mm39_v1_chr10_-_59787646_59787663	0.34850812220333127	AGCUGCC	ENSMUST00000020308.5|Ddit4|ENSMUSG00000020108.5|DNA-damage-inducible transcript 4
mm39_v1_chr9_-_43017249_43017322	0.19351675549113503	AGCUGCC	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr4_+_148125630_148125656	0.14924593280233944	AGCUGCC	ENSMUST00000069604.15|Mthfr|ENSMUSG00000029009.18|methylenetetrahydrofolate reductase
mm39_v1_chr13_+_49761506_49761539	0.10919924225417937	AGCUGCC	ENSMUST00000021822.7|Ogn|ENSMUSG00000021390.7|osteoglycin
mm39_v1_chr7_+_127344942_127344999	0.10727127315694751	AGCUGCC	ENSMUST00000189562.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19	ENSMUST00000186116.7|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr14_-_70837253_70837327	0.09780424515041879	AGCUGCC	ENSMUST00000022690.10|Fam160b2|ENSMUSG00000022095.10|family with sequence similarity 160, member B2
mm39_v1_chr2_+_31042328_31042372	0.09685842273940082	AGCUGCC	ENSMUST00000056433.7|Gpr107|ENSMUSG00000000194.14|G protein-coupled receptor 107
mm39_v1_chr4_-_136563154_136563299	0.09474803171977607	AGCUGCC	ENSMUST00000105846.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000059287.14|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000105845.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2
mm39_v1_chr7_+_99184645_99184709	0.09404034064042753	AGCUGCC	ENSMUST00000098266.9|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1	ENSMUST00000179755.8|Arrb1|ENSMUSG00000018909.16|arrestin, beta 1
mm39_v1_chr3_+_129326004_129326089	0.09286206365190773	AGCUGCC	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr3_+_99048379_99048388	0.08814077869198178	AGCUGCC	ENSMUST00000004343.7|Wars2|ENSMUSG00000004233.15|tryptophanyl tRNA synthetase 2 (mitochondrial)
mm39_v1_chr10_+_4561974_4562075	0.08540335506406127	AGCUGCC	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr17_-_48716756_48716934	0.08475476965282062	AGCUGCC	ENSMUST00000160319.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000159535.2|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000078800.13|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000046719.14|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha	ENSMUST00000162460.8|Nfya|ENSMUSG00000023994.14|nuclear transcription factor-Y alpha
mm39_v1_chr16_+_13721016_13721074	0.08289312168667658	AGCUGCC	ENSMUST00000128757.8|Mpv17l|ENSMUSG00000022679.14|Mpv17 transgene, kidney disease mutant-like
mm39_v1_chr2_-_62242562_62242581	0.07990942929218993	AGCUGCC	ENSMUST00000047812.8|Dpp4|ENSMUSG00000035000.9|dipeptidylpeptidase 4
mm39_v1_chr7_+_43959637_43959677	0.07761419036540405	AGCUGCC	ENSMUST00000107938.8|Shank1|ENSMUSG00000038738.16|SH3 and multiple ankyrin repeat domains 1
mm39_v1_chr16_-_4536992_4537028	0.07306334790406659	AGCUGCC	ENSMUST00000115851.10|Nmral1|ENSMUSG00000063445.15|NmrA-like family domain containing 1
mm39_v1_chr1_-_74544946_74545004	0.07250643342644622	AGCUGCC	ENSMUST00000044260.11|Usp37|ENSMUSG00000033364.14|ubiquitin specific peptidase 37	ENSMUST00000186282.7|Usp37|ENSMUSG00000033364.14|ubiquitin specific peptidase 37
mm39_v1_chr18_+_36797113_36797177	0.07216884043428377	AGCUGCC	ENSMUST00000036765.8|Eif4ebp3|ENSMUSG00000090264.2|eukaryotic translation initiation factor 4E binding protein 3
mm39_v1_chr4_-_135000109_135000130	0.06882525656931479	AGCUGCC	ENSMUST00000037099.9|Clic4|ENSMUSG00000037242.9|chloride intracellular channel 4 (mitochondrial)
mm39_v1_chr14_+_56122404_56122467	0.0670000143714115	AGCUGCC	ENSMUST00000022831.5|Khnyn|ENSMUSG00000047153.5|KH and NYN domain containing
mm39_v1_chr1_-_34882131_34882148	0.0667500294305278	AGCUGCC	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr17_+_29833760_29833796	0.06626563994442997	AGCUGCC	ENSMUST00000024817.15|Rnf8|ENSMUSG00000090083.12|ring finger protein 8	ENSMUST00000162588.3|Rnf8|ENSMUSG00000090083.12|ring finger protein 8
mm39_v1_chr19_+_57441332_57441389	0.06490017784419844	AGCUGCC	ENSMUST00000026073.14|Trub1|ENSMUSG00000025086.14|TruB pseudouridine (psi) synthase family member 1	ENSMUST00000026072.5|Trub1|ENSMUSG00000025086.14|TruB pseudouridine (psi) synthase family member 1	ENSMUST00000238107.2|Trub1|ENSMUSG00000025086.14|TruB pseudouridine (psi) synthase family member 1
mm39_v1_chr9_+_44410417_44410569	0.06356628526835913	AGCUGCC	ENSMUST00000074989.7|Bcl9l|ENSMUSG00000063382.7|B cell CLL/lymphoma 9-like	ENSMUST00000218913.2|Bcl9l|ENSMUSG00000063382.7|B cell CLL/lymphoma 9-like
mm39_v1_chr2_+_90575714_90575813	0.06271247205034346	AGCUGCC	ENSMUST00000238890.2|Fnbp4|ENSMUSG00000008200.16|formin binding protein 4	ENSMUST00000013759.6|Fnbp4|ENSMUSG00000008200.16|formin binding protein 4
