mm39_v1_chr8_+_83589979_83590055	0.8722012419579976	ACAUUCA	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr12_-_45120895_45121089	0.8592003457329973	ACAUUCA	ENSMUST00000120531.8|Stxbp6|ENSMUSG00000046314.17|syntaxin binding protein 6 (amisyn)	ENSMUST00000143376.8|Stxbp6|ENSMUSG00000046314.17|syntaxin binding protein 6 (amisyn)
mm39_v1_chr7_-_98305737_98305808	0.677439592003945	ACAUUCA	ENSMUST00000205911.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000038359.6|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206611.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor	ENSMUST00000206619.2|Emsy|ENSMUSG00000035401.10|EMSY, BRCA2-interacting transcriptional repressor
mm39_v1_chr15_-_53765869_53765926	0.6495094953612791	ACAUUCA	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chrX_+_102400061_102400094	0.6209831152126224	ACAUUCA	ENSMUST00000116547.3|Chic1|ENSMUSG00000031327.11|cysteine-rich hydrophobic domain 1
mm39_v1_chr14_-_67106037_67106137	0.6033796962120113	ACAUUCA	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chrX_-_72913410_72913511	0.5805632614069764	ACAUUCA	ENSMUST00000066576.12|L1cam|ENSMUSG00000031391.19|L1 cell adhesion molecule	ENSMUST00000114430.8|L1cam|ENSMUSG00000031391.19|L1 cell adhesion molecule
mm39_v1_chr16_-_23807602_23807602	0.5787559362146917	ACAUUCA	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chr1_-_79649683_79649711	0.5208447739720956	ACAUUCA	ENSMUST00000162342.8|Ap1s3|ENSMUSG00000054702.15|adaptor-related protein complex AP-1, sigma 3
mm39_v1_chr14_+_34542053_34542108	0.5157603960400936	ACAUUCA	ENSMUST00000043349.7|Grid1|ENSMUSG00000041078.8|glutamate receptor, ionotropic, delta 1
mm39_v1_chr1_-_74163575_74163626	0.4989264108311881	ACAUUCA	ENSMUST00000169786.8|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000212888.2|Tns1|ENSMUSG00000055322.17|tensin 1	ENSMUST00000191104.7|Tns1|ENSMUSG00000055322.17|tensin 1
mm39_v1_chr6_-_38853097_38853167	0.4936688897705044	ACAUUCA	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr11_+_69656725_69656752	0.49109738358355887	ACAUUCA	ENSMUST00000108640.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4	ENSMUST00000108639.8|Zbtb4|ENSMUSG00000018750.15|zinc finger and BTB domain containing 4
mm39_v1_chr5_+_142387226_142387284	0.4851601173506956	ACAUUCA	ENSMUST00000198422.2|Foxk1|ENSMUSG00000056493.10|forkhead box K1	ENSMUST00000072837.7|Foxk1|ENSMUSG00000056493.10|forkhead box K1
mm39_v1_chr3_+_53371086_53371102	0.4742359945694179	ACAUUCA	ENSMUST00000058577.5|Proser1|ENSMUSG00000049504.13|proline and serine rich 1
mm39_v1_chr5_+_99002293_99002325	0.4728510651245368	ACAUUCA	ENSMUST00000031278.6|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3	ENSMUST00000200388.2|Bmp3|ENSMUSG00000029335.6|bone morphogenetic protein 3
mm39_v1_chr7_+_112278520_112278532	0.46523056362937953	ACAUUCA	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr6_-_116170389_116170462	0.4652127267454286	ACAUUCA	ENSMUST00000088896.10|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr8_+_109441276_109441276	0.44291514733273757	ACAUUCA	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr8_+_127025265_127025343	0.4410576106098198	ACAUUCA	ENSMUST00000108759.3|Slc35f3|ENSMUSG00000057060.9|solute carrier family 35, member F3
mm39_v1_chr2_+_179684288_179684355	0.42861964630649924	ACAUUCA	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chr19_+_8966641_8966662	0.4269396698016603	ACAUUCA	ENSMUST00000092956.4|Ahnak|ENSMUSG00000069833.14|AHNAK nucleoprotein (desmoyokin)	ENSMUST00000092955.11|Ahnak|ENSMUSG00000069833.14|AHNAK nucleoprotein (desmoyokin)
mm39_v1_chr19_+_23736205_23736274	0.4202972623468947	ACAUUCA	ENSMUST00000025830.9|Apba1|ENSMUSG00000024897.10|amyloid beta (A4) precursor protein binding, family  A, member 1
mm39_v1_chr9_-_42855775_42855806	0.4199678581357967	ACAUUCA	ENSMUST00000114865.8|Grik4|ENSMUSG00000032017.15|glutamate receptor, ionotropic, kainate 4
mm39_v1_chrX_+_55391749_55391775	0.4187682994720812	ACAUUCA	ENSMUST00000101560.4|Zfp449|ENSMUSG00000073176.5|zinc finger protein 449
mm39_v1_chr16_+_51851588_51851705	0.41874515567417053	ACAUUCA	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr1_-_162567919_162568103	0.41568157632608804	ACAUUCA	ENSMUST00000182331.2|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000183011.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182593.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182149.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C
mm39_v1_chr1_-_165830160_165830182	0.41097169975512976	ACAUUCA	ENSMUST00000111429.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000176800.2|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000177358.8|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr8_-_123425805_123425859	0.3934082096430536	ACAUUCA	ENSMUST00000127984.9|Cbfa2t3|ENSMUSG00000006362.17|CBFA2/RUNX1 translocation partner 3
mm39_v1_chr11_+_32483290_32483338	0.392703331953726	ACAUUCA	ENSMUST00000102821.4|Stk10|ENSMUSG00000020272.9|serine/threonine kinase 10
mm39_v1_chr5_-_25703700_25703841	0.38847347070593335	ACAUUCA	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr9_+_45924105_45924119	0.38532057788708	ACAUUCA	ENSMUST00000126865.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr6_-_113172340_113172349	0.38334338466061124	ACAUUCA	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr8_-_29709652_29709669	0.37260314251859317	ACAUUCA	ENSMUST00000168630.4|Unc5d|ENSMUSG00000063626.7|unc-5 netrin receptor D
mm39_v1_chr18_+_42644552_42644586	0.35876731246756577	ACAUUCA	ENSMUST00000237602.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000236088.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000025375.15|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)
mm39_v1_chr12_+_40495951_40496015	0.35421878860818146	ACAUUCA	ENSMUST00000037488.8|Dock4|ENSMUSG00000035954.11|dedicator of cytokinesis 4
mm39_v1_chr11_+_93886906_93886929	0.351182809573995	ACAUUCA	ENSMUST00000041956.14|Spag9|ENSMUSG00000020859.17|sperm associated antigen 9
mm39_v1_chr4_-_3938352_3938401	0.34874526752161555	ACAUUCA	ENSMUST00000003369.10|Plag1|ENSMUSG00000003282.10|pleiomorphic adenoma gene 1
mm39_v1_chr1_-_123973223_123973308	0.34841520678421967	ACAUUCA	ENSMUST00000112606.8|Dpp10|ENSMUSG00000036815.18|dipeptidylpeptidase 10
mm39_v1_chr10_-_7162196_7162248	0.3476267014152811	ACAUUCA	ENSMUST00000015346.12|Cnksr3|ENSMUSG00000015202.14|Cnksr family member 3
mm39_v1_chr6_-_149003171_149003184	0.34704231034312766	ACAUUCA	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr12_-_84265609_84265663	0.34059206166213535	ACAUUCA	ENSMUST00000046266.13|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein	ENSMUST00000220974.2|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein
mm39_v1_chr2_+_127089828_127089917	0.3157451297194854	ACAUUCA	ENSMUST00000035871.15|Tmem127|ENSMUSG00000034850.16|transmembrane protein 127	ENSMUST00000174503.2|Tmem127|ENSMUSG00000034850.16|transmembrane protein 127	ENSMUST00000174288.2|Tmem127|ENSMUSG00000034850.16|transmembrane protein 127
mm39_v1_chr17_+_74835290_74835369	0.3072207698265023	ACAUUCA	ENSMUST00000180037.8|Birc6|ENSMUSG00000024073.17|baculoviral IAP repeat-containing 6
mm39_v1_chr13_+_41013230_41013299	0.302547739626047	ACAUUCA	ENSMUST00000110191.10|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr14_-_71004019_71004088	0.3014044619691175	ACAUUCA	ENSMUST00000167242.8|Xpo7|ENSMUSG00000022100.15|exportin 7
mm39_v1_chr2_+_119727689_119727786	0.30118962919123304	ACAUUCA	ENSMUST00000046717.13|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000079934.12|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000110774.8|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000110773.9|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000156510.2|Mga|ENSMUSG00000033943.16|MAX gene associated
mm39_v1_chr13_-_49024583_49024642	0.30104746045213365	ACAUUCA	ENSMUST00000035540.9|Phf2|ENSMUSG00000038025.9|PHD finger protein 2
mm39_v1_chr6_+_86826470_86826577	0.30033994897572297	ACAUUCA	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr6_-_31540913_31540924	0.2992064211349296	ACAUUCA	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr19_-_7083094_7083094	0.298663466953129	ACAUUCA	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chr16_+_24212284_24212320	0.2965623915793123	ACAUUCA	ENSMUST00000038053.14|Lpp|ENSMUSG00000033306.16|LIM domain containing preferred translocation partner in lipoma
mm39_v1_chr11_+_98754434_98754472	0.29586727337970725	ACAUUCA	ENSMUST00000142414.8|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2	ENSMUST00000037480.9|Wipf2|ENSMUSG00000038013.15|WAS/WASL interacting protein family, member 2
mm39_v1_chr12_+_85043083_85043193	0.29476213622171604	ACAUUCA	ENSMUST00000168977.8|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1	ENSMUST00000021670.15|Ylpm1|ENSMUSG00000021244.16|YLP motif containing 1
mm39_v1_chr2_+_134627987_134628090	0.29072387951269624	ACAUUCA	ENSMUST00000131552.5|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1	ENSMUST00000110116.8|Plcb1|ENSMUSG00000051177.17|phospholipase C, beta 1
mm39_v1_chr2_-_25873189_25873304	0.28891108314396285	ACAUUCA	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr13_+_5911481_5911521	0.28723254711076346	ACAUUCA	ENSMUST00000000080.8|Klf6|ENSMUSG00000000078.8|Kruppel-like factor 6
mm39_v1_chr6_+_149210889_149210936	0.28641375575886374	ACAUUCA	ENSMUST00000130664.8|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1	ENSMUST00000046689.13|Resf1|ENSMUSG00000032712.17|retroelement silencing factor 1
mm39_v1_chr12_-_85143852_85143865	0.2847837406516379	ACAUUCA	ENSMUST00000177289.9|Prox2|ENSMUSG00000042320.18|prospero homeobox 2
mm39_v1_chr7_-_105282751_105282807	0.27335006687447244	ACAUUCA	ENSMUST00000057525.14|Trim3|ENSMUSG00000036989.17|tripartite motif-containing 3
mm39_v1_chr4_+_105014536_105014552	0.2697842193051627	ACAUUCA	ENSMUST00000064139.8|Plpp3|ENSMUSG00000028517.9|phospholipid phosphatase 3
mm39_v1_chr3_-_119576911_119577037	0.26819931869810054	ACAUUCA	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr3_+_97920819_97920863	0.2674616914030564	ACAUUCA	ENSMUST00000079812.8|Notch2|ENSMUSG00000027878.12|notch 2
mm39_v1_chr4_+_42949814_42949924	0.26653110571921573	ACAUUCA	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr2_+_121120070_121120087	0.26457849797041766	ACAUUCA	ENSMUST00000094639.10|Map1a|ENSMUSG00000027254.14|microtubule-associated protein 1 A
mm39_v1_chr16_-_16377982_16378114	0.26236989210522504	ACAUUCA	ENSMUST00000161861.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr2_-_63928339_63928367	0.26151221678213565	ACAUUCA	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr6_-_124865155_124865184	0.26051109376416065	ACAUUCA	ENSMUST00000024044.7|Cd4|ENSMUSG00000023274.15|CD4 antigen
