mm39_v1_chr12_-_90705212_90705342	0.17631365550578468	ACUGGCC	ENSMUST00000082432.6|Dio2|ENSMUSG00000007682.8|deiodinase, iodothyronine, type II
mm39_v1_chr5_+_75735576_75735663	0.1671480868556556	ACUGGCC	ENSMUST00000144270.8|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase	ENSMUST00000005815.7|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase
mm39_v1_chr1_-_153208477_153208566	0.14332670595777106	ACUGGCC	ENSMUST00000027752.15|Lamc1|ENSMUSG00000026478.15|laminin, gamma 1
mm39_v1_chr9_+_106048116_106048153	0.13771781385656806	ACUGGCC	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr18_+_69478790_69478882	0.12362782838295694	ACUGGCC	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr2_+_109747984_109748003	0.11591480726603724	ACUGGCC	ENSMUST00000046548.14|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4	ENSMUST00000111037.3|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4
mm39_v1_chr11_-_51541610_51541678	0.11171203872679301	ACUGGCC	ENSMUST00000142721.2|N4bp3|ENSMUSG00000001053.16|NEDD4 binding protein 3	ENSMUST00000156835.8|N4bp3|ENSMUSG00000001053.16|NEDD4 binding protein 3	ENSMUST00000001080.16|N4bp3|ENSMUSG00000001053.16|NEDD4 binding protein 3
mm39_v1_chr18_+_78392969_78392969	0.10816360316774855	ACUGGCC	ENSMUST00000164064.2|Gm6133|ENSMUSG00000090451.2|predicted gene 6133
mm39_v1_chr10_+_128626772_128626838	0.09057072803639997	ACUGGCC	ENSMUST00000219404.2|Mmp19|ENSMUSG00000025355.8|matrix metallopeptidase 19	ENSMUST00000026411.8|Mmp19|ENSMUSG00000025355.8|matrix metallopeptidase 19
mm39_v1_chr1_+_93731662_93731721	0.08701591469521172	ACUGGCC	ENSMUST00000027505.13|Ing5|ENSMUSG00000026283.14|inhibitor of growth family, member 5
mm39_v1_chr1_+_43137852_43137871	0.0831239727545634	ACUGGCC	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chr11_+_105927698_105927716	0.08189195580322517	ACUGGCC	ENSMUST00000058438.9|Dcaf7|ENSMUSG00000049354.9|DDB1 and CUL4 associated factor 7
mm39_v1_chr11_-_49603501_49603555	0.07806358604137051	ACUGGCC	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr16_+_20354225_20354300	0.06950371408116769	ACUGGCC	ENSMUST00000090023.13|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000007216.9|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000232001.2|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit
mm39_v1_chr14_+_48683797_48683886	0.06750353760310901	ACUGGCC	ENSMUST00000111735.10|Tmem260|ENSMUSG00000036339.19|transmembrane protein 260
mm39_v1_chr6_+_7844759_7844859	0.05915574729196913	ACUGGCC	ENSMUST00000040159.6|C1galt1|ENSMUSG00000042460.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm39_v1_chr11_-_87878301_87878364	0.05154028619483885	ACUGGCC	ENSMUST00000020775.9|Dynll2|ENSMUSG00000020483.15|dynein light chain LC8-type 2
mm39_v1_chr12_+_100165694_100165773	0.045407589226682074	ACUGGCC	ENSMUST00000110082.11|Calm1|ENSMUSG00000001175.17|calmodulin 1
mm39_v1_chr3_-_105867415_105867415	0.043327564761479836	ACUGGCC	ENSMUST00000118209.8|Atp5pb|ENSMUSG00000000563.18|ATP synthase peripheral stalk-membrane subunit b
mm39_v1_chr11_+_60428788_60428810	0.042736239240336094	ACUGGCC	ENSMUST00000044250.4|Alkbh5|ENSMUSG00000042650.4|alkB homolog 5, RNA demethylase
mm39_v1_chr9_+_32607301_32607417	0.03967902787824849	ACUGGCC	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr9_-_79700660_79700712	0.03742063589357885	ACUGGCC	ENSMUST00000034878.12|Tmem30a|ENSMUSG00000032328.13|transmembrane protein 30A
mm39_v1_chr8_-_65302657_65302675	0.03735790528370972	ACUGGCC	ENSMUST00000034017.9|Klhl2|ENSMUSG00000031605.9|kelch-like 2, Mayven
mm39_v1_chr10_-_94780695_94780724	0.03663761197183447	ACUGGCC	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr5_-_139311371_139311382	0.03598721579208121	ACUGGCC	ENSMUST00000110865.2|Adap1|ENSMUSG00000056413.17|ArfGAP with dual PH domains 1
mm39_v1_chr2_-_60793536_60793595	0.03289020985574683	ACUGGCC	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr2_-_103627937_103628009	0.0314583886029735	ACUGGCC	ENSMUST00000028607.13|Caprin1|ENSMUSG00000027184.15|cell cycle associated protein 1
