mm39_v1_chr4_-_94940425_94940459	0.6420968218571174	AAUACUG	ENSMUST00000107094.2|Jun|ENSMUSG00000052684.5|jun proto-oncogene
mm39_v1_chr16_+_16714333_16714462	0.5513874332129609	AAUACUG	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr4_+_102617495_102617722	0.5460983069392717	AAUACUG	ENSMUST00000072481.12|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000156596.8|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000080728.13|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000106882.9|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1
mm39_v1_chr12_-_73093953_73093953	0.5181767542201738	AAUACUG	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr5_+_108213608_108213634	0.4375351609667127	AAUACUG	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr12_-_54703281_54703358	0.4298989191786088	AAUACUG	ENSMUST00000056228.8|Sptssa|ENSMUSG00000044408.8|serine palmitoyltransferase, small subunit A
mm39_v1_chr3_+_121220146_121220188	0.41776454622209125	AAUACUG	ENSMUST00000029773.13|Cnn3|ENSMUSG00000053931.12|calponin 3, acidic
mm39_v1_chr14_-_31552608_31552689	0.4008786822695623	AAUACUG	ENSMUST00000014640.9|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chr9_+_106048116_106048153	0.37662483494847293	AAUACUG	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr17_+_28075415_28075486	0.3613470339954771	AAUACUG	ENSMUST00000114849.3|Uhrf1bp1|ENSMUSG00000039512.13|UHRF1 (ICBP90) binding protein 1
mm39_v1_chr13_+_54225828_54225928	0.3545196961625661	AAUACUG	ENSMUST00000021930.10|Sfxn1|ENSMUSG00000021474.10|sideroflexin 1
mm39_v1_chrX_-_50106844_50106910	0.35381228534800824	AAUACUG	ENSMUST00000053593.8|Rap2c|ENSMUSG00000050029.8|RAP2C, member of RAS oncogene family
mm39_v1_chr10_-_37014859_37014933	0.3527832476160733	AAUACUG	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr2_-_131987008_131987037	0.3495383434425412	AAUACUG	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr19_+_44282113_44282113	0.33764987037373184	AAUACUG	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chr10_-_117681864_117681940	0.33420258714045337	AAUACUG	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr2_+_18681812_18681842	0.3314185962033987	AAUACUG	ENSMUST00000028071.13|Bmi1|ENSMUSG00000026739.14|Bmi1 polycomb ring finger oncogene
mm39_v1_chr9_+_113641615_113641685	0.33098775651180284	AAUACUG	ENSMUST00000111838.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000166734.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000214522.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000163895.3|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr6_+_116314975_116315044	0.3209345036514185	AAUACUG	ENSMUST00000079012.13|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000101032.10|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000123405.8|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000204657.3|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000203116.2|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000203193.3|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8	ENSMUST00000126376.8|Marchf8|ENSMUSG00000025702.16|membrane associated ring-CH-type finger 8
mm39_v1_chr1_-_153208477_153208566	0.3082509865914044	AAUACUG	ENSMUST00000027752.15|Lamc1|ENSMUSG00000026478.15|laminin, gamma 1
mm39_v1_chr12_-_107969853_107969872	0.28593128899691084	AAUACUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr17_-_31877703_31877866	0.2820959406366508	AAUACUG	ENSMUST00000236475.2|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000166526.9|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000014684.6|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
mm39_v1_chr7_+_82516491_82516604	0.27498466819306244	AAUACUG	ENSMUST00000082237.7|Mex3b|ENSMUSG00000057706.8|mex3 RNA binding family member B
mm39_v1_chr11_+_90140294_90140312	0.2694272827695663	AAUACUG	ENSMUST00000004050.7|Mmd|ENSMUSG00000003948.18|monocyte to macrophage differentiation-associated
mm39_v1_chr4_+_97665843_97665870	0.2669830418047418	AAUACUG	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr9_-_96513529_96513670	0.2666424891444267	AAUACUG	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr16_+_20317544_20317567	0.26469611735747994	AAUACUG	ENSMUST00000003320.14|Eif2b5|ENSMUSG00000003235.14|eukaryotic translation initiation factor 2B, subunit 5 epsilon
mm39_v1_chr5_-_21260878_21260960	0.2635115888326038	AAUACUG	ENSMUST00000030556.8|Ptpn12|ENSMUSG00000028771.14|protein tyrosine phosphatase, non-receptor type 12
mm39_v1_chr8_-_117459730_117459824	0.2621178448093722	AAUACUG	ENSMUST00000109102.4|Cdyl2|ENSMUSG00000031758.11|chromodomain protein, Y chromosome-like 2
mm39_v1_chr11_-_103588605_103588724	0.2604540472784903	AAUACUG	ENSMUST00000021329.14|Gosr2|ENSMUSG00000020946.14|golgi SNAP receptor complex member 2
mm39_v1_chr11_+_79883885_79883963	0.257508493580341	AAUACUG	ENSMUST00000163272.2|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit	ENSMUST00000017692.15|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit
mm39_v1_chr11_+_109540201_109540264	0.25733992325678795	AAUACUG	ENSMUST00000106677.8|Prkar1a|ENSMUSG00000020612.17|protein kinase, cAMP dependent regulatory, type I, alpha
mm39_v1_chr10_+_53473032_53473100	0.25205336793512195	AAUACUG	ENSMUST00000020004.8|Asf1a|ENSMUSG00000019857.8|anti-silencing function 1A histone chaperone
mm39_v1_chr1_+_16175998_16176095	0.24971926271075495	AAUACUG	ENSMUST00000027053.8|Rdh10|ENSMUSG00000025921.8|retinol dehydrogenase 10 (all-trans)
mm39_v1_chr4_-_135000109_135000130	0.2476341055622145	AAUACUG	ENSMUST00000037099.9|Clic4|ENSMUSG00000037242.9|chloride intracellular channel 4 (mitochondrial)
mm39_v1_chr12_-_112893382_112893398	0.24596132569805884	AAUACUG	ENSMUST00000075827.5|Jag2|ENSMUSG00000002799.7|jagged 2
mm39_v1_chr1_-_154975376_154975382	0.24542841437106752	AAUACUG	ENSMUST00000055322.6|Ier5|ENSMUSG00000056708.6|immediate early response 5
mm39_v1_chr3_-_108053396_108053475	0.23953489562455374	AAUACUG	ENSMUST00000000001.5|Gnai3|ENSMUSG00000000001.5|guanine nucleotide binding protein (G protein), alpha inhibiting 3
mm39_v1_chr7_+_27290969_27290981	0.2382203147266813	AAUACUG	ENSMUST00000108344.9|Akt2|ENSMUSG00000004056.16|thymoma viral proto-oncogene 2
mm39_v1_chr18_+_73706115_73706115	0.23083857388549964	AAUACUG	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr7_-_84328553_84328609	0.22118181755931685	AAUACUG	ENSMUST00000069537.3|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000207865.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000178385.9|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6	ENSMUST00000208782.2|Zfand6|ENSMUSG00000030629.16|zinc finger, AN1-type domain 6
mm39_v1_chr18_+_77032080_77032145	0.21840845674406592	AAUACUG	ENSMUST00000026485.15|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000150990.9|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000148955.3|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2
mm39_v1_chr12_+_55883101_55883146	0.21699873606814862	AAUACUG	ENSMUST00000059250.8|Brms1l|ENSMUSG00000012076.9|breast cancer metastasis-suppressor 1-like
mm39_v1_chr18_+_69478790_69478882	0.21629589595395357	AAUACUG	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr11_-_106107132_106107189	0.21613755080626798	AAUACUG	ENSMUST00000002043.10|Ccdc47|ENSMUSG00000078622.9|coiled-coil domain containing 47
mm39_v1_chr6_-_119394634_119394668	0.21591774362051688	AAUACUG	ENSMUST00000032272.13|Adipor2|ENSMUSG00000030168.14|adiponectin receptor 2
mm39_v1_chr13_-_94422337_94422409	0.21354127945598786	AAUACUG	ENSMUST00000022197.15|Scamp1|ENSMUSG00000021687.15|secretory carrier membrane protein 1	ENSMUST00000152555.8|Scamp1|ENSMUSG00000021687.15|secretory carrier membrane protein 1
mm39_v1_chr4_-_154721288_154721330	0.21096135676866926	AAUACUG	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr10_+_39245746_39245808	0.21019727513088368	AAUACUG	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr6_-_148847854_148847995	0.21015408323997056	AAUACUG	ENSMUST00000139355.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000146457.2|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000054080.15|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr13_+_24985640_24985640	0.20925996327754276	AAUACUG	ENSMUST00000019276.12|BC005537|ENSMUSG00000019132.12|cDNA sequence BC005537
mm39_v1_chr12_-_111679618_111679691	0.2018369344985316	AAUACUG	ENSMUST00000054636.7|Bag5|ENSMUSG00000049792.7|BCL2-associated athanogene 5
mm39_v1_chr5_-_21087023_21087122	0.20169405856647765	AAUACUG	ENSMUST00000118174.8|Phtf2|ENSMUSG00000039987.16|putative homeodomain transcription factor 2
mm39_v1_chr11_+_87938519_87938554	0.20001879000704118	AAUACUG	ENSMUST00000079866.11|Srsf1|ENSMUSG00000018379.18|serine and arginine-rich splicing factor 1
mm39_v1_chr1_-_16689660_16689713	0.199200578816263	AAUACUG	ENSMUST00000117146.9|Ube2w|ENSMUSG00000025939.20|ubiquitin-conjugating enzyme E2W (putative)
mm39_v1_chr5_-_23821523_23821596	0.18788440226024952	AAUACUG	ENSMUST00000088392.9|Srpk2|ENSMUSG00000062604.12|serine/arginine-rich protein specific kinase 2
mm39_v1_chr11_-_93859064_93859119	0.18507805528710425	AAUACUG	ENSMUST00000107844.3|Nme1|ENSMUSG00000037601.12|NME/NM23 nucleoside diphosphate kinase 1	ENSMUST00000170303.2|Gm20390|ENSMUSG00000091228.2|predicted gene 20390
mm39_v1_chr8_+_80366247_80366333	0.1843461882618598	AAUACUG	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr3_-_50398027_50398063	0.1814008976619827	AAUACUG	ENSMUST00000029297.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	ENSMUST00000194462.6|Slc7a11|ENSMUSG00000027737.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm39_v1_chr3_+_32490300_32490300	0.1797988925211169	AAUACUG	ENSMUST00000029201.14|Pik3ca|ENSMUSG00000027665.14|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