mm39_v1_chr8_-_70591799_70591812	0.05992859219135464	AGCUGCC	ENSMUST00000075724.9|Rfxank|ENSMUSG00000036120.11|regulatory factor X-associated ankyrin-containing protein
mm39_v1_chr9_+_106048116_106048153	0.05989772191215002	AGCUGCC	ENSMUST00000020490.13|Wdr82|ENSMUSG00000020257.14|WD repeat domain containing 82
mm39_v1_chr11_-_97635484_97635571	0.05783422386881468	AGCUGCC	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chr5_+_108213608_108213634	0.05735210992665676	AGCUGCC	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr11_-_106107132_106107189	0.057103384781498054	AGCUGCC	ENSMUST00000002043.10|Ccdc47|ENSMUSG00000078622.9|coiled-coil domain containing 47
mm39_v1_chr11_+_98798627_98798692	0.05610207640958142	AGCUGCC	ENSMUST00000092706.13|Cdc6|ENSMUSG00000017499.16|cell division cycle 6
mm39_v1_chr13_+_5911481_5911521	0.0543237714428852	AGCUGCC	ENSMUST00000000080.8|Klf6|ENSMUSG00000000078.8|Kruppel-like factor 6
mm39_v1_chr2_-_155771938_155771988	0.05291539162704061	AGCUGCC	ENSMUST00000152766.8|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000139232.8|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000109632.8|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000006036.13|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000142655.2|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1	ENSMUST00000159238.2|Uqcc1|ENSMUSG00000005882.19|ubiquinol-cytochrome c reductase complex assembly factor 1
mm39_v1_chr19_+_44551280_44551318	0.05242695476097137	AGCUGCC	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr8_+_27575611_27575626	0.051472999277701215	AGCUGCC	ENSMUST00000178514.8|Adgra2|ENSMUSG00000031486.16|adhesion G protein-coupled receptor A2	ENSMUST00000033876.14|Adgra2|ENSMUSG00000031486.16|adhesion G protein-coupled receptor A2
mm39_v1_chr10_+_84753480_84753520	0.05055323107882021	AGCUGCC	ENSMUST00000038523.15|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000214693.2|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000095385.5|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B
mm39_v1_chr17_+_29312737_29312755	0.05046979550970819	AGCUGCC	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
mm39_v1_chr9_-_45847344_45847404	0.05016366992490084	AGCUGCC	ENSMUST00000034590.4|Tagln|ENSMUSG00000032085.6|transgelin
mm39_v1_chr5_-_74229021_74229099	0.04865839153505052	AGCUGCC	ENSMUST00000119154.8|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46	ENSMUST00000068058.14|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46
mm39_v1_chr15_-_76541105_76541135	0.044485489428249224	AGCUGCC	ENSMUST00000176274.2|Cyhr1|ENSMUSG00000053929.18|cysteine and histidine rich 1
mm39_v1_chr4_+_59805829_59805914	0.04418830215721219	AGCUGCC	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr9_+_57615816_57615891	0.04385599450699024	AGCUGCC	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr16_-_32065972_32065997	0.0436327295918008	AGCUGCC	ENSMUST00000042732.6|Fbxo45|ENSMUSG00000035764.6|F-box protein 45
mm39_v1_chr2_+_38821987_38822019	0.043627011899964804	AGCUGCC	ENSMUST00000057279.6|Olfml2a|ENSMUSG00000046618.8|olfactomedin-like 2A
mm39_v1_chr2_+_22785534_22785581	0.041988870807769654	AGCUGCC	ENSMUST00000053729.14|Pdss1|ENSMUSG00000026784.15|prenyl (solanesyl) diphosphate synthase, subunit 1
mm39_v1_chr15_-_53765869_53765926	0.04194932014413505	AGCUGCC	ENSMUST00000078673.14|Samd12|ENSMUSG00000058656.14|sterile alpha motif domain containing 12
mm39_v1_chr7_+_108610032_108610042	0.04187412822021001	AGCUGCC	ENSMUST00000033341.12|Tub|ENSMUSG00000031028.15|tubby bipartite transcription factor
mm39_v1_chr3_-_97134680_97134738	0.04029137522864655	AGCUGCC	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr16_-_4340920_4340939	0.0401950901580147	AGCUGCC	ENSMUST00000090500.10|Srl|ENSMUSG00000022519.15|sarcalumenin	ENSMUST00000023161.8|Srl|ENSMUSG00000022519.15|sarcalumenin
mm39_v1_chr4_-_108436514_108436549	0.03974078616741907	AGCUGCC	ENSMUST00000079213.6|Prpf38a|ENSMUSG00000063800.6|PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
mm39_v1_chr4_+_140427799_140427855	0.03880398827639754	AGCUGCC	ENSMUST00000071169.9|Rcc2|ENSMUSG00000040945.14|regulator of chromosome condensation 2
mm39_v1_chr1_-_189902868_189902942	0.03581060508427215	AGCUGCC	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr13_-_34314328_34314344	0.03497183821661637	AGCUGCC	ENSMUST00000075774.5|Tubb2b|ENSMUSG00000045136.7|tubulin, beta 2B class IIB
mm39_v1_chr9_+_121946321_121946401	0.03410953230253525	AGCUGCC	ENSMUST00000119215.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000146832.8|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000118886.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000120173.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000139181.2|Snrk|ENSMUSG00000038145.18|SNF related kinase
