mm39_v1_chr3_+_142236086_142236147	0.555949314927463	AACACUG	ENSMUST00000171263.8|Gbp7|ENSMUSG00000040253.16|guanylate binding protein 7	ENSMUST00000045097.11|Gbp7|ENSMUSG00000040253.16|guanylate binding protein 7
mm39_v1_chr12_-_73093953_73093953	0.3662798952374108	AACACUG	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr5_+_108213608_108213634	0.33512908411511655	AACACUG	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr16_+_32427738_32427763	0.31475050429662926	AACACUG	ENSMUST00000023486.15|Tfrc|ENSMUSG00000022797.17|transferrin receptor
mm39_v1_chr8_-_105169621_105169679	0.2485300080179531	AACACUG	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr9_+_113641615_113641685	0.23833259703762813	AACACUG	ENSMUST00000111838.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000166734.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000214522.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000163895.3|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr1_+_156386414_156386619	0.22742910114541387	AACACUG	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr1_-_34882131_34882148	0.19241732751199028	AACACUG	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr11_+_44409775_44409827	0.18985312357296077	AACACUG	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr3_+_41510160_41510195	0.18038114571844302	AACACUG	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr2_+_173918715_173918859	0.16741902073893736	AACACUG	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr18_+_5591864_5591902	0.166260635878783	AACACUG	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr13_+_75987987_75988047	0.15487320757593312	AACACUG	ENSMUST00000022082.8|Glrx|ENSMUSG00000021591.9|glutaredoxin	ENSMUST00000223120.2|Glrx|ENSMUSG00000021591.9|glutaredoxin	ENSMUST00000220523.2|Glrx|ENSMUSG00000021591.9|glutaredoxin
mm39_v1_chr6_+_117840031_117840068	0.15368142689487857	AACACUG	ENSMUST00000172088.8|Zfp239|ENSMUSG00000042097.18|zinc finger protein 239	ENSMUST00000079405.15|Zfp239|ENSMUSG00000042097.18|zinc finger protein 239
mm39_v1_chr15_-_103148239_103148297	0.1519832213160167	AACACUG	ENSMUST00000118152.8|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr13_-_99027544_99027571	0.1493031548135736	AACACUG	ENSMUST00000109399.9|Tnpo1|ENSMUSG00000009470.18|transportin 1
mm39_v1_chr6_+_30401864_30401997	0.1453797993573097	AACACUG	ENSMUST00000068240.13|Klhdc10|ENSMUSG00000029775.15|kelch domain containing 10	ENSMUST00000068259.10|Klhdc10|ENSMUSG00000029775.15|kelch domain containing 10	ENSMUST00000132581.8|Klhdc10|ENSMUSG00000029775.15|kelch domain containing 10
mm39_v1_chr6_+_143112936_143113026	0.1429333773636851	AACACUG	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr13_-_30170031_30170048	0.14078861704932308	AACACUG	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chr2_-_131987008_131987037	0.13680263270330945	AACACUG	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr4_+_97665843_97665870	0.1362008428362442	AACACUG	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr17_+_8384333_8384426	0.13317438314444857	AACACUG	ENSMUST00000097419.10|Cep43|ENSMUSG00000069135.12|centrosomal protein 43	ENSMUST00000024636.15|Cep43|ENSMUSG00000069135.12|centrosomal protein 43
mm39_v1_chr7_-_44465043_44465082	0.13042962553615356	AACACUG	ENSMUST00000107893.9|Atf5|ENSMUSG00000038539.16|activating transcription factor 5
mm39_v1_chr6_+_100810566_100810624	0.12489644149662789	AACACUG	ENSMUST00000063854.7|Ppp4r2|ENSMUSG00000052144.9|protein phosphatase 4, regulatory subunit 2
mm39_v1_chrX_+_100683662_100683714	0.12394228763944076	AACACUG	ENSMUST00000119299.8|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	ENSMUST00000044475.5|Ogt|ENSMUSG00000034160.14|O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
mm39_v1_chr13_-_63713549_63713549	0.12349978740804791	AACACUG	ENSMUST00000021921.11|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr4_-_135221926_135221939	0.12150676902729296	AACACUG	ENSMUST00000102549.10|Nipal3|ENSMUSG00000028803.19|NIPA-like domain containing 3
mm39_v1_chr12_-_31684588_31684679	0.12129923356990956	AACACUG	ENSMUST00000020979.9|Bcap29|ENSMUSG00000020650.16|B cell receptor associated protein 29	ENSMUST00000177962.9|Bcap29|ENSMUSG00000020650.16|B cell receptor associated protein 29
mm39_v1_chr2_-_152256947_152256947	0.12020827833733036	AACACUG	ENSMUST00000099207.5|Zcchc3|ENSMUSG00000074682.5|zinc finger, CCHC domain containing 3
mm39_v1_chr3_+_95836558_95836611	0.12018990817961685	AACACUG	ENSMUST00000165307.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000015893.13|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000169426.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr5_+_137517140_137517140	0.12013167892393287	AACACUG	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr11_+_115310963_115311008	0.11680867902007987	AACACUG	ENSMUST00000106533.8|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2	ENSMUST00000123345.2|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2
mm39_v1_chr12_-_107969853_107969872	0.11344624107526068	AACACUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr7_+_141055135_141055153	0.11094389129047076	AACACUG	ENSMUST00000026585.14|Tspan4|ENSMUSG00000025511.16|tetraspanin 4
mm39_v1_chr7_-_118091135_118091198	0.11075528316880363	AACACUG	ENSMUST00000178344.3|Itpripl2|ENSMUSG00000095115.3|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm39_v1_chr3_-_100396635_100396652	0.10849702626974937	AACACUG	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr1_+_166206666_166206666	0.10561219892558159	AACACUG	ENSMUST00000027846.8|Tada1|ENSMUSG00000026563.14|transcriptional adaptor 1
mm39_v1_chr9_+_106048116_106048153	0.10468030847759156	AACACUG	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr15_-_31531122_31531215	0.10412798245653078	AACACUG	ENSMUST00000090227.6|Marchf6|ENSMUSG00000039100.11|membrane associated ring-CH-type finger 6
mm39_v1_chr18_+_68066328_68066378	0.10406173662877012	AACACUG	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr9_-_96513529_96513670	0.10295856319956784	AACACUG	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr9_+_109704609_109704684	0.10213946618218314	AACACUG	ENSMUST00000094324.8|Cdc25a|ENSMUSG00000032477.15|cell division cycle 25A
mm39_v1_chr17_-_74601769_74601801	0.09647734000843018	AACACUG	ENSMUST00000078459.8|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1	ENSMUST00000232989.2|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1