mm39_v1_chr15_-_96597610_96597617	0.1793829241220911	AAUACUG	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr11_+_80099843_80099884	0.17861018461999917	AAUACUG	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr3_-_144275897_144275989	0.17714374007237008	AAUACUG	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr12_-_85386120_85386169	0.17640280279106857	AAUACUG	ENSMUST00000040992.8|Nek9|ENSMUSG00000034290.10|NIMA (never in mitosis gene a)-related expressed kinase 9
mm39_v1_chr5_-_149559667_149559678	0.16746753698132477	AAUACUG	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr13_-_43634695_43634823	0.1671668636511578	AAUACUG	ENSMUST00000144326.4|Ranbp9|ENSMUSG00000038546.10|RAN binding protein 9
mm39_v1_chr6_-_92191878_92191906	0.16701337391367177	AAUACUG	ENSMUST00000014694.11|Rbsn|ENSMUSG00000014550.15|rabenosyn, RAB effector
mm39_v1_chr19_+_7394951_7395015	0.16587481191473372	AAUACUG	ENSMUST00000159348.3|2700081O15Rik|ENSMUSG00000053080.11|RIKEN cDNA 2700081O15 gene
mm39_v1_chr2_+_153583194_153583214	0.16505300011176774	AAUACUG	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr12_-_13299197_13299224	0.16287630472111583	AAUACUG	ENSMUST00000071103.10|Ddx1|ENSMUSG00000037149.11|DEAD box helicase 1
mm39_v1_chr18_-_35087355_35087413	0.16268637355720444	AAUACUG	ENSMUST00000025217.11|Hspa9|ENSMUSG00000024359.11|heat shock protein 9
mm39_v1_chrX_-_55643429_55643467	0.16121562155302718	AAUACUG	ENSMUST00000059899.3|Mmgt1|ENSMUSG00000061273.4|membrane magnesium transporter 1
mm39_v1_chr13_-_120252337_120252425	0.16071587070583798	AAUACUG	ENSMUST00000177916.8|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131	ENSMUST00000178271.3|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131	ENSMUST00000223722.2|Zfp131|ENSMUSG00000094870.9|zinc finger protein 131
mm39_v1_chr2_+_163836880_163836880	0.15568615188612236	AAUACUG	ENSMUST00000018470.10|Ywhab|ENSMUSG00000018326.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm39_v1_chr8_-_125675901_125676110	0.15557697976442966	AAUACUG	ENSMUST00000034469.7|Egln1|ENSMUSG00000031987.7|egl-9 family hypoxia-inducible factor 1
mm39_v1_chr5_+_73648368_73648452	0.15488346640295908	AAUACUG	ENSMUST00000113558.8|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	ENSMUST00000063882.12|Dcun1d4|ENSMUSG00000051674.16|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm39_v1_chr8_-_94739469_94739479	0.15206521099554954	AAUACUG	ENSMUST00000053766.14|Amfr|ENSMUSG00000031751.15|autocrine motility factor receptor
mm39_v1_chr15_-_25413838_25413863	0.15200511452641063	AAUACUG	ENSMUST00000058845.9|Basp1|ENSMUSG00000045763.9|brain abundant, membrane attached signal protein 1
mm39_v1_chr2_-_26823793_26823940	0.1519290196682193	AAUACUG	ENSMUST00000154651.2|Surf4|ENSMUSG00000014867.10|surfeit gene 4	ENSMUST00000015011.10|Surf4|ENSMUSG00000014867.10|surfeit gene 4
mm39_v1_chr15_-_103148239_103148297	0.1500041823001166	AAUACUG	ENSMUST00000118152.8|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr3_+_94882038_94882064	0.14935098187682458	AAUACUG	ENSMUST00000072287.12|Pi4kb|ENSMUSG00000038861.15|phosphatidylinositol 4-kinase beta
mm39_v1_chr13_+_108452866_108452892	0.14746173882584646	AAUACUG	ENSMUST00000051594.12|Depdc1b|ENSMUSG00000021697.13|DEP domain containing 1B
mm39_v1_chr9_-_114219685_114219755	0.1469123210041875	AAUACUG	ENSMUST00000084881.5|Crtap|ENSMUSG00000032431.7|cartilage associated protein
mm39_v1_chr13_-_30170031_30170048	0.146065342673938	AAUACUG	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chr2_+_167922924_167922956	0.14232167366619922	AAUACUG	ENSMUST00000052125.7|Pard6b|ENSMUSG00000044641.8|par-6 family cell polarity regulator beta
mm39_v1_chr11_-_49603501_49603555	0.14151233291021184	AAUACUG	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr2_-_125701059_125701141	0.1403264178388375	AAUACUG	ENSMUST00000110463.8|Cops2|ENSMUSG00000027206.14|COP9 signalosome subunit 2	ENSMUST00000028635.6|Cops2|ENSMUSG00000027206.14|COP9 signalosome subunit 2
mm39_v1_chr9_+_32607301_32607417	0.14017834637541873	AAUACUG	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr5_+_21942139_21942177	0.13989300106143582	AAUACUG	ENSMUST00000030882.12|Pmpcb|ENSMUSG00000029017.14|peptidase (mitochondrial processing) beta
mm39_v1_chr11_-_120524362_120524431	0.1374122115341957	AAUACUG	ENSMUST00000058162.14|Mafg|ENSMUSG00000051510.14|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm39_v1_chr6_+_100810566_100810624	0.13640970574098327	AAUACUG	ENSMUST00000063854.7|Ppp4r2|ENSMUSG00000052144.9|protein phosphatase 4, regulatory subunit 2
mm39_v1_chr19_+_40819682_40819757	0.136003951563131	AAUACUG	ENSMUST00000025983.13|Ccnj|ENSMUSG00000025010.15|cyclin J	ENSMUST00000119316.2|Ccnj|ENSMUSG00000025010.15|cyclin J
mm39_v1_chr4_+_150938376_150938525	0.1352671906440332	AAUACUG	ENSMUST00000073600.9|Errfi1|ENSMUSG00000028967.11|ERBB receptor feedback inhibitor 1
mm39_v1_chr2_+_116951855_116951880	0.13353409979281725	AAUACUG	ENSMUST00000028829.13|Spred1|ENSMUSG00000027351.15|sprouty protein with EVH-1 domain 1, related sequence
mm39_v1_chr6_-_148732946_148732992	0.13335189792244734	AAUACUG	ENSMUST00000048418.14|Ipo8|ENSMUSG00000040029.16|importin 8
mm39_v1_chr1_+_82817170_82817239	0.13254899995867175	AAUACUG	ENSMUST00000189220.7|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1	ENSMUST00000113444.8|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
mm39_v1_chr1_-_16727067_16727121	0.13135016601608532	AAUACUG	ENSMUST00000188641.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr13_+_104424359_104424432	0.12999179956793777	AAUACUG	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr5_-_114518566_114518581	0.1288057394856756	AAUACUG	ENSMUST00000102581.11|Kctd10|ENSMUSG00000001098.16|potassium channel tetramerisation domain containing 10
mm39_v1_chr12_-_30961570_30961624	0.12869302204079738	AAUACUG	ENSMUST00000062740.15|Acp1|ENSMUSG00000044573.17|acid phosphatase 1, soluble	ENSMUST00000074038.7|Acp1|ENSMUSG00000044573.17|acid phosphatase 1, soluble
mm39_v1_chr2_-_157408239_157408281	0.1259187255513841	AAUACUG	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr10_-_21036792_21036810	0.12354128059550216	AAUACUG	ENSMUST00000188495.8|Myb|ENSMUSG00000019982.16|myeloblastosis oncogene
mm39_v1_chr8_-_23747023_23747047	0.12264859929595795	AAUACUG	ENSMUST00000121783.7|Golga7|ENSMUSG00000015341.18|golgi autoantigen, golgin subfamily a, 7
mm39_v1_chr17_-_80203457_80203552	0.1220620656266834	AAUACUG	ENSMUST00000068282.7|Atl2|ENSMUSG00000059811.14|atlastin GTPase 2	ENSMUST00000112437.8|Atl2|ENSMUSG00000059811.14|atlastin GTPase 2
mm39_v1_chr5_-_121329385_121329501	0.11977421466162232	AAUACUG	ENSMUST00000054547.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11	ENSMUST00000100770.9|Ptpn11|ENSMUSG00000043733.15|protein tyrosine phosphatase, non-receptor type 11
mm39_v1_chr17_-_46867083_46867114	0.11958340445386877	AAUACUG	ENSMUST00000015749.7|Srf|ENSMUSG00000015605.7|serum response factor
mm39_v1_chr11_-_22932090_22932382	0.1195562723045222	AAUACUG	ENSMUST00000160826.2|Commd1b|ENSMUSG00000098650.2|COMM domain containing 1B	ENSMUST00000093270.6|Commd1|ENSMUSG00000051355.19|COMM domain containing 1	ENSMUST00000071068.9|Commd1|ENSMUSG00000051355.19|COMM domain containing 1	ENSMUST00000159081.8|Commd1|ENSMUSG00000051355.19|COMM domain containing 1
mm39_v1_chr2_+_91287846_91287894	0.11758770488719889	AAUACUG	ENSMUST00000028689.4|Lrp4|ENSMUSG00000027253.16|low density lipoprotein receptor-related protein 4
mm39_v1_chrX_+_93410754_93410789	0.11721991328940728	AAUACUG	ENSMUST00000113897.9|Apoo|ENSMUSG00000079508.9|apolipoprotein O	ENSMUST00000113896.8|Apoo|ENSMUSG00000079508.9|apolipoprotein O	ENSMUST00000113895.2|Apoo|ENSMUSG00000079508.9|apolipoprotein O
mm39_v1_chr4_-_134014525_134014575	0.11575872288756264	AAUACUG	ENSMUST00000145006.8|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105877.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000127857.2|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105876.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like
mm39_v1_chr2_+_160573604_160573691	0.11347985931576941	AAUACUG	ENSMUST00000174885.2|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1	ENSMUST00000109462.8|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1
mm39_v1_chr19_+_60744385_60744432	0.11333942276050442	AAUACUG	ENSMUST00000088237.6|Nanos1|ENSMUSG00000072437.5|nanos C2HC-type zinc finger 1
mm39_v1_chr1_+_43137852_43137871	0.11307874859451648	AAUACUG	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chrX_+_13147209_13147270	0.11110628388172057	AAUACUG	ENSMUST00000000804.7|Ddx3x|ENSMUSG00000000787.13|DEAD box helicase 3, X-linked
mm39_v1_chr10_-_90918515_90918525	0.11060505588689093	AAUACUG	ENSMUST00000159110.8|Apaf1|ENSMUSG00000019979.13|apoptotic peptidase activating factor 1
mm39_v1_chr9_-_56151334_56151382	0.11008340421541687	AAUACUG	ENSMUST00000188142.7|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr8_+_106937568_106937606	0.1088112553894526	AAUACUG	ENSMUST00000071592.12|Prmt7|ENSMUSG00000060098.12|protein arginine N-methyltransferase 7
mm39_v1_chr10_-_92558219_92558286	0.10719135062980874	AAUACUG	ENSMUST00000020163.7|Nedd1|ENSMUSG00000019988.8|neural precursor cell expressed, developmentally down-regulated gene 1
mm39_v1_chr2_-_134486039_134486065	0.10668150876803893	AAUACUG	ENSMUST00000038228.11|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr13_+_104315301_104315374	0.1066038666061181	AAUACUG	ENSMUST00000022225.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23	ENSMUST00000069187.12|Trim23|ENSMUSG00000021712.16|tripartite motif-containing 23
mm39_v1_chr6_+_140568366_140568389	0.10601195277109353	AAUACUG	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chr10_-_127457001_127457031	0.10555450743665551	AAUACUG	ENSMUST00000049149.15|Lrp1|ENSMUSG00000040249.16|low density lipoprotein receptor-related protein 1