mm39_v1_chr1_-_92107971_92108063	0.034083234852004984	AGCUGCC	ENSMUST00000186002.3|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4	ENSMUST00000097644.9|Hdac4|ENSMUSG00000026313.17|histone deacetylase 4
mm39_v1_chr19_-_5925296_5925307	0.034048637179576735	AGCUGCC	ENSMUST00000025728.13|Frmd8|ENSMUSG00000024816.13|FERM domain containing 8
mm39_v1_chr4_-_149783097_149783165	0.03319348317758563	AGCUGCC	ENSMUST00000038859.14|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	ENSMUST00000105690.9|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
mm39_v1_chr6_-_83294526_83294593	0.03170798332271413	AGCUGCC	ENSMUST00000005810.9|Mthfd2|ENSMUSG00000005667.9|methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase
mm39_v1_chr5_-_102217770_102217807	0.031425144802347725	AGCUGCC	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr17_+_29879569_29879680	0.031222216084875614	AGCUGCC	ENSMUST00000024816.13|Cmtr1|ENSMUSG00000024019.19|cap methyltransferase 1	ENSMUST00000235031.2|Cmtr1|ENSMUSG00000024019.19|cap methyltransferase 1	ENSMUST00000234911.2|Cmtr1|ENSMUSG00000024019.19|cap methyltransferase 1
mm39_v1_chr7_+_109617456_109617481	0.030823330700541128	AGCUGCC	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr2_+_90770742_90770888	0.029645573570863563	AGCUGCC	ENSMUST00000005643.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111451.10|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000177642.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068726.13|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068747.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr11_+_98727611_98727654	0.029636993383236398	AGCUGCC	ENSMUST00000107479.3|Rapgefl1|ENSMUSG00000038020.6|Rap guanine nucleotide exchange factor (GEF)-like 1
mm39_v1_chr9_+_56902172_56902207	0.029390016836405387	AGCUGCC	ENSMUST00000034832.8|Ptpn9|ENSMUSG00000032290.8|protein tyrosine phosphatase, non-receptor type 9
mm39_v1_chr6_+_31375670_31375795	0.029059354833253063	AGCUGCC	ENSMUST00000026699.15|Mkln1|ENSMUSG00000025609.16|muskelin 1, intracellular mediator containing kelch motifs
mm39_v1_chr10_+_128212953_128213024	0.028649129597183312	AGCUGCC	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr3_-_145355725_145355743	0.028496249140686745	AGCUGCC	ENSMUST00000029846.5|Ccn1|ENSMUSG00000028195.5|cellular communication network factor 1
mm39_v1_chr1_+_133058881_133058992	0.028483505651713818	AGCUGCC	ENSMUST00000052529.4|Ppp1r15b|ENSMUSG00000046062.6|protein phosphatase 1, regulatory subunit 15B
mm39_v1_chr13_-_3968157_3968220	0.028431735247335527	AGCUGCC	ENSMUST00000223258.2|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1	ENSMUST00000091853.12|Net1|ENSMUSG00000021215.16|neuroepithelial cell transforming gene 1
mm39_v1_chr12_-_105651437_105651490	0.02754825158282616	AGCUGCC	ENSMUST00000041055.9|Atg2b|ENSMUSG00000041341.11|autophagy related 2B
mm39_v1_chr5_-_124465946_124466035	0.02750375636161871	AGCUGCC	ENSMUST00000031344.13|Mphosph9|ENSMUSG00000038126.18|M-phase phosphoprotein 9
mm39_v1_chr1_-_151965876_151965918	0.02709245353779686	AGCUGCC	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr16_+_58548273_58548426	0.026802525718301808	AGCUGCC	ENSMUST00000023426.12|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1	ENSMUST00000162057.8|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1	ENSMUST00000162191.2|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1
mm39_v1_chr5_-_134581235_134581331	0.026779779606399285	AGCUGCC	ENSMUST00000036999.10|Clip2|ENSMUSG00000063146.12|CAP-GLY domain containing linker protein 2	ENSMUST00000100647.7|Clip2|ENSMUSG00000063146.12|CAP-GLY domain containing linker protein 2
mm39_v1_chr11_+_115714853_115714923	0.02676607530818959	AGCUGCC	ENSMUST00000103032.11|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000133250.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000177736.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component
mm39_v1_chr5_-_140634773_140634807	0.026080311703163224	AGCUGCC	ENSMUST00000197452.5|Ttyh3|ENSMUSG00000036565.8|tweety family member 3	ENSMUST00000042661.8|Ttyh3|ENSMUSG00000036565.8|tweety family member 3
mm39_v1_chr3_+_102965601_102965684	0.02579818466097591	AGCUGCC	ENSMUST00000029445.13|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene	ENSMUST00000200069.5|Nras|ENSMUSG00000027852.15|neuroblastoma ras oncogene
mm39_v1_chr3_+_96088467_96088483	0.025554279527164235	AGCUGCC	ENSMUST00000035371.9|Sv2a|ENSMUSG00000038486.10|synaptic vesicle glycoprotein 2 a