mm39_v1_chr18_+_69478790_69478882	0.0954615487663198	AACACUG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr9_-_103242096_103242164	0.09322244321602438	AACACUG	ENSMUST00000116517.9|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr4_+_126915104_126915133	0.09217929332938489	AACACUG	ENSMUST00000030623.8|Sfpq|ENSMUSG00000028820.14|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm39_v1_chr5_-_129085610_129085660	0.09177902110191662	AACACUG	ENSMUST00000031378.14|Stx2|ENSMUSG00000029428.14|syntaxin 2
mm39_v1_chr4_-_123644091_123644138	0.09115867927379634	AACACUG	ENSMUST00000102636.4|Akirin1|ENSMUSG00000023075.10|akirin 1
mm39_v1_chrX_-_50106844_50106910	0.0894783105576782	AACACUG	ENSMUST00000053593.8|Rap2c|ENSMUSG00000050029.8|RAP2C, member of RAS oncogene family
mm39_v1_chr6_+_7844759_7844859	0.08917552279348322	AACACUG	ENSMUST00000040159.6|C1galt1|ENSMUSG00000042460.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm39_v1_chr11_-_95956176_95956214	0.08911959387817567	AACACUG	ENSMUST00000100528.5|Ube2z|ENSMUSG00000014349.8|ubiquitin-conjugating enzyme E2Z
mm39_v1_chr2_-_101479846_101479884	0.08905179586058917	AACACUG	ENSMUST00000078494.6|Rag1|ENSMUSG00000061311.7|recombination activating 1	ENSMUST00000160722.8|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein	ENSMUST00000160037.8|Iftap|ENSMUSG00000027165.17|intraflagellar transport associated protein
mm39_v1_chr1_-_165021879_165022007	0.08895221724494426	AACACUG	ENSMUST00000043338.10|Sft2d2|ENSMUSG00000040848.12|SFT2 domain containing 2
mm39_v1_chr2_+_163444214_163444242	0.08677138092564868	AACACUG	ENSMUST00000171696.8|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like	ENSMUST00000109408.10|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like
mm39_v1_chr3_+_137570334_137570374	0.08572385284513995	AACACUG	ENSMUST00000174561.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1	ENSMUST00000173790.8|H2az1|ENSMUSG00000037894.14|H2A.Z variant histone 1
mm39_v1_chr17_+_5891582_5891686	0.08534182245678595	AACACUG	ENSMUST00000002436.11|Snx9|ENSMUSG00000002365.11|sorting nexin 9
mm39_v1_chr4_+_65523223_65523289	0.08392063880950094	AACACUG	ENSMUST00000050850.14|Trim32|ENSMUSG00000051675.14|tripartite motif-containing 32	ENSMUST00000107366.2|Trim32|ENSMUSG00000051675.14|tripartite motif-containing 32
mm39_v1_chr10_-_94780695_94780724	0.08341283964957394	AACACUG	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr12_+_55883101_55883146	0.0817491710640757	AACACUG	ENSMUST00000059250.8|Brms1l|ENSMUSG00000012076.9|breast cancer metastasis-suppressor 1-like
mm39_v1_chr9_-_96993169_96993214	0.08124058433843417	AACACUG	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr2_-_24653059_24653164	0.08114837912517614	AACACUG	ENSMUST00000100348.10|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000041342.12|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000114447.8|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000102939.9|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000070864.14|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm39_v1_chr4_-_120955387_120955447	0.08063923583753398	AACACUG	ENSMUST00000058754.9|Zmpste24|ENSMUSG00000043207.11|zinc metallopeptidase, STE24
mm39_v1_chr14_+_48358267_48358285	0.07996462598374746	AACACUG	ENSMUST00000073150.6|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chr1_+_132345293_132345348	0.07885860578742501	AACACUG	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr12_+_32870334_32870360	0.07836803945046991	AACACUG	ENSMUST00000020886.9|Nampt|ENSMUSG00000020572.9|nicotinamide phosphoribosyltransferase
mm39_v1_chr5_-_67585137_67585157	0.07559768790347467	AACACUG	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr11_+_97253221_97253377	0.07475311300731047	AACACUG	ENSMUST00000238729.2|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7	ENSMUST00000045540.4|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7
mm39_v1_chr5_+_93241287_93241310	0.07454192048016049	AACACUG	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr1_-_9770434_9770554	0.07434949880551175	AACACUG	ENSMUST00000088658.11|Mybl1|ENSMUSG00000025912.17|myeloblastosis oncogene-like 1
mm39_v1_chr3_-_144275897_144275989	0.0737584599121738	AACACUG	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr5_-_123038329_123038438	0.07367841625387468	AACACUG	ENSMUST00000031435.14|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr15_-_44291699_44291733	0.07329494174692172	AACACUG	ENSMUST00000038719.8|Nudcd1|ENSMUSG00000038736.11|NudC domain containing 1
mm39_v1_chr7_+_127344942_127344999	0.0731605867711118	AACACUG	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr13_+_104315301_104315374	0.07252594733161187	AACACUG	ENSMUST00000022225.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23	ENSMUST00000069187.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23
mm39_v1_chr1_-_164285914_164285932	0.07148054913233265	AACACUG	ENSMUST00000027863.13|Atp1b1|ENSMUSG00000026576.13|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm39_v1_chrX_+_99811325_99811355	0.07133627646779797	AACACUG	ENSMUST00000000901.13|Dlg3|ENSMUSG00000000881.13|discs large MAGUK scaffold protein 3	ENSMUST00000113736.9|Dlg3|ENSMUSG00000000881.13|discs large MAGUK scaffold protein 3	ENSMUST00000087984.11|Dlg3|ENSMUSG00000000881.13|discs large MAGUK scaffold protein 3
mm39_v1_chr2_+_91541245_91541315	0.070106051044133	AACACUG	ENSMUST00000142692.2|Harbi1|ENSMUSG00000027243.9|harbinger transposase derived 1	ENSMUST00000090608.6|Harbi1|ENSMUSG00000027243.9|harbinger transposase derived 1
mm39_v1_chr8_-_48128164_48128201	0.06732545181190955	AACACUG	ENSMUST00000080353.3|Ing2|ENSMUSG00000063049.5|inhibitor of growth family, member 2
mm39_v1_chr3_-_94490023_94490077	0.06711915553686913	AACACUG	ENSMUST00000029783.16|Snx27|ENSMUSG00000028136.16|sorting nexin family member 27
mm39_v1_chr11_-_49603501_49603555	0.06492789446295918	AACACUG	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr9_+_51958453_51958473	0.06354107767513761	AACACUG	ENSMUST00000163153.9|Rdx|ENSMUSG00000032050.19|radixin
mm39_v1_chr9_+_37400577_37400622	0.06280415873655103	AACACUG	ENSMUST00000211060.2|Msantd2|ENSMUSG00000042138.10|Myb/SANT-like DNA-binding domain containing 2	ENSMUST00000239463.2|Msantd2|ENSMUSG00000042138.10|Myb/SANT-like DNA-binding domain containing 2	ENSMUST00000048604.8|Msantd2|ENSMUSG00000042138.10|Myb/SANT-like DNA-binding domain containing 2
mm39_v1_chr4_-_3938352_3938401	0.06271276061534364	AACACUG	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr3_+_63883527_63883556	0.06215340025663197	AACACUG	ENSMUST00000029405.8|Gmps|ENSMUSG00000027823.10|guanine monophosphate synthetase