mm39_v1_chr10_-_95399997_95400015	0.10543186640603443	AAUACUG	ENSMUST00000020217.7|Nudt4|ENSMUSG00000020029.7|nudix (nucleoside diphosphate linked moiety X)-type motif 4
mm39_v1_chr7_-_120581535_120581556	0.10515684335982499	AAUACUG	ENSMUST00000033169.9|Cdr2|ENSMUSG00000030878.12|cerebellar degeneration-related 2
mm39_v1_chr17_+_74645936_74646032	0.10465219875153395	AAUACUG	ENSMUST00000224711.2|Spast|ENSMUSG00000024068.9|spastin	ENSMUST00000024869.8|Spast|ENSMUSG00000024068.9|spastin	ENSMUST00000233611.2|Spast|ENSMUSG00000024068.9|spastin
mm39_v1_chr12_+_81906738_81906814	0.10386409666157266	AAUACUG	ENSMUST00000221721.2|Pcnx|ENSMUSG00000021140.10|pecanex homolog	ENSMUST00000021567.6|Pcnx|ENSMUSG00000021140.10|pecanex homolog
mm39_v1_chr8_+_88845375_88845405	0.10277831326305403	AAUACUG	ENSMUST00000095214.10|Cnep1r1|ENSMUSG00000036810.17|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm39_v1_chr12_+_78908466_78908593	0.10199992698836334	AAUACUG	ENSMUST00000071230.8|Eif2s1|ENSMUSG00000021116.11|eukaryotic translation initiation factor 2, subunit 1 alpha
mm39_v1_chr12_-_59058780_59058820	0.10195368960141765	AAUACUG	ENSMUST00000021375.12|Sec23a|ENSMUSG00000020986.14|SEC23 homolog A, COPII coat complex component
mm39_v1_chr6_-_22356098_22356174	0.10132306633375555	AAUACUG	ENSMUST00000165576.8|Fam3c|ENSMUSG00000029672.17|family with sequence similarity 3, member C
mm39_v1_chr5_+_123214332_123214418	0.10097208809769152	AAUACUG	ENSMUST00000067505.15|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000111619.10|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000160344.2|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B
mm39_v1_chr8_+_85696216_85696282	0.10090574961616657	AAUACUG	ENSMUST00000109734.8|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2	ENSMUST00000005292.15|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2
mm39_v1_chr1_-_106641940_106642062	0.10080409298541931	AAUACUG	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr15_-_77191079_77191128	0.1003812453514525	AAUACUG	ENSMUST00000171751.10|Rbfox2|ENSMUSG00000033565.19|RNA binding protein, fox-1 homolog (C. elegans) 2
mm39_v1_chr1_-_34882131_34882148	0.10015401337842299	AAUACUG	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr18_+_5591864_5591902	0.09803353712509856	AAUACUG	ENSMUST00000025081.13|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1	ENSMUST00000159390.8|Zeb1|ENSMUSG00000024238.16|zinc finger E-box binding homeobox 1
mm39_v1_chr17_+_26895344_26895375	0.09749864759586489	AAUACUG	ENSMUST00000015719.16|Atp6v0e|ENSMUSG00000015575.16|ATPase, H+ transporting, lysosomal V0 subunit E
mm39_v1_chr11_-_76737794_76737871	0.09654027560350623	AAUACUG	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr9_-_59393893_59393919	0.09575488699134974	AAUACUG	ENSMUST00000171975.8|Arih1|ENSMUSG00000025234.12|ariadne RBR E3 ubiquitin protein ligase 1
mm39_v1_chr11_+_57995055_57995192	0.0949619474726822	AAUACUG	ENSMUST00000108843.8|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8	ENSMUST00000134896.2|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8
mm39_v1_chr18_+_35695199_35695313	0.09478242808477703	AAUACUG	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr18_+_46874920_46874966	0.09442596754135235	AAUACUG	ENSMUST00000025357.9|Ap3s1|ENSMUSG00000024480.10|adaptor-related protein complex 3, sigma 1 subunit	ENSMUST00000225520.2|Ap3s1|ENSMUSG00000024480.10|adaptor-related protein complex 3, sigma 1 subunit
mm39_v1_chr14_+_121148625_121148665	0.0943683273781647	AAUACUG	ENSMUST00000032898.9|Ipo5|ENSMUSG00000030662.11|importin 5
mm39_v1_chr12_+_69230931_69230944	0.09418989854570364	AAUACUG	ENSMUST00000060579.10|Mgat2|ENSMUSG00000043998.11|mannoside acetylglucosaminyltransferase 2
mm39_v1_chrX_-_168103266_168103379	0.0938668337368682	AAUACUG	ENSMUST00000033717.9|Hccs|ENSMUSG00000031352.11|holocytochrome c synthetase	ENSMUST00000112115.2|Hccs|ENSMUSG00000031352.11|holocytochrome c synthetase
mm39_v1_chr6_+_65019574_65019651	0.09256458581728876	AAUACUG	ENSMUST00000031984.9|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	ENSMUST00000205118.3|Smarcad1|ENSMUSG00000029920.10|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
mm39_v1_chr1_-_52539395_52539459	0.0923447833696292	AAUACUG	ENSMUST00000186764.7|Nab1|ENSMUSG00000002881.15|Ngfi-A binding protein 1
mm39_v1_chr11_+_94881861_94881916	0.0919916507947717	AAUACUG	ENSMUST00000038696.12|Ppp1r9b|ENSMUSG00000038976.13|protein phosphatase 1, regulatory subunit 9B
mm39_v1_chr17_+_35113490_35113554	0.09173344904827599	AAUACUG	ENSMUST00000052778.10|Zbtb12|ENSMUSG00000049823.10|zinc finger and BTB domain containing 12
mm39_v1_chr5_+_31398208_31398285	0.09057597691717327	AAUACUG	ENSMUST00000202576.4|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000031034.12|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000202842.4|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000201259.4|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1	ENSMUST00000202505.2|Nrbp1|ENSMUSG00000029148.16|nuclear receptor binding protein 1
mm39_v1_chr11_+_94102255_94102280	0.09050778199879506	AAUACUG	ENSMUST00000041589.6|Tob1|ENSMUSG00000037573.6|transducer of ErbB-2.1
mm39_v1_chr17_-_46342739_46342789	0.0902817195128196	AAUACUG	ENSMUST00000024747.14|Vegfa|ENSMUSG00000023951.19|vascular endothelial growth factor A
mm39_v1_chr4_+_11704438_11704457	0.09012149240974525	AAUACUG	ENSMUST00000108304.9|Gem|ENSMUSG00000028214.14|GTP binding protein (gene overexpressed in skeletal muscle)
mm39_v1_chr3_-_51184895_51184996	0.08941283401375115	AAUACUG	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr11_+_105927698_105927716	0.08785549509130176	AAUACUG	ENSMUST00000058438.9|Dcaf7|ENSMUSG00000049354.9|DDB1 and CUL4 associated factor 7
mm39_v1_chr8_-_35962641_35962700	0.08644686341468637	AAUACUG	ENSMUST00000033927.8|Eri1|ENSMUSG00000031527.8|exoribonuclease 1
mm39_v1_chrX_+_158315666_158315751	0.08643783672011231	AAUACUG	ENSMUST00000057180.13|Bclaf3|ENSMUSG00000044150.13|Bclaf1 and Thrap3 family member 3
mm39_v1_chr11_-_90281721_90281753	0.08510682651773914	AAUACUG	ENSMUST00000004051.8|Hlf|ENSMUSG00000003949.17|hepatic leukemia factor
mm39_v1_chr10_+_92996686_92996756	0.08454196217539836	AAUACUG	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr14_-_26693189_26693189	0.08434381016724248	AAUACUG	ENSMUST00000036570.5|Appl1|ENSMUSG00000040760.12|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm39_v1_chr1_-_178165223_178165362	0.08335839172467735	AAUACUG	ENSMUST00000037748.9|Hnrnpu|ENSMUSG00000039630.11|heterogeneous nuclear ribonucleoprotein U
mm39_v1_chr16_-_75563645_75563709	0.08335536872235218	AAUACUG	ENSMUST00000114244.2|Hspa13|ENSMUSG00000032932.16|heat shock protein 70 family, member 13	ENSMUST00000046283.16|Hspa13|ENSMUSG00000032932.16|heat shock protein 70 family, member 13
mm39_v1_chr3_+_151916059_151916102	0.08272451847797979	AAUACUG	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr9_-_31123083_31123120	0.08227307012169797	AAUACUG	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr5_-_123822351_123822442	0.08208060703396172	AAUACUG	ENSMUST00000111564.8|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1	ENSMUST00000063905.12|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr4_-_82423985_82424044	0.08195501891329456	AAUACUG	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr6_-_145195903_145195988	0.0814250188272785	AAUACUG	ENSMUST00000111710.8|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000155145.2|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000032399.12|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000203147.3|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog
mm39_v1_chr2_+_121859025_121859137	0.08117823094278878	AAUACUG	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chrX_+_163202852_163202905	0.07947840397591938	AAUACUG	ENSMUST00000112255.8|Piga|ENSMUSG00000031381.17|phosphatidylinositol glycan anchor biosynthesis, class A
mm39_v1_chr7_-_109585649_109585676	0.07870085242901698	AAUACUG	ENSMUST00000094097.12|Tmem41b|ENSMUSG00000047554.15|transmembrane protein 41B
mm39_v1_chr11_-_97635484_97635571	0.07658949804531703	AAUACUG	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chr10_-_118705029_118705091	0.07655099631185797	AAUACUG	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr14_-_70588803_70588914	0.07652722269685829	AAUACUG	ENSMUST00000143153.2|Slc39a14|ENSMUSG00000022094.16|solute carrier family 39 (zinc transporter), member 14	ENSMUST00000127000.2|Slc39a14|ENSMUSG00000022094.16|solute carrier family 39 (zinc transporter), member 14	ENSMUST00000068044.14|Slc39a14|ENSMUSG00000022094.16|solute carrier family 39 (zinc transporter), member 14	ENSMUST00000022688.10|Slc39a14|ENSMUSG00000022094.16|solute carrier family 39 (zinc transporter), member 14
mm39_v1_chr2_+_4886298_4886395	0.07616763482556456	AAUACUG	ENSMUST00000027973.14|Sephs1|ENSMUSG00000026662.14|selenophosphate synthetase 1
mm39_v1_chr8_-_87472562_87472682	0.07591547020133815	AAUACUG	ENSMUST00000045296.6|Siah1a|ENSMUSG00000036840.6|siah E3 ubiquitin protein ligase 1A
mm39_v1_chr13_-_46118433_46118477	0.07527045372591125	AAUACUG	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr16_-_31821938_31822105	0.07404484704259467	AAUACUG	ENSMUST00000023457.13|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5	ENSMUST00000231360.2|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5
mm39_v1_chr7_+_34818709_34818728	0.07343828718878675	AAUACUG	ENSMUST00000205391.2|Cebpa|ENSMUSG00000034957.11|CCAAT/enhancer binding protein (C/EBP), alpha	ENSMUST00000042985.11|Cebpa|ENSMUSG00000034957.11|CCAAT/enhancer binding protein (C/EBP), alpha