mm39_v1_chr11_+_102919153_102919195	0.26027208302077204	ACAUUCA	ENSMUST00000021314.8|Nmt1|ENSMUSG00000020936.9|N-myristoyltransferase 1
mm39_v1_chrX_+_84617624_84617756	0.25488052349289686	ACAUUCA	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm39_v1_chr1_+_59802543_59802559	0.2546760815030123	ACAUUCA	ENSMUST00000087435.7|Bmpr2|ENSMUSG00000067336.7|bone morphogenetic protein receptor, type II (serine/threonine kinase)
mm39_v1_chr1_+_39940043_39940123	0.25301630381952095	ACAUUCA	ENSMUST00000168431.7|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4	ENSMUST00000163854.9|Map4k4|ENSMUSG00000026074.16|mitogen-activated protein kinase kinase kinase kinase 4
mm39_v1_chr1_-_152778373_152778421	0.25262641631606053	ACAUUCA	ENSMUST00000073441.13|Smg7|ENSMUSG00000042772.16|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	ENSMUST00000111836.4|Smg7|ENSMUSG00000042772.16|Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)
mm39_v1_chr13_+_55097200_55097293	0.24983958075566873	ACAUUCA	ENSMUST00000026994.14|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A	ENSMUST00000109994.9|Unc5a|ENSMUSG00000025876.16|unc-5 netrin receptor A
mm39_v1_chr1_-_54596754_54596856	0.2493167246126817	ACAUUCA	ENSMUST00000097739.5|Pgap1|ENSMUSG00000073678.5|post-GPI attachment to proteins 1
mm39_v1_chr15_+_102898966_102899039	0.2488289097925324	ACAUUCA	ENSMUST00000001703.8|Hoxc8|ENSMUSG00000001657.8|homeobox C8
mm39_v1_chr16_-_92622972_92623037	0.2482637875222549	ACAUUCA	ENSMUST00000023673.14|Runx1|ENSMUSG00000022952.18|runt related transcription factor 1
mm39_v1_chr2_-_73722874_73722900	0.2472967443377849	ACAUUCA	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr6_-_120015608_120015660	0.24718173686506073	ACAUUCA	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr5_+_137517140_137517140	0.2458244453488424	ACAUUCA	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr5_+_64960705_64960731	0.24505248039709226	ACAUUCA	ENSMUST00000165536.8|Klf3|ENSMUSG00000029178.15|Kruppel-like factor 3 (basic)
mm39_v1_chr5_-_145077048_145077091	0.24478282761639783	ACAUUCA	ENSMUST00000031627.9|Pdap1|ENSMUSG00000029623.15|PDGFA associated protein 1
mm39_v1_chr9_-_91247809_91247827	0.23797432638065782	ACAUUCA	ENSMUST00000034927.13|Zic1|ENSMUSG00000032368.15|zinc finger protein of the cerebellum 1
mm39_v1_chr10_+_111342147_111342278	0.23511105244597572	ACAUUCA	ENSMUST00000164773.2|Phlda1|ENSMUSG00000020205.9|pleckstrin homology like domain, family A, member 1
mm39_v1_chr5_-_135423353_135423412	0.23164672865023528	ACAUUCA	ENSMUST00000111171.6|Pom121|ENSMUSG00000053293.10|nuclear pore membrane protein 121
mm39_v1_chr13_-_54209669_54209724	0.2315726402343237	ACAUUCA	ENSMUST00000021932.6|Drd1|ENSMUSG00000021478.7|dopamine receptor D1	ENSMUST00000221470.2|Drd1|ENSMUSG00000021478.7|dopamine receptor D1
mm39_v1_chr15_+_99936516_99936552	0.22788573356939126	ACAUUCA	ENSMUST00000100203.10|Dip2b|ENSMUSG00000023026.17|disco interacting protein 2 homolog B
mm39_v1_chr3_-_31023547_31023573	0.22783861773229114	ACAUUCA	ENSMUST00000064718.12|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000177992.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000129817.9|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000168645.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000108255.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000099163.5|Phc3|ENSMUSG00000037652.16|polyhomeotic 3
mm39_v1_chr4_+_125384481_125384495	0.2275709122410763	ACAUUCA	ENSMUST00000030676.8|Grik3|ENSMUSG00000001985.10|glutamate receptor, ionotropic, kainate 3
mm39_v1_chr11_-_46057224_46057335	0.22598596494174675	ACAUUCA	ENSMUST00000020679.3|Nipal4|ENSMUSG00000020411.3|NIPA-like domain containing 4
mm39_v1_chr12_+_112978051_112978160	0.22542639618592147	ACAUUCA	ENSMUST00000223502.2|Pacs2|ENSMUSG00000021143.11|phosphofurin acidic cluster sorting protein 2	ENSMUST00000084891.5|Pacs2|ENSMUSG00000021143.11|phosphofurin acidic cluster sorting protein 2	ENSMUST00000220541.2|Pacs2|ENSMUSG00000021143.11|phosphofurin acidic cluster sorting protein 2
mm39_v1_chr9_+_22099386_22099464	0.2245289666855298	ACAUUCA	ENSMUST00000217301.2|Zfp872|ENSMUSG00000074472.11|zinc finger protein 872	ENSMUST00000178901.8|Zfp872|ENSMUSG00000074472.11|zinc finger protein 872
mm39_v1_chr9_+_46910039_46910039	0.2244572353482723	ACAUUCA	ENSMUST00000178065.3|Gm4791|ENSMUSG00000094893.3|predicted gene 4791
mm39_v1_chr12_-_31549538_31549615	0.22340984360776947	ACAUUCA	ENSMUST00000064240.14|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000185739.8|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000188326.3|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000101499.10|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1	ENSMUST00000085487.12|Cbll1|ENSMUSG00000020659.17|Casitas B-lineage lymphoma-like 1
mm39_v1_chr16_+_45044678_45044710	0.2176808927653736	ACAUUCA	ENSMUST00000102802.10|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated	ENSMUST00000063654.6|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated
mm39_v1_chr11_+_31822211_31822263	0.21728421275970378	ACAUUCA	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr9_+_21458138_21458237	0.21604463457333142	ACAUUCA	ENSMUST00000034703.15|Carm1|ENSMUSG00000032185.16|coactivator-associated arginine methyltransferase 1	ENSMUST00000115395.10|Carm1|ENSMUSG00000032185.16|coactivator-associated arginine methyltransferase 1	ENSMUST00000115394.8|Carm1|ENSMUSG00000032185.16|coactivator-associated arginine methyltransferase 1
mm39_v1_chr9_-_95632387_95632421	0.2108233944720943	ACAUUCA	ENSMUST00000189137.7|Trpc1|ENSMUSG00000032839.14|transient receptor potential cation channel, subfamily C, member 1	ENSMUST00000053785.10|Trpc1|ENSMUSG00000032839.14|transient receptor potential cation channel, subfamily C, member 1
mm39_v1_chr5_-_107437427_107437514	0.21023029986930836	ACAUUCA	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr9_-_89505178_89505178	0.20636417622251604	ACAUUCA	ENSMUST00000044491.13|Minar1|ENSMUSG00000039313.15|membrane integral NOTCH2 associated receptor 1
mm39_v1_chr3_+_122522592_122522652	0.2054213118847435	ACAUUCA	ENSMUST00000066728.10|Pde5a|ENSMUSG00000053965.11|phosphodiesterase 5A, cGMP-specific
mm39_v1_chr2_+_126549239_126549329	0.20385235243359548	ACAUUCA	ENSMUST00000028841.14|Usp8|ENSMUSG00000027363.16|ubiquitin specific peptidase 8	ENSMUST00000110416.3|Usp8|ENSMUSG00000027363.16|ubiquitin specific peptidase 8
mm39_v1_chr12_-_100995242_100995302	0.19857488702369774	ACAUUCA	ENSMUST00000085096.10|Ccdc88c|ENSMUSG00000021182.17|coiled-coil domain containing 88C
mm39_v1_chr6_-_24664959_24665039	0.1980604895630602	ACAUUCA	ENSMUST00000041737.8|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor	ENSMUST00000031695.15|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor
mm39_v1_chr15_+_80595486_80595541	0.19737532360567872	ACAUUCA	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr14_-_20027279_20027324	0.19447761571463504	ACAUUCA	ENSMUST00000160013.8|Gng2|ENSMUSG00000043004.14|guanine nucleotide binding protein (G protein), gamma 2
mm39_v1_chr3_-_32670628_32670734	0.19358008297510737	ACAUUCA	ENSMUST00000193050.2|Gnb4|ENSMUSG00000027669.15|guanine nucleotide binding protein (G protein), beta 4	ENSMUST00000108234.8|Gnb4|ENSMUSG00000027669.15|guanine nucleotide binding protein (G protein), beta 4	ENSMUST00000155737.8|Gnb4|ENSMUSG00000027669.15|guanine nucleotide binding protein (G protein), beta 4
mm39_v1_chr10_+_110581293_110581433	0.19181453496970371	ACAUUCA	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr1_-_77491683_77491779	0.1915728707415389	ACAUUCA	ENSMUST00000186930.2|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000027451.13|Epha4|ENSMUSG00000026235.15|Eph receptor A4	ENSMUST00000188797.7|Epha4|ENSMUSG00000026235.15|Eph receptor A4
mm39_v1_chr15_+_82159398_82159482	0.19010511705843447	ACAUUCA	ENSMUST00000023095.14|Septin3|ENSMUSG00000022456.19|septin 3	ENSMUST00000230365.2|Septin3|ENSMUSG00000022456.19|septin 3
mm39_v1_chr14_-_105414294_105414361	0.18830597191575948	ACAUUCA	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr2_-_45003270_45003296	0.18498467162516233	ACAUUCA	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_+_109264284_109264364	0.1847102366331657	ACAUUCA	ENSMUST00000064129.14|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A	ENSMUST00000106619.8|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A
mm39_v1_chr6_+_38410848_38410901	0.18288189349290834	ACAUUCA	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr17_-_45860580_45860603	0.18169545369836318	ACAUUCA	ENSMUST00000180252.3|Tmem151b|ENSMUSG00000096847.3|transmembrane protein 151B
mm39_v1_chr7_-_97958679_97958745	0.18042405912776988	ACAUUCA	ENSMUST00000033020.14|Acer3|ENSMUSG00000030760.15|alkaline ceramidase 3
mm39_v1_chr10_-_59787646_59787663	0.18004494200273283	ACAUUCA	ENSMUST00000020308.5|Ddit4|ENSMUSG00000020108.5|DNA-damage-inducible transcript 4
mm39_v1_chr3_-_79474989_79475000	0.17943568214062908	ACAUUCA	ENSMUST00000076136.7|Fnip2|ENSMUSG00000061175.13|folliculin interacting protein 2
mm39_v1_chr3_+_96604390_96604406	0.17933236152596946	ACAUUCA	ENSMUST00000162778.3|Pias3|ENSMUSG00000028101.19|protein inhibitor of activated STAT 3	ENSMUST00000064900.16|Pias3|ENSMUSG00000028101.19|protein inhibitor of activated STAT 3
mm39_v1_chr11_-_79037213_79037236	0.17876856372877434	ACAUUCA	ENSMUST00000018478.11|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1	ENSMUST00000108264.8|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1
mm39_v1_chr15_-_79816785_79816876	0.17640304797097683	ACAUUCA	ENSMUST00000089293.11|Cbx7|ENSMUSG00000053411.17|chromobox 7	ENSMUST00000109616.9|Cbx7|ENSMUSG00000053411.17|chromobox 7
mm39_v1_chr11_+_67477347_67477366	0.17565044756824777	ACAUUCA	ENSMUST00000108682.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr10_+_86136236_86136467	0.17530039130310351	ACAUUCA	ENSMUST00000020234.14|Timp3|ENSMUSG00000020044.14|tissue inhibitor of metalloproteinase 3
mm39_v1_chr9_-_66741998_66742008	0.1748907477338237	ACAUUCA	ENSMUST00000169282.8|Aph1c|ENSMUSG00000053040.14|aph1 homolog C, gamma secretase subunit
mm39_v1_chr5_+_103902020_103902056	0.17418441291911974	ACAUUCA	ENSMUST00000054979.10|Aff1|ENSMUSG00000029313.19|AF4/FMR2 family, member 1
mm39_v1_chr5_+_123532819_123532892	0.17294905333125501	ACAUUCA	ENSMUST00000111596.8|Mlxip|ENSMUSG00000038342.16|MLX interacting protein	ENSMUST00000068237.12|Mlxip|ENSMUSG00000038342.16|MLX interacting protein
mm39_v1_chr9_-_62888156_62888184	0.17229286002644809	ACAUUCA	ENSMUST00000098651.6|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1	ENSMUST00000214830.2|Pias1|ENSMUSG00000032405.11|protein inhibitor of activated STAT 1
