mm39_v1_chr4_+_95855442_95855558	0.2340057912525609	AGGUAGU	ENSMUST00000030306.14|Hook1|ENSMUSG00000028572.14|hook microtubule tethering protein 1
mm39_v1_chr4_+_140427799_140427855	0.2091790290893186	AGGUAGU	ENSMUST00000071169.9|Rcc2|ENSMUSG00000040945.14|regulator of chromosome condensation 2
mm39_v1_chrX_+_35592006_35592071	0.18200759211636555	AGGUAGU	ENSMUST00000016383.10|Lonrf3|ENSMUSG00000016239.12|LON peptidase N-terminal domain and ring finger 3
mm39_v1_chr2_+_152907875_152907924	0.18078854983304823	AGGUAGU	ENSMUST00000238488.2|Ccm2l|ENSMUSG00000027474.14|cerebral cavernous malformation 2-like	ENSMUST00000129377.8|Ccm2l|ENSMUSG00000027474.14|cerebral cavernous malformation 2-like	ENSMUST00000109800.2|Ccm2l|ENSMUSG00000027474.14|cerebral cavernous malformation 2-like
mm39_v1_chr9_+_51958453_51958473	0.1722929410769048	AGGUAGU	ENSMUST00000163153.9|Rdx|ENSMUSG00000032050.19|radixin
mm39_v1_chr4_-_133746138_133746152	0.16931005324080964	AGGUAGU	ENSMUST00000051674.3|Lin28a|ENSMUSG00000050966.10|lin-28 homolog A (C. elegans)
mm39_v1_chr12_+_100165694_100165773	0.1606528352409319	AGGUAGU	ENSMUST00000110082.11|Calm1|ENSMUSG00000001175.17|calmodulin 1
mm39_v1_chr6_-_52203146_52203176	0.154888333667577	AGGUAGU	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr9_-_103242096_103242164	0.14837075201415703	AGGUAGU	ENSMUST00000116517.9|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr11_-_76737794_76737871	0.14555210346446734	AGGUAGU	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr7_-_16657825_16658039	0.14464020347406073	AGGUAGU	ENSMUST00000019514.10|Calm3|ENSMUSG00000019370.11|calmodulin 3
mm39_v1_chr4_+_6365650_6365688	0.12750136667953524	AGGUAGU	ENSMUST00000029912.11|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein	ENSMUST00000103008.12|Sdcbp|ENSMUSG00000028249.16|syndecan binding protein
mm39_v1_chr17_-_26314461_26314576	0.1262128249667875	AGGUAGU	ENSMUST00000236128.2|Nme4|ENSMUSG00000024177.10|NME/NM23 nucleoside diphosphate kinase 4	ENSMUST00000025007.7|Nme4|ENSMUSG00000024177.10|NME/NM23 nucleoside diphosphate kinase 4
mm39_v1_chr15_-_76422928_76422973	0.1229442794675003	AGGUAGU	ENSMUST00000023219.9|Fbxl6|ENSMUSG00000022559.9|F-box and leucine-rich repeat protein 6
mm39_v1_chr4_+_54947976_54948054	0.12114483525889476	AGGUAGU	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr11_+_57692399_57692475	0.11281708378298104	AGGUAGU	ENSMUST00000020826.6|Sap30l|ENSMUSG00000020519.6|SAP30-like
mm39_v1_chr5_-_124233812_124233884	0.11248438551493722	AGGUAGU	ENSMUST00000031354.11|Abcb9|ENSMUSG00000029408.14|ATP-binding cassette, sub-family B (MDR/TAP), member 9
mm39_v1_chr14_+_30437556_30437600	0.10584986278064522	AGGUAGU	ENSMUST00000054230.12|Sfmbt1|ENSMUSG00000006527.17|Scm-like with four mbt domains 1
mm39_v1_chr6_-_49191891_49191959	0.10543811123599629	AGGUAGU	ENSMUST00000031838.9|Igf2bp3|ENSMUSG00000029814.11|insulin-like growth factor 2 mRNA binding protein 3
mm39_v1_chr7_+_120442048_120442060	0.10509603417127815	AGGUAGU	ENSMUST00000047875.16|Eef2k|ENSMUSG00000035064.18|eukaryotic elongation factor-2 kinase
mm39_v1_chr1_-_37580084_37580128	0.10232737948316524	AGGUAGU	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr13_-_8921732_8921945	0.09990041675580856	AGGUAGU	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr2_+_36026395_36026441	0.09974277347850315	AGGUAGU	ENSMUST00000028250.9|Mrrf|ENSMUSG00000026887.10|mitochondrial ribosome recycling factor