mm39_v1_chr9_+_20563386_20563401	0.07325298721414625	AAUACUG	ENSMUST00000034689.8|Pin1|ENSMUSG00000032171.8|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm39_v1_chr2_+_4405769_4405786	0.07276988952726955	AAUACUG	ENSMUST00000075767.14|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr12_-_59266511_59266563	0.07209509612434194	AAUACUG	ENSMUST00000043204.8|Fbxo33|ENSMUSG00000035329.8|F-box protein 33
mm39_v1_chr18_-_35064906_35065066	0.0715984704699987	AAUACUG	ENSMUST00000025218.8|Etf1|ENSMUSG00000024360.9|eukaryotic translation termination factor 1
mm39_v1_chr4_+_120711974_120712041	0.07158065050225192	AAUACUG	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chr13_+_35843816_35843853	0.07124623428799916	AAUACUG	ENSMUST00000075220.14|Cdyl|ENSMUSG00000059288.15|chromodomain protein, Y chromosome-like
mm39_v1_chr17_+_7437500_7437532	0.0710601390231145	AAUACUG	ENSMUST00000024575.8|Rps6ka2|ENSMUSG00000023809.11|ribosomal protein S6 kinase, polypeptide 2
mm39_v1_chrX_-_163763273_163763333	0.07021873549235348	AAUACUG	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr9_-_35179042_35179101	0.0699423325325989	AAUACUG	ENSMUST00000217306.2|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000125087.2|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000121564.8|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000063782.12|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B	ENSMUST00000059057.14|Fam118b|ENSMUSG00000050471.18|family with sequence similarity 118, member B
mm39_v1_chr6_+_108760025_108760096	0.06984138554244561	AAUACUG	ENSMUST00000032196.9|Arl8b|ENSMUSG00000030105.9|ADP-ribosylation factor-like 8B
mm39_v1_chr1_+_171197913_171197927	0.06984124337165258	AAUACUG	ENSMUST00000006578.10|Nectin4|ENSMUSG00000006411.13|nectin cell adhesion molecule 4	ENSMUST00000094325.5|Nectin4|ENSMUSG00000006411.13|nectin cell adhesion molecule 4
mm39_v1_chr2_+_155223728_155223804	0.06936529490616503	AAUACUG	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr12_+_78795763_78795793	0.06906932447298365	AAUACUG	ENSMUST00000082024.7|Mpp5|ENSMUSG00000021112.10|membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)
mm39_v1_chr5_+_135052336_135052363	0.06737242296193659	AAUACUG	ENSMUST00000005509.11|Stx1a|ENSMUSG00000007207.11|syntaxin 1A (brain)	ENSMUST00000201008.4|Stx1a|ENSMUSG00000007207.11|syntaxin 1A (brain)
mm39_v1_chr1_+_85721132_85721262	0.06615939597897819	AAUACUG	ENSMUST00000113360.8|Cab39|ENSMUSG00000036707.17|calcium binding protein 39	ENSMUST00000126962.3|Cab39|ENSMUSG00000036707.17|calcium binding protein 39
mm39_v1_chrX_-_103457431_103457463	0.06587749224675284	AAUACUG	ENSMUST00000033695.6|Abcb7|ENSMUSG00000031333.8|ATP-binding cassette, sub-family B (MDR/TAP), member 7
mm39_v1_chr11_+_74661647_74661733	0.06442877601647196	AAUACUG	ENSMUST00000010698.13|Mettl16|ENSMUSG00000010554.15|methyltransferase like 16	ENSMUST00000141755.8|Mettl16|ENSMUSG00000010554.15|methyltransferase like 16
mm39_v1_chr11_+_59553296_59553369	0.0633418612755677	AAUACUG	ENSMUST00000072031.13|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000066330.15|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000108751.8|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein	ENSMUST00000116371.8|Mprip|ENSMUSG00000005417.18|myosin phosphatase Rho interacting protein
mm39_v1_chr10_-_44334711_44334747	0.06291002477736632	AAUACUG	ENSMUST00000039174.11|Prdm1|ENSMUSG00000038151.14|PR domain containing 1, with ZNF domain
mm39_v1_chr7_+_120276801_120276868	0.06284067944056602	AAUACUG	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr18_-_39623698_39623771	0.06265211822108921	AAUACUG	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr17_-_78725510_78725581	0.06250117582612268	AAUACUG	ENSMUST00000234029.2|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000234530.2|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000234052.2|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000070039.14|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)	ENSMUST00000112487.3|Fez2|ENSMUSG00000056121.17|fasciculation and elongation protein zeta 2 (zygin II)
mm39_v1_chr18_+_36414122_36414204	0.061171039992701036	AAUACUG	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chrX_+_20291927_20292002	0.06005016933916498	AAUACUG	ENSMUST00000115384.9|Jade3|ENSMUSG00000037315.16|jade family PHD finger 3
mm39_v1_chr11_-_98478018_98478194	0.05982721087600323	AAUACUG	ENSMUST00000052919.8|Ormdl3|ENSMUSG00000038150.8|ORM1-like 3 (S. cerevisiae)
mm39_v1_chr2_+_31135813_31135913	0.05903540228643718	AAUACUG	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr3_+_52948938_52949004	0.05879584396931817	AAUACUG	ENSMUST00000059562.14|Lhfp|ENSMUSG00000048332.14|lipoma HMGIC fusion partner	ENSMUST00000147139.2|Lhfp|ENSMUSG00000048332.14|lipoma HMGIC fusion partner
mm39_v1_chr15_-_31531122_31531215	0.058555876600855004	AAUACUG	ENSMUST00000090227.6|Marchf6|ENSMUSG00000039100.11|membrane associated ring-CH-type finger 6
mm39_v1_chr11_+_32592707_32592875	0.05833703713304027	AAUACUG	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr18_+_34910064_34910128	0.05772906470365234	AAUACUG	ENSMUST00000043775.9|Kdm3b|ENSMUSG00000038773.12|KDM3B lysine (K)-specific demethylase 3B	ENSMUST00000224715.2|Kdm3b|ENSMUSG00000038773.12|KDM3B lysine (K)-specific demethylase 3B
mm39_v1_chr8_-_8711211_8711250	0.05735900828096162	AAUACUG	ENSMUST00000001319.15|Efnb2|ENSMUSG00000001300.17|ephrin B2
mm39_v1_chr13_+_16189041_16189060	0.0572308745159018	AAUACUG	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr7_+_24602337_24602510	0.05690868183587507	AAUACUG	ENSMUST00000117796.8|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000047873.16|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000098683.11|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000206508.2|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1	ENSMUST00000206028.2|Arhgef1|ENSMUSG00000040940.19|Rho guanine nucleotide exchange factor (GEF) 1
mm39_v1_chrX_+_70599524_70599616	0.056866712385073105	AAUACUG	ENSMUST00000072699.13|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3	ENSMUST00000114582.9|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3	ENSMUST00000015361.11|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3	ENSMUST00000088874.10|Hmgb3|ENSMUSG00000015217.12|high mobility group box 3
mm39_v1_chr2_+_31462780_31462841	0.05686345599409684	AAUACUG	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr18_-_84969601_84969661	0.05564473806213145	AAUACUG	ENSMUST00000025547.4|Timm21|ENSMUSG00000024645.6|translocase of inner mitochondrial membrane 21
mm39_v1_chrX_+_55500170_55500264	0.05435678758812238	AAUACUG	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr12_+_65012564_65012714	0.05355668423142007	AAUACUG	ENSMUST00000066296.9|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1	ENSMUST00000223166.2|Togaram1|ENSMUSG00000035614.12|TOG array regulator of axonemal microtubules 1
mm39_v1_chr5_+_129970882_129970968	0.053343850265603704	AAUACUG	ENSMUST00000201855.2|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1	ENSMUST00000073945.6|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1
mm39_v1_chr16_-_22258469_22258484	0.052096542007816965	AAUACUG	ENSMUST00000079601.13|Etv5|ENSMUSG00000013089.16|ets variant 5
mm39_v1_chr7_+_65759198_65759263	0.051989309854562224	AAUACUG	ENSMUST00000036372.8|Chsy1|ENSMUSG00000032640.11|chondroitin sulfate synthase 1
mm39_v1_chr10_-_94780695_94780724	0.05145681510671444	AAUACUG	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr7_-_121306476_121306685	0.051419817017449694	AAUACUG	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr7_+_18659787_18659826	0.05044274849245493	AAUACUG	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr2_+_83474779_83474837	0.050318043155690405	AAUACUG	ENSMUST00000081591.7|Zc3h15|ENSMUSG00000027091.15|zinc finger CCCH-type containing 15
mm39_v1_chr18_+_14916295_14916316	0.049980154728708606	AAUACUG	ENSMUST00000234789.2|Taf4b|ENSMUSG00000054321.8|TATA-box binding protein associated factor 4b	ENSMUST00000169862.2|Taf4b|ENSMUSG00000054321.8|TATA-box binding protein associated factor 4b
mm39_v1_chr16_+_43960183_43960263	0.04991054030508473	AAUACUG	ENSMUST00000159514.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000161326.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063520.15|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063542.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm39_v1_chr7_-_109092834_109092945	0.049910534845797494	AAUACUG	ENSMUST00000106739.8|Trim66|ENSMUSG00000031026.16|tripartite motif-containing 66
mm39_v1_chr16_+_56942050_56942066	0.04981417619313071	AAUACUG	ENSMUST00000166897.3|Tomm70a|ENSMUSG00000022752.10|translocase of outer mitochondrial membrane 70A
mm39_v1_chr14_+_30973407_30973489	0.04915957168707953	AAUACUG	ENSMUST00000022458.11|Bap1|ENSMUSG00000021901.11|Brca1 associated protein 1
mm39_v1_chr3_-_51468236_51468300	0.04900181692626905	AAUACUG	ENSMUST00000037141.9|Setd7|ENSMUSG00000037111.10|SET domain containing (lysine methyltransferase) 7
mm39_v1_chr14_-_98406977_98407031	0.04864275417647639	AAUACUG	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr13_+_110531571_110531591	0.04861509176585024	AAUACUG	ENSMUST00000022212.9|Plk2|ENSMUSG00000021701.9|polo like kinase 2
mm39_v1_chr1_-_52272370_52272391	0.04843726638305471	AAUACUG	ENSMUST00000114513.9|Gls|ENSMUSG00000026103.15|glutaminase	ENSMUST00000114510.8|Gls|ENSMUSG00000026103.15|glutaminase
mm39_v1_chr5_+_140593075_140593107	0.04815408787425831	AAUACUG	ENSMUST00000031555.3|Lfng|ENSMUSG00000029570.6|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm39_v1_chr17_-_88105422_88105476	0.04777615205981667	AAUACUG	ENSMUST00000055221.9|Kcnk12|ENSMUSG00000050138.9|potassium channel, subfamily K, member 12