mm39_v1_chr8_+_121215155_121215229	0.17203860184635003	ACAUUCA	ENSMUST00000034279.16|Gse1|ENSMUSG00000031822.21|genetic suppressor element 1, coiled-coil protein
mm39_v1_chr11_+_70453806_70453896	0.16741911071500637	ACAUUCA	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr11_-_70578744_70578774	0.16668250032398246	ACAUUCA	ENSMUST00000108545.9|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2	ENSMUST00000120261.8|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2
mm39_v1_chr10_+_20188207_20188238	0.16273323059147937	ACAUUCA	ENSMUST00000092678.10|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1	ENSMUST00000043881.12|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1
mm39_v1_chr1_+_130645056_130645070	0.1623196816154679	ACAUUCA	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr1_-_13442658_13442681	0.16222622915610893	ACAUUCA	ENSMUST00000081713.11|Ncoa2|ENSMUSG00000005886.15|nuclear receptor coactivator 2
mm39_v1_chr2_+_156681927_156681952	0.16010199852352772	ACAUUCA	ENSMUST00000081335.13|Tgif2|ENSMUSG00000062175.14|TGFB-induced factor homeobox 2
mm39_v1_chr11_+_102652228_102652275	0.15976678321568114	ACAUUCA	ENSMUST00000103081.10|Adam11|ENSMUSG00000020926.17|a disintegrin and metallopeptidase domain 11	ENSMUST00000068150.7|Adam11|ENSMUSG00000020926.17|a disintegrin and metallopeptidase domain 11
mm39_v1_chr12_-_46865709_46865720	0.1588951097151002	ACAUUCA	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr12_-_31763859_31763946	0.15883047305881318	ACAUUCA	ENSMUST00000057783.6|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000236002.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000174480.3|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22	ENSMUST00000176710.2|Gpr22|ENSMUSG00000044067.8|G protein-coupled receptor 22
mm39_v1_chr5_-_135963408_135963467	0.15696313551089489	ACAUUCA	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr5_-_36641456_36641650	0.1567945616795497	ACAUUCA	ENSMUST00000119916.2|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B	ENSMUST00000031097.8|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B
mm39_v1_chr13_+_81031512_81031543	0.15674504918626178	ACAUUCA	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr10_+_7556948_7556990	0.15502260699354972	ACAUUCA	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr14_-_103584179_103584277	0.15410580989921238	ACAUUCA	ENSMUST00000159855.8|Mycbp2|ENSMUSG00000033004.17|MYC binding protein 2, E3 ubiquitin protein ligase
mm39_v1_chr1_+_183766572_183766583	0.15404723716589142	ACAUUCA	ENSMUST00000048655.8|Dusp10|ENSMUSG00000039384.9|dual specificity phosphatase 10
mm39_v1_chr10_-_59838878_59838958	0.15320924452391388	ACAUUCA	ENSMUST00000182912.2|Anapc16|ENSMUSG00000020107.11|anaphase promoting complex subunit 16	ENSMUST00000020307.11|Anapc16|ENSMUSG00000020107.11|anaphase promoting complex subunit 16	ENSMUST00000182898.8|Anapc16|ENSMUSG00000020107.11|anaphase promoting complex subunit 16
mm39_v1_chrX_-_63320543_63320608	0.15150531268760928	ACAUUCA	ENSMUST00000114679.2|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4	ENSMUST00000069926.14|Slitrk4|ENSMUSG00000046699.15|SLIT and NTRK-like family, member 4
mm39_v1_chr2_+_76236870_76236936	0.15128074389467552	ACAUUCA	ENSMUST00000077972.11|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111929.8|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6	ENSMUST00000111930.9|Osbpl6|ENSMUSG00000042359.19|oxysterol binding protein-like 6
mm39_v1_chr9_+_121196034_121196108	0.15090368642181026	ACAUUCA	ENSMUST00000210636.2|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1	ENSMUST00000045903.8|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1
mm39_v1_chr11_+_104122216_104122279	0.14952769043849856	ACAUUCA	ENSMUST00000106992.10|Mapt|ENSMUSG00000018411.18|microtubule-associated protein tau
mm39_v1_chr14_+_63075127_63075203	0.14915288993484804	ACAUUCA	ENSMUST00000014691.10|Wdfy2|ENSMUSG00000014547.11|WD repeat and FYVE domain containing 2
mm39_v1_chr4_+_132366298_132366430	0.14819748720908174	ACAUUCA	ENSMUST00000135299.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000020197.14|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000180250.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000081726.13|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000079157.11|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3
mm39_v1_chr6_-_5496261_5496316	0.14719150871996736	ACAUUCA	ENSMUST00000203347.3|Pdk4|ENSMUSG00000019577.7|pyruvate dehydrogenase kinase, isoenzyme 4	ENSMUST00000019721.7|Pdk4|ENSMUSG00000019577.7|pyruvate dehydrogenase kinase, isoenzyme 4
mm39_v1_chr11_-_51647290_51647445	0.1457623590569088	ACAUUCA	ENSMUST00000109097.9|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr11_-_28534260_28534325	0.14558433481088578	ACAUUCA	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr13_-_115238427_115238520	0.1451180523955022	ACAUUCA	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chr9_+_65816206_65816302	0.1447102757043612	ACAUUCA	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr9_+_72182248_72182295	0.14440206461574803	ACAUUCA	ENSMUST00000183410.8|Zfp280d|ENSMUSG00000038535.18|zinc finger protein 280D
mm39_v1_chr17_-_85995680_85995703	0.14404887240442418	ACAUUCA	ENSMUST00000024947.8|Six2|ENSMUSG00000024134.12|sine oculis-related homeobox 2	ENSMUST00000163568.4|Six2|ENSMUSG00000024134.12|sine oculis-related homeobox 2
mm39_v1_chr4_-_83242490_83242505	0.1415625054529026	ACAUUCA	ENSMUST00000102823.10|Ttc39b|ENSMUSG00000038172.15|tetratricopeptide repeat domain 39B
mm39_v1_chr7_+_92390811_92390923	0.14104411454081625	ACAUUCA	ENSMUST00000032879.15|Rab30|ENSMUSG00000030643.15|RAB30, member RAS oncogene family
mm39_v1_chr15_+_10177709_10177741	0.1410096231315129	ACAUUCA	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr10_-_62628008_62628070	0.14084060716332725	ACAUUCA	ENSMUST00000217768.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000020268.7|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000218946.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1	ENSMUST00000219527.2|Ccar1|ENSMUSG00000020074.8|cell division cycle and apoptosis regulator 1
mm39_v1_chr7_-_42376441_42376441	0.1408171402896682	ACAUUCA	ENSMUST00000166837.2|Gm17067|ENSMUSG00000091594.3|predicted gene 17067
mm39_v1_chr10_-_77254041_77254111	0.14026574213123108	ACAUUCA	ENSMUST00000020496.14|Adarb1|ENSMUSG00000020262.16|adenosine deaminase, RNA-specific, B1	ENSMUST00000098374.9|Adarb1|ENSMUSG00000020262.16|adenosine deaminase, RNA-specific, B1	ENSMUST00000105406.8|Adarb1|ENSMUSG00000020262.16|adenosine deaminase, RNA-specific, B1
mm39_v1_chr10_-_80634293_80634460	0.14010659353838006	ACAUUCA	ENSMUST00000218209.2|Plekhj1|ENSMUSG00000035278.10|pleckstrin homology domain containing, family J member 1	ENSMUST00000036805.7|Plekhj1|ENSMUSG00000035278.10|pleckstrin homology domain containing, family J member 1
mm39_v1_chr11_-_78588194_78588205	0.13961965072563817	ACAUUCA	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chrX_+_41156713_41156751	0.1388472583378792	ACAUUCA	ENSMUST00000115094.8|Xiap|ENSMUSG00000025860.16|X-linked inhibitor of apoptosis
mm39_v1_chr9_+_111140741_111140826	0.137599288544646	ACAUUCA	ENSMUST00000078626.8|Trank1|ENSMUSG00000062296.9|tetratricopeptide repeat and ankyrin repeat containing 1
mm39_v1_chr16_-_62607105_62607161	0.13706837116794715	ACAUUCA	ENSMUST00000152553.2|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3	ENSMUST00000063089.12|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3
mm39_v1_chr7_+_27388765_27388765	0.1369578211056801	ACAUUCA	ENSMUST00000120004.8|Zfp607b|ENSMUSG00000057093.15|zinc finger protein 607B
mm39_v1_chr1_-_52766615_52766632	0.13683109848379701	ACAUUCA	ENSMUST00000156876.8|Mfsd6|ENSMUSG00000041439.16|major facilitator superfamily domain containing 6	ENSMUST00000087701.4|Mfsd6|ENSMUSG00000041439.16|major facilitator superfamily domain containing 6
mm39_v1_chr9_-_81515865_81515892	0.13417397264299158	ACAUUCA	ENSMUST00000183482.2|Htr1b|ENSMUSG00000049511.6|5-hydroxytryptamine (serotonin) receptor 1B
mm39_v1_chr3_+_86131970_86132025	0.13396248543201553	ACAUUCA	ENSMUST00000192145.6|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor	ENSMUST00000194759.6|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor	ENSMUST00000107635.7|Lrba|ENSMUSG00000028080.17|LPS-responsive beige-like anchor
mm39_v1_chr8_+_46924074_46924146	0.13376596499241375	ACAUUCA	ENSMUST00000034046.13|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1	ENSMUST00000211644.2|Acsl1|ENSMUSG00000018796.14|acyl-CoA synthetase long-chain family member 1
mm39_v1_chr10_-_45346297_45346386	0.13257952500333847	ACAUUCA	ENSMUST00000079390.7|Lin28b|ENSMUSG00000063804.9|lin-28 homolog B (C. elegans)
mm39_v1_chr13_+_51805727_51805738	0.13234183090631368	ACAUUCA	ENSMUST00000040117.15|Secisbp2|ENSMUSG00000035139.15|SECIS binding protein 2
mm39_v1_chr10_+_98750978_98751034	0.13228557766258517	ACAUUCA	ENSMUST00000020107.8|Atp2b1|ENSMUSG00000019943.11|ATPase, Ca++ transporting, plasma membrane 1
mm39_v1_chr13_-_111945499_111945552	0.1311747151485009	ACAUUCA	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr1_-_136273811_136273884	0.13100805138261248	ACAUUCA	ENSMUST00000048309.12|Camsap2|ENSMUSG00000041570.15|calmodulin regulated spectrin-associated protein family, member 2
mm39_v1_chr1_-_23961379_23961508	0.13003595316266647	ACAUUCA	ENSMUST00000027339.14|Smap1|ENSMUSG00000026155.14|small ArfGAP 1
mm39_v1_chr12_+_108145997_108146089	0.12979008407379253	ACAUUCA	ENSMUST00000101055.5|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr10_-_115087309_115087384	0.12890193750940016	ACAUUCA	ENSMUST00000020339.10|Tbc1d15|ENSMUSG00000020130.10|TBC1 domain family, member 15
mm39_v1_chrX_+_135723420_135723518	0.12847345954158698	ACAUUCA	ENSMUST00000033800.13|Plp1|ENSMUSG00000031425.16|proteolipid protein (myelin) 1
mm39_v1_chr12_+_84161095_84161165	0.12676401862346032	ACAUUCA	ENSMUST00000123491.8|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000046340.9|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000136159.2|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1
mm39_v1_chr13_-_67262092_67262092	0.12466353792510436	ACAUUCA	ENSMUST00000091526.4|Rslcan18|ENSMUSG00000074824.4|regulator of sex-limitation candidate 18
mm39_v1_chr18_+_53995156_53995215	0.12448881729437919	ACAUUCA	ENSMUST00000069597.8|Csnk1g3|ENSMUSG00000073563.4|casein kinase 1, gamma 3
mm39_v1_chr4_-_149569659_149569680	0.1238095254691488	ACAUUCA	ENSMUST00000119921.8|Nmnat1|ENSMUSG00000028992.14|nicotinamide nucleotide adenylyltransferase 1