mm39_v1_chr2_-_152239966_152239997	0.09101548055328652	AGGUAGU	ENSMUST00000063332.9|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12	ENSMUST00000182625.2|Sox12|ENSMUSG00000051817.9|SRY (sex determining region Y)-box 12
mm39_v1_chr3_-_10505113_10505185	0.09093491645380097	AGGUAGU	ENSMUST00000029047.12|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000195822.2|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000099223.11|Snx16|ENSMUSG00000027534.17|sorting nexin 16
mm39_v1_chr8_-_84831391_84831426	0.0908603477076736	AGGUAGU	ENSMUST00000041367.9|Dcaf15|ENSMUSG00000037103.9|DDB1 and CUL4 associated factor 15	ENSMUST00000210279.2|Dcaf15|ENSMUSG00000037103.9|DDB1 and CUL4 associated factor 15
mm39_v1_chr6_-_52181393_52181567	0.08688691992142655	AGGUAGU	ENSMUST00000048794.7|Hoxa5|ENSMUSG00000038253.7|homeobox A5
mm39_v1_chr4_+_28813125_28813139	0.08558685887212152	AGGUAGU	ENSMUST00000080934.11|Epha7|ENSMUSG00000028289.13|Eph receptor A7	ENSMUST00000029964.12|Epha7|ENSMUSG00000028289.13|Eph receptor A7
mm39_v1_chr12_+_108758871_108758914	0.08445904704531135	AGGUAGU	ENSMUST00000021692.9|Yy1|ENSMUSG00000021264.13|YY1 transcription factor
mm39_v1_chr12_-_31401432_31401452	0.08338036275796326	AGGUAGU	ENSMUST00000110857.5|Dld|ENSMUSG00000020664.11|dihydrolipoamide dehydrogenase
mm39_v1_chr8_-_47805383_47805401	0.07410798016537806	AGGUAGU	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr2_+_31135813_31135913	0.07217479068794662	AGGUAGU	ENSMUST00000000199.8|Ncs1|ENSMUSG00000062661.7|neuronal calcium sensor 1
mm39_v1_chr6_+_54572096_54572250	0.06962123506106384	AGGUAGU	ENSMUST00000119706.8|Plekha8|ENSMUSG00000005225.16|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8
mm39_v1_chr13_-_38178059_38178193	0.06438521495934038	AGGUAGU	ENSMUST00000225319.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000225246.2|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha	ENSMUST00000021864.8|Ssr1|ENSMUSG00000021427.11|signal sequence receptor, alpha
mm39_v1_chr1_+_93731662_93731721	0.06411666707906899	AGGUAGU	ENSMUST00000027505.13|Ing5|ENSMUSG00000026283.14|inhibitor of growth family, member 5
mm39_v1_chr17_+_27775613_27775627	0.058634503410305516	AGGUAGU	ENSMUST00000231780.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232253.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232552.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000117600.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr18_+_31742565_31742565	0.05634271324525009	AGGUAGU	ENSMUST00000164667.2|B930094E09Rik|ENSMUSG00000092124.2|RIKEN cDNA B930094E09 gene
mm39_v1_chr18_+_12261798_12261864	0.05490535604834771	AGGUAGU	ENSMUST00000025270.8|Riok3|ENSMUSG00000024404.8|RIO kinase 3
mm39_v1_chr2_+_60040231_60040288	0.05317334578018053	AGGUAGU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr2_+_167922924_167922956	0.052673390321268145	AGGUAGU	ENSMUST00000052125.7|Pard6b|ENSMUSG00000044641.8|par-6 family cell polarity regulator beta
mm39_v1_chr13_-_117162041_117162077	0.05036863043258251	AGGUAGU	ENSMUST00000022239.8|Parp8|ENSMUSG00000021725.10|poly (ADP-ribose) polymerase family, member 8