mm39_v1_chr3_+_60910207_60910232	0.06073439504426955	AACACUG	ENSMUST00000029331.7|P2ry1|ENSMUSG00000027765.7|purinergic receptor P2Y, G-protein coupled 1	ENSMUST00000193201.2|P2ry1|ENSMUSG00000027765.7|purinergic receptor P2Y, G-protein coupled 1	ENSMUST00000193943.2|P2ry1|ENSMUSG00000027765.7|purinergic receptor P2Y, G-protein coupled 1
mm39_v1_chr11_+_100465730_100465808	0.060667580315478226	AACACUG	ENSMUST00000103120.5|Cnp|ENSMUSG00000006782.17|2',3'-cyclic nucleotide 3' phosphodiesterase
mm39_v1_chr18_-_46658957_46659078	0.060633709249945295	AACACUG	ENSMUST00000036226.6|Fem1c|ENSMUSG00000033319.6|fem 1 homolog c
mm39_v1_chr12_-_118265103_118265162	0.06052596302860139	AACACUG	ENSMUST00000222314.2|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4	ENSMUST00000026367.11|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4
mm39_v1_chr16_+_49675969_49676120	0.05992865623453114	AACACUG	ENSMUST00000229101.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230836.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000229206.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000084838.14|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230281.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm39_v1_chr16_-_21982049_21982049	0.05911144383974144	AACACUG	ENSMUST00000100052.11|Igf2bp2|ENSMUSG00000033581.18|insulin-like growth factor 2 mRNA binding protein 2
mm39_v1_chr1_-_151965876_151965918	0.05887683829050362	AACACUG	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chrX_-_162859095_162859125	0.05752656071409242	AACACUG	ENSMUST00000037928.9|Siah1b|ENSMUSG00000040749.12|siah E3 ubiquitin protein ligase 1B
mm39_v1_chr12_+_117480099_117480148	0.057008053587026195	AACACUG	ENSMUST00000109691.4|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr1_-_181039509_181039580	0.05630839156377049	AACACUG	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr12_+_78273356_78273432	0.055832414547761444	AACACUG	ENSMUST00000110388.10|Gphn|ENSMUSG00000047454.13|gephyrin
mm39_v1_chr9_-_100428113_100428192	0.055722537936848754	AACACUG	ENSMUST00000186591.7|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1	ENSMUST00000116522.8|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1
mm39_v1_chr14_+_121272950_121272990	0.055052625941852854	AACACUG	ENSMUST00000026635.8|Farp1|ENSMUSG00000025555.15|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm39_v1_chr2_+_118731860_118731969	0.05477028665760505	AACACUG	ENSMUST00000036578.7|Bahd1|ENSMUSG00000040007.9|bromo adjacent homology domain containing 1
mm39_v1_chr15_-_60696790_60696929	0.05465232307416928	AACACUG	ENSMUST00000100635.5|Lratd2|ENSMUSG00000072568.5|LRAT domain containing 1
mm39_v1_chr2_-_3476067_3476115	0.05453961898809832	AACACUG	ENSMUST00000027956.9|Suv39h2|ENSMUSG00000026646.17|suppressor of variegation 3-9 2
mm39_v1_chr9_-_56151334_56151382	0.05433150127818282	AACACUG	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr5_+_146168020_146168195	0.053493959392570956	AACACUG	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr8_+_105951777_105951827	0.053297506652856895	AACACUG	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr4_-_108158242_108158303	0.052062867877762965	AACACUG	ENSMUST00000043616.7|Zyg11b|ENSMUSG00000034636.10|zyg-ll family member B, cell cycle regulator
mm39_v1_chr11_-_98040377_98040446	0.05158974899732559	AACACUG	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr11_-_75239084_75239150	0.05122950722631591	AACACUG	ENSMUST00000000767.6|Rpa1|ENSMUSG00000000751.14|replication protein A1	ENSMUST00000092907.12|Rpa1|ENSMUSG00000000751.14|replication protein A1
mm39_v1_chr7_+_99184645_99184709	0.051076392081000066	AACACUG	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr18_-_77652820_77652858	0.05057297759476341	AACACUG	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr3_-_69034425_69034446	0.05052782384488624	AACACUG	ENSMUST00000194558.6|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4	ENSMUST00000029353.9|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4
mm39_v1_chr7_-_132616977_132617058	0.05046081787790826	AACACUG	ENSMUST00000169570.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr13_-_74210360_74210435	0.050459851372440016	AACACUG	ENSMUST00000222609.2|Cep72|ENSMUSG00000021572.10|centrosomal protein 72	ENSMUST00000036456.8|Cep72|ENSMUSG00000021572.10|centrosomal protein 72
mm39_v1_chr1_-_58625431_58625482	0.05023906548182346	AACACUG	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr2_+_132105056_132105190	0.04850903537498201	AACACUG	ENSMUST00000110158.8|Cds2|ENSMUSG00000058793.15|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	ENSMUST00000103181.11|Cds2|ENSMUSG00000058793.15|CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2
mm39_v1_chr7_+_130179063_130179214	0.048490820924993704	AACACUG	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr15_+_30172716_30172748	0.04839843664278756	AACACUG	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr2_+_160487801_160487816	0.0483693461627466	AACACUG	ENSMUST00000109468.3|Top1|ENSMUSG00000070544.7|topoisomerase (DNA) I
mm39_v1_chr2_+_4405769_4405786	0.04771500880420043	AACACUG	ENSMUST00000075767.14|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr5_-_138278223_138278284	0.04749346373099502	AACACUG	ENSMUST00000014089.9|Gpc2|ENSMUSG00000029510.16|glypican 2 (cerebroglycan)	ENSMUST00000161827.8|Gpc2|ENSMUSG00000029510.16|glypican 2 (cerebroglycan)
mm39_v1_chr1_+_192855776_192855938	0.04681331434308171	AACACUG	ENSMUST00000161235.3|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000160077.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000178744.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000192189.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000110831.4|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene	ENSMUST00000191613.2|A130010J15Rik|ENSMUSG00000079144.8|RIKEN cDNA A130010J15 gene
mm39_v1_chrX_-_7054952_7054981	0.04559335534616789	AACACUG	ENSMUST00000004428.14|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr4_-_134580604_134580656	0.04496457550050048	AACACUG	ENSMUST00000030628.15|Maco1|ENSMUSG00000028826.15|macoilin 1
mm39_v1_chr12_+_80690985_80691023	0.04456868981169446	AACACUG	ENSMUST00000219405.2|Slc39a9|ENSMUSG00000048833.10|solute carrier family 39 (zinc transporter), member 9	ENSMUST00000085245.7|Slc39a9|ENSMUSG00000048833.10|solute carrier family 39 (zinc transporter), member 9
mm39_v1_chr19_+_36811615_36811698	0.043888242202062666	AACACUG	ENSMUST00000025729.12|Tnks2|ENSMUSG00000024811.12|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm39_v1_chr1_-_30988772_30988860	0.0436908307801277	AACACUG	ENSMUST00000238874.2|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000027232.15|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000076587.6|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1	ENSMUST00000233506.2|Ptp4a1|ENSMUSG00000117310.3|protein tyrosine phosphatase 4a1