mm39_v1_chr10_+_80591030_80591073	0.047637202962931814	AAUACUG	ENSMUST00000105336.9|Dot1l|ENSMUSG00000061589.15|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm39_v1_chr15_-_89199456_89199515	0.0469104899049268	AAUACUG	ENSMUST00000144585.9|Sbf1|ENSMUSG00000036529.18|SET binding factor 1	ENSMUST00000123791.8|Sbf1|ENSMUSG00000036529.18|SET binding factor 1
mm39_v1_chr5_+_124767114_124767162	0.04675321449618632	AAUACUG	ENSMUST00000037865.13|Atp6v0a2|ENSMUSG00000038023.13|ATPase, H+ transporting, lysosomal V0 subunit A2
mm39_v1_chr7_-_90106375_90106437	0.045761485533354865	AAUACUG	ENSMUST00000032844.7|Tmem126a|ENSMUSG00000030615.13|transmembrane protein 126A
mm39_v1_chr15_+_32920869_32920972	0.045394738545343004	AAUACUG	ENSMUST00000022871.7|Sdc2|ENSMUSG00000022261.7|syndecan 2
mm39_v1_chr12_+_8724129_8724150	0.04530963775748741	AAUACUG	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr16_+_64672334_64672437	0.04475916780828128	AAUACUG	ENSMUST00000067744.8|Cggbp1|ENSMUSG00000054604.8|CGG triplet repeat binding protein 1
mm39_v1_chr10_+_69369590_69369603	0.043752756225028354	AAUACUG	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr11_+_76092833_76092858	0.04342903324152779	AAUACUG	ENSMUST00000094014.10|Tlcd3a|ENSMUSG00000069808.14|TLC domain containing 3A
mm39_v1_chr2_-_152239966_152239997	0.04287023022705084	AAUACUG	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr16_-_31019967_31020064	0.04284619781511702	AAUACUG	ENSMUST00000230614.2|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	ENSMUST00000058033.9|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm39_v1_chrX_+_141464393_141464425	0.04274893958991181	AAUACUG	ENSMUST00000112889.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000101198.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000112891.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000087333.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164
mm39_v1_chr5_-_147662798_147662833	0.04263298244672029	AAUACUG	ENSMUST00000110529.6|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1	ENSMUST00000031653.12|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1
mm39_v1_chr1_-_38168697_38168760	0.042355539788697015	AAUACUG	ENSMUST00000027251.12|Rev1|ENSMUSG00000026082.12|REV1, DNA directed polymerase
mm39_v1_chr12_+_110704378_110704459	0.04195189926556817	AAUACUG	ENSMUST00000193053.6|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20	ENSMUST00000095410.8|Wdr20|ENSMUSG00000037957.15|WD repeat domain 20
mm39_v1_chr10_-_67120959_67121093	0.041873537527015774	AAUACUG	ENSMUST00000159002.2|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2	ENSMUST00000077839.13|Nrbf2|ENSMUSG00000075000.12|nuclear receptor binding factor 2
mm39_v1_chr3_-_143910926_143910981	0.041629878620116516	AAUACUG	ENSMUST00000120539.8|Lmo4|ENSMUSG00000028266.18|LIM domain only 4	ENSMUST00000196264.5|Lmo4|ENSMUSG00000028266.18|LIM domain only 4
mm39_v1_chr1_-_9770434_9770554	0.041163717887172574	AAUACUG	ENSMUST00000088658.11|Mybl1|ENSMUSG00000025912.17|myeloblastosis oncogene-like 1
mm39_v1_chrX_+_74557905_74557946	0.04071201271846928	AAUACUG	ENSMUST00000114070.10|Vbp1|ENSMUSG00000031197.12|von Hippel-Lindau binding protein 1	ENSMUST00000033540.6|Vbp1|ENSMUSG00000031197.12|von Hippel-Lindau binding protein 1
mm39_v1_chr17_-_81035453_81035522	0.04022729310718239	AAUACUG	ENSMUST00000234133.2|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000112389.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000025089.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3
mm39_v1_chr3_-_9675130_9675146	0.03992818338830611	AAUACUG	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr6_+_120643323_120643386	0.03943165400051083	AAUACUG	ENSMUST00000112686.8|Cecr2|ENSMUSG00000071226.12|CECR2, histone acetyl-lysine reader
mm39_v1_chr4_-_129083335_129083387	0.03786952867633205	AAUACUG	ENSMUST00000106061.9|S100pbp|ENSMUSG00000040928.16|S100P binding protein	ENSMUST00000072431.13|S100pbp|ENSMUSG00000040928.16|S100P binding protein
mm39_v1_chr19_-_46384158_46384199	0.03697492288431046	AAUACUG	ENSMUST00000237742.2|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha	ENSMUST00000040270.6|Actr1a|ENSMUSG00000025228.6|ARP1 actin-related protein 1A, centractin alpha
mm39_v1_chr19_+_32734884_32734900	0.0369146992506306	AAUACUG	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr8_+_95393228_95393304	0.03642757142533391	AAUACUG	ENSMUST00000034228.16|Arl2bp|ENSMUSG00000031776.18|ADP-ribosylation factor-like 2 binding protein
mm39_v1_chr3_+_68375495_68375542	0.03538078156750404	AAUACUG	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr4_-_109333866_109333924	0.035091732188696254	AAUACUG	ENSMUST00000030284.10|Rnf11|ENSMUSG00000028557.11|ring finger protein 11
mm39_v1_chr4_-_148711453_148711492	0.03492331087040356	AAUACUG	ENSMUST00000165113.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000172073.8|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000105702.9|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein	ENSMUST00000084125.10|Tardbp|ENSMUSG00000041459.16|TAR DNA binding protein
mm39_v1_chr5_+_142946098_142946131	0.03478172419635343	AAUACUG	ENSMUST00000031565.15|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1	ENSMUST00000198017.5|Fscn1|ENSMUSG00000029581.15|fascin actin-bundling protein 1
mm39_v1_chr18_+_23548455_23548511	0.03441808657456973	AAUACUG	ENSMUST00000115832.4|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr9_-_44679136_44679147	0.03392968604533886	AAUACUG	ENSMUST00000034607.10|Arcn1|ENSMUSG00000032096.17|archain 1
mm39_v1_chr19_+_27194757_27194825	0.0338447560838843	AAUACUG	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr12_-_32111214_32111302	0.033691044093679456	AAUACUG	ENSMUST00000003079.12|Prkar2b|ENSMUSG00000002997.16|protein kinase, cAMP dependent regulatory, type II beta	ENSMUST00000036497.16|Prkar2b|ENSMUSG00000002997.16|protein kinase, cAMP dependent regulatory, type II beta
mm39_v1_chrX_-_42256694_42256715	0.03341567462065395	AAUACUG	ENSMUST00000115058.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1	ENSMUST00000115059.8|Tenm1|ENSMUSG00000016150.16|teneurin transmembrane protein 1
mm39_v1_chrX_+_52001108_52001238	0.03288646751522963	AAUACUG	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chr3_-_146518706_146518768	0.03284728327840172	AAUACUG	ENSMUST00000102515.10|Prkacb|ENSMUSG00000005034.16|protein kinase, cAMP dependent, catalytic, beta
mm39_v1_chr5_-_108022900_108022973	0.032789464656044216	AAUACUG	ENSMUST00000138111.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000112642.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chr8_-_111985824_111985858	0.03239885837391881	AAUACUG	ENSMUST00000169020.8|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1	ENSMUST00000003404.9|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1
mm39_v1_chr8_+_79235946_79236030	0.0321149370122651	AAUACUG	ENSMUST00000209490.2|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7	ENSMUST00000034111.10|Slc10a7|ENSMUSG00000031684.12|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm39_v1_chr17_-_25493273_25493291	0.03190403181092435	AAUACUG	ENSMUST00000172587.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000049911.16|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000173713.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr17_-_34822649_34822676	0.031838893822425184	AAUACUG	ENSMUST00000015622.8|Rnf5|ENSMUSG00000015478.14|ring finger protein 5
mm39_v1_chr2_-_6889783_6889807	0.0312709724693	AAUACUG	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr8_+_112667328_112667341	0.031031842625045304	AAUACUG	ENSMUST00000034428.8|Gabarapl2|ENSMUSG00000031950.8|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2
mm39_v1_chr15_-_100952206_100952280	0.0310297939092948	AAUACUG	ENSMUST00000178140.2|Fignl2|ENSMUSG00000095440.3|fidgetin-like 2
mm39_v1_chr17_+_87415049_87415129	0.030982439160526874	AAUACUG	ENSMUST00000041369.8|Socs5|ENSMUSG00000037104.10|suppressor of cytokine signaling 5	ENSMUST00000234803.2|Socs5|ENSMUSG00000037104.10|suppressor of cytokine signaling 5
mm39_v1_chr8_-_84059048_84059121	0.03073460165881201	AAUACUG	ENSMUST00000177594.8|Elmod2|ENSMUSG00000035151.13|ELMO/CED-12 domain containing 2	ENSMUST00000053902.4|Elmod2|ENSMUSG00000035151.13|ELMO/CED-12 domain containing 2
mm39_v1_chrX_+_37278636_37278722	0.030387886327336338	AAUACUG	ENSMUST00000049740.3|Zbtb33|ENSMUSG00000048047.4|zinc finger and BTB domain containing 33	ENSMUST00000115142.3|Zbtb33|ENSMUSG00000048047.4|zinc finger and BTB domain containing 33	ENSMUST00000131124.2|Zbtb33|ENSMUSG00000048047.4|zinc finger and BTB domain containing 33
mm39_v1_chr14_-_14255588_14255638	0.02930795285998759	AAUACUG	ENSMUST00000022272.14|Kctd6|ENSMUSG00000021752.15|potassium channel tetramerisation domain containing 6
mm39_v1_chr4_-_129636073_129636106	0.02880563236503393	AAUACUG	ENSMUST00000066257.6|Khdrbs1|ENSMUSG00000028790.14|KH domain containing, RNA binding, signal transduction associated 1
mm39_v1_chr3_+_19242274_19242288	0.0282046001263106	AAUACUG	ENSMUST00000130645.8|Mtfr1|ENSMUSG00000027601.14|mitochondrial fission regulator 1
mm39_v1_chr3_+_54600509_54600526	0.02816526042755411	AAUACUG	ENSMUST00000170552.6|Supt20|ENSMUSG00000027751.14|SPT20 SAGA complex component
mm39_v1_chr2_-_112198366_112198381	0.02746192248550296	AAUACUG	ENSMUST00000028551.4|Emc4|ENSMUSG00000027131.4|ER membrane protein complex subunit 4
mm39_v1_chr15_+_80118219_80118265	0.027339195717633612	AAUACUG	ENSMUST00000023048.12|Mief1|ENSMUSG00000022412.15|mitochondrial elongation factor 1
mm39_v1_chr1_-_98023321_98023373	0.02646483261239013	AAUACUG	ENSMUST00000058762.15|Pam|ENSMUSG00000026335.17|peptidylglycine alpha-amidating monooxygenase	ENSMUST00000097625.10|Pam|ENSMUSG00000026335.17|peptidylglycine alpha-amidating monooxygenase
mm39_v1_chr11_-_33113071_33113206	0.02610945570560265	AAUACUG	ENSMUST00000093201.13|Npm1|ENSMUSG00000057113.14|nucleophosmin 1	ENSMUST00000101375.5|Npm1|ENSMUSG00000057113.14|nucleophosmin 1	ENSMUST00000109354.10|Npm1|ENSMUSG00000057113.14|nucleophosmin 1	ENSMUST00000075641.10|Npm1|ENSMUSG00000057113.14|nucleophosmin 1