mm39_v1_chr13_-_9814407_9814464	0.047284128213524505	AGGUAGU	ENSMUST00000146059.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11	ENSMUST00000110637.8|Zmynd11|ENSMUSG00000021156.18|zinc finger, MYND domain containing 11
mm39_v1_chr2_+_112209548_112209598	0.046039762240563345	AGGUAGU	ENSMUST00000028552.4|Katnbl1|ENSMUSG00000027132.4|katanin p80 subunit B like 1
mm39_v1_chr2_+_49341498_49341571	0.04552599773767697	AGGUAGU	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr10_-_43416941_43417015	0.044506906731613206	AGGUAGU	ENSMUST00000147196.3|Mtres1|ENSMUSG00000019797.12|mitochondrial transcription rescue factor 1
mm39_v1_chr14_-_70680882_70680917	0.0444307349958923	AGGUAGU	ENSMUST00000000793.13|Polr3d|ENSMUSG00000000776.14|polymerase (RNA) III (DNA directed) polypeptide D
mm39_v1_chr3_-_104419128_104419250	0.044379253168526804	AGGUAGU	ENSMUST00000199070.5|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2	ENSMUST00000046316.11|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2	ENSMUST00000198332.2|Lrig2|ENSMUSG00000032913.14|leucine-rich repeats and immunoglobulin-like domains 2
mm39_v1_chr2_-_34262012_34262056	0.043462265882461694	AGGUAGU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr8_+_27513819_27513835	0.040340666264684286	AGGUAGU	ENSMUST00000033873.9|Erlin2|ENSMUSG00000031483.9|ER lipid raft associated 2	ENSMUST00000211043.2|Erlin2|ENSMUSG00000031483.9|ER lipid raft associated 2
mm39_v1_chr1_-_168259465_168259474	0.040068348241648184	AGGUAGU	ENSMUST00000176540.8|Pbx1|ENSMUSG00000052534.16|pre B cell leukemia homeobox 1
mm39_v1_chr10_+_111309020_111309108	0.03960667075979907	AGGUAGU	ENSMUST00000065917.16|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000219961.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000217908.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1
mm39_v1_chr3_+_93349637_93349695	0.03880591702220978	AGGUAGU	ENSMUST00000064257.6|Tchh|ENSMUSG00000052415.6|trichohyalin
mm39_v1_chr9_-_107109108_107109117	0.03815145057086005	AGGUAGU	ENSMUST00000044532.11|Dock3|ENSMUSG00000039716.13|dedicator of cyto-kinesis 3
mm39_v1_chr1_+_45350698_45350798	0.037867921110641696	AGGUAGU	ENSMUST00000087883.13|Col3a1|ENSMUSG00000026043.19|collagen, type III, alpha 1
mm39_v1_chr19_-_7360350_7360366	0.03678260056837928	AGGUAGU	ENSMUST00000025924.4|Spindoc|ENSMUSG00000024970.6|spindlin interactor and repressor of chromatin binding
mm39_v1_chr6_-_127128007_127128023	0.03615952548314578	AGGUAGU	ENSMUST00000000188.12|Ccnd2|ENSMUSG00000000184.13|cyclin D2
mm39_v1_chr8_-_111754379_111754423	0.03479346036734783	AGGUAGU	ENSMUST00000040241.15|Ddx19b|ENSMUSG00000033658.17|DEAD box helicase 19b
mm39_v1_chr3_+_68375495_68375542	0.03420350438034103	AGGUAGU	ENSMUST00000182532.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr14_-_49304110_49304132	0.03295036366048406	AGGUAGU	ENSMUST00000162175.9|Exoc5|ENSMUSG00000061244.15|exocyst complex component 5
mm39_v1_chr19_+_40819682_40819757	0.03289572890346755	AGGUAGU	ENSMUST00000025983.13|Ccnj|ENSMUSG00000025010.15|cyclin J	ENSMUST00000119316.2|Ccnj|ENSMUSG00000025010.15|cyclin J
mm39_v1_chr6_-_52194440_52194485	0.032814730699767036	AGGUAGU	ENSMUST00000048715.9|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr6_-_144994534_144994551	0.03126670611570018	AGGUAGU	ENSMUST00000032402.12|Bcat1|ENSMUSG00000030268.18|branched chain aminotransferase 1, cytosolic