mm39_v1_chr19_+_44919585_44919613	0.12367978318705306	ACAUUCA	ENSMUST00000096053.5|Slf2|ENSMUSG00000036097.9|SMC5-SMC6 complex localization factor 2
mm39_v1_chr2_-_113588983_113589000	0.12247342384287499	ACAUUCA	ENSMUST00000099575.4|Grem1|ENSMUSG00000074934.4|gremlin 1, DAN family BMP antagonist
mm39_v1_chr13_-_103470937_103471007	0.12141565824404754	ACAUUCA	ENSMUST00000167058.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4	ENSMUST00000164111.2|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr1_-_63153675_63153826	0.12070817094658075	ACAUUCA	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr8_+_91555449_91555470	0.1204611390979571	ACAUUCA	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr8_-_11058458_11058458	0.12037040890539866	ACAUUCA	ENSMUST00000040514.8|Irs2|ENSMUSG00000038894.8|insulin receptor substrate 2
mm39_v1_chr12_-_80159768_80159793	0.12034514970312836	ACAUUCA	ENSMUST00000219642.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000165114.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000218835.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000021552.3|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1
mm39_v1_chr14_-_103336990_103337007	0.11899175892740893	ACAUUCA	ENSMUST00000022720.15|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3	ENSMUST00000144141.8|Fbxl3|ENSMUSG00000022124.16|F-box and leucine-rich repeat protein 3
mm39_v1_chr17_+_26934617_26934698	0.118847813729765	ACAUUCA	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr9_+_102988940_102989065	0.11789371810111056	ACAUUCA	ENSMUST00000189134.2|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family	ENSMUST00000035155.8|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family
mm39_v1_chr9_-_44792575_44792621	0.11719006854265739	ACAUUCA	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr12_+_4284009_4284067	0.11709732609018404	ACAUUCA	ENSMUST00000179139.3|Ptrhd1|ENSMUSG00000096199.3|peptidyl-tRNA hydrolase domain containing 1
mm39_v1_chr14_-_70864666_70864748	0.11706119721260456	ACAUUCA	ENSMUST00000022694.17|Dmtn|ENSMUSG00000022099.18|dematin actin binding protein
mm39_v1_chr2_-_33321306_33321359	0.11649220933471283	ACAUUCA	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr10_-_13350106_13350185	0.11551438869241744	ACAUUCA	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr3_+_95566082_95566168	0.11263427877054191	ACAUUCA	ENSMUST00000037947.15|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1	ENSMUST00000178686.2|Mcl1|ENSMUSG00000038612.17|myeloid cell leukemia sequence 1
mm39_v1_chr12_+_83678987_83679099	0.11259696077857764	ACAUUCA	ENSMUST00000048155.16|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182618.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000183154.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182036.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182347.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25
mm39_v1_chr8_+_12807001_12807028	0.1119933763503875	ACAUUCA	ENSMUST00000033818.10|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A	ENSMUST00000091237.12|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A
mm39_v1_chr19_+_47720121_47720207	0.11140713167941493	ACAUUCA	ENSMUST00000099353.6|Sfr1|ENSMUSG00000025066.11|SWI5 dependent recombination repair 1
mm39_v1_chr19_+_16110176_16110285	0.1092739511271523	ACAUUCA	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr5_-_128510108_128510159	0.10887016570387735	ACAUUCA	ENSMUST00000044441.8|Tmem132d|ENSMUSG00000034310.9|transmembrane protein 132D
mm39_v1_chr7_+_116980173_116980249	0.10767825786663969	ACAUUCA	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr10_+_80972089_80972105	0.10742400888747505	ACAUUCA	ENSMUST00000048128.15|Zbtb7a|ENSMUSG00000035011.16|zinc finger and BTB domain containing 7a
mm39_v1_chrX_-_41000746_41000787	0.10734976682458389	ACAUUCA	ENSMUST00000047037.15|Thoc2|ENSMUSG00000037475.16|THO complex 2
mm39_v1_chr2_+_145627900_145628073	0.10714784933744377	ACAUUCA	ENSMUST00000110005.8|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2	ENSMUST00000094480.11|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2
mm39_v1_chr11_+_68582731_68582741	0.10647453595645631	ACAUUCA	ENSMUST00000102611.10|Myh10|ENSMUSG00000020900.16|myosin, heavy polypeptide 10, non-muscle
mm39_v1_chr2_-_38955452_38955513	0.10636537801342921	ACAUUCA	ENSMUST00000112850.9|Golga1|ENSMUSG00000026754.17|golgi autoantigen, golgin subfamily a, 1
mm39_v1_chr16_+_97798511_97798589	0.10586502361610454	ACAUUCA	ENSMUST00000231936.2|B230307C23Rik|ENSMUSG00000080717.11|RIKEN cDNA B230307C23 gene	ENSMUST00000122450.8|B230307C23Rik|ENSMUSG00000080717.11|RIKEN cDNA B230307C23 gene	ENSMUST00000232278.2|B230307C23Rik|ENSMUSG00000080717.11|RIKEN cDNA B230307C23 gene	ENSMUST00000232387.2|B230307C23Rik|ENSMUSG00000080717.11|RIKEN cDNA B230307C23 gene	ENSMUST00000232308.2|B230307C23Rik|ENSMUSG00000080717.11|RIKEN cDNA B230307C23 gene	ENSMUST00000231913.2|B230307C23Rik|ENSMUSG00000080717.11|RIKEN cDNA B230307C23 gene
mm39_v1_chr17_-_80787398_80787398	0.10537858128641568	ACAUUCA	ENSMUST00000068714.7|Sos1|ENSMUSG00000024241.8|SOS Ras/Rac guanine nucleotide exchange factor 1
mm39_v1_chr16_+_91526169_91526272	0.1050131210430675	ACAUUCA	ENSMUST00000114001.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113999.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000064797.12|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000114002.9|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000095909.10|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000056482.14|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113996.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)
mm39_v1_chr3_+_88439616_88439703	0.10500212432956256	ACAUUCA	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr10_+_128061699_128061715	0.10449233372866851	ACAUUCA	ENSMUST00000026455.8|Mip|ENSMUSG00000025389.8|major intrinsic protein of lens fiber
mm39_v1_chr7_-_67022520_67022609	0.1042057042210944	ACAUUCA	ENSMUST00000156690.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000107476.8|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000076325.12|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000032776.15|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A	ENSMUST00000133074.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr18_+_42408418_42408457	0.10413016770841219	ACAUUCA	ENSMUST00000091920.6|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000046972.14|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27	ENSMUST00000236240.2|Rbm27|ENSMUSG00000024491.17|RNA binding motif protein 27
mm39_v1_chr15_+_100513230_100513230	0.10222884363850064	ACAUUCA	ENSMUST00000000356.10|Dazap2|ENSMUSG00000000346.10|DAZ associated protein 2
mm39_v1_chr8_-_73302068_73302131	0.1021260677384618	ACAUUCA	ENSMUST00000058534.7|Med26|ENSMUSG00000045248.7|mediator complex subunit 26
mm39_v1_chr10_+_127928622_127928700	0.10169854425757371	ACAUUCA	ENSMUST00000219072.2|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A	ENSMUST00000045621.9|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A	ENSMUST00000170054.9|Baz2a|ENSMUSG00000040054.18|bromodomain adjacent to zinc finger domain, 2A
mm39_v1_chr2_+_154278357_154278455	0.10137618294618721	ACAUUCA	ENSMUST00000109725.8|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000099178.10|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000045270.15|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2	ENSMUST00000109724.2|Cbfa2t2|ENSMUSG00000038533.16|CBFA2/RUNX1 translocation partner 2
mm39_v1_chr14_-_30348153_30348174	0.10076379111580792	ACAUUCA	ENSMUST00000112211.9|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta	ENSMUST00000112210.11|Prkcd|ENSMUSG00000021948.18|protein kinase C, delta
mm39_v1_chr11_+_60066681_60066713	0.10070353149559448	ACAUUCA	ENSMUST00000102688.2|Rai1|ENSMUSG00000062115.16|retinoic acid induced 1
mm39_v1_chr1_-_132067404_132067430	0.10064743993852292	ACAUUCA	ENSMUST00000027697.12|Cdk18|ENSMUSG00000026437.12|cyclin-dependent kinase 18
mm39_v1_chr13_-_18118736_18118824	0.10022469993450128	ACAUUCA	ENSMUST00000009003.9|Rala|ENSMUSG00000008859.9|v-ral simian leukemia viral oncogene A (ras related)
mm39_v1_chr6_-_38230890_38231089	0.10009856516235684	ACAUUCA	ENSMUST00000117556.8|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene	ENSMUST00000169256.5|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene
mm39_v1_chr19_-_46561532_46561646	0.0994343459784126	ACAUUCA	ENSMUST00000026009.10|Arl3|ENSMUSG00000025035.10|ADP-ribosylation factor-like 3	ENSMUST00000236255.2|Arl3|ENSMUSG00000025035.10|ADP-ribosylation factor-like 3
mm39_v1_chr2_-_39080701_39080762	0.09809133445926446	ACAUUCA	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr19_+_41471067_41471128	0.09781490155396574	ACAUUCA	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr8_+_108020092_108020118	0.09763314799509844	ACAUUCA	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chr10_-_76181089_76181205	0.09639787918601384	ACAUUCA	ENSMUST00000036033.14|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A	ENSMUST00000160048.8|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A	ENSMUST00000105417.10|Dip2a|ENSMUSG00000020231.16|disco interacting protein 2 homolog A
mm39_v1_chr17_-_80597495_80597614	0.09623418382751993	ACAUUCA	ENSMUST00000086555.11|Dhx57|ENSMUSG00000035051.16|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm39_v1_chr4_-_70453140_70453224	0.09457844990185982	ACAUUCA	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr13_+_44884740_44884752	0.09450560483644835	ACAUUCA	ENSMUST00000173246.8|Jarid2|ENSMUSG00000038518.16|jumonji, AT rich interactive domain 2
mm39_v1_chr4_-_135601098_135601182	0.0929751925221881	ACAUUCA	ENSMUST00000030436.12|Pnrc2|ENSMUSG00000028675.13|proline-rich nuclear receptor coactivator 2
mm39_v1_chr15_+_12205095_12205124	0.09173826896055752	ACAUUCA	ENSMUST00000038172.16|Mtmr12|ENSMUSG00000039458.16|myotubularin related protein 12
mm39_v1_chrX_+_73348598_73348643	0.09106480527115346	ACAUUCA	ENSMUST00000015435.11|Gdi1|ENSMUSG00000015291.11|guanosine diphosphate (GDP) dissociation inhibitor 1
mm39_v1_chr16_+_38722666_38722678	0.09102389040448586	ACAUUCA	ENSMUST00000023478.8|Igsf11|ENSMUSG00000022790.15|immunoglobulin superfamily, member 11
mm39_v1_chr2_-_156977032_156977185	0.09053852705258676	ACAUUCA	ENSMUST00000139263.8|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000109549.3|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000088523.11|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1	ENSMUST00000057725.10|Samhd1|ENSMUSG00000027639.17|SAM domain and HD domain, 1