mm39_v1_chr9_+_95441652_95441710	0.043114811491581924	AACACUG	ENSMUST00000079597.7|Paqr9|ENSMUSG00000064225.7|progestin and adipoQ receptor family member IX
mm39_v1_chr15_-_98729333_98729402	0.042723862987947975	AACACUG	ENSMUST00000168846.3|Prkag1|ENSMUSG00000067713.8|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm39_v1_chr13_-_64422693_64422761	0.04240421850235118	AACACUG	ENSMUST00000109770.2|Cdc14b|ENSMUSG00000033102.16|CDC14 cell division cycle 14B
mm39_v1_chr11_+_19874354_19874375	0.04219294389844691	AACACUG	ENSMUST00000093299.13|Spred2|ENSMUSG00000045671.18|sprouty-related EVH1 domain containing 2
mm39_v1_chr5_+_108416763_108416790	0.04145607958645955	AACACUG	ENSMUST00000031190.5|Dr1|ENSMUSG00000029265.5|down-regulator of transcription 1
mm39_v1_chr16_+_91526169_91526272	0.04089881788874279	AACACUG	ENSMUST00000114001.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113999.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000064797.12|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000114002.9|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000095909.10|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000056482.14|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113996.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)
mm39_v1_chr18_+_44513547_44513644	0.04079939247714935	AACACUG	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr6_-_13607963_13608099	0.040587376321261234	AACACUG	ENSMUST00000031554.9|Tmem168|ENSMUSG00000029569.10|transmembrane protein 168	ENSMUST00000149123.3|Tmem168|ENSMUSG00000029569.10|transmembrane protein 168
mm39_v1_chr9_-_123461593_123461630	0.04048745753832574	AACACUG	ENSMUST00000026273.11|Slc6a20b|ENSMUSG00000025243.18|solute carrier family 6 (neurotransmitter transporter), member 20B
mm39_v1_chr11_-_22932090_22932382	0.03998369517074928	AACACUG	ENSMUST00000160826.2|Commd1b|ENSMUSG00000098650.2|COMM domain containing 1B	ENSMUST00000093270.6|Commd1|ENSMUSG00000051355.19|COMM domain containing 1	ENSMUST00000071068.9|Commd1|ENSMUSG00000051355.19|COMM domain containing 1	ENSMUST00000159081.8|Commd1|ENSMUSG00000051355.19|COMM domain containing 1
mm39_v1_chr11_+_78136569_78136646	0.03977009085303578	AACACUG	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr1_-_136273811_136273884	0.03940652511668375	AACACUG	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr11_+_114566257_114566321	0.038920251865098336	AACACUG	ENSMUST00000045779.6|Ttyh2|ENSMUSG00000034714.10|tweety family member 2
mm39_v1_chr6_-_100264439_100264461	0.0388164198638575	AACACUG	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr15_+_58287305_58287361	0.03834474923533501	AACACUG	ENSMUST00000037270.5|Fam91a1|ENSMUSG00000037119.5|family with sequence similarity 91, member A1
mm39_v1_chr9_-_44679136_44679147	0.038341107287771466	AACACUG	ENSMUST00000034607.10|Arcn1|ENSMUSG00000032096.17|archain 1
mm39_v1_chr10_-_90959853_90959921	0.03780662991451299	AACACUG	ENSMUST00000170810.8|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	ENSMUST00000076694.13|Slc25a3|ENSMUSG00000061904.13|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3
mm39_v1_chr17_-_28705082_28705123	0.03714910575722507	AACACUG	ENSMUST00000079413.11|Fkbp5|ENSMUSG00000024222.18|FK506 binding protein 5
mm39_v1_chr8_+_112667328_112667341	0.0369839589127587	AACACUG	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chr10_-_118705029_118705091	0.03692381136015942	AACACUG	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr2_+_119378178_119378213	0.03676337517713956	AACACUG	ENSMUST00000014221.13|Chp1|ENSMUSG00000014077.14|calcineurin-like EF hand protein 1	ENSMUST00000119172.2|Chp1|ENSMUSG00000014077.14|calcineurin-like EF hand protein 1
mm39_v1_chr19_+_37184927_37184988	0.03637428052283356	AACACUG	ENSMUST00000024078.15|Marchf5|ENSMUSG00000023307.15|membrane associated ring-CH-type finger 5	ENSMUST00000112391.8|Marchf5|ENSMUSG00000023307.15|membrane associated ring-CH-type finger 5
mm39_v1_chr11_+_17109263_17109404	0.03542179212276737	AACACUG	ENSMUST00000102880.5|Ppp3r1|ENSMUSG00000033953.11|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm39_v1_chr11_-_115590318_115590360	0.03488183987663241	AACACUG	ENSMUST00000106497.8|Grb2|ENSMUSG00000059923.14|growth factor receptor bound protein 2
mm39_v1_chr2_+_129642371_129642493	0.03465069507126893	AACACUG	ENSMUST00000165413.9|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35	ENSMUST00000166282.3|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35
mm39_v1_chr2_+_29855572_29855700	0.03392642207510539	AACACUG	ENSMUST00000113719.9|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000113717.8|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000113741.8|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000100225.9|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000095083.11|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1	ENSMUST00000046257.14|Sptan1|ENSMUSG00000057738.15|spectrin alpha, non-erythrocytic 1
mm39_v1_chr11_-_79971750_79971828	0.03363197664123293	AACACUG	ENSMUST00000103233.10|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3	ENSMUST00000061283.15|Crlf3|ENSMUSG00000017561.17|cytokine receptor-like factor 3
mm39_v1_chr14_+_30973407_30973489	0.033589543241407324	AACACUG	ENSMUST00000022458.11|Bap1|ENSMUSG00000021901.11|Brca1 associated protein 1
mm39_v1_chr2_-_60793536_60793595	0.033550051613768145	AACACUG	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr16_+_17051423_17051528	0.033420911274882066	AACACUG	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr12_+_108758871_108758914	0.033106727851390835	AACACUG	ENSMUST00000021692.9|Yy1|ENSMUSG00000021264.13|YY1 transcription factor
mm39_v1_chr5_+_118698689_118698804	0.03231283305353685	AACACUG	ENSMUST00000100816.8|Med13l|ENSMUSG00000018076.13|mediator complex subunit 13-like	ENSMUST00000201010.2|Med13l|ENSMUSG00000018076.13|mediator complex subunit 13-like
mm39_v1_chr5_-_25047577_25047623	0.032264850517899034	AACACUG	ENSMUST00000030787.9|Rheb|ENSMUSG00000028945.10|Ras homolog enriched in brain
mm39_v1_chr16_-_43959559_43959668	0.03183944482455506	AACACUG	ENSMUST00000063661.13|Atp6v1a|ENSMUSG00000052459.14|ATPase, H+ transporting, lysosomal V1 subunit A	ENSMUST00000114666.9|Atp6v1a|ENSMUSG00000052459.14|ATPase, H+ transporting, lysosomal V1 subunit A