mm39_v1_chr10_+_25235696_25235742	0.025535913977941686	AGCUGCC	ENSMUST00000053748.16|Epb41l2|ENSMUSG00000019978.17|erythrocyte membrane protein band 4.1 like 2
mm39_v1_chr10_+_52293617_52293677	0.025488490067797773	AGCUGCC	ENSMUST00000023830.16|Nus1|ENSMUSG00000023068.17|NUS1 dehydrodolichyl diphosphate synthase subunit
mm39_v1_chr2_-_153371861_153371907	0.025388047320919434	AGCUGCC	ENSMUST00000035346.14|Nol4l|ENSMUSG00000061411.13|nucleolar protein 4-like
mm39_v1_chr8_+_23349543_23349570	0.025301701007017393	AGCUGCC	ENSMUST00000238975.2|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000110696.8|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A	ENSMUST00000044331.7|Kat6a|ENSMUSG00000031540.15|K(lysine) acetyltransferase 6A
mm39_v1_chr4_+_133097013_133097020	0.025157472584666885	AGCUGCC	ENSMUST00000030669.8|Slc9a1|ENSMUSG00000028854.10|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm39_v1_chr16_+_24212284_24212320	0.02499602422207445	AGCUGCC	ENSMUST00000038053.14|Lpp|ENSMUSG00000033306.16|LIM domain containing preferred translocation partner in lipoma
mm39_v1_chr11_-_119119287_119119330	0.023828909938435925	AGCUGCC	ENSMUST00000207655.2|Tbc1d16|ENSMUSG00000039976.5|TBC1 domain family, member 16	ENSMUST00000036113.4|Tbc1d16|ENSMUSG00000039976.5|TBC1 domain family, member 16
mm39_v1_chr16_+_37597235_37597235	0.02340854653196303	AGCUGCC	ENSMUST00000114763.3|Fstl1|ENSMUSG00000022816.12|follistatin-like 1
mm39_v1_chrX_-_72868544_72868592	0.022895770309934917	AGCUGCC	ENSMUST00000002080.12|Pdzd4|ENSMUSG00000002006.13|PDZ domain containing 4	ENSMUST00000114438.3|Pdzd4|ENSMUSG00000002006.13|PDZ domain containing 4
mm39_v1_chr17_-_84773544_84773612	0.022720207258717255	AGCUGCC	ENSMUST00000047524.10|Thada|ENSMUSG00000024251.11|thyroid adenoma associated
mm39_v1_chr1_-_192812509_192812580	0.02218539378378658	AGCUGCC	ENSMUST00000085555.7|Utp25|ENSMUSG00000016181.10|UTP25 small subunit processome component
mm39_v1_chr3_-_107425316_107425339	0.02203614933490343	AGCUGCC	ENSMUST00000169449.8|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17	ENSMUST00000029499.15|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17
mm39_v1_chr1_-_190643922_190644009	0.020685282621072686	AGCUGCC	ENSMUST00000159066.2|Rps6kc1|ENSMUSG00000089872.11|ribosomal protein S6 kinase polypeptide 1	ENSMUST00000061611.15|Rps6kc1|ENSMUSG00000089872.11|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr7_+_92524460_92524485	0.020621426476078186	AGCUGCC	ENSMUST00000076052.8|Prcp|ENSMUSG00000061119.8|prolylcarboxypeptidase (angiotensinase C)
mm39_v1_chr6_-_72416531_72416548	0.020551718580756145	AGCUGCC	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr11_-_18968979_18968990	0.020514481225337812	AGCUGCC	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr11_-_95956176_95956214	0.020465376462420453	AGCUGCC	ENSMUST00000100528.5|Ube2z|ENSMUSG00000014349.8|ubiquitin-conjugating enzyme E2Z
mm39_v1_chr13_-_111626562_111626645	0.01997620627135952	AGCUGCC	ENSMUST00000091236.11|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1	ENSMUST00000047627.14|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1
mm39_v1_chr12_+_3857001_3857064	0.019394619427474596	AGCUGCC	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr9_+_107879700_107879879	0.01938821384484327	AGCUGCC	ENSMUST00000035214.11|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000176854.7|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1	ENSMUST00000175874.2|Ip6k1|ENSMUSG00000032594.12|inositol hexaphosphate kinase 1
mm39_v1_chrX_-_73129195_73129296	0.018983848587188802	AGCUGCC	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr11_-_49603501_49603555	0.018739217465064573	AGCUGCC	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chrX_-_149879501_149879539	0.018700803758160238	AGCUGCC	ENSMUST00000112683.9|Tsr2|ENSMUSG00000025264.13|TSR2 20S rRNA accumulation	ENSMUST00000026295.10|Tsr2|ENSMUSG00000025264.13|TSR2 20S rRNA accumulation
mm39_v1_chr1_+_127132712_127132788	0.018605666423253803	AGCUGCC	ENSMUST00000038361.11|Mgat5|ENSMUSG00000036155.14|mannoside acetylglucosaminyltransferase 5
mm39_v1_chr3_-_107240989_107240989	0.018570147919604485	AGCUGCC	ENSMUST00000061772.11|Rbm15|ENSMUSG00000048109.11|RNA binding motif protein 15
mm39_v1_chr4_-_131871797_131871842	0.018425537005545084	AGCUGCC	ENSMUST00000056336.2|Oprd1|ENSMUSG00000050511.2|opioid receptor, delta 1
mm39_v1_chr9_+_109704609_109704684	0.018279734842257343	AGCUGCC	ENSMUST00000094324.8|Cdc25a|ENSMUSG00000032477.15|cell division cycle 25A