mm39_v1_chr5_+_86952072_86952135	0.09018365779997102	ACAUUCA	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr9_+_64718596_64718622	0.08943339196410895	ACAUUCA	ENSMUST00000038890.6|Dennd4a|ENSMUSG00000053641.10|DENN/MADD domain containing 4A
mm39_v1_chr1_-_186438177_186438196	0.08832947366892392	ACAUUCA	ENSMUST00000045288.14|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr1_+_42734889_42734937	0.08740204590659122	ACAUUCA	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr5_-_140634773_140634807	0.08720881415111716	ACAUUCA	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr10_+_74896383_74896461	0.0863726119510654	ACAUUCA	ENSMUST00000164107.3|Bcr|ENSMUSG00000009681.11|BCR activator of RhoGEF and GTPase
mm39_v1_chr9_-_96993169_96993214	0.0861653271148489	ACAUUCA	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr16_-_55755208_55755243	0.08596592064016671	ACAUUCA	ENSMUST00000121129.8|Cep97|ENSMUSG00000022604.19|centrosomal protein 97	ENSMUST00000023270.14|Cep97|ENSMUSG00000022604.19|centrosomal protein 97
mm39_v1_chr5_+_145168519_145168565	0.08592866969784219	ACAUUCA	ENSMUST00000200039.5|Zfp655|ENSMUSG00000007812.17|zinc finger protein 655	ENSMUST00000167316.8|Zfp655|ENSMUSG00000007812.17|zinc finger protein 655	ENSMUST00000196069.5|Zfp655|ENSMUSG00000007812.17|zinc finger protein 655	ENSMUST00000199322.5|Zfp655|ENSMUSG00000007812.17|zinc finger protein 655
mm39_v1_chr11_+_75623695_75623795	0.08451027159228422	ACAUUCA	ENSMUST00000067664.10|Ywhae|ENSMUSG00000020849.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm39_v1_chr17_-_43187280_43187368	0.0843274004835086	ACAUUCA	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr1_-_64160557_64160650	0.08383524174261811	ACAUUCA	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr6_-_39354570_39354612	0.08309058793503687	ACAUUCA	ENSMUST00000200771.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202204.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202952.2|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202400.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000200969.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202749.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000090243.8|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm39_v1_chr1_-_80736165_80736216	0.08218746354052357	ACAUUCA	ENSMUST00000077946.12|Dock10|ENSMUSG00000038608.16|dedicator of cytokinesis 10
mm39_v1_chr11_-_86435579_86435631	0.08053678251558939	ACAUUCA	ENSMUST00000138810.3|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000058286.9|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1	ENSMUST00000154617.8|Rps6kb1|ENSMUSG00000020516.16|ribosomal protein S6 kinase, polypeptide 1
mm39_v1_chr16_+_17051423_17051528	0.08053657482102808	ACAUUCA	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr10_+_95350975_95351043	0.07923508825158382	ACAUUCA	ENSMUST00000099329.5|Ube2n|ENSMUSG00000074781.6|ubiquitin-conjugating enzyme E2N
mm39_v1_chr2_+_48839505_48839629	0.07821811317434793	ACAUUCA	ENSMUST00000112745.8|Mbd5|ENSMUSG00000036792.13|methyl-CpG binding domain protein 5	ENSMUST00000112754.8|Mbd5|ENSMUSG00000036792.13|methyl-CpG binding domain protein 5
mm39_v1_chr17_+_6157154_6157182	0.07799745363818673	ACAUUCA	ENSMUST00000149756.8|Tulp4|ENSMUSG00000034377.11|tubby like protein 4
mm39_v1_chr6_+_124281607_124281659	0.07779649416590513	ACAUUCA	ENSMUST00000032234.5|Cd163|ENSMUSG00000008845.10|CD163 antigen	ENSMUST00000112541.8|Cd163|ENSMUSG00000008845.10|CD163 antigen
mm39_v1_chr13_+_42862957_42863057	0.07747016381753899	ACAUUCA	ENSMUST00000066928.12|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1	ENSMUST00000148891.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr6_-_53045546_53045640	0.07736664158057277	ACAUUCA	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr19_-_59932079_59932110	0.07699654904040475	ACAUUCA	ENSMUST00000171986.8|Rab11fip2|ENSMUSG00000040022.15|RAB11 family interacting protein 2 (class I)
mm39_v1_chr14_-_69522431_69522561	0.07609687183868802	ACAUUCA	ENSMUST00000183882.2|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37	ENSMUST00000037064.5|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37
mm39_v1_chr6_+_54793894_54793905	0.07609416318465048	ACAUUCA	ENSMUST00000079869.13|Znrf2|ENSMUSG00000058446.15|zinc and ring finger 2
mm39_v1_chr1_-_54965470_54965561	0.07509392875167169	ACAUUCA	ENSMUST00000179030.8|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44	ENSMUST00000044359.16|Ankrd44|ENSMUSG00000052331.15|ankyrin repeat domain 44
mm39_v1_chr13_-_13568106_13568209	0.07408330598084661	ACAUUCA	ENSMUST00000021738.10|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B	ENSMUST00000220628.2|Gpr137b|ENSMUSG00000021306.12|G protein-coupled receptor 137B
mm39_v1_chr3_-_80710097_80710147	0.0738557918422184	ACAUUCA	ENSMUST00000075316.10|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)	ENSMUST00000107745.8|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm39_v1_chr4_+_123798625_123798643	0.07379830822952896	ACAUUCA	ENSMUST00000030400.14|Mycbp|ENSMUSG00000028647.14|MYC binding protein
mm39_v1_chr5_+_93241287_93241310	0.07366841707761378	ACAUUCA	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr9_-_57743989_57744088	0.07363625374290227	ACAUUCA	ENSMUST00000164010.8|Arid3b|ENSMUSG00000004661.16|AT rich interactive domain 3B (BRIGHT-like)	ENSMUST00000171444.8|Arid3b|ENSMUSG00000004661.16|AT rich interactive domain 3B (BRIGHT-like)	ENSMUST00000098686.4|Arid3b|ENSMUSG00000004661.16|AT rich interactive domain 3B (BRIGHT-like)
mm39_v1_chr5_-_105007936_105007936	0.07283555237564895	ACAUUCA	ENSMUST00000186219.7|Zfp951|ENSMUSG00000072774.11|zinc finger protein 951
mm39_v1_chrX_+_150927237_150927268	0.07280992884799521	ACAUUCA	ENSMUST00000168786.8|Iqsec2|ENSMUSG00000041115.17|IQ motif and Sec7 domain 2	ENSMUST00000112605.8|Iqsec2|ENSMUSG00000041115.17|IQ motif and Sec7 domain 2	ENSMUST00000112604.8|Iqsec2|ENSMUSG00000041115.17|IQ motif and Sec7 domain 2
mm39_v1_chr17_+_73414977_73415075	0.07122069279508746	ACAUUCA	ENSMUST00000130574.4|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000149064.9|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1	ENSMUST00000067545.8|Lclat1|ENSMUSG00000054469.15|lysocardiolipin acyltransferase 1
mm39_v1_chr4_-_59549314_59549364	0.07118766700385819	ACAUUCA	ENSMUST00000148331.9|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000030076.12|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr4_+_55350043_55350083	0.07108450317921527	ACAUUCA	ENSMUST00000030134.9|Rad23b|ENSMUSG00000028426.11|RAD23 homolog B, nucleotide excision repair protein
mm39_v1_chr12_+_52746158_52746186	0.07071787765549536	ACAUUCA	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr6_-_35516700_35516823	0.07028329568175448	ACAUUCA	ENSMUST00000201026.2|Mtpn|ENSMUSG00000029840.9|myotrophin	ENSMUST00000031866.9|Mtpn|ENSMUSG00000029840.9|myotrophin
mm39_v1_chr3_-_103698853_103698879	0.06991416217874384	ACAUUCA	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr2_+_158251761_158251783	0.06901029280861352	ACAUUCA	ENSMUST00000109486.9|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)	ENSMUST00000046274.12|Ralgapb|ENSMUSG00000027652.16|Ral GTPase activating protein, beta subunit (non-catalytic)
mm39_v1_chr14_+_54669054_54669131	0.06834014926720285	ACAUUCA	ENSMUST00000089688.6|Mmp14|ENSMUSG00000000957.12|matrix metallopeptidase 14 (membrane-inserted)	ENSMUST00000225641.2|Mmp14|ENSMUSG00000000957.12|matrix metallopeptidase 14 (membrane-inserted)
mm39_v1_chr4_+_124696336_124696381	0.06795917561556257	ACAUUCA	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr9_+_108569315_108569392	0.0668784869161688	ACAUUCA	ENSMUST00000035220.12|Prkar2a|ENSMUSG00000032601.14|protein kinase, cAMP dependent regulatory, type II alpha
mm39_v1_chr12_+_3476857_3476925	0.06665709449063713	ACAUUCA	ENSMUST00000111215.10|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000092003.12|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000144247.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2	ENSMUST00000153102.9|Asxl2|ENSMUSG00000037486.19|ASXL transcriptional regulator 2
mm39_v1_chr2_+_157870606_157870651	0.06644612946514288	ACAUUCA	ENSMUST00000109518.8|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B	ENSMUST00000029180.14|Rprd1b|ENSMUSG00000027651.17|regulation of nuclear pre-mRNA domain containing 1B
mm39_v1_chr5_-_76452365_76452398	0.06625526211563813	ACAUUCA	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr17_+_86475205_86475223	0.0656106954287034	ACAUUCA	ENSMUST00000097275.9|Prkce|ENSMUSG00000045038.15|protein kinase C, epsilon
mm39_v1_chr11_+_74540284_74540346	0.0645376436642043	ACAUUCA	ENSMUST00000117818.2|Cluh|ENSMUSG00000020741.18|clustered mitochondria (cluA/CLU1) homolog	ENSMUST00000092915.12|Cluh|ENSMUSG00000020741.18|clustered mitochondria (cluA/CLU1) homolog
mm39_v1_chr7_-_44542098_44542136	0.06422671461863412	ACAUUCA	ENSMUST00000003049.8|Med25|ENSMUSG00000002968.10|mediator complex subunit 25
mm39_v1_chr3_-_97134680_97134738	0.06415922366284944	ACAUUCA	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr10_+_69932930_69933066	0.06401154195919465	ACAUUCA	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr4_+_62883796_62883854	0.06335356410704818	ACAUUCA	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr1_+_152830720_152830804	0.06271624888173974	ACAUUCA	ENSMUST00000043313.15|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2	ENSMUST00000186621.2|Nmnat2|ENSMUSG00000042751.15|nicotinamide nucleotide adenylyltransferase 2
mm39_v1_chr11_+_72580823_72580841	0.062447085573297444	ACAUUCA	ENSMUST00000155998.2|Ankfy1|ENSMUSG00000020790.15|ankyrin repeat and FYVE domain containing 1
mm39_v1_chr6_+_45036970_45037001	0.06162213075907931	ACAUUCA	ENSMUST00000114641.8|Cntnap2|ENSMUSG00000039419.18|contactin associated protein-like 2
mm39_v1_chr6_-_82916655_82916750	0.0610372384943867	ACAUUCA	ENSMUST00000000641.15|Sema4f|ENSMUSG00000000627.16|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm39_v1_chr9_+_86349207_86349225	0.06053782670711821	ACAUUCA	ENSMUST00000190957.7|Dop1a|ENSMUSG00000034973.17|DOP1 leucine zipper like protein A
mm39_v1_chr2_+_176212793_176212849	0.06022703803193254	ACAUUCA	ENSMUST00000238585.2|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967	ENSMUST00000238250.2|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967	ENSMUST00000238206.2|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967	ENSMUST00000108997.10|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967	ENSMUST00000238365.2|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967	ENSMUST00000238420.2|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967	ENSMUST00000178443.2|Zfp967|ENSMUSG00000095199.9|zinc finger protein 967