mm39_v1_chr16_+_91855158_91855216	0.03170294020506449	AACACUG	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr6_+_108637577_108637643	0.03077958790136449	AACACUG	ENSMUST00000032194.11|Bhlhe40|ENSMUSG00000030103.12|basic helix-loop-helix family, member e40
mm39_v1_chr8_+_4216556_4216739	0.030213696701145945	AACACUG	ENSMUST00000239400.2|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000177053.8|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176149.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176072.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176825.3|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like
mm39_v1_chr9_-_45866550_45866589	0.030099315663398074	AACACUG	ENSMUST00000038488.17|Sidt2|ENSMUSG00000034908.17|SID1 transmembrane family, member 2
mm39_v1_chr2_+_15060051_15060222	0.02913609159833347	AACACUG	ENSMUST00000069870.11|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000239125.2|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B	ENSMUST00000193836.3|Arl5b|ENSMUSG00000017418.15|ADP-ribosylation factor-like 5B
mm39_v1_chr10_+_111309020_111309108	0.02900131806156562	AACACUG	ENSMUST00000065917.16|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000219961.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000217908.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1
mm39_v1_chr11_-_106679312_106679358	0.028201328138332878	AACACUG	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr9_+_56325893_56325965	0.028200464279944923	AACACUG	ENSMUST00000034879.5|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000215269.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A
mm39_v1_chr5_-_75205358_75205435	0.02819324491208053	AACACUG	ENSMUST00000075452.7|Chic2|ENSMUSG00000029229.9|cysteine-rich hydrophobic domain 2
mm39_v1_chr7_-_99002204_99002328	0.027910833838262376	AACACUG	ENSMUST00000208292.2|Serpinh1|ENSMUSG00000070436.13|serine (or cysteine) peptidase inhibitor, clade H, member 1	ENSMUST00000207989.2|Serpinh1|ENSMUSG00000070436.13|serine (or cysteine) peptidase inhibitor, clade H, member 1	ENSMUST00000208749.2|Serpinh1|ENSMUSG00000070436.13|serine (or cysteine) peptidase inhibitor, clade H, member 1	ENSMUST00000169437.9|Serpinh1|ENSMUSG00000070436.13|serine (or cysteine) peptidase inhibitor, clade H, member 1	ENSMUST00000208119.2|Serpinh1|ENSMUSG00000070436.13|serine (or cysteine) peptidase inhibitor, clade H, member 1	ENSMUST00000207849.2|Serpinh1|ENSMUSG00000070436.13|serine (or cysteine) peptidase inhibitor, clade H, member 1
mm39_v1_chr8_+_79235946_79236030	0.027738910462323258	AACACUG	ENSMUST00000209490.2|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	ENSMUST00000034111.10|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm39_v1_chr4_-_109333866_109333924	0.02766405893648839	AACACUG	ENSMUST00000030284.10|Rnf11|ENSMUSG00000028557.11|ring finger protein 11
mm39_v1_chr3_-_116217579_116217681	0.027328269756259224	AACACUG	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr10_+_69932930_69933066	0.027311846609394706	AACACUG	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr11_-_82719850_82719869	0.02712302752255252	AACACUG	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr11_+_70591299_70591476	0.0268096274251123	AACACUG	ENSMUST00000152618.9|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000102554.8|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000094499.11|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000072187.12|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C	ENSMUST00000137119.3|Kif1c|ENSMUSG00000020821.18|kinesin family member 1C
mm39_v1_chr9_+_47441471_47441671	0.026522295977601296	AACACUG	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chr14_-_49304110_49304132	0.026505770356249597	AACACUG	ENSMUST00000162175.9|Exoc5|ENSMUSG00000061244.15|exocyst complex component 5
mm39_v1_chr5_-_137682927_137682992	0.026034497316384436	AACACUG	ENSMUST00000100544.11|Agfg2|ENSMUSG00000029722.16|ArfGAP with FG repeats 2	ENSMUST00000031736.16|Agfg2|ENSMUSG00000029722.16|ArfGAP with FG repeats 2	ENSMUST00000151839.2|Agfg2|ENSMUSG00000029722.16|ArfGAP with FG repeats 2
mm39_v1_chr4_+_40143079_40143108	0.025923462530814206	AACACUG	ENSMUST00000102973.4|Aco1|ENSMUSG00000028405.10|aconitase 1
mm39_v1_chr4_+_152270510_152270591	0.025748760090120917	AACACUG	ENSMUST00000167926.8|Acot7|ENSMUSG00000028937.15|acyl-CoA thioesterase 7
mm39_v1_chr7_-_73191484_73191503	0.025431359088159577	AACACUG	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr15_+_93296225_93296304	0.025415678455471203	AACACUG	ENSMUST00000109256.11|Pphln1|ENSMUSG00000036167.17|periphilin 1	ENSMUST00000049122.16|Pphln1|ENSMUSG00000036167.17|periphilin 1	ENSMUST00000068457.15|Pphln1|ENSMUSG00000036167.17|periphilin 1
mm39_v1_chr8_+_110595216_110595243	0.025330392090665482	AACACUG	ENSMUST00000179721.8|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2	ENSMUST00000034175.5|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2
mm39_v1_chr12_-_108241392_108241476	0.025305810097154123	AACACUG	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chr9_-_72019109_72019191	0.025278563436034632	AACACUG	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr4_+_11191726_11191790	0.02522755862507479	AACACUG	ENSMUST00000029866.16|Ccne2|ENSMUSG00000028212.17|cyclin E2	ENSMUST00000108324.4|Ccne2|ENSMUSG00000028212.17|cyclin E2
mm39_v1_chr3_-_41037427_41037481	0.025226714819677542	AACACUG	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chr6_+_86415342_86415386	0.02481244064807559	AACACUG	ENSMUST00000050497.14|C87436|ENSMUSG00000046679.17|expressed sequence C87436	ENSMUST00000203568.3|C87436|ENSMUSG00000046679.17|expressed sequence C87436
mm39_v1_chr17_+_29171386_29171573	0.024585992860572912	AACACUG	ENSMUST00000118762.9|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000057174.16|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000232874.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000232772.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000233334.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000150858.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20	ENSMUST00000233064.2|Kctd20|ENSMUSG00000005936.20|potassium channel tetramerisation domain containing 20