mm39_v1_chr2_-_152256947_152256947	0.030242046480105974	AGGUAGU	ENSMUST00000099207.5|Zcchc3|ENSMUSG00000074682.5|zinc finger, CCHC domain containing 3
mm39_v1_chr11_-_106107132_106107189	0.030115362633078305	AGGUAGU	ENSMUST00000002043.10|Ccdc47|ENSMUSG00000078622.9|coiled-coil domain containing 47
mm39_v1_chr12_-_34578842_34578903	0.029649462900828632	AGGUAGU	ENSMUST00000110819.4|Hdac9|ENSMUSG00000004698.12|histone deacetylase 9
mm39_v1_chr4_+_86792633_86792676	0.0272583300792331	AGGUAGU	ENSMUST00000045224.14|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2	ENSMUST00000084433.5|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2
mm39_v1_chrX_+_55655111_55655177	0.027059177993170303	AGGUAGU	ENSMUST00000144068.8|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000077741.12|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6	ENSMUST00000114784.4|Slc9a6|ENSMUSG00000060681.16|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm39_v1_chr13_+_45660905_45660994	0.02662222862391916	AGGUAGU	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr11_-_95896721_95896778	0.02632249432741895	AGGUAGU	ENSMUST00000013559.3|Igf2bp1|ENSMUSG00000013415.10|insulin-like growth factor 2 mRNA binding protein 1
mm39_v1_chr17_+_34148485_34148560	0.0260054498070162	AGGUAGU	ENSMUST00000047503.16|Rgl2|ENSMUSG00000041354.17|ral guanine nucleotide dissociation stimulator-like 2
mm39_v1_chrX_+_92698469_92698587	0.025809090493981737	AGGUAGU	ENSMUST00000113933.9|Pcyt1b|ENSMUSG00000035246.17|phosphate cytidylyltransferase 1, choline, beta isoform
mm39_v1_chr2_+_156038562_156038695	0.025687064035773487	AGGUAGU	ENSMUST00000037401.10|Phf20|ENSMUSG00000038116.17|PHD finger protein 20
mm39_v1_chr17_-_34822649_34822676	0.025151384276842267	AGGUAGU	ENSMUST00000015622.8|Rnf5|ENSMUSG00000015478.14|ring finger protein 5
mm39_v1_chr13_+_35843816_35843853	0.023453577187759186	AGGUAGU	ENSMUST00000075220.14|Cdyl|ENSMUSG00000059288.15|chromodomain protein, Y chromosome-like
mm39_v1_chr6_+_14901343_14901363	0.02322316647814317	AGGUAGU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr6_+_7844759_7844859	0.022791863042208926	AGGUAGU	ENSMUST00000040159.6|C1galt1|ENSMUSG00000042460.6|core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
mm39_v1_chr1_+_52158599_52158660	0.022344961860179133	AGGUAGU	ENSMUST00000186574.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000070968.14|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000191435.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000186857.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1	ENSMUST00000188681.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1
mm39_v1_chr18_-_81029986_81029986	0.021905084684277435	AGGUAGU	ENSMUST00000057950.9|Sall3|ENSMUSG00000024565.11|spalt like transcription factor 3
mm39_v1_chr6_-_115971914_115971971	0.02082222331643857	AGGUAGU	ENSMUST00000015511.15|Plxnd1|ENSMUSG00000030123.16|plexin D1
mm39_v1_chrX_+_152020744_152020838	0.020340026811310107	AGGUAGU	ENSMUST00000112574.9|Klf8|ENSMUSG00000041649.14|Kruppel-like factor 8
mm39_v1_chrX_-_105055486_105055512	0.020266840586477815	AGGUAGU	ENSMUST00000238718.2|Magt1|ENSMUSG00000031232.18|magnesium transporter 1	ENSMUST00000033583.14|Magt1|ENSMUSG00000031232.18|magnesium transporter 1	ENSMUST00000151689.9|Magt1|ENSMUSG00000031232.18|magnesium transporter 1