mm39_v1_chr3_-_84212069_84212116	0.059971969047529675	ACAUUCA	ENSMUST00000107692.8|Trim2|ENSMUSG00000027993.17|tripartite motif-containing 2
mm39_v1_chr6_+_125192514_125192554	0.05965476141407369	ACAUUCA	ENSMUST00000032487.14|Vamp1|ENSMUSG00000030337.17|vesicle-associated membrane protein 1	ENSMUST00000100942.9|Vamp1|ENSMUSG00000030337.17|vesicle-associated membrane protein 1	ENSMUST00000063588.11|Vamp1|ENSMUSG00000030337.17|vesicle-associated membrane protein 1
mm39_v1_chr5_-_73413888_73413979	0.057483946284540816	ACAUUCA	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr19_+_9979033_9979067	0.05740428007840547	ACAUUCA	ENSMUST00000121418.8|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1
mm39_v1_chr14_+_4230569_4230642	0.056216927746273515	ACAUUCA	ENSMUST00000090543.6|Nr1d2|ENSMUSG00000021775.12|nuclear receptor subfamily 1, group D, member 2
mm39_v1_chr18_-_64794338_64794338	0.05621428697548591	ACAUUCA	ENSMUST00000025482.10|Atp8b1|ENSMUSG00000039529.10|ATPase, class I, type 8B, member 1
mm39_v1_chr17_+_25407352_25407392	0.05399358457463412	ACAUUCA	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr7_+_89779564_89779724	0.0539526502974662	ACAUUCA	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chrX_-_73129195_73129296	0.052776655283542986	ACAUUCA	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr9_+_113760002_113760055	0.05258686789672615	ACAUUCA	ENSMUST00000084885.12|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1	ENSMUST00000009885.14|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1
mm39_v1_chr11_-_79421397_79421435	0.05218574070079953	ACAUUCA	ENSMUST00000103236.4|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a	ENSMUST00000170422.4|Evi2|ENSMUSG00000070354.14|ecotropic viral integration site 2	ENSMUST00000170799.8|Evi2a|ENSMUSG00000078771.11|ecotropic viral integration site 2a
mm39_v1_chr14_+_69266566_69266687	0.051007185608355585	ACAUUCA	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr5_+_16758777_16758795	0.0508129268753279	ACAUUCA	ENSMUST00000030683.8|Hgf|ENSMUSG00000028864.8|hepatocyte growth factor
mm39_v1_chr17_+_78507669_78507687	0.05021833678137351	ACAUUCA	ENSMUST00000112498.3|Crim1|ENSMUSG00000024074.9|cysteine rich transmembrane BMP regulator 1 (chordin like)
mm39_v1_chr1_+_9618173_9618326	0.04902765178111064	ACAUUCA	ENSMUST00000144177.8|Adhfe1|ENSMUSG00000025911.15|alcohol dehydrogenase, iron containing, 1
mm39_v1_chr1_+_191638854_191638879	0.048225572696736406	ACAUUCA	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chr14_-_30075424_30075492	0.048163781351844	ACAUUCA	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr10_+_60113449_60113546	0.047984050996712414	ACAUUCA	ENSMUST00000105465.8|Psap|ENSMUSG00000004207.15|prosaposin	ENSMUST00000179238.8|Psap|ENSMUSG00000004207.15|prosaposin	ENSMUST00000177779.8|Psap|ENSMUSG00000004207.15|prosaposin	ENSMUST00000004316.15|Psap|ENSMUSG00000004207.15|prosaposin
mm39_v1_chr2_-_176619602_176619602	0.04785583903474576	ACAUUCA	ENSMUST00000099007.3|Gm14296|ENSMUSG00000074527.12|predicted gene 14296
mm39_v1_chr2_-_150531280_150531280	0.04765315081876631	ACAUUCA	ENSMUST00000046095.10|Vsx1|ENSMUSG00000033080.10|visual system homeobox 1
mm39_v1_chr7_-_42342142_42342202	0.047183399082387514	ACAUUCA	ENSMUST00000107992.2|Zfp975|ENSMUSG00000069727.6|zinc finger protein 975
mm39_v1_chr1_-_134883645_134883693	0.04700532562614958	ACAUUCA	ENSMUST00000045665.13|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000086444.6|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B	ENSMUST00000112163.2|Ppp1r12b|ENSMUSG00000073557.13|protein phosphatase 1, regulatory subunit 12B
mm39_v1_chr2_-_25471703_25471770	0.045080011230857725	ACAUUCA	ENSMUST00000114217.3|Ajm1|ENSMUSG00000029419.9|apical junction component 1	ENSMUST00000191602.2|Ajm1|ENSMUSG00000029419.9|apical junction component 1
mm39_v1_chr7_+_98143429_98143429	0.04486835214251422	ACAUUCA	ENSMUST00000165205.2|Lrrc32|ENSMUSG00000090958.3|leucine rich repeat containing 32
mm39_v1_chr19_+_55730696_55730774	0.0444531018451665	ACAUUCA	ENSMUST00000153888.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000127233.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000061496.17|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111656.8|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111657.11|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box
mm39_v1_chr17_-_84495364_84495381	0.04436765289897966	ACAUUCA	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr5_+_130200639_130200720	0.04429245240485555	ACAUUCA	ENSMUST00000119797.8|Rabgef1|ENSMUSG00000025340.15|RAB guanine nucleotide exchange factor (GEF) 1	ENSMUST00000148264.8|Rabgef1|ENSMUSG00000025340.15|RAB guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr11_+_77576981_77577005	0.044261661720819134	ACAUUCA	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr15_-_8473918_8473991	0.04346287766411876	ACAUUCA	ENSMUST00000052965.8|Nipbl|ENSMUSG00000022141.8|NIPBL cohesin loading factor
mm39_v1_chr11_-_94283792_94283809	0.0430330963253892	ACAUUCA	ENSMUST00000178136.8|Abcc3|ENSMUSG00000020865.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 3	ENSMUST00000021231.8|Abcc3|ENSMUSG00000020865.17|ATP-binding cassette, sub-family C (CFTR/MRP), member 3
mm39_v1_chr10_-_7831979_7832035	0.042302208164998086	ACAUUCA	ENSMUST00000146444.8|Tab2|ENSMUSG00000015755.17|TGF-beta activated kinase 1/MAP3K7 binding protein 2
mm39_v1_chr9_-_114393406_114393437	0.04152558090991229	ACAUUCA	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr11_+_44409775_44409827	0.041371935173301864	ACAUUCA	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr14_-_65187287_65187335	0.041079886762376866	ACAUUCA	ENSMUST00000067843.10|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176489.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175905.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000022544.14|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175744.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176128.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1
mm39_v1_chr11_-_90578397_90578433	0.04043470254913779	ACAUUCA	ENSMUST00000107869.9|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)	ENSMUST00000154599.2|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)	ENSMUST00000107868.8|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)	ENSMUST00000020849.9|Tom1l1|ENSMUSG00000020541.13|target of myb1-like 1 (chicken)
mm39_v1_chr2_-_25982160_25982189	0.04033580707793816	ACAUUCA	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr3_+_157653051_157653148	0.039262026804418065	ACAUUCA	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr2_-_119308094_119308186	0.038975048447963165	ACAUUCA	ENSMUST00000110808.2|Ino80|ENSMUSG00000034154.16|INO80 complex subunit	ENSMUST00000049920.14|Ino80|ENSMUSG00000034154.16|INO80 complex subunit
mm39_v1_chr17_+_50816296_50816431	0.03881921224630771	ACAUUCA	ENSMUST00000043938.8|Plcl2|ENSMUSG00000038910.8|phospholipase C-like 2
mm39_v1_chr7_+_110226857_110226873	0.03867594159431829	ACAUUCA	ENSMUST00000033054.10|Adm|ENSMUSG00000030790.16|adrenomedullin
mm39_v1_chr11_-_23845207_23845280	0.038573270146529955	ACAUUCA	ENSMUST00000102863.3|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma	ENSMUST00000020513.10|Papolg|ENSMUSG00000020273.14|poly(A) polymerase gamma
mm39_v1_chr3_+_152101618_152101697	0.037928230676261464	ACAUUCA	ENSMUST00000106100.9|Zzz3|ENSMUSG00000039068.17|zinc finger, ZZ domain containing 3
mm39_v1_chr2_+_163444214_163444242	0.037731997101292804	ACAUUCA	ENSMUST00000171696.8|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like	ENSMUST00000109408.10|Ttpal|ENSMUSG00000017679.17|tocopherol (alpha) transfer protein-like
mm39_v1_chr11_-_107022748_107022781	0.03760882257318808	ACAUUCA	ENSMUST00000057892.15|Bptf|ENSMUSG00000040481.18|bromodomain PHD finger transcription factor
mm39_v1_chr10_+_128212953_128213024	0.03740051523447011	ACAUUCA	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr5_-_143717970_143718072	0.03734173695942163	ACAUUCA	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr2_+_175968362_175968366	0.037050934086192686	ACAUUCA	ENSMUST00000099009.9|2210418O10Rik|ENSMUSG00000078894.10|RIKEN cDNA 2210418O10 gene	ENSMUST00000136719.2|2210418O10Rik|ENSMUSG00000078894.10|RIKEN cDNA 2210418O10 gene
mm39_v1_chr15_-_73056713_73056822	0.03685429143502162	ACAUUCA	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr2_+_32340459_32340474	0.03674619656341113	ACAUUCA	ENSMUST00000048431.3|Naif1|ENSMUSG00000039164.3|nuclear apoptosis inducing factor 1
mm39_v1_chr14_+_20724366_20724376	0.036163033230731716	ACAUUCA	ENSMUST00000048657.10|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr12_+_56742413_56742459	0.035709811630797325	ACAUUCA	ENSMUST00000001538.10|Pax9|ENSMUSG00000001497.19|paired box 9
mm39_v1_chr4_+_129941633_129941694	0.03547973234473503	ACAUUCA	ENSMUST00000044565.15|Col16a1|ENSMUSG00000040690.16|collagen, type XVI, alpha 1	ENSMUST00000132251.2|Col16a1|ENSMUSG00000040690.16|collagen, type XVI, alpha 1
mm39_v1_chr2_+_127967951_127967976	0.03529719205207962	ACAUUCA	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr3_+_135144202_135144241	0.03509880473729818	ACAUUCA	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr8_+_88925821_88925852	0.033928752685333345	ACAUUCA	ENSMUST00000066748.10|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000119033.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000118952.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B
mm39_v1_chr12_-_102671154_102671240	0.033910328170771636	ACAUUCA	ENSMUST00000178697.2|Itpk1|ENSMUSG00000057963.10|inositol 1,3,4-triphosphate 5/6 kinase	ENSMUST00000046518.12|Itpk1|ENSMUSG00000057963.10|inositol 1,3,4-triphosphate 5/6 kinase
mm39_v1_chr13_+_81859460_81859649	0.03325077772051839	ACAUUCA	ENSMUST00000057598.7|Mblac2|ENSMUSG00000051098.7|metallo-beta-lactamase domain containing 2	ENSMUST00000224299.2|Mblac2|ENSMUSG00000051098.7|metallo-beta-lactamase domain containing 2
mm39_v1_chr18_-_44795317_44795333	0.03295554653430043	ACAUUCA	ENSMUST00000164666.6|Mcc|ENSMUSG00000071856.11|mutated in colorectal cancers
mm39_v1_chr3_+_60408600_60408663	0.032701351618992715	ACAUUCA	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr14_-_96756503_96756538	0.03254280059762893	ACAUUCA	ENSMUST00000022666.9|Klhl1|ENSMUSG00000022076.11|kelch-like 1
mm39_v1_chr2_-_33358513_33358582	0.030768121592814387	ACAUUCA	ENSMUST00000113156.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000028125.12|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43	ENSMUST00000126442.2|Zbtb43|ENSMUSG00000026788.14|zinc finger and BTB domain containing 43
mm39_v1_chr15_+_85619958_85620010	0.03076765578799835	ACAUUCA	ENSMUST00000109422.8|Ppara|ENSMUSG00000022383.14|peroxisome proliferator activated receptor alpha