mm39_v1_chr11_+_93776965_93777045	0.024299166398487816	AACACUG	ENSMUST00000063718.11|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107854.9|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr2_+_90770742_90770888	0.023730348329468905	AACACUG	ENSMUST00000005643.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111451.10|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000177642.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068726.13|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068747.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr7_-_88987917_88988003	0.023712407129268937	AACACUG	ENSMUST00000137723.2|Tmem135|ENSMUSG00000039428.12|transmembrane protein 135	ENSMUST00000117852.8|Tmem135|ENSMUSG00000039428.12|transmembrane protein 135	ENSMUST00000041968.11|Tmem135|ENSMUSG00000039428.12|transmembrane protein 135
mm39_v1_chr13_-_43634695_43634823	0.023184936388342434	AACACUG	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr11_+_110956980_110957000	0.022600927937592743	AACACUG	ENSMUST00000042970.3|Kcnj2|ENSMUSG00000041695.3|potassium inwardly-rectifying channel, subfamily J, member 2
mm39_v1_chr15_-_102044658_102044669	0.02251706518585035	AACACUG	ENSMUST00000154032.2|Spryd3|ENSMUSG00000036966.16|SPRY domain containing 3
mm39_v1_chr18_+_32510270_32510342	0.022510613816991647	AACACUG	ENSMUST00000234857.2|Bin1|ENSMUSG00000024381.17|bridging integrator 1	ENSMUST00000234496.2|Bin1|ENSMUSG00000024381.17|bridging integrator 1	ENSMUST00000091967.13|Bin1|ENSMUSG00000024381.17|bridging integrator 1	ENSMUST00000025239.9|Bin1|ENSMUSG00000024381.17|bridging integrator 1
mm39_v1_chr2_-_155953874_155953898	0.022390188387129552	AACACUG	ENSMUST00000059647.12|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000109604.9|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000142960.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000138068.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12	ENSMUST00000136296.9|Cpne1|ENSMUSG00000074643.13|copine I	ENSMUST00000128499.2|Rbm12|ENSMUSG00000089824.11|RNA binding motif protein 12
mm39_v1_chr4_-_131939548_131939614	0.02224537169864248	AACACUG	ENSMUST00000152796.8|Ythdf2|ENSMUSG00000040025.18|YTH N6-methyladenosine RNA binding protein 2
mm39_v1_chr18_+_10725532_10725564	0.02173425064860851	AACACUG	ENSMUST00000052838.11|Mib1|ENSMUSG00000024294.15|mindbomb E3 ubiquitin protein ligase 1
mm39_v1_chr13_+_55740948_55740990	0.020757667222564648	AACACUG	ENSMUST00000109905.5|Tmed9|ENSMUSG00000058569.9|transmembrane p24 trafficking protein 9
mm39_v1_chr4_+_31964082_31964263	0.020749513188534758	AACACUG	ENSMUST00000037607.11|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000080933.13|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108183.8|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7	ENSMUST00000108184.3|Map3k7|ENSMUSG00000028284.14|mitogen-activated protein kinase kinase kinase 7
mm39_v1_chr7_-_119494918_119494975	0.020531477643746146	AACACUG	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr5_+_3393893_3393945	0.02033279005178127	AACACUG	ENSMUST00000165117.8|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6	ENSMUST00000197385.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr6_+_92068361_92068371	0.020273988030360433	AACACUG	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr3_+_68375495_68375542	0.02009118592773304	AACACUG	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr9_+_95836797_95836836	0.01982480395053841	AACACUG	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr6_-_124715560_124715588	0.01942125738868732	AACACUG	ENSMUST00000004377.15|Ptpn6|ENSMUSG00000004266.16|protein tyrosine phosphatase, non-receptor type 6
mm39_v1_chr11_+_105975403_105975449	0.019016545261093615	AACACUG	ENSMUST00000002044.10|Map3k3|ENSMUSG00000020700.12|mitogen-activated protein kinase kinase kinase 3
mm39_v1_chr5_+_111478608_111478673	0.018590859373576282	AACACUG	ENSMUST00000086635.9|Pitpnb|ENSMUSG00000050017.12|phosphatidylinositol transfer protein, beta	ENSMUST00000200298.2|Pitpnb|ENSMUSG00000050017.12|phosphatidylinositol transfer protein, beta
mm39_v1_chr2_-_32737208_32737235	0.018559197217072988	AACACUG	ENSMUST00000077458.7|Stxbp1|ENSMUSG00000026797.17|syntaxin binding protein 1	ENSMUST00000208840.2|Stxbp1|ENSMUSG00000026797.17|syntaxin binding protein 1
mm39_v1_chr2_-_136958544_136958564	0.018452660524890814	AACACUG	ENSMUST00000028735.8|Jag1|ENSMUSG00000027276.8|jagged 1
mm39_v1_chr18_+_32296126_32296249	0.018317471573851773	AACACUG	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr5_+_24890810_24890822	0.0183152280846959	AACACUG	ENSMUST00000068825.8|Nub1|ENSMUSG00000028954.12|negative regulator of ubiquitin-like proteins 1
mm39_v1_chr9_-_104140099_104140149	0.017766537649827097	AACACUG	ENSMUST00000035170.13|Dnajc13|ENSMUSG00000032560.15|DnaJ heat shock protein family (Hsp40) member C13
mm39_v1_chr4_-_58553311_58553357	0.017626704938944054	AACACUG	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr11_-_90281721_90281753	0.017536753408569392	AACACUG	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr8_-_87472562_87472682	0.01739647528451215	AACACUG	ENSMUST00000045296.6|Siah1a|ENSMUSG00000036840.6|siah E3 ubiquitin protein ligase 1A
mm39_v1_chr12_-_86931529_86931580	0.016597694166237235	AACACUG	ENSMUST00000038422.8|Irf2bpl|ENSMUSG00000034168.8|interferon regulatory factor 2 binding protein-like
mm39_v1_chr14_-_8457069_8457272	0.016561715892351097	AACACUG	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr5_+_150183201_150183232	0.016013696077809517	AACACUG	ENSMUST00000087204.9|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein
mm39_v1_chr16_-_78373510_78373535	0.01594471723608613	AACACUG	ENSMUST00000231973.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000232528.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000114220.9|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed
mm39_v1_chr18_+_23885390_23885458	0.015653172053220792	AACACUG	ENSMUST00000170802.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000155708.8|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2	ENSMUST00000118826.9|Mapre2|ENSMUSG00000024277.15|microtubule-associated protein, RP/EB family, member 2
mm39_v1_chr9_-_75316625_75316668	0.015297765618171337	AACACUG	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chrX_-_10083157_10083160	0.015209115352943045	AACACUG	ENSMUST00000072393.9|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000044598.13|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000073392.11|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115533.8|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator	ENSMUST00000115532.2|Rpgr|ENSMUSG00000031174.18|retinitis pigmentosa GTPase regulator
mm39_v1_chr19_+_16110176_16110285	0.01502198695103262	AACACUG	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr1_-_16589511_16589560	0.014424204363838957	AACACUG	ENSMUST00000162751.8|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000027052.13|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2	ENSMUST00000149320.9|Stau2|ENSMUSG00000025920.20|staufen double-stranded RNA binding protein 2