mm39_v1_chr6_-_87827993_87828088	0.030043039684480896	ACUGGCC	ENSMUST00000204890.3|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000113617.3|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000113619.8|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000204653.3|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein	ENSMUST00000032138.15|Cnbp|ENSMUSG00000030057.16|cellular nucleic acid binding protein
mm39_v1_chr3_+_151916059_151916102	0.027498957148782338	ACUGGCC	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr2_+_173918715_173918859	0.02739432242069442	ACUGGCC	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr4_-_141518202_141518252	0.02688025778529696	ACUGGCC	ENSMUST00000038014.11|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16	ENSMUST00000153880.2|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16
mm39_v1_chr6_-_145195903_145195988	0.026632593368072652	ACUGGCC	ENSMUST00000111710.8|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000155145.2|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000032399.12|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog	ENSMUST00000203147.3|Kras|ENSMUSG00000030265.15|Kirsten rat sarcoma viral oncogene homolog
mm39_v1_chr4_-_118148537_118148602	0.025471626336321943	ACUGGCC	ENSMUST00000049074.13|Ptprf|ENSMUSG00000033295.15|protein tyrosine phosphatase, receptor type, F
mm39_v1_chr10_+_92996686_92996756	0.023311006073786104	ACUGGCC	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr8_-_87472562_87472682	0.02231269004968239	ACUGGCC	ENSMUST00000045296.6|Siah1a|ENSMUSG00000036840.6|siah E3 ubiquitin protein ligase 1A
mm39_v1_chr15_-_36794741_36794791	0.021336773988103158	ACUGGCC	ENSMUST00000110361.8|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000022894.14|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	ENSMUST00000110359.2|Ywhaz|ENSMUSG00000022285.18|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm39_v1_chr3_-_94490023_94490077	0.0200923501198325	ACUGGCC	ENSMUST00000029783.16|Snx27|ENSMUSG00000028136.16|sorting nexin family member 27
mm39_v1_chr11_+_110956980_110957000	0.019732481527885207	ACUGGCC	ENSMUST00000042970.3|Kcnj2|ENSMUSG00000041695.3|potassium inwardly-rectifying channel, subfamily J, member 2
mm39_v1_chr12_-_86931529_86931580	0.019589915410129843	ACUGGCC	ENSMUST00000038422.8|Irf2bpl|ENSMUSG00000034168.8|interferon regulatory factor 2 binding protein-like
mm39_v1_chr2_+_24257576_24257634	0.018937562273346236	ACUGGCC	ENSMUST00000140547.2|Psd4|ENSMUSG00000026979.17|pleckstrin and Sec7 domain containing 4	ENSMUST00000102942.8|Psd4|ENSMUSG00000026979.17|pleckstrin and Sec7 domain containing 4
mm39_v1_chr2_+_162773440_162773581	0.01871586333115185	ACUGGCC	ENSMUST00000130411.7|Srsf6|ENSMUSG00000016921.15|serine and arginine-rich splicing factor 6	ENSMUST00000126163.3|Srsf6|ENSMUSG00000016921.15|serine and arginine-rich splicing factor 6
mm39_v1_chr9_+_35332837_35332913	0.015910411900519766	ACUGGCC	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr12_-_15866763_15866923	0.014040196316540035	ACUGGCC	ENSMUST00000020922.8|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221215.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221518.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2
mm39_v1_chr10_+_69369590_69369603	0.01357520621362427	ACUGGCC	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr9_+_113760002_113760055	0.013255865818358721	ACUGGCC	ENSMUST00000084885.12|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1	ENSMUST00000009885.14|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1
mm39_v1_chr9_+_108673171_108673330	0.01315574847698969	ACUGGCC	ENSMUST00000195514.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000085018.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000192028.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2
mm39_v1_chr13_+_49495025_49495099	0.011921005046809117	ACUGGCC	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr19_+_32734884_32734900	0.011196411723232613	ACUGGCC	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr7_-_115837034_115837056	0.010718360410942764	ACUGGCC	ENSMUST00000182834.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr12_+_98594388_98594462	0.010078913496329752	ACUGGCC	ENSMUST00000048402.12|Spata7|ENSMUSG00000021007.15|spermatogenesis associated 7	ENSMUST00000101144.10|Spata7|ENSMUSG00000021007.15|spermatogenesis associated 7	ENSMUST00000101146.4|Spata7|ENSMUSG00000021007.15|spermatogenesis associated 7