mm39_v1_chr4_-_82777746_82777917	0.018500403985380953	AGGUAGU	ENSMUST00000156055.2|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21	ENSMUST00000030110.15|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21
mm39_v1_chr1_-_163552693_163552801	0.018388388670410608	AGGUAGU	ENSMUST00000159679.8|Mettl11b|ENSMUSG00000040113.15|methyltransferase like 11B
mm39_v1_chr16_-_87229485_87229503	0.01774921424989165	AGGUAGU	ENSMUST00000039449.9|Ltn1|ENSMUSG00000052299.10|listerin E3 ubiquitin protein ligase 1
mm39_v1_chr2_-_52566583_52566601	0.016002920186963948	AGGUAGU	ENSMUST00000178799.8|Cacnb4|ENSMUSG00000017412.16|calcium channel, voltage-dependent, beta 4 subunit
mm39_v1_chr7_-_141014477_141014517	0.015877872359495813	AGGUAGU	ENSMUST00000106007.10|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000150026.2|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000202840.4|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22	ENSMUST00000133206.9|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr10_+_127575407_127575457	0.015695435644131787	AGGUAGU	ENSMUST00000054287.9|Zbtb39|ENSMUSG00000044617.9|zinc finger and BTB domain containing 39
mm39_v1_chr1_+_20960819_20960841	0.015526184677584676	AGGUAGU	ENSMUST00000189400.7|Paqr8|ENSMUSG00000025931.16|progestin and adipoQ receptor family member VIII
mm39_v1_chrX_-_103244784_103244810	0.01529095872192983	AGGUAGU	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr12_-_27392356_27392573	0.013594950848562996	AGGUAGU	ENSMUST00000079063.7|Sox11|ENSMUSG00000063632.7|SRY (sex determining region Y)-box 11
mm39_v1_chr9_-_117081518_117081557	0.013446128092355113	AGGUAGU	ENSMUST00000111773.10|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000068962.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein	ENSMUST00000044901.14|Rbms3|ENSMUSG00000039607.18|RNA binding motif, single stranded interacting protein
mm39_v1_chr17_-_91400499_91400504	0.012993550851338747	AGGUAGU	ENSMUST00000160844.10|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr12_-_78908409_78908420	0.012732005353545222	AGGUAGU	ENSMUST00000021536.9|Atp6v1d|ENSMUSG00000021114.10|ATPase, H+ transporting, lysosomal V1 subunit D
mm39_v1_chrX_-_110606766_110606834	0.012730200954678314	AGGUAGU	ENSMUST00000113422.9|Hdx|ENSMUSG00000034551.13|highly divergent homeobox	ENSMUST00000038472.7|Hdx|ENSMUSG00000034551.13|highly divergent homeobox
mm39_v1_chr3_-_132940647_132940658	0.011880814473246177	AGGUAGU	ENSMUST00000147041.10|Arhgef38|ENSMUSG00000040969.15|Rho guanine nucleotide exchange factor (GEF) 38	ENSMUST00000161022.9|Arhgef38|ENSMUSG00000040969.15|Rho guanine nucleotide exchange factor (GEF) 38
mm39_v1_chrX_+_139565657_139565821	0.011654735855236527	AGGUAGU	ENSMUST00000112990.8|Mid2|ENSMUSG00000000266.12|midline 2	ENSMUST00000112988.8|Mid2|ENSMUSG00000000266.12|midline 2
mm39_v1_chr8_-_111724409_111724470	0.011618892326612193	AGGUAGU	ENSMUST00000040416.8|Ddx19a|ENSMUSG00000015023.8|DEAD box helicase 19a
mm39_v1_chr14_-_33169099_33169138	0.010366346336974972	AGGUAGU	ENSMUST00000111944.10|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000022504.12|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000111945.9|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8