mm39_v1_chr2_-_63014622_63014681	0.030629239303163407	ACAUUCA	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chrX_+_57075981_57076003	0.03059649413516449	ACAUUCA	ENSMUST00000088627.11|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3
mm39_v1_chr14_-_57015748_57015824	0.029977473608891234	ACAUUCA	ENSMUST00000022507.13|Pspc1|ENSMUSG00000021938.13|paraspeckle protein 1	ENSMUST00000163924.2|Pspc1|ENSMUSG00000021938.13|paraspeckle protein 1
mm39_v1_chr7_-_105049197_105049261	0.029775089289030485	ACAUUCA	ENSMUST00000048079.14|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000118726.8|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000074686.10|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000122327.7|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2	ENSMUST00000179474.9|Fam160a2|ENSMUSG00000044465.20|family with sequence similarity 160, member A2
mm39_v1_chr9_-_54408780_54408928	0.02932636641909711	ACAUUCA	ENSMUST00000118600.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2	ENSMUST00000118163.8|Dmxl2|ENSMUSG00000041268.18|Dmx-like 2
mm39_v1_chr9_+_72714156_72714156	0.02912933028776874	ACAUUCA	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr6_+_141194886_141194995	0.029037447243791696	ACAUUCA	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr3_+_19242274_19242288	0.02863312764616468	ACAUUCA	ENSMUST00000130645.8|Mtfr1|ENSMUSG00000027601.14|mitochondrial fission regulator 1
mm39_v1_chr2_+_3119442_3119513	0.02840268740667148	ACAUUCA	ENSMUST00000091505.11|Fam171a1|ENSMUSG00000050530.15|family with sequence similarity 171, member A1
mm39_v1_chr7_-_42516641_42516677	0.02832320927954025	ACAUUCA	ENSMUST00000174558.2|Gm2381|ENSMUSG00000092225.2|predicted gene 2381
mm39_v1_chr2_+_176494026_176494026	0.027713820742327238	ACAUUCA	ENSMUST00000132883.8|Gm14295|ENSMUSG00000078877.12|predicted gene 14295
mm39_v1_chrX_-_156826262_156826290	0.02734614618835782	ACAUUCA	ENSMUST00000026750.15|Cnksr2|ENSMUSG00000025658.17|connector enhancer of kinase suppressor of Ras 2	ENSMUST00000112513.2|Cnksr2|ENSMUSG00000025658.17|connector enhancer of kinase suppressor of Ras 2
mm39_v1_chr6_+_92068361_92068371	0.026383218386324698	ACAUUCA	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr6_-_30304512_30304569	0.02591161727960451	ACAUUCA	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr2_-_24653059_24653164	0.025626503652875908	ACAUUCA	ENSMUST00000100348.10|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000041342.12|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000114447.8|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000102939.9|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit	ENSMUST00000070864.14|Cacna1b|ENSMUSG00000004113.19|calcium channel, voltage-dependent, N type, alpha 1B subunit
mm39_v1_chr9_-_80347482_80347534	0.025222725980045685	ACAUUCA	ENSMUST00000085289.12|Impg1|ENSMUSG00000032343.16|interphotoreceptor matrix proteoglycan 1	ENSMUST00000185068.2|Impg1|ENSMUSG00000032343.16|interphotoreceptor matrix proteoglycan 1	ENSMUST00000113250.10|Impg1|ENSMUSG00000032343.16|interphotoreceptor matrix proteoglycan 1
mm39_v1_chr1_-_184731672_184731767	0.024537449924095112	ACAUUCA	ENSMUST00000192657.2|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1	ENSMUST00000027929.10|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1
mm39_v1_chr5_-_134776101_134776177	0.024512076662252656	ACAUUCA	ENSMUST00000015138.13|Eln|ENSMUSG00000029675.13|elastin
mm39_v1_chr18_+_64387428_64387457	0.024334583195664426	ACAUUCA	ENSMUST00000025477.15|St8sia3|ENSMUSG00000056812.15|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
mm39_v1_chr7_+_138968988_138969077	0.024025087349870303	ACAUUCA	ENSMUST00000106098.8|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A	ENSMUST00000026550.14|Inpp5a|ENSMUSG00000025477.15|inositol polyphosphate-5-phosphatase A
mm39_v1_chr1_-_119765343_119765403	0.02393401680879063	ACAUUCA	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr12_+_4642987_4643091	0.02370364445206671	ACAUUCA	ENSMUST00000062580.8|Itsn2|ENSMUSG00000020640.11|intersectin 2	ENSMUST00000220311.2|Itsn2|ENSMUSG00000020640.11|intersectin 2
mm39_v1_chr17_-_46798566_46798608	0.02334917579421653	ACAUUCA	ENSMUST00000047034.9|Ttbk1|ENSMUSG00000015599.10|tau tubulin kinase 1
mm39_v1_chr13_-_89890609_89890634	0.023213644024642096	ACAUUCA	ENSMUST00000109546.9|Vcan|ENSMUSG00000021614.17|versican
mm39_v1_chr5_+_139186386_139186440	0.02319062621396021	ACAUUCA	ENSMUST00000058716.14|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000110883.9|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000110884.9|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000100517.10|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000127045.8|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000143562.8|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000078690.13|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1	ENSMUST00000146715.8|Sun1|ENSMUSG00000036817.15|Sad1 and UNC84 domain containing 1
mm39_v1_chr7_+_39167154_39167230	0.02305716179716916	ACAUUCA	ENSMUST00000108015.4|Zfp619|ENSMUSG00000068959.7|zinc finger protein 619
mm39_v1_chr4_+_109137462_109137513	0.02238639683052998	ACAUUCA	ENSMUST00000102729.10|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr10_+_89580849_89580884	0.022333108763454155	ACAUUCA	ENSMUST00000020112.7|Uhrf1bp1l|ENSMUSG00000019951.11|UHRF1 (ICBP90) binding protein 1-like
mm39_v1_chr6_-_101354858_101354977	0.02212322304444228	ACAUUCA	ENSMUST00000075994.11|Pdzrn3|ENSMUSG00000035357.18|PDZ domain containing RING finger 3
mm39_v1_chrX_-_52358663_52358735	0.0219886345845777	ACAUUCA	ENSMUST00000114841.2|Fam122b|ENSMUSG00000036022.16|family with sequence similarity 122, member B	ENSMUST00000071023.12|Fam122b|ENSMUSG00000036022.16|family with sequence similarity 122, member B
mm39_v1_chr11_-_86964881_86964943	0.02187486036301511	ACAUUCA	ENSMUST00000020804.8|Gdpd1|ENSMUSG00000061666.7|glycerophosphodiester phosphodiesterase domain containing 1
mm39_v1_chr2_+_150059993_150059993	0.021187290034870746	ACAUUCA	ENSMUST00000073782.4|Zfp937|ENSMUSG00000060336.7|zinc finger protein 937
mm39_v1_chr5_+_54155814_54155841	0.02106708940545097	ACAUUCA	ENSMUST00000117661.9|Stim2|ENSMUSG00000039156.20|stromal interaction molecule 2
mm39_v1_chr3_-_127631068_127631172	0.020984211191851773	ACAUUCA	ENSMUST00000051737.8|Ap1ar|ENSMUSG00000074238.7|adaptor-related protein complex 1 associated regulatory protein	ENSMUST00000200409.5|Ap1ar|ENSMUSG00000074238.7|adaptor-related protein complex 1 associated regulatory protein
mm39_v1_chr5_-_92190859_92190911	0.020846564102145852	ACAUUCA	ENSMUST00000069937.11|Cdkl2|ENSMUSG00000029403.15|cyclin-dependent kinase-like 2 (CDC2-related kinase)	ENSMUST00000086978.12|Cdkl2|ENSMUSG00000029403.15|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm39_v1_chr6_+_87019819_87019900	0.0201550902702931	ACAUUCA	ENSMUST00000113657.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000113658.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000113655.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1	ENSMUST00000032057.8|Gfpt1|ENSMUSG00000029992.15|glutamine fructose-6-phosphate transaminase 1
mm39_v1_chr14_-_78326435_78326471	0.020048617355865658	ACAUUCA	ENSMUST00000118785.3|Fam216b|ENSMUSG00000045655.10|family with sequence similarity 216, member B	ENSMUST00000066437.5|Fam216b|ENSMUSG00000045655.10|family with sequence similarity 216, member B
mm39_v1_chr17_+_34824827_34824862	0.0188716106405477	ACAUUCA	ENSMUST00000037489.15|Agpat1|ENSMUSG00000034254.18|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm39_v1_chr7_-_119494918_119494975	0.01867630275100717	ACAUUCA	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr13_+_74269554_74269634	0.01806840733912273	ACAUUCA	ENSMUST00000036208.7|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3	ENSMUST00000225423.2|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3	ENSMUST00000221703.2|Slc9a3|ENSMUSG00000036123.9|solute carrier family 9 (sodium/hydrogen exchanger), member 3
mm39_v1_chr5_-_68004743_68004781	0.017450918234781062	ACAUUCA	ENSMUST00000072971.13|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	ENSMUST00000113652.8|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	ENSMUST00000113651.8|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	ENSMUST00000037380.15|Atp8a1|ENSMUSG00000037685.16|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1
mm39_v1_chr9_-_66702750_66702804	0.01677015201147953	ACAUUCA	ENSMUST00000034934.15|Aph1b|ENSMUSG00000032375.16|aph1 homolog B, gamma secretase subunit
mm39_v1_chr9_+_54606832_54606849	0.016712948132511122	ACAUUCA	ENSMUST00000070070.8|Dnaja4|ENSMUSG00000032285.16|DnaJ heat shock protein family (Hsp40) member A4
mm39_v1_chr8_-_36716445_36716670	0.01635401536430557	ACAUUCA	ENSMUST00000239119.2|Lonrf1|ENSMUSG00000039633.8|LON peptidase N-terminal domain and ring finger 1	ENSMUST00000065297.6|Lonrf1|ENSMUSG00000039633.8|LON peptidase N-terminal domain and ring finger 1
mm39_v1_chr4_+_130390588_130390632	0.01610712206669634	ACAUUCA	ENSMUST00000030315.13|Pum1|ENSMUSG00000028580.16|pumilio RNA-binding family member 1
mm39_v1_chr6_+_54658609_54658770	0.015939657255364496	ACAUUCA	ENSMUST00000190641.7|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)	ENSMUST00000187701.2|Mturn|ENSMUSG00000038065.14|maturin, neural progenitor differentiation regulator homolog (Xenopus)
mm39_v1_chr3_+_16237371_16237447	0.015782614150778123	ACAUUCA	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr2_-_52314837_52314928	0.015777446207898203	ACAUUCA	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr16_+_49675969_49676120	0.015592525864355092	ACAUUCA	ENSMUST00000229101.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230836.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000229206.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000084838.14|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230281.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm39_v1_chr7_-_29772226_29772349	0.015479925356649733	ACAUUCA	ENSMUST00000183115.8|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000182919.8|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000183190.2|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000080834.15|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82
mm39_v1_chr11_-_51891259_51891311	0.015345428884797483	ACAUUCA	ENSMUST00000020657.13|Ube2b|ENSMUSG00000020390.13|ubiquitin-conjugating enzyme E2B
mm39_v1_chr13_-_25015392_25015500	0.015145171268305037	ACAUUCA	ENSMUST00000006900.7|Acot13|ENSMUSG00000006717.8|acyl-CoA thioesterase 13