mm39_v1_chr10_-_128727542_128727587	0.0099153370380877	ACUGGCC	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr12_+_16860931_16861002	0.008528873300674726	ACUGGCC	ENSMUST00000020908.9|E2f6|ENSMUSG00000057469.9|E2F transcription factor 6
mm39_v1_chr6_+_134012602_134012683	0.008285375610708561	ACUGGCC	ENSMUST00000081028.13|Etv6|ENSMUSG00000030199.17|ets variant 6	ENSMUST00000111963.8|Etv6|ENSMUSG00000030199.17|ets variant 6
mm39_v1_chr5_+_28370687_28370720	0.0065457463270057106	ACUGGCC	ENSMUST00000036177.9|En2|ENSMUSG00000039095.9|engrailed 2
mm39_v1_chr3_-_95135946_95136043	0.0065067359053433745	ACUGGCC	ENSMUST00000065482.6|Mllt11|ENSMUSG00000053192.10|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11
mm39_v1_chr9_+_68561042_68561068	0.0063911629849446394	ACUGGCC	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr17_+_9020522_9020559	0.005090534379227917	ACUGGCC	ENSMUST00000089085.10|Pde10a|ENSMUSG00000023868.18|phosphodiesterase 10A
mm39_v1_chrX_+_9751861_9751861	0.004650659089608643	ACUGGCC	ENSMUST00000067529.9|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5	ENSMUST00000086165.4|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5
mm39_v1_chr3_-_153430741_153430816	0.004331460675875852	ACUGGCC	ENSMUST00000064460.7|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	ENSMUST00000200397.5|St6galnac3|ENSMUSG00000052544.10|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm39_v1_chr19_-_41790458_41790499	0.004256903651121676	ACUGGCC	ENSMUST00000026150.15|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000163265.9|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19	ENSMUST00000177495.2|Arhgap19|ENSMUSG00000025154.16|Rho GTPase activating protein 19
mm39_v1_chr12_-_12991828_12991915	0.004047894480156561	ACUGGCC	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr10_-_39009844_39009908	0.00377958878197351	ACUGGCC	ENSMUST00000134279.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000139743.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000149949.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000124941.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000125042.8|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B	ENSMUST00000063204.9|Fam229b|ENSMUSG00000051736.9|family with sequence similarity 229, member B
mm39_v1_chr18_+_38383297_38383340	0.002561497932259608	ACUGGCC	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr1_+_187730018_187730031	0.0024707127593302986	ACUGGCC	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr11_-_98436626_98436645	0.001881848882814958	ACUGGCC	ENSMUST00000103141.4|Ikzf3|ENSMUSG00000018168.9|IKAROS family zinc finger 3
mm39_v1_chr6_-_143892814_143892837	0.00187395991308851	ACUGGCC	ENSMUST00000124233.7|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000144289.4|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111748.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr4_+_13743424_13743478	0.0018037804307198964	ACUGGCC	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr2_-_140513382_140513399	0.0015908369526465406	ACUGGCC	ENSMUST00000110057.3|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr12_+_110452222_110452293	0.0009100157831802089	ACUGGCC	ENSMUST00000084985.11|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma	ENSMUST00000221074.2|Ppp2r5c|ENSMUSG00000017843.15|protein phosphatase 2, regulatory subunit B', gamma
mm39_v1_chr4_+_15881256_15881272	0.0006336339677990375	ACUGGCC	ENSMUST00000029876.2|Calb1|ENSMUSG00000028222.3|calbindin 1
mm39_v1_chr5_-_103247920_103247954	0.00024287610712864287	ACUGGCC	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr10_-_108846816_108846844	0.00016243670671309816	ACUGGCC	ENSMUST00000105276.8|Syt1|ENSMUSG00000035864.15|synaptotagmin I	ENSMUST00000064054.14|Syt1|ENSMUSG00000035864.15|synaptotagmin I