mm39_v1_chr14_-_54646917_54646934	0.01823957101995491	AGCUGCC	ENSMUST00000000984.9|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr4_-_129083335_129083387	0.01812217274575277	AGCUGCC	ENSMUST00000106061.9|S100pbp|ENSMUSG00000040928.16|S100P binding protein	ENSMUST00000072431.13|S100pbp|ENSMUSG00000040928.16|S100P binding protein
mm39_v1_chr18_-_43571345_43571371	0.017883084499856622	AGCUGCC	ENSMUST00000121805.9|Dpysl3|ENSMUSG00000024501.21|dihydropyrimidinase-like 3
mm39_v1_chr16_+_17051423_17051528	0.017800874647148718	AGCUGCC	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr14_-_75185281_75185324	0.016811850483576737	AGCUGCC	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr17_+_46694646_46694718	0.016774681519667135	AGCUGCC	ENSMUST00000113481.9|Zfp318|ENSMUSG00000015597.18|zinc finger protein 318	ENSMUST00000138127.8|Zfp318|ENSMUSG00000015597.18|zinc finger protein 318
mm39_v1_chr18_-_39623698_39623771	0.016102494182674777	AGCUGCC	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr5_-_66775979_66776056	0.015991052386925202	AGCUGCC	ENSMUST00000162382.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000159786.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000162349.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000087256.12|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160103.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2	ENSMUST00000160870.8|Apbb2|ENSMUSG00000029207.17|amyloid beta (A4) precursor protein-binding, family B, member 2
mm39_v1_chr2_+_167774247_167774300	0.015168296550818422	AGCUGCC	ENSMUST00000029053.8|Ptpn1|ENSMUSG00000027540.14|protein tyrosine phosphatase, non-receptor type 1
mm39_v1_chr7_-_105289515_105289623	0.014915742007929299	AGCUGCC	ENSMUST00000133519.8|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000209550.2|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000210911.2|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000084782.10|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2	ENSMUST00000131446.8|Arfip2|ENSMUSG00000030881.16|ADP-ribosylation factor interacting protein 2
mm39_v1_chr12_+_80837284_80837348	0.014705135463888238	AGCUGCC	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr18_+_31937129_31937229	0.014676584535700664	AGCUGCC	ENSMUST00000082319.15|Wdr33|ENSMUSG00000024400.17|WD repeat domain 33	ENSMUST00000234957.2|Wdr33|ENSMUSG00000024400.17|WD repeat domain 33	ENSMUST00000025264.8|Wdr33|ENSMUSG00000024400.17|WD repeat domain 33	ENSMUST00000234344.2|Wdr33|ENSMUSG00000024400.17|WD repeat domain 33
mm39_v1_chr11_-_6425877_6425917	0.014669147999812657	AGCUGCC	ENSMUST00000179343.3|Purb|ENSMUSG00000094483.3|purine rich element binding protein B
mm39_v1_chr13_+_107083613_107083675	0.014667478425216242	AGCUGCC	ENSMUST00000022203.10|Dimt1|ENSMUSG00000021692.10|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
mm39_v1_chr8_+_91555449_91555470	0.014656989893006503	AGCUGCC	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr11_+_83855245_83855304	0.014477508486077298	AGCUGCC	ENSMUST00000049714.15|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000092834.12|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000183714.8|Synrg|ENSMUSG00000034940.16|synergin, gamma	ENSMUST00000183456.8|Synrg|ENSMUSG00000034940.16|synergin, gamma
mm39_v1_chr4_-_135112956_135112983	0.014425617137561098	AGCUGCC	ENSMUST00000105857.8|Ncmap|ENSMUSG00000043924.17|noncompact myelin associated protein	ENSMUST00000105858.8|Ncmap|ENSMUSG00000043924.17|noncompact myelin associated protein	ENSMUST00000064481.15|Ncmap|ENSMUSG00000043924.17|noncompact myelin associated protein	ENSMUST00000123632.2|Ncmap|ENSMUSG00000043924.17|noncompact myelin associated protein
mm39_v1_chr4_+_129083553_129083751	0.014279424437796602	AGCUGCC	ENSMUST00000106054.4|Yars|ENSMUSG00000028811.13|tyrosyl-tRNA synthetase
mm39_v1_chr10_-_61288437_61288589	0.013829695986642555	AGCUGCC	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chrX_+_141464393_141464425	0.013798447406604417	AGCUGCC	ENSMUST00000112889.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000101198.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000112891.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000087333.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164
mm39_v1_chr4_+_62883796_62883854	0.013539784408933522	AGCUGCC	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr13_+_93444514_93444542	0.01325175645877793	AGCUGCC	ENSMUST00000079086.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr5_-_122492223_122492300	0.012808867701518884	AGCUGCC	ENSMUST00000117263.8|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B	ENSMUST00000049009.7|Rad9b|ENSMUSG00000038569.14|RAD9 checkpoint clamp component B