mm39_v1_chr4_-_84593512_84593631	0.025366208642903496	AAUACUG	ENSMUST00000176612.8|Bnc2|ENSMUSG00000028487.19|basonuclin 2
mm39_v1_chr19_+_38825005_38825056	0.02530613638975749	AAUACUG	ENSMUST00000037302.6|Tbc1d12|ENSMUSG00000048720.9|TBC1D12: TBC1 domain family, member 12
mm39_v1_chr16_-_55850027_55850102	0.024532724218915565	AAUACUG	ENSMUST00000122253.2|Pcnp|ENSMUSG00000071533.12|PEST proteolytic signal containing nuclear protein	ENSMUST00000114444.9|Pcnp|ENSMUSG00000071533.12|PEST proteolytic signal containing nuclear protein
mm39_v1_chr13_-_55477535_55477589	0.02396303374537743	AAUACUG	ENSMUST00000021941.8|Mxd3|ENSMUSG00000021485.15|Max dimerization protein 3
mm39_v1_chrX_+_150127171_150127237	0.023494800458475622	AAUACUG	ENSMUST00000073364.6|Fam120c|ENSMUSG00000025262.9|family with sequence similarity 120, member C
mm39_v1_chr16_+_91855158_91855216	0.023168525667425534	AAUACUG	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr8_-_106074585_106074604	0.023056379510136563	AAUACUG	ENSMUST00000014922.5|Fhod1|ENSMUSG00000014778.11|formin homology 2 domain containing 1
mm39_v1_chr2_-_122544535_122544559	0.022934353922486096	AAUACUG	ENSMUST00000005952.11|Slc30a4|ENSMUSG00000005802.13|solute carrier family 30 (zinc transporter), member 4
mm39_v1_chr9_+_95836797_95836836	0.022773853649316226	AAUACUG	ENSMUST00000034981.14|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1	ENSMUST00000185633.7|Xrn1|ENSMUSG00000032410.14|5'-3' exoribonuclease 1
mm39_v1_chr16_-_50252703_50252772	0.022473749754838894	AAUACUG	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr4_-_131939548_131939614	0.022450625399826788	AAUACUG	ENSMUST00000152796.8|Ythdf2|ENSMUSG00000040025.18|YTH N6-methyladenosine RNA binding protein 2
mm39_v1_chr2_-_52314837_52314928	0.02232989979367658	AAUACUG	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr11_-_118977047_118977075	0.02226835869234909	AAUACUG	ENSMUST00000026665.8|Cbx4|ENSMUSG00000039989.8|chromobox 4
mm39_v1_chr11_-_86977576_86977608	0.022161027453886484	AAUACUG	ENSMUST00000020801.14|Smg8|ENSMUSG00000020495.14|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm39_v1_chr13_+_41403317_41403340	0.021833205468773268	AAUACUG	ENSMUST00000165561.4|Smim13|ENSMUSG00000091264.4|small integral membrane protein 13
mm39_v1_chr13_+_96679233_96679283	0.021301553951540143	AAUACUG	ENSMUST00000077672.12|Cert1|ENSMUSG00000021669.16|ceramide transporter 1	ENSMUST00000109444.3|Cert1|ENSMUSG00000021669.16|ceramide transporter 1
mm39_v1_chrX_+_149829131_149829146	0.021296912404527687	AAUACUG	ENSMUST00000112685.8|Fgd1|ENSMUSG00000025265.15|FYVE, RhoGEF and PH domain containing 1
mm39_v1_chr15_+_40518414_40518450	0.021215939469000186	AAUACUG	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr10_-_120815232_120815279	0.02113349855843413	AAUACUG	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr2_-_169973076_169973140	0.02099474438377123	AAUACUG	ENSMUST00000063710.13|Zfp217|ENSMUSG00000052056.15|zinc finger protein 217
mm39_v1_chr6_+_15720653_15720747	0.02033242916969162	AAUACUG	ENSMUST00000101663.10|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000190255.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000189359.7|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing	ENSMUST00000125326.8|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr4_-_58553311_58553357	0.020215334721001406	AAUACUG	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr17_-_56343625_56343647	0.020008246806637747	AAUACUG	ENSMUST00000003268.11|Sh3gl1|ENSMUSG00000003200.11|SH3-domain GRB2-like 1
mm39_v1_chr9_-_52590686_52590737	0.019483703690612846	AAUACUG	ENSMUST00000098768.3|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442	ENSMUST00000213843.2|AI593442|ENSMUSG00000078307.4|expressed sequence AI593442
mm39_v1_chr17_+_66090336_66090594	0.019299828290678448	AAUACUG	ENSMUST00000073104.11|Ppp4r1|ENSMUSG00000061950.18|protein phosphatase 4, regulatory subunit 1	ENSMUST00000160664.8|Ppp4r1|ENSMUSG00000061950.18|protein phosphatase 4, regulatory subunit 1	ENSMUST00000162272.2|Ppp4r1|ENSMUSG00000061950.18|protein phosphatase 4, regulatory subunit 1
mm39_v1_chr4_+_43875524_43875558	0.019040550633251566	AAUACUG	ENSMUST00000030198.7|Reck|ENSMUSG00000028476.14|reversion-inducing-cysteine-rich protein with kazal motifs
mm39_v1_chr5_-_34345014_34345083	0.018926223599807192	AAUACUG	ENSMUST00000042701.13|Mxd4|ENSMUSG00000037235.14|Max dimerization protein 4	ENSMUST00000119171.2|Mxd4|ENSMUSG00000037235.14|Max dimerization protein 4
mm39_v1_chr2_-_179618439_179618458	0.018874539769495543	AAUACUG	ENSMUST00000041618.13|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4	ENSMUST00000227325.2|Taf4|ENSMUSG00000039117.17|TATA-box binding protein associated factor 4
mm39_v1_chr15_+_80507671_80507693	0.01874304002902357	AAUACUG	ENSMUST00000043149.9|Grap2|ENSMUSG00000042351.10|GRB2-related adaptor protein 2
mm39_v1_chr1_+_55170390_55170409	0.018557960556992718	AAUACUG	ENSMUST00000159311.8|Mob4|ENSMUSG00000025979.14|MOB family member 4, phocein	ENSMUST00000162364.8|Mob4|ENSMUSG00000025979.14|MOB family member 4, phocein
mm39_v1_chr8_-_112603292_112603382	0.01840714920391444	AAUACUG	ENSMUST00000034431.3|Tmem170|ENSMUSG00000031953.3|transmembrane protein 170
mm39_v1_chr18_-_24663260_24663300	0.017842134818396454	AAUACUG	ENSMUST00000046206.5|Rprd1a|ENSMUSG00000040446.5|regulation of nuclear pre-mRNA domain containing 1A
mm39_v1_chr18_+_44513547_44513644	0.017753918623350944	AAUACUG	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr13_+_15638466_15638565	0.017520254940439985	AAUACUG	ENSMUST00000110510.4|Gli3|ENSMUSG00000021318.16|GLI-Kruppel family member GLI3
mm39_v1_chr9_+_35332837_35332913	0.017502805225025727	AAUACUG	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr9_+_102594867_102594929	0.017342070997558166	AAUACUG	ENSMUST00000035121.14|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2
mm39_v1_chr1_+_187730018_187730031	0.016813750471769084	AAUACUG	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr4_-_132459762_132459874	0.01665112140623444	AAUACUG	ENSMUST00000045550.5|Xkr8|ENSMUSG00000037752.5|X-linked Kx blood group related 8
mm39_v1_chr8_+_95328558_95328631	0.016456569393664872	AAUACUG	ENSMUST00000060389.10|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000212729.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000121101.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1
mm39_v1_chr18_+_22478146_22478146	0.0163615968938748	AAUACUG	ENSMUST00000120223.8|Asxl3|ENSMUSG00000045215.18|ASXL transcriptional regulator 3	ENSMUST00000097655.4|Asxl3|ENSMUSG00000045215.18|ASXL transcriptional regulator 3
mm39_v1_chr13_+_49495025_49495099	0.016294876014438964	AAUACUG	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr16_+_76810588_76810663	0.016076964423530505	AAUACUG	ENSMUST00000239066.2|Usp25|ENSMUSG00000022867.12|ubiquitin specific peptidase 25	ENSMUST00000023580.8|Usp25|ENSMUSG00000022867.12|ubiquitin specific peptidase 25
mm39_v1_chr8_+_121811091_121811125	0.015858690221672734	AAUACUG	ENSMUST00000181504.2|Foxf1|ENSMUSG00000042812.6|forkhead box F1
mm39_v1_chr7_-_109559671_109559702	0.01584630563594873	AAUACUG	ENSMUST00000080437.13|Dennd5a|ENSMUSG00000035901.15|DENN/MADD domain containing 5A
mm39_v1_chr2_+_48704121_48704187	0.015749175610124316	AAUACUG	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr2_+_65451100_65451170	0.01466683826724498	AAUACUG	ENSMUST00000144254.6|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha	ENSMUST00000028377.14|Scn2a|ENSMUSG00000075318.14|sodium channel, voltage-gated, type II, alpha
mm39_v1_chr1_-_143578542_143578631	0.014454340817807035	AAUACUG	ENSMUST00000018337.9|Cdc73|ENSMUSG00000026361.10|cell division cycle 73, Paf1/RNA polymerase II complex component
mm39_v1_chr12_-_54909568_54909706	0.014110039029797058	AAUACUG	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr12_-_75642969_75643036	0.013820056436414868	AAUACUG	ENSMUST00000021447.9|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon	ENSMUST00000220035.2|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon
mm39_v1_chr7_-_99629637_99629683	0.013701708859635463	AAUACUG	ENSMUST00000080817.6|Rnf169|ENSMUSG00000058761.6|ring finger protein 169
mm39_v1_chr2_-_66240408_66240478	0.013675809074939226	AAUACUG	ENSMUST00000112366.8|Scn1a|ENSMUSG00000064329.14|sodium channel, voltage-gated, type I, alpha
mm39_v1_chr5_-_99400698_99400786	0.013347628521649418	AAUACUG	ENSMUST00000031276.15|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B	ENSMUST00000168092.8|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B
mm39_v1_chr1_+_138891447_138891539	0.013238902253413062	AAUACUG	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chr16_-_74208180_74208314	0.01304804296965018	AAUACUG	ENSMUST00000117200.8|Robo2|ENSMUSG00000052516.20|roundabout guidance receptor 2
mm39_v1_chr11_+_83741657_83741681	0.012902793372928259	AAUACUG	ENSMUST00000021016.10|Hnf1b|ENSMUSG00000020679.12|HNF1 homeobox B
mm39_v1_chr11_+_69523754_69523832	0.012666131364369868	AAUACUG	ENSMUST00000018909.4|Fxr2|ENSMUSG00000018765.6|fragile X mental retardation, autosomal homolog 2
mm39_v1_chr1_-_54233207_54233207	0.01201102364611521	AAUACUG	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr12_+_24881582_24881657	0.011883172273241434	AAUACUG	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr2_-_167032068_167032093	0.011797023748619228	AAUACUG	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr16_-_22084700_22084755	0.011728573931546372	AAUACUG	ENSMUST00000161286.8|Tra2b|ENSMUSG00000022858.17|transformer 2 beta
