO:0060574	intestinal epithelial cell maturation(GO:0060574)
0.0	0.0	GO:1900126	negative regulation of hyaluronan biosynthetic process(GO:1900126)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031800	type 3 metabotropic glutamate receptor binding(GO:0031800)

Showing 1 to 1 of 1 entries