mm39_v1_chr10_-_123032821_123032868	0.010252436691678775	AGGUAGU	ENSMUST00000219619.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15	ENSMUST00000020334.9|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr15_-_43034205_43034227	0.00993488157945114	AGGUAGU	ENSMUST00000063492.8|Rspo2|ENSMUSG00000051920.8|R-spondin 2	ENSMUST00000226810.2|Rspo2|ENSMUSG00000051920.8|R-spondin 2
mm39_v1_chr8_-_91074971_91075014	0.008577957353556495	AGGUAGU	ENSMUST00000109621.10|Tox3|ENSMUSG00000043668.14|TOX high mobility group box family member 3
mm39_v1_chr8_-_92039850_92039905	0.008571985712078421	AGGUAGU	ENSMUST00000047783.14|Rpgrip1l|ENSMUSG00000033282.15|Rpgrip1-like
mm39_v1_chr12_+_117480099_117480148	0.0079777153942133	AGGUAGU	ENSMUST00000109691.4|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr15_+_55171138_55171158	0.00717096620249779	AGGUAGU	ENSMUST00000023053.12|Col14a1|ENSMUSG00000022371.17|collagen, type XIV, alpha 1	ENSMUST00000110217.10|Col14a1|ENSMUSG00000022371.17|collagen, type XIV, alpha 1
mm39_v1_chr11_+_54194624_54194670	0.006888677026992907	AGGUAGU	ENSMUST00000093106.12|Acsl6|ENSMUSG00000020333.18|acyl-CoA synthetase long-chain family member 6
mm39_v1_chr10_-_61219229_61219309	0.006329832976008631	AGGUAGU	ENSMUST00000020289.10|Pald1|ENSMUSG00000020092.10|phosphatase domain containing, paladin 1
mm39_v1_chr8_+_24159669_24159690	0.005673458906075892	AGGUAGU	ENSMUST00000042352.11|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4	ENSMUST00000207301.2|Zmat4|ENSMUSG00000037492.17|zinc finger, matrin type 4
mm39_v1_chr9_-_123461593_123461630	0.005340425661339717	AGGUAGU	ENSMUST00000026273.11|Slc6a20b|ENSMUSG00000025243.18|solute carrier family 6 (neurotransmitter transporter), member 20B
mm39_v1_chr10_+_58282735_58282750	0.005202896246859634	AGGUAGU	ENSMUST00000003310.7|Ranbp2|ENSMUSG00000003226.8|RAN binding protein 2
mm39_v1_chr4_-_35845204_35845204	0.005160507109131356	AGGUAGU	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr2_+_151923449_151923544	0.005095161023938659	AGGUAGU	ENSMUST00000064061.4|Scrt2|ENSMUSG00000060257.3|scratch family zinc finger 2
mm39_v1_chr1_-_190758321_190758395	0.004947512511991915	AGGUAGU	ENSMUST00000191946.2|Flvcr1|ENSMUSG00000066595.10|feline leukemia virus subgroup C cellular receptor 1	ENSMUST00000085635.6|Flvcr1|ENSMUSG00000066595.10|feline leukemia virus subgroup C cellular receptor 1
mm39_v1_chr19_+_28941292_28941369	0.004831811368568852	AGGUAGU	ENSMUST00000045674.4|Plpp6|ENSMUSG00000040105.4|phospholipid phosphatase 6
mm39_v1_chr18_+_11052458_11052479	0.00476680993375429	AGGUAGU	ENSMUST00000047762.10|Gata6|ENSMUSG00000005836.11|GATA binding protein 6
mm39_v1_chr16_-_4950285_4950347	0.004534046103355933	AGGUAGU	ENSMUST00000035672.5|Ppl|ENSMUSG00000039457.5|periplakin
mm39_v1_chr7_+_15864265_15864290	0.0041352053190146735	AGGUAGU	ENSMUST00000168693.3|Slc8a2|ENSMUSG00000030376.9|solute carrier family 8 (sodium/calcium exchanger), member 2
mm39_v1_chr17_-_81035453_81035522	0.004127873626179503	AGGUAGU	ENSMUST00000234133.2|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000112389.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000025089.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3
mm39_v1_chrX_-_13712746_13712826	0.003979896539897505	AGGUAGU	ENSMUST00000115436.9|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000033321.11|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000115438.10|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm39_v1_chr12_-_104718159_104718211	0.003865792589489125	AGGUAGU	ENSMUST00000041987.7|Dicer1|ENSMUSG00000041415.11|dicer 1, ribonuclease type III