mm39_v1_chr6_+_29348068_29348123	0.011652394584860995	AAUACUG	ENSMUST00000173216.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000173694.5|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000172974.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000031779.17|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000090481.14|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr9_-_65815958_65816098	0.011464682654282502	AAUACUG	ENSMUST00000119245.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000134338.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000179395.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4
mm39_v1_chr14_-_109151590_109151615	0.011271081132447078	AAUACUG	ENSMUST00000100322.4|Slitrk1|ENSMUSG00000075478.4|SLIT and NTRK-like family, member 1
mm39_v1_chr6_+_56691875_56691937	0.011257449191960301	AAUACUG	ENSMUST00000031805.11|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated	ENSMUST00000177249.3|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated
mm39_v1_chr9_-_71499628_71499654	0.01111867634785176	AAUACUG	ENSMUST00000093823.8|Myzap|ENSMUSG00000041361.14|myocardial zonula adherens protein
mm39_v1_chr7_-_115637970_115637985	0.011030104306837608	AAUACUG	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr5_-_122492223_122492300	0.01085815636398304	AAUACUG	ENSMUST00000117263.8|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B	ENSMUST00000049009.7|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B
mm39_v1_chr14_+_29690265_29690320	0.010707530849713523	AAUACUG	ENSMUST00000112268.4|Selenok|ENSMUSG00000042682.11|selenoprotein K
mm39_v1_chr1_+_194302123_194302141	0.010680007897320706	AAUACUG	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr10_-_110845860_110845927	0.010571930232373676	AAUACUG	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr14_-_80008745_80008758	0.010420167404214612	AAUACUG	ENSMUST00000039568.11|Pcdh8|ENSMUSG00000036422.11|protocadherin 8	ENSMUST00000195355.2|Pcdh8|ENSMUSG00000036422.11|protocadherin 8
mm39_v1_chr1_+_12762501_12762590	0.01031212071261563	AAUACUG	ENSMUST00000177608.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1	ENSMUST00000180062.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr9_-_16289527_16289527	0.01028129182263502	AAUACUG	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr19_-_41790458_41790499	0.00997746141386297	AAUACUG	ENSMUST00000026150.15|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000163265.9|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000177495.2|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19
mm39_v1_chr4_+_12089373_12089441	0.009573826567602873	AAUACUG	ENSMUST00000095143.9|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2	ENSMUST00000063839.6|Rbm12b2|ENSMUSG00000052137.12|RNA binding motif protein 12 B2
mm39_v1_chr8_+_55407872_55407889	0.009158047342399262	AAUACUG	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr6_+_92068361_92068371	0.008960762766831814	AAUACUG	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr1_+_7159134_7159217	0.00895182018372806	AAUACUG	ENSMUST00000061280.17|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	ENSMUST00000182114.8|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm39_v1_chr1_+_74545203_74545264	0.008950757847009435	AAUACUG	ENSMUST00000087215.7|Cnot9|ENSMUSG00000026174.10|CCR4-NOT transcription complex, subunit 9
mm39_v1_chr12_-_80483343_80483379	0.008866661234312226	AAUACUG	ENSMUST00000054145.8|Dcaf5|ENSMUSG00000049106.8|DDB1 and CUL4 associated factor 5
mm39_v1_chr2_-_65397809_65397839	0.008817813373431778	AAUACUG	ENSMUST00000066432.12|Scn3a|ENSMUSG00000057182.16|sodium channel, voltage-gated, type III, alpha
mm39_v1_chr9_+_107879700_107879879	0.008392548491458263	AAUACUG	ENSMUST00000035214.11|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000176854.7|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000175874.2|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1
mm39_v1_chr14_+_70314652_70314671	0.008341646100049909	AAUACUG	ENSMUST00000035908.3|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr3_+_58322119_58322161	0.008340301328414868	AAUACUG	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr15_-_81900335_81900372	0.008314205011776106	AAUACUG	ENSMUST00000152227.8|Desi1|ENSMUSG00000022472.17|desumoylating isopeptidase 1
mm39_v1_chr4_-_83404690_83404717	0.008258851057374126	AAUACUG	ENSMUST00000107214.9|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1	ENSMUST00000107215.9|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1	ENSMUST00000030207.15|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1
mm39_v1_chr19_+_46587523_46587617	0.00816183410823262	AAUACUG	ENSMUST00000138302.9|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like	ENSMUST00000099376.11|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like
mm39_v1_chrX_+_158038778_158038894	0.008036436036741916	AAUACUG	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr15_-_96953823_96953845	0.007939115334752752	AAUACUG	ENSMUST00000023101.10|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr19_+_10181378_10181378	0.007503294536100618	AAUACUG	ENSMUST00000040372.14|Tmem258|ENSMUSG00000036372.15|transmembrane protein 258
mm39_v1_chr5_+_37025810_37025914	0.007456324779621836	AAUACUG	ENSMUST00000031003.11|Ppp2r2c|ENSMUSG00000029120.11|protein phosphatase 2, regulatory subunit B, gamma
mm39_v1_chr2_-_5900130_5900243	0.007389927378808062	AAUACUG	ENSMUST00000026926.5|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000193792.6|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000102981.10|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)
mm39_v1_chr6_-_145811028_145811085	0.007353401232950125	AAUACUG	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr9_-_66826928_66826992	0.007167509206279081	AAUACUG	ENSMUST00000041139.9|Rab8b|ENSMUSG00000036943.10|RAB8B, member RAS oncogene family
mm39_v1_chr19_-_47452840_47452894	0.007139960160555647	AAUACUG	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr1_-_82269137_82269137	0.006755000530719083	AAUACUG	ENSMUST00000069799.3|Irs1|ENSMUSG00000055980.3|insulin receptor substrate 1
mm39_v1_chr6_-_143892814_143892837	0.006517706927658227	AAUACUG	ENSMUST00000124233.7|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000144289.4|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111748.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr1_-_134883645_134883693	0.0063932399712642845	AAUACUG	ENSMUST00000045665.13|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000086444.6|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000112163.2|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B
mm39_v1_chrX_-_74918709_74918788	0.006383705438764171	AAUACUG	ENSMUST00000114059.10|Pls3|ENSMUSG00000016382.16|plastin 3 (T-isoform)
mm39_v1_chr4_-_110144676_110144731	0.006285065521335538	AAUACUG	ENSMUST00000106598.8|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000102723.11|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000153906.2|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chr14_-_122035225_122035272	0.005980160710377091	AAUACUG	ENSMUST00000100299.11|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr14_-_45767575_45767640	0.0058086959505211306	AAUACUG	ENSMUST00000045905.15|Fermt2|ENSMUSG00000037712.18|fermitin family member 2
mm39_v1_chr2_+_151923449_151923544	0.005718101262172452	AAUACUG	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chrX_+_9751861_9751861	0.005625530558003938	AAUACUG	ENSMUST00000067529.9|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5	ENSMUST00000086165.4|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5
mm39_v1_chr2_+_69619967_69619988	0.005545731238572435	AAUACUG	ENSMUST00000151298.8|Phospho2|ENSMUSG00000027088.11|phosphatase, orphan 2	ENSMUST00000028494.9|Phospho2|ENSMUSG00000027088.11|phosphatase, orphan 2
mm39_v1_chr11_-_106503754_106503800	0.00548898421650574	AAUACUG	ENSMUST00000042780.14|Tex2|ENSMUSG00000040548.17|testis expressed gene 2
mm39_v1_chr9_+_72714156_72714156	0.005422589787905093	AAUACUG	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr1_-_3741721_3741721	0.0053935143538048165	AAUACUG	ENSMUST00000070533.5|Xkr4|ENSMUSG00000051951.6|X-linked Kx blood group related 4
mm39_v1_chr13_+_117738972_117739018	0.0053820422866444695	AAUACUG	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr9_+_47441471_47441671	0.005377818856693766	AAUACUG	ENSMUST00000114548.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000152459.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000143026.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000085909.9|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000114547.8|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000239368.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000214542.2|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1	ENSMUST00000034581.4|Cadm1|ENSMUSG00000032076.21|cell adhesion molecule 1
mm39_v1_chrX_-_104973003_104973014	0.005337674155492193	AAUACUG	ENSMUST00000130980.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler	ENSMUST00000113573.8|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr8_-_81607109_81607129	0.0053246942742143	AAUACUG	ENSMUST00000034150.10|Gab1|ENSMUSG00000031714.10|growth factor receptor bound protein 2-associated protein 1
mm39_v1_chr12_-_5425682_5425705	0.005285446303754347	AAUACUG	ENSMUST00000020958.9|Klhl29|ENSMUSG00000020627.11|kelch-like 29
mm39_v1_chr10_+_128212953_128213024	0.005125049768250778	AAUACUG	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr7_-_34353767_34353823	0.005110285466278592	AAUACUG	ENSMUST00000206501.2|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15	ENSMUST00000108069.8|Kctd15|ENSMUSG00000030499.10|potassium channel tetramerisation domain containing 15
mm39_v1_chr19_+_25649767_25649789	0.00503642057258323	AAUACUG	ENSMUST00000053068.7|Dmrt2|ENSMUSG00000048138.11|doublesex and mab-3 related transcription factor 2