mm39_v1_chr5_-_137101108_137101131	0.013834272788070536	ACAUUCA	ENSMUST00000077523.4|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1	ENSMUST00000041388.11|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm39_v1_chr16_-_97763780_97763836	0.013744856116080425	ACAUUCA	ENSMUST00000232187.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000232165.2|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2	ENSMUST00000231263.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000052089.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000063605.15|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000113734.9|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21	ENSMUST00000231560.2|Zbtb21|ENSMUSG00000046962.17|zinc finger and BTB domain containing 21
mm39_v1_chr19_-_59334172_59334277	0.013586906838278194	ACAUUCA	ENSMUST00000099274.4|Pdzd8|ENSMUSG00000074746.4|PDZ domain containing 8
mm39_v1_chr3_-_27764571_27764616	0.01338671031528266	ACAUUCA	ENSMUST00000046157.10|Fndc3b|ENSMUSG00000039286.13|fibronectin type III domain containing 3B
mm39_v1_chr11_-_88609048_88609136	0.01298899900970777	ACAUUCA	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr15_-_100952206_100952280	0.012019858605700373	ACAUUCA	ENSMUST00000178140.2|Fignl2|ENSMUSG00000095440.3|fidgetin-like 2
mm39_v1_chr16_+_56298228_56298263	0.011911127600712352	ACAUUCA	ENSMUST00000231832.2|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000096013.11|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000048471.15|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000231870.2|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000171000.3|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000231781.2|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein	ENSMUST00000096012.11|Abi3bp|ENSMUSG00000035258.16|ABI family member 3 binding protein
mm39_v1_chr18_+_43340616_43340648	0.011453815311607256	ACAUUCA	ENSMUST00000045477.6|Stk32a|ENSMUSG00000039954.10|serine/threonine kinase 32A
mm39_v1_chr11_-_118931731_118931795	0.011379236039040038	ACAUUCA	ENSMUST00000026663.8|Cbx8|ENSMUSG00000025578.10|chromobox 8
mm39_v1_chr6_+_17463748_17463808	0.011032997430472757	ACAUUCA	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr11_+_105480796_105480857	0.010660563438910572	ACAUUCA	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr1_-_23422230_23422300	0.010403749657790503	ACAUUCA	ENSMUST00000027343.6|Ogfrl1|ENSMUSG00000026158.12|opioid growth factor receptor-like 1
mm39_v1_chr16_-_85599994_85600009	0.010330812269185868	ACAUUCA	ENSMUST00000023610.15|Adamts1|ENSMUSG00000022893.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm39_v1_chr6_-_28261881_28261942	0.01028818948200735	ACAUUCA	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr11_+_117700479_117700538	0.010117855453550102	ACAUUCA	ENSMUST00000026649.14|Syngr2|ENSMUSG00000048277.16|synaptogyrin 2	ENSMUST00000132298.2|Gm20708|ENSMUSG00000093485.2|predicted gene 20708	ENSMUST00000177131.8|Syngr2|ENSMUSG00000048277.16|synaptogyrin 2	ENSMUST00000120928.2|Syngr2|ENSMUSG00000048277.16|synaptogyrin 2	ENSMUST00000175737.2|Syngr2|ENSMUSG00000048277.16|synaptogyrin 2
mm39_v1_chr9_-_69668204_69668222	0.00964092810414996	ACAUUCA	ENSMUST00000071281.5|Foxb1|ENSMUSG00000059246.5|forkhead box B1
mm39_v1_chr1_-_22031718_22031805	0.00937319019460217	ACAUUCA	ENSMUST00000029667.13|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5	ENSMUST00000173058.8|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5	ENSMUST00000173404.2|Kcnq5|ENSMUSG00000028033.17|potassium voltage-gated channel, subfamily Q, member 5
mm39_v1_chr2_+_176362315_176362355	0.009350036962690681	ACAUUCA	ENSMUST00000121956.8|Zfp973|ENSMUSG00000078879.11|zinc finger protein 973	ENSMUST00000108985.9|Zfp973|ENSMUSG00000078879.11|zinc finger protein 973
mm39_v1_chr9_+_111100893_111101013	0.008972437184326533	ACAUUCA	ENSMUST00000135807.2|Epm2aip1|ENSMUSG00000046785.9|EPM2A (laforin) interacting protein 1	ENSMUST00000060711.8|Epm2aip1|ENSMUSG00000046785.9|EPM2A (laforin) interacting protein 1
mm39_v1_chr8_+_110505184_110505193	0.008938056800422546	ACAUUCA	ENSMUST00000093157.13|Ap1g1|ENSMUSG00000031731.17|adaptor protein complex AP-1, gamma 1 subunit
mm39_v1_chr2_-_104647041_104647138	0.00848203311073774	ACAUUCA	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr13_+_113346193_113346311	0.008215854308237226	ACAUUCA	ENSMUST00000038144.9|Esm1|ENSMUSG00000042379.9|endothelial cell-specific molecule 1
mm39_v1_chr1_+_139349912_139350120	0.007912074806502774	ACAUUCA	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr9_-_65815958_65816098	0.007726749152996356	ACAUUCA	ENSMUST00000119245.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000134338.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4	ENSMUST00000179395.8|Trip4|ENSMUSG00000032386.16|thyroid hormone receptor interactor 4
mm39_v1_chr2_-_59955995_59956119	0.0076982159670157466	ACAUUCA	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr3_-_145355725_145355743	0.007158193774206231	ACAUUCA	ENSMUST00000029846.5|Ccn1|ENSMUSG00000028195.5|cellular communication network factor 1
mm39_v1_chr2_+_153133326_153133378	0.007070684248086731	ACAUUCA	ENSMUST00000028977.7|Kif3b|ENSMUSG00000027475.10|kinesin family member 3B
mm39_v1_chr12_+_24881582_24881657	0.006938476176526802	ACAUUCA	ENSMUST00000221952.2|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000078902.8|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2	ENSMUST00000110942.11|Mboat2|ENSMUSG00000020646.18|membrane bound O-acyltransferase domain containing 2
mm39_v1_chr5_+_63806451_63806451	0.006454955687518078	ACAUUCA	ENSMUST00000159584.3|Nwd2|ENSMUSG00000090061.10|NACHT and WD repeat domain containing 2
mm39_v1_chr19_+_44977512_44977555	0.006364491447180136	ACAUUCA	ENSMUST00000026225.15|Sema4g|ENSMUSG00000025207.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm39_v1_chr5_-_29683468_29683595	0.006249487939051614	ACAUUCA	ENSMUST00000165512.4|Mnx1|ENSMUSG00000001566.10|motor neuron and pancreas homeobox 1	ENSMUST00000001608.8|Mnx1|ENSMUSG00000001566.10|motor neuron and pancreas homeobox 1
mm39_v1_chr5_+_34153328_34153375	0.0061973291711492845	ACAUUCA	ENSMUST00000056355.9|Nat8l|ENSMUSG00000048142.10|N-acetyltransferase 8-like
mm39_v1_chr5_+_88868714_88868734	0.005926097889150499	ACAUUCA	ENSMUST00000113229.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B	ENSMUST00000006424.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B
mm39_v1_chr2_+_107120934_107121005	0.005593809178493973	ACAUUCA	ENSMUST00000037012.3|Kcna4|ENSMUSG00000042604.6|potassium voltage-gated channel, shaker-related subfamily, member 4
mm39_v1_chr1_-_189902868_189902942	0.0047599955857190335	ACAUUCA	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr11_+_46701619_46701636	0.003914644305244561	ACAUUCA	ENSMUST00000068877.7|Timd4|ENSMUSG00000055546.7|T cell immunoglobulin and mucin domain containing 4
mm39_v1_chr6_-_122463422_122463515	0.0036592852025984076	ACAUUCA	ENSMUST00000068242.9|Rimklb|ENSMUSG00000040649.16|ribosomal modification protein rimK-like family member B
mm39_v1_chr12_+_80565764_80565861	0.002691935382731768	ACAUUCA	ENSMUST00000021558.8|Galnt16|ENSMUSG00000021130.9|polypeptide N-acetylgalactosaminyltransferase 16
mm39_v1_chr16_-_32688640_32688741	0.0024085067348707913	ACAUUCA	ENSMUST00000089684.10|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000040986.15|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000115105.9|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
mm39_v1_chr10_-_116417333_116417416	0.0023149507922064776	ACAUUCA	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr13_+_21546990_21547054	0.0019309995840650841	ACAUUCA	ENSMUST00000225545.2|Zscan12|ENSMUSG00000036721.15|zinc finger and SCAN domain containing 12	ENSMUST00000053293.14|Zscan12|ENSMUSG00000036721.15|zinc finger and SCAN domain containing 12
mm39_v1_chr10_+_112107026_112107026	0.0015057720419639057	ACAUUCA	ENSMUST00000219301.2|Kcnc2|ENSMUSG00000035681.8|potassium voltage gated channel, Shaw-related subfamily, member 2	ENSMUST00000092175.4|Kcnc2|ENSMUSG00000035681.8|potassium voltage gated channel, Shaw-related subfamily, member 2
mm39_v1_chr6_-_30693675_30693748	0.0014931513100830932	ACAUUCA	ENSMUST00000169422.8|Cep41|ENSMUSG00000029790.17|centrosomal protein 41	ENSMUST00000115131.8|Cep41|ENSMUSG00000029790.17|centrosomal protein 41	ENSMUST00000115130.3|Cep41|ENSMUSG00000029790.17|centrosomal protein 41	ENSMUST00000031810.15|Cep41|ENSMUSG00000029790.17|centrosomal protein 41
mm39_v1_chr8_-_100143029_100143103	0.0014202371770960522	ACAUUCA	ENSMUST00000155527.8|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000142129.8|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000093249.11|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000142475.3|Cdh8|ENSMUSG00000036510.18|cadherin 8	ENSMUST00000128860.8|Cdh8|ENSMUSG00000036510.18|cadherin 8
mm39_v1_chr6_-_39702381_39702413	0.0014167809438171385	ACAUUCA	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr10_-_117212860_117212883	0.0012148445330636551	ACAUUCA	ENSMUST00000069168.13|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6	ENSMUST00000176686.8|Cpsf6|ENSMUSG00000055531.13|cleavage and polyadenylation specific factor 6
mm39_v1_chr2_-_129151882_129151899	0.0010190974846844638	ACAUUCA	ENSMUST00000028882.2|Il1a|ENSMUSG00000027399.2|interleukin 1 alpha
mm39_v1_chr14_+_120513076_120513094	0.0010052067334631618	ACAUUCA	ENSMUST00000088419.13|Mbnl2|ENSMUSG00000022139.18|muscleblind like splicing factor 2
mm39_v1_chr9_-_122942196_122942280	0.0009592570931766471	ACAUUCA	ENSMUST00000238520.2|Zdhhc3|ENSMUSG00000025786.18|zinc finger, DHHC domain containing 3	ENSMUST00000147563.9|Zdhhc3|ENSMUSG00000025786.18|zinc finger, DHHC domain containing 3
mm39_v1_chr3_+_126157333_126157333	0.0007678047435344081	ACAUUCA	ENSMUST00000093976.4|Arsj|ENSMUSG00000046561.10|arylsulfatase J
mm39_v1_chrX_-_110372733_110372745	0.0005955128821369332	ACAUUCA	ENSMUST00000065976.12|Rps6ka6|ENSMUSG00000025665.17|ribosomal protein S6 kinase polypeptide 6
mm39_v1_chr15_+_9140685_9140752	0.0005324595811161715	ACAUUCA	ENSMUST00000090380.6|Lmbrd2|ENSMUSG00000039704.9|LMBR1 domain containing 2
mm39_v1_chr18_+_44513547_44513644	0.00048399759176205413	ACAUUCA	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr6_+_90439544_90439565	0.0004256879232766557	ACAUUCA	ENSMUST00000032174.12|Klf15|ENSMUSG00000030087.12|Kruppel-like factor 15
mm39_v1_chr13_-_96028412_96028503	0.0003807544197863592	ACAUUCA	ENSMUST00000068603.8|Iqgap2|ENSMUSG00000021676.11|IQ motif containing GTPase activating protein 2
mm39_v1_chr18_+_12466876_12467002	0.00014628504157008324	ACAUUCA	ENSMUST00000092070.13|Lama3|ENSMUSG00000024421.17|laminin, alpha 3