mm39_v1_chrX_-_160942713_160942728	0.003765828641831376	AGGUAGU	ENSMUST00000087085.10|Nhs|ENSMUSG00000059493.14|NHS actin remodeling regulator
mm39_v1_chr3_-_91990439_91990454	0.0035800997859457714	AGGUAGU	ENSMUST00000058150.8|Lor|ENSMUSG00000043165.8|loricrin
mm39_v1_chr5_+_13449276_13449350	0.0033813924508710467	AGGUAGU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chr3_+_137770813_137770839	0.0033718853968449656	AGGUAGU	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr6_-_120470768_120470874	0.0033537972156387668	AGGUAGU	ENSMUST00000178687.2|Tmem121b|ENSMUSG00000094626.2|transmembrane protein 121B
mm39_v1_chr16_-_97412169_97412395	0.0033149426518022055	AGGUAGU	ENSMUST00000232141.2|Tmprss2|ENSMUSG00000000385.9|transmembrane protease, serine 2	ENSMUST00000000395.8|Tmprss2|ENSMUSG00000000385.9|transmembrane protease, serine 2
mm39_v1_chr6_+_4505493_4505493	0.003279957770168862	AGGUAGU	ENSMUST00000031668.10|Col1a2|ENSMUSG00000029661.17|collagen, type I, alpha 2
mm39_v1_chr6_+_4747298_4747354	0.0031598037627768006	AGGUAGU	ENSMUST00000166678.2|Peg10|ENSMUSG00000092035.9|paternally expressed 10	ENSMUST00000176204.8|Peg10|ENSMUSG00000092035.9|paternally expressed 10
mm39_v1_chrX_-_7054952_7054981	0.0030346023193871005	AGGUAGU	ENSMUST00000004428.14|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr15_+_87509413_87509434	0.0024234839641082626	AGGUAGU	ENSMUST00000068088.8|Tafa5|ENSMUSG00000054863.10|TAFA chemokine like family member 5
mm39_v1_chr14_-_124914516_124914539	0.0015312374041235198	AGGUAGU	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chr11_-_57723502_57723644	0.0014990096114840291	AGGUAGU	ENSMUST00000160392.9|Hand1|ENSMUSG00000037335.14|heart and neural crest derivatives expressed 1	ENSMUST00000108845.3|Hand1|ENSMUSG00000037335.14|heart and neural crest derivatives expressed 1
mm39_v1_chr10_+_79518002_79518082	0.0012916515004721774	AGGUAGU	ENSMUST00000020550.13|Cdc34|ENSMUSG00000020307.16|cell division cycle 34
mm39_v1_chr8_+_14145848_14145931	0.0012353319509969525	AGGUAGU	ENSMUST00000152652.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2	ENSMUST00000133298.8|Dlgap2|ENSMUSG00000047495.16|DLG associated protein 2
mm39_v1_chr7_+_90075762_90075785	0.0011955025596540958	AGGUAGU	ENSMUST00000061391.9|Ccdc89|ENSMUSG00000044362.9|coiled-coil domain containing 89
mm39_v1_chr16_-_67417768_67417810	0.0009076735413351967	AGGUAGU	ENSMUST00000114292.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2	ENSMUST00000120898.8|Cadm2|ENSMUSG00000064115.14|cell adhesion molecule 2
mm39_v1_chr10_-_23225781_23225817	0.0007120736334037314	AGGUAGU	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr4_-_139560831_139560846	0.0005804993121816787	AGGUAGU	ENSMUST00000030508.14|Pax7|ENSMUSG00000028736.14|paired box 7
mm39_v1_chr4_+_21931290_21931367	0.0005718450023027884	AGGUAGU	ENSMUST00000029908.8|Faxc|ENSMUSG00000028246.14|failed axon connections homolog
mm39_v1_chr3_+_144998233_144998330	2.7758033878065593e-05	AGGUAGU	ENSMUST00000029848.5|Col24a1|ENSMUSG00000028197.5|collagen, type XXIV, alpha 1	ENSMUST00000139001.2|Col24a1|ENSMUSG00000028197.5|collagen, type XXIV, alpha 1