mm39_v1_chr17_+_88748139_88748217	0.004754410200751692	AAUACUG	ENSMUST00000112238.9|Foxn2|ENSMUSG00000034998.19|forkhead box N2	ENSMUST00000155640.2|Foxn2|ENSMUSG00000034998.19|forkhead box N2
mm39_v1_chr9_+_79974177_79974219	0.00468952349499126	AAUACUG	ENSMUST00000037484.15|Senp6|ENSMUSG00000034252.15|SUMO/sentrin specific peptidase 6	ENSMUST00000176640.8|Senp6|ENSMUSG00000034252.15|SUMO/sentrin specific peptidase 6
mm39_v1_chr1_+_160806194_160806226	0.0046546928229716945	AAUACUG	ENSMUST00000064725.11|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	ENSMUST00000191936.2|Serpinc1|ENSMUSG00000026715.13|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm39_v1_chr2_+_3714492_3714507	0.004565378413395115	AAUACUG	ENSMUST00000027965.11|Fam107b|ENSMUSG00000026655.16|family with sequence similarity 107, member B
mm39_v1_chr6_-_59403264_59403330	0.0044767946381546395	AAUACUG	ENSMUST00000051065.6|Gprin3|ENSMUSG00000045441.6|GPRIN family member 3
mm39_v1_chr15_-_54141816_54141880	0.004393794070173657	AAUACUG	ENSMUST00000079772.4|Tnfrsf11b|ENSMUSG00000063727.4|tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
mm39_v1_chr12_-_12991828_12991915	0.004318064856756469	AAUACUG	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr4_-_91260265_91260306	0.004232659205979415	AAUACUG	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr7_-_132616977_132617058	0.0041338850687277955	AAUACUG	ENSMUST00000169570.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr15_-_48655329_48655459	0.0039932238503500184	AAUACUG	ENSMUST00000160658.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000100670.10|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000162830.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3
mm39_v1_chr1_-_132953068_132953154	0.0039013061270548295	AAUACUG	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr3_-_97134680_97134738	0.0038876387250005124	AAUACUG	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr4_+_140875222_140875282	0.00354808933972565	AAUACUG	ENSMUST00000030757.10|Fbxo42|ENSMUSG00000028920.10|F-box protein 42
mm39_v1_chr16_-_97763780_97763836	0.0032354993353969222	AAUACUG	ENSMUST00000232187.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000232165.2|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2	ENSMUST00000231263.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000052089.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000063605.15|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000113734.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000231560.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21
mm39_v1_chr7_+_61996317_61996317	0.0031628483231080067	AAUACUG	ENSMUST00000038775.6|Ndn|ENSMUSG00000033585.6|necdin, MAGE family member
mm39_v1_chr16_-_9812410_9812446	0.003117554535387436	AAUACUG	ENSMUST00000115835.8|Grin2a|ENSMUSG00000059003.13|glutamate receptor, ionotropic, NMDA2A (epsilon 1)
mm39_v1_chr17_-_80022463_80022476	0.0031057143665700502	AAUACUG	ENSMUST00000024894.2|Cyp1b1|ENSMUSG00000024087.5|cytochrome P450, family 1, subfamily b, polypeptide 1
mm39_v1_chr1_-_46893206_46893240	0.0030528314136339177	AAUACUG	ENSMUST00000027131.6|Slc39a10|ENSMUSG00000025986.7|solute carrier family 39 (zinc transporter), member 10
mm39_v1_chr11_-_89193158_89193158	0.003007839799936824	AAUACUG	ENSMUST00000061728.5|Nog|ENSMUSG00000048616.5|noggin
mm39_v1_chr9_-_75466885_75466946	0.0029200696298329835	AAUACUG	ENSMUST00000072232.9|Tmod3|ENSMUSG00000058587.10|tropomodulin 3
mm39_v1_chr15_-_84739292_84739327	0.0026738000793656647	AAUACUG	ENSMUST00000016768.12|Phf21b|ENSMUSG00000016624.16|PHD finger protein 21B
mm39_v1_chr4_-_118037240_118037251	0.002671056090050721	AAUACUG	ENSMUST00000106406.9|Kdm4a|ENSMUSG00000033326.16|lysine (K)-specific demethylase 4A
mm39_v1_chr6_+_114259596_114259777	0.0025719951172359767	AAUACUG	ENSMUST00000032454.8|Slc6a1|ENSMUSG00000030310.11|solute carrier family 6 (neurotransmitter transporter, GABA), member 1
mm39_v1_chr2_+_181405106_181405148	0.0024952194067237657	AAUACUG	ENSMUST00000081125.11|Myt1|ENSMUSG00000010505.17|myelin transcription factor 1
mm39_v1_chr7_+_63094489_63094510	0.002454042425614362	AAUACUG	ENSMUST00000058476.14|Otud7a|ENSMUSG00000033510.15|OTU domain containing 7A
mm39_v1_chr2_+_52747855_52747880	0.002306026496880179	AAUACUG	ENSMUST00000155586.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000090952.11|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000127122.9|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000049483.14|Fmnl2|ENSMUSG00000036053.18|formin-like 2	ENSMUST00000050719.13|Fmnl2|ENSMUSG00000036053.18|formin-like 2
mm39_v1_chr6_-_126143678_126143708	0.0021921764045866304	AAUACUG	ENSMUST00000112244.8|Ntf3|ENSMUSG00000049107.14|neurotrophin 3
mm39_v1_chr18_-_88912446_88912497	0.0021833024676032875	AAUACUG	ENSMUST00000070116.12|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6	ENSMUST00000125362.8|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr5_+_16139760_16139827	0.0019804653843286594	AAUACUG	ENSMUST00000101581.10|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000039370.14|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000199704.5|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000180204.8|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000078272.13|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1	ENSMUST00000115281.7|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm39_v1_chr4_-_41695442_41695442	0.0017442731528524772	AAUACUG	ENSMUST00000102961.10|Cntfr|ENSMUSG00000028444.18|ciliary neurotrophic factor receptor
mm39_v1_chr1_-_13062873_13062892	0.0017194299140796871	AAUACUG	ENSMUST00000188454.7|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr6_+_8948608_8948619	0.0016712076647434231	AAUACUG	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr15_-_73056713_73056822	0.0016450861283289894	AAUACUG	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr16_+_17051423_17051528	0.0016027979051602887	AAUACUG	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr1_+_158189831_158189874	0.0015980574531949268	AAUACUG	ENSMUST00000193042.6|Astn1|ENSMUSG00000026587.16|astrotactin 1	ENSMUST00000046110.16|Astn1|ENSMUSG00000026587.16|astrotactin 1
mm39_v1_chr12_+_102095260_102095433	0.0014153368649154642	AAUACUG	ENSMUST00000079020.12|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr1_-_136888118_136888234	0.0013846828985875537	AAUACUG	ENSMUST00000192357.6|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2	ENSMUST00000027649.14|Nr5a2|ENSMUSG00000026398.15|nuclear receptor subfamily 5, group A, member 2
mm39_v1_chrX_+_111513971_111513971	0.0013528219920075667	AAUACUG	ENSMUST00000071814.13|Zfp711|ENSMUSG00000025529.15|zinc finger protein 711
mm39_v1_chr11_+_51989508_51989640	0.001203742500834268	AAUACUG	ENSMUST00000020608.3|Ppp2ca|ENSMUSG00000020349.5|protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
mm39_v1_chr10_-_108846816_108846844	0.0011311754435268419	AAUACUG	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
mm39_v1_chr5_-_123711098_123711103	0.000959057044546938	AAUACUG	ENSMUST00000031388.13|Vps33a|ENSMUSG00000029434.13|VPS33A CORVET/HOPS core subunit
mm39_v1_chr15_+_39061612_39061758	0.0009587889559100602	AAUACUG	ENSMUST00000082054.12|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000227243.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2	ENSMUST00000042917.10|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr4_+_59805829_59805914	0.0008162608561759075	AAUACUG	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr6_-_92160952_92161019	0.0007770669467968738	AAUACUG	ENSMUST00000140438.2|Mrps25|ENSMUSG00000014551.9|mitochondrial ribosomal protein S25
mm39_v1_chr12_+_35097179_35097230	0.0007040590844284343	AAUACUG	ENSMUST00000163677.3|Snx13|ENSMUSG00000020590.17|sorting nexin 13	ENSMUST00000048519.17|Snx13|ENSMUSG00000020590.17|sorting nexin 13
mm39_v1_chr12_+_110452222_110452293	0.0004578465906152291	AAUACUG	ENSMUST00000084985.11|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma	ENSMUST00000221074.2|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma
mm39_v1_chr1_+_38037086_38037096	0.000414241791714061	AAUACUG	ENSMUST00000027252.8|Eif5b|ENSMUSG00000026083.13|eukaryotic translation initiation factor 5B
mm39_v1_chr2_-_151474391_151474519	0.000402696559769201	AAUACUG	ENSMUST00000137936.2|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000146172.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000094456.10|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000148755.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000109875.8|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000028951.14|Snph|ENSMUSG00000027457.16|syntaphilin	ENSMUST00000109877.10|Snph|ENSMUSG00000027457.16|syntaphilin
mm39_v1_chr1_+_64571942_64572013	0.0003130950506700449	AAUACUG	ENSMUST00000171164.8|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000187811.7|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000049932.12|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1	ENSMUST00000087366.11|Creb1|ENSMUSG00000025958.15|cAMP responsive element binding protein 1
mm39_v1_chr1_-_174749379_174749393	0.00016163258428582717	AAUACUG	ENSMUST00000055294.4|Grem2|ENSMUSG00000050069.4|gremlin 2, DAN family BMP antagonist
mm39_v1_chr3_+_16237371_16237447	0.00013238440300452102	AAUACUG	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr4_-_120604445_120604602	7.26481427479108e-05	AAUACUG	ENSMUST00000030376.8|Kcnq4|ENSMUSG00000028631.8|potassium voltage-gated channel, subfamily Q, member 4
mm39_v1_chr10_-_25076008_25076076	4.3807911465410284e-05	AAUACUG	ENSMUST00000100012.3|Akap7|ENSMUSG00000039166.17|A kinase (PRKA) anchor protein 7
mm39_v1_chr4_+_11156411_11156453	3.592843123433419e-05	AAUACUG	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