mm39_v1_chr5_+_64317550_64317564	0.012631555990926366	AGCUGCC	ENSMUST00000101195.9|Tbc1d1|ENSMUSG00000029174.19|TBC1 domain family, member 1
mm39_v1_chr12_+_83678987_83679099	0.012544705714808608	AGCUGCC	ENSMUST00000048155.16|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182618.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000183154.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182036.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25	ENSMUST00000182347.8|Rbm25|ENSMUSG00000010608.16|RNA binding motif protein 25
mm39_v1_chr7_+_127441119_127441140	0.01253097107401457	AGCUGCC	ENSMUST00000121705.8|Stx4a|ENSMUSG00000030805.15|syntaxin 4A (placental)
mm39_v1_chr16_+_42727926_42728047	0.012349450730445619	AGCUGCC	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr11_+_68393845_68393902	0.011857114576569999	AGCUGCC	ENSMUST00000102613.8|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5	ENSMUST00000060441.7|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5
mm39_v1_chr11_-_94133527_94133539	0.011822121887680406	AGCUGCC	ENSMUST00000061469.4|Wfikkn2|ENSMUSG00000044177.5|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm39_v1_chr4_-_108637979_108638000	0.01171247875579109	AGCUGCC	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr3_-_89309944_89310100	0.01137297513434354	AGCUGCC	ENSMUST00000057431.6|Lenep|ENSMUSG00000078173.4|lens epithelial protein
mm39_v1_chr6_-_57512355_57512433	0.011316810611651233	AGCUGCC	ENSMUST00000042766.6|Ppm1k|ENSMUSG00000037826.6|protein phosphatase 1K (PP2C domain containing)
mm39_v1_chr13_+_55517545_55517589	0.011175538567093208	AGCUGCC	ENSMUST00000063771.14|Rgs14|ENSMUSG00000052087.15|regulator of G-protein signaling 14
mm39_v1_chr7_+_58878490_58878518	0.010953708496435849	AGCUGCC	ENSMUST00000202945.4|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A	ENSMUST00000107537.5|Ube3a|ENSMUSG00000025326.13|ubiquitin protein ligase E3A
mm39_v1_chr1_-_173195236_173195261	0.010790879278986627	AGCUGCC	ENSMUST00000005470.5|Cadm3|ENSMUSG00000005338.15|cell adhesion molecule 3	ENSMUST00000111220.8|Cadm3|ENSMUSG00000005338.15|cell adhesion molecule 3
mm39_v1_chr9_+_54193763_54193778	0.010386634616566106	AGCUGCC	ENSMUST00000056740.6|Gldn|ENSMUSG00000046167.6|gliomedin
mm39_v1_chr15_-_102425241_102425499	0.009928427384975898	AGCUGCC	ENSMUST00000169162.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000023812.10|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000165174.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169367.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169377.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12
mm39_v1_chr1_-_57011595_57011661	0.00987209553558307	AGCUGCC	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chr4_+_43578707_43578772	0.009633021847117082	AGCUGCC	ENSMUST00000107886.9|Rgp1|ENSMUSG00000028468.16|RAB6A GEF compex partner 1	ENSMUST00000117140.8|Rgp1|ENSMUSG00000028468.16|RAB6A GEF compex partner 1
mm39_v1_chr8_+_26008773_26008788	0.00929976419670024	AGCUGCC	ENSMUST00000084027.13|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000178276.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000179592.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1
mm39_v1_chr8_-_122379631_122379652	0.009258273684923173	AGCUGCC	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr7_-_132725075_132725107	0.00904043655880556	AGCUGCC	ENSMUST00000163601.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2	ENSMUST00000124096.8|Fgfr2|ENSMUSG00000030849.19|fibroblast growth factor receptor 2	ENSMUST00000033269.15|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr3_-_133250129_133250174	0.00899026890248717	AGCUGCC	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr14_+_69266566_69266687	0.008694098848565947	AGCUGCC	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chrX_-_149372840_149372858	0.008594659650769866	AGCUGCC	ENSMUST00000112725.8|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2	ENSMUST00000112720.8|Apex2|ENSMUSG00000025269.17|apurinic/apyrimidinic endonuclease 2
mm39_v1_chr11_+_96820091_96820175	0.00859459391031927	AGCUGCC	ENSMUST00000054311.6|Prr15l|ENSMUSG00000047040.10|proline rich 15-like	ENSMUST00000107636.4|Prr15l|ENSMUSG00000047040.10|proline rich 15-like
mm39_v1_chr12_-_77008952_77009014	0.008448678504162515	AGCUGCC	ENSMUST00000110395.11|Max|ENSMUSG00000059436.14|Max protein	ENSMUST00000082136.7|Max|ENSMUSG00000059436.14|Max protein
mm39_v1_chr16_-_8610165_8610190	0.007981101377474866	AGCUGCC	ENSMUST00000160405.8|Usp7|ENSMUSG00000022710.18|ubiquitin specific peptidase 7