mm39_v1_chr14_-_70757601_70757628	0.014231662160475597	AACACUG	ENSMUST00000022693.9|Bmp1|ENSMUSG00000022098.11|bone morphogenetic protein 1
mm39_v1_chr11_-_61470462_61470533	0.014071007927371608	AACACUG	ENSMUST00000147501.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000146455.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108711.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108712.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000001063.15|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108713.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000179936.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000178202.8|Epn2|ENSMUSG00000001036.18|epsin 2
mm39_v1_chr16_-_97763780_97763836	0.013632185205059226	AACACUG	ENSMUST00000232187.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000232165.2|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2	ENSMUST00000231263.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000052089.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000063605.15|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000113734.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000231560.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21
mm39_v1_chr11_-_23615862_23615959	0.013025914022870571	AACACUG	ENSMUST00000020523.4|Pex13|ENSMUSG00000020283.6|peroxisomal biogenesis factor 13
mm39_v1_chr7_+_58878490_58878518	0.012939013273879791	AACACUG	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr16_+_41353360_41353429	0.012859080985185194	AACACUG	ENSMUST00000099761.10|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr5_-_124465946_124466035	0.012748973353679829	AACACUG	ENSMUST00000031344.13|Mphosph9|ENSMUSG00000038126.18|M-phase phosphoprotein 9
mm39_v1_chr4_-_129636073_129636106	0.012382528851542934	AACACUG	ENSMUST00000066257.6|Khdrbs1|ENSMUSG00000028790.14|KH domain containing, RNA binding, signal transduction associated 1
mm39_v1_chr14_+_5894220_5894254	0.012168006457073804	AACACUG	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr2_+_166647426_166647525	0.012157637167588001	AACACUG	ENSMUST00000099078.10|Arfgef2|ENSMUSG00000074582.11|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm39_v1_chr3_+_30656766_30656802	0.012035228584581727	AACACUG	ENSMUST00000047502.9|Mynn|ENSMUSG00000037730.14|myoneurin
mm39_v1_chr11_+_21041291_21041308	0.011824586064059598	AACACUG	ENSMUST00000093290.12|Peli1|ENSMUSG00000020134.14|pellino 1
mm39_v1_chr7_-_92319126_92319151	0.01151135490760571	AACACUG	ENSMUST00000119954.9|Pcf11|ENSMUSG00000041328.17|PCF11 cleavage and polyadenylation factor subunit
mm39_v1_chr9_-_50639230_50639308	0.011426061705994632	AACACUG	ENSMUST00000118707.2|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1	ENSMUST00000034566.15|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1
mm39_v1_chr17_+_25407352_25407392	0.011314439450172319	AACACUG	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr1_-_52539395_52539459	0.011234571787813395	AACACUG	ENSMUST00000186764.7|Nab1|ENSMUSG00000002881.15|Ngfi-A binding protein 1
mm39_v1_chr18_-_53877579_53877710	0.011222991486534712	AACACUG	ENSMUST00000049811.8|Cep120|ENSMUSG00000048799.9|centrosomal protein 120	ENSMUST00000237062.2|Cep120|ENSMUSG00000048799.9|centrosomal protein 120
mm39_v1_chr9_-_27066685_27066723	0.011159640817717543	AACACUG	ENSMUST00000034472.16|Jam3|ENSMUSG00000031990.16|junction adhesion molecule 3
mm39_v1_chr5_-_92231314_92231416	0.011125501508805861	AACACUG	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr1_+_127701901_127701975	0.011059848290007312	AACACUG	ENSMUST00000112570.2|Ccnt2|ENSMUSG00000026349.15|cyclin T2	ENSMUST00000027587.15|Ccnt2|ENSMUSG00000026349.15|cyclin T2
mm39_v1_chr19_+_44282113_44282113	0.011001479249356244	AACACUG	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chrX_-_156381652_156381711	0.010997230718973267	AACACUG	ENSMUST00000149249.2|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2	ENSMUST00000058098.15|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2
mm39_v1_chr10_+_69048464_69048503	0.010628751787042475	AACACUG	ENSMUST00000020101.12|Rhobtb1|ENSMUSG00000019944.15|Rho-related BTB domain containing 1
mm39_v1_chr2_+_60040231_60040288	0.010496293725595482	AACACUG	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr6_+_134958681_134958681	0.01013829568909752	AACACUG	ENSMUST00000167323.3|Apold1|ENSMUSG00000090698.3|apolipoprotein L domain containing 1
mm39_v1_chr3_+_106389732_106389809	0.009925761136867309	AACACUG	ENSMUST00000029508.11|Dennd2d|ENSMUSG00000027901.13|DENN/MADD domain containing 2D
mm39_v1_chr18_+_35695199_35695313	0.009709549841673984	AACACUG	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr9_+_35332837_35332913	0.009561934905364734	AACACUG	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr12_+_29578354_29578468	0.00932588951019983	AACACUG	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr7_+_88079465_88079495	0.009074291871924088	AACACUG	ENSMUST00000107256.4|Rab38|ENSMUSG00000030559.9|RAB38, member RAS oncogene family
mm39_v1_chr8_-_112580910_112580988	0.00904696519275469	AACACUG	ENSMUST00000034432.7|Cfdp1|ENSMUSG00000031954.7|craniofacial development protein 1
mm39_v1_chr13_-_89890609_89890634	0.008993091788826865	AACACUG	ENSMUST00000109546.9|Vcan|ENSMUSG00000021614.17|versican
mm39_v1_chr10_+_43354807_43354859	0.008912840975407893	AACACUG	ENSMUST00000167488.9|Bend3|ENSMUSG00000038214.16|BEN domain containing 3
mm39_v1_chr3_-_51184895_51184996	0.008586803697260953	AACACUG	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr2_-_104647041_104647138	0.007757274753443134	AACACUG	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr16_-_50252703_50252772	0.0075441494747035395	AACACUG	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr17_+_88748139_88748217	0.007076283571143048	AACACUG	ENSMUST00000112238.9|Foxn2|ENSMUSG00000034998.19|forkhead box N2	ENSMUST00000155640.2|Foxn2|ENSMUSG00000034998.19|forkhead box N2
mm39_v1_chr11_-_8614497_8614594	0.0070516068215093946	AACACUG	ENSMUST00000020695.13|Tns3|ENSMUSG00000020422.15|tensin 3
mm39_v1_chr9_+_25163735_25163812	0.006903642616901451	AACACUG	ENSMUST00000115272.9|Septin7|ENSMUSG00000001833.18|septin 7	ENSMUST00000165594.4|Septin7|ENSMUSG00000001833.18|septin 7
mm39_v1_chr2_+_37342248_37342297	0.006567821415752849	AACACUG	ENSMUST00000148470.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000066055.10|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000112920.2|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr10_-_93146937_93147024	0.006486777450487041	AACACUG	ENSMUST00000008542.12|Elk3|ENSMUSG00000008398.17|ELK3, member of ETS oncogene family