mm39_v1_chr10_-_122912272_122912410	0.007861818572692681	AGCUGCC	ENSMUST00000219203.2|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking	ENSMUST00000073792.11|Mon2|ENSMUSG00000034602.16|MON2 homolog, regulator of endosome to Golgi trafficking
mm39_v1_chr11_-_70578744_70578774	0.007788333278567247	AGCUGCC	ENSMUST00000108545.9|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2	ENSMUST00000120261.8|Camta2|ENSMUSG00000040712.17|calmodulin binding transcription activator 2
mm39_v1_chr4_+_137196080_137196124	0.0076920606776158746	AGCUGCC	ENSMUST00000030547.15|Hspg2|ENSMUSG00000028763.19|perlecan (heparan sulfate proteoglycan 2)	ENSMUST00000171332.2|Hspg2|ENSMUSG00000028763.19|perlecan (heparan sulfate proteoglycan 2)
mm39_v1_chr6_-_134769558_134769645	0.007672734177605404	AGCUGCC	ENSMUST00000100857.10|Dusp16|ENSMUSG00000030203.18|dual specificity phosphatase 16
mm39_v1_chr7_+_127084283_127084393	0.007647859304919741	AGCUGCC	ENSMUST00000048896.8|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr17_-_46867083_46867114	0.0076153058511951735	AGCUGCC	ENSMUST00000015749.7|Srf|ENSMUSG00000015605.7|serum response factor
mm39_v1_chr5_+_139893698_139893698	0.007473791238684304	AGCUGCC	ENSMUST00000050519.8|Elfn1|ENSMUSG00000048988.9|leucine rich repeat and fibronectin type III, extracellular 1
mm39_v1_chr2_+_5849828_5849880	0.00718718540655134	AGCUGCC	ENSMUST00000026927.10|Nudt5|ENSMUSG00000025817.13|nudix (nucleoside diphosphate linked moiety X)-type motif 5	ENSMUST00000179748.8|Nudt5|ENSMUSG00000025817.13|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm39_v1_chr1_+_42734889_42734937	0.006697697447921435	AGCUGCC	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr1_+_190830522_190830633	0.0066713488475627445	AGCUGCC	ENSMUST00000027943.6|Batf3|ENSMUSG00000026630.10|basic leucine zipper transcription factor, ATF-like 3
mm39_v1_chr14_-_66191177_66191384	0.0066369264132541276	AGCUGCC	ENSMUST00000042046.5|Scara3|ENSMUSG00000034463.5|scavenger receptor class A, member 3
mm39_v1_chr11_+_105975403_105975449	0.0062694802511032545	AGCUGCC	ENSMUST00000002044.10|Map3k3|ENSMUSG00000020700.12|mitogen-activated protein kinase kinase kinase 3
mm39_v1_chr2_-_163760603_163760603	0.006059444492727422	AGCUGCC	ENSMUST00000044734.3|Rims4|ENSMUSG00000035226.6|regulating synaptic membrane exocytosis 4
mm39_v1_chr16_-_91394522_91394688	0.006049675714397803	AGCUGCC	ENSMUST00000023686.15|Tmem50b|ENSMUSG00000022964.15|transmembrane protein 50B
mm39_v1_chr11_-_61745843_61745899	0.00582609289958085	AGCUGCC	ENSMUST00000004920.4|Ulk2|ENSMUSG00000004798.15|unc-51 like kinase 2
mm39_v1_chr10_-_128481833_128481881	0.0056641483767801894	AGCUGCC	ENSMUST00000133342.10|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr17_+_28910302_28910316	0.005622041787710042	AGCUGCC	ENSMUST00000004990.14|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000114754.8|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000062694.16|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14
mm39_v1_chr1_-_134289670_134289736	0.005014107646383302	AGCUGCC	ENSMUST00000049470.11|Tmem183a|ENSMUSG00000042305.13|transmembrane protein 183A
mm39_v1_chr1_+_32211792_32211968	0.00495949664978743	AGCUGCC	ENSMUST00000027226.12|Khdrbs2|ENSMUSG00000026058.12|KH domain containing, RNA binding, signal transduction associated 2	ENSMUST00000189878.2|Khdrbs2|ENSMUSG00000026058.12|KH domain containing, RNA binding, signal transduction associated 2	ENSMUST00000188257.7|Khdrbs2|ENSMUSG00000026058.12|KH domain containing, RNA binding, signal transduction associated 2	ENSMUST00000185666.2|Khdrbs2|ENSMUSG00000026058.12|KH domain containing, RNA binding, signal transduction associated 2
mm39_v1_chr3_-_116217579_116217681	0.004783985433124964	AGCUGCC	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr18_-_75830595_75830653	0.00472392538212073	AGCUGCC	ENSMUST00000165559.3|Ctif|ENSMUSG00000052928.10|CBP80/20-dependent translation initiation factor
mm39_v1_chr12_+_111005768_111005834	0.0046710545280909095	AGCUGCC	ENSMUST00000084968.14|Rcor1|ENSMUSG00000037896.18|REST corepressor 1
mm39_v1_chr9_-_65734826_65734859	0.004378303337902922	AGCUGCC	ENSMUST00000159109.2|Zfp609|ENSMUSG00000040524.10|zinc finger protein 609
mm39_v1_chr14_+_21549798_21549853	0.004067767419616581	AGCUGCC	ENSMUST00000182855.8|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000182405.9|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B	ENSMUST00000069648.14|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr11_+_100306523_100306592	0.003856838913365529	AGCUGCC	ENSMUST00000001595.10|Fkbp10|ENSMUSG00000001555.11|FK506 binding protein 10	ENSMUST00000107400.3|Fkbp10|ENSMUSG00000001555.11|FK506 binding protein 10
mm39_v1_chr11_+_58221538_58221563	0.0037982129668717194	AGCUGCC	ENSMUST00000116376.9|Sh3bp5l|ENSMUSG00000013646.18|SH3 binding domain protein 5 like
mm39_v1_chr1_-_123973223_123973308	0.0034138828637362327	AGCUGCC	ENSMUST00000112606.8|Dpp10|ENSMUSG00000036815.18|dipeptidylpeptidase 10
mm39_v1_chr2_-_68302612_68302660	0.0033920384462606313	AGCUGCC	ENSMUST00000102715.4|Stk39|ENSMUSG00000027030.16|serine/threonine kinase 39
mm39_v1_chr2_+_145745154_145745214	0.002862965992164473	AGCUGCC	ENSMUST00000110000.8|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit	ENSMUST00000002805.14|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit	ENSMUST00000169732.8|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit	ENSMUST00000134759.3|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit
mm39_v1_chr19_+_36811615_36811698	0.0025971841746702715	AGCUGCC	ENSMUST00000025729.12|Tnks2|ENSMUSG00000024811.12|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm39_v1_chr3_-_89319088_89319202	0.0025273295784143538	AGCUGCC	ENSMUST00000107429.10|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000129308.9|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000107426.8|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000050398.11|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1	ENSMUST00000162701.2|Flad1|ENSMUSG00000042642.14|flavin adenine dinucleotide synthetase 1
mm39_v1_chr11_-_95200382_95200428	0.0024155978858177666	AGCUGCC	ENSMUST00000092766.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7	ENSMUST00000072621.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7
mm39_v1_chr4_+_59189239_59189257	0.0018340465392400326	AGCUGCC	ENSMUST00000030074.8|Ugcg|ENSMUSG00000028381.9|UDP-glucose ceramide glucosyltransferase
mm39_v1_chr2_-_167082505_167082534	0.0016027837427826644	AGCUGCC	ENSMUST00000088041.11|Ptgis|ENSMUSG00000017969.14|prostaglandin I2 (prostacyclin) synthase	ENSMUST00000018113.8|Ptgis|ENSMUSG00000017969.14|prostaglandin I2 (prostacyclin) synthase
mm39_v1_chr15_+_85619958_85620010	0.001561153217721155	AGCUGCC	ENSMUST00000109422.8|Ppara|ENSMUSG00000022383.14|peroxisome proliferator activated receptor alpha
mm39_v1_chr5_-_96309849_96309956	0.001528462923836586	AGCUGCC	ENSMUST00000155901.8|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr15_+_80595486_80595541	0.0015202389726616718	AGCUGCC	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr3_+_97808506_97808567	0.0014119009521195345	AGCUGCC	ENSMUST00000029476.9|Sec22b|ENSMUSG00000027879.10|SEC22 homolog B, vesicle trafficking protein	ENSMUST00000130620.2|Sec22b|ENSMUSG00000027879.10|SEC22 homolog B, vesicle trafficking protein	ENSMUST00000122288.2|Sec22b|ENSMUSG00000027879.10|SEC22 homolog B, vesicle trafficking protein
mm39_v1_chr1_-_64160557_64160650	0.0013154439112577426	AGCUGCC	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chrX_+_150304137_150304203	0.001145726111232336	AGCUGCC	ENSMUST00000112670.8|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000046962.11|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000112668.9|Phf8|ENSMUSG00000041229.16|PHD finger protein 8	ENSMUST00000046950.13|Phf8|ENSMUSG00000041229.16|PHD finger protein 8
mm39_v1_chr2_+_75489596_75489662	0.0009125867851876999	AGCUGCC	ENSMUST00000111964.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000111962.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000111961.8|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000164947.9|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3	ENSMUST00000090792.11|Hnrnpa3|ENSMUSG00000059005.14|heterogeneous nuclear ribonucleoprotein A3
mm39_v1_chr19_-_41836514_41836571	0.0007442139777705116	AGCUGCC	ENSMUST00000059231.4|Frat2|ENSMUSG00000047604.4|frequently rearranged in advanced T cell lymphomas 2
mm39_v1_chrX_-_141089165_141089290	0.0007022922504496122	AGCUGCC	ENSMUST00000134825.3|Kcne1l|ENSMUSG00000090122.4|potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene
mm39_v1_chr12_-_84923252_84923306	0.0003378897651742745	AGCUGCC	ENSMUST00000163189.8|Ltbp2|ENSMUSG00000002020.16|latent transforming growth factor beta binding protein 2	ENSMUST00000110254.9|Ltbp2|ENSMUSG00000002020.16|latent transforming growth factor beta binding protein 2	ENSMUST00000002073.13|Ltbp2|ENSMUSG00000002020.16|latent transforming growth factor beta binding protein 2
mm39_v1_chr2_-_25982160_25982189	0.0002921279336504502	AGCUGCC	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr6_-_71609881_71609974	0.00027014525796596815	AGCUGCC	ENSMUST00000065509.11|Kdm3a|ENSMUSG00000053470.14|lysine (K)-specific demethylase 3A	ENSMUST00000207023.2|Kdm3a|ENSMUSG00000053470.14|lysine (K)-specific demethylase 3A