mm39_v1_chr11_-_51497665_51497684	0.005945800941561539	AACACUG	ENSMUST00000074669.10|Hnrnpab|ENSMUSG00000020358.18|heterogeneous nuclear ribonucleoprotein A/B	ENSMUST00000101249.9|Hnrnpab|ENSMUSG00000020358.18|heterogeneous nuclear ribonucleoprotein A/B	ENSMUST00000109103.4|Hnrnpab|ENSMUSG00000020358.18|heterogeneous nuclear ribonucleoprotein A/B
mm39_v1_chr12_+_72583114_72583169	0.005817901327250329	AACACUG	ENSMUST00000044352.8|Pcnx4|ENSMUSG00000034501.8|pecanex homolog 4
mm39_v1_chr3_-_57483175_57483257	0.005663806615063516	AACACUG	ENSMUST00000029380.14|Wwtr1|ENSMUSG00000027803.15|WW domain containing transcription regulator 1
mm39_v1_chr4_+_65042411_65042411	0.0054757054726774085	AACACUG	ENSMUST00000084501.4|Pappa|ENSMUSG00000028370.8|pregnancy-associated plasma protein A
mm39_v1_chr18_+_61688329_61688361	0.005450887302796401	AACACUG	ENSMUST00000165123.8|Csnk1a1|ENSMUSG00000024576.15|casein kinase 1, alpha 1
mm39_v1_chr10_-_116417333_116417416	0.00541792122824797	AACACUG	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr1_+_191638854_191638879	0.005326176552402505	AACACUG	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr4_-_84593512_84593631	0.0052883123489147555	AACACUG	ENSMUST00000176612.8|Bnc2|ENSMUSG00000028487.19|basonuclin 2
mm39_v1_chr11_+_97306353_97306402	0.004764834157955996	AACACUG	ENSMUST00000121799.8|Arhgap23|ENSMUSG00000049807.17|Rho GTPase activating protein 23
mm39_v1_chr17_+_3165232_3165257	0.004597769528816314	AACACUG	ENSMUST00000076734.8|Scaf8|ENSMUSG00000046201.10|SR-related CTD-associated factor 8
mm39_v1_chr3_-_107993906_107994022	0.004313080143107319	AACACUG	ENSMUST00000102638.8|Ampd2|ENSMUSG00000027889.18|adenosine monophosphate deaminase 2	ENSMUST00000102637.8|Ampd2|ENSMUSG00000027889.18|adenosine monophosphate deaminase 2
mm39_v1_chr14_-_80008745_80008758	0.0042624402581130354	AACACUG	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr13_+_76532470_76532654	0.0039940826296061185	AACACUG	ENSMUST00000125209.8|Mctp1|ENSMUSG00000021596.17|multiple C2 domains, transmembrane 1
mm39_v1_chr6_-_52222776_52222806	0.0037102149840666358	AACACUG	ENSMUST00000048026.10|Hoxa11|ENSMUSG00000038210.11|homeobox A11
mm39_v1_chr7_-_80597479_80597528	0.0035092514824785082	AACACUG	ENSMUST00000026818.12|Sec11a|ENSMUSG00000025724.13|SEC11 homolog A, signal peptidase complex subunit	ENSMUST00000117383.8|Sec11a|ENSMUSG00000025724.13|SEC11 homolog A, signal peptidase complex subunit	ENSMUST00000119980.2|Sec11a|ENSMUSG00000025724.13|SEC11 homolog A, signal peptidase complex subunit
mm39_v1_chr14_-_61677258_61677323	0.003423131690221807	AACACUG	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr5_+_108609087_108609107	0.0033549695671333257	AACACUG	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chrX_-_50294652_50294716	0.0033350193283110184	AACACUG	ENSMUST00000114875.8|Mbnl3|ENSMUSG00000036109.18|muscleblind like splicing factor 3
mm39_v1_chr4_+_57637817_57637845	0.0033243761979330866	AACACUG	ENSMUST00000150412.4|Pakap|ENSMUSG00000089945.14|paralemmin A kinase anchor protein
mm39_v1_chr12_+_111504450_111504633	0.0033165167073813586	AACACUG	ENSMUST00000166123.9|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5	ENSMUST00000222441.2|Eif5|ENSMUSG00000021282.18|eukaryotic translation initiation factor 5
mm39_v1_chr1_-_80318197_80318229	0.0032970517757588596	AACACUG	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr11_+_98592089_98592177	0.003133977492078158	AACACUG	ENSMUST00000038886.3|Csf3|ENSMUSG00000038067.3|colony stimulating factor 3 (granulocyte)
mm39_v1_chr9_+_68561042_68561068	0.0030410020011832793	AACACUG	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr10_-_125164399_125164410	0.0028610824236219444	AACACUG	ENSMUST00000063318.10|Slc16a7|ENSMUSG00000020102.16|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm39_v1_chr15_+_32920869_32920972	0.002695337675072367	AACACUG	ENSMUST00000022871.7|Sdc2|ENSMUSG00000022261.7|syndecan 2
mm39_v1_chr1_-_63153675_63153826	0.002262096256992367	AACACUG	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr14_+_79825131_79825152	0.0021599280633042292	AACACUG	ENSMUST00000054908.10|Sugt1|ENSMUSG00000022024.11|SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)
mm39_v1_chr12_-_83534482_83534504	0.001880950764533736	AACACUG	ENSMUST00000177959.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3	ENSMUST00000178756.8|Dpf3|ENSMUSG00000021221.16|D4, zinc and double PHD fingers, family 3
mm39_v1_chr9_+_72714156_72714156	0.0018328262549857375	AACACUG	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr5_+_76988444_76988484	0.0017995159862382113	AACACUG	ENSMUST00000120639.9|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000163347.8|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000121851.2|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin
mm39_v1_chr3_-_121056944_121056997	0.001765940286588426	AACACUG	ENSMUST00000128909.8|Tlcd4|ENSMUSG00000028132.16|TLC domain containing 4	ENSMUST00000029777.14|Tlcd4|ENSMUSG00000028132.16|TLC domain containing 4
mm39_v1_chr16_+_44215136_44215193	0.0016545299204806508	AACACUG	ENSMUST00000099742.9|Cfap44|ENSMUSG00000071550.15|cilia and flagella associated protein 44
mm39_v1_chr3_+_128993568_128993591	0.0015896346024979757	AACACUG	ENSMUST00000029657.16|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2	ENSMUST00000106382.11|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2
mm39_v1_chr10_+_92996686_92996756	0.0013182378061831355	AACACUG	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr5_-_29683468_29683595	0.0007957766342346346	AACACUG	ENSMUST00000165512.4|Mnx1|ENSMUSG00000001566.10|motor neuron and pancreas homeobox 1	ENSMUST00000001608.8|Mnx1|ENSMUSG00000001566.10|motor neuron and pancreas homeobox 1
mm39_v1_chr4_+_62883796_62883854	0.0006572309600294538	AACACUG	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr6_-_35516700_35516823	0.00037253260730439684	AACACUG	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr1_-_126758369_126758515	0.0002003076683529352	AACACUG	ENSMUST00000112583.8|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5	ENSMUST00000094609.10|Nckap5|ENSMUSG00000049690.16|NCK-associated protein 5
mm39_v1_chr7_-_128063354_128063397	0.00010171076607658162	AACACUG	ENSMUST00000106226.9|Tial1|ENSMUSG00000030846.16|Tia1 cytotoxic granule-associated RNA binding protein-like 1	ENSMUST00000106228.8|Tial1|ENSMUSG00000030846.16|Tia1 cytotoxic granule-associated RNA binding protein-like 1
