mm39_v1_chr8_+_83589979_83590055	0.24390642129707557	AGUGCUU	ENSMUST00000078525.7|Rnf150|ENSMUSG00000047747.11|ring finger protein 150
mm39_v1_chr17_-_32074754_32074780	0.18717148946801518	AGUGCUU	ENSMUST00000024839.6|Sik1|ENSMUSG00000024042.8|salt inducible kinase 1
mm39_v1_chr12_+_38830081_38830116	0.16313489961196556	AGUGCUU	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr5_+_98328723_98328837	0.1552013741885064	AGUGCUU	ENSMUST00000112959.4|Prdm8|ENSMUSG00000035456.10|PR domain containing 8
mm39_v1_chr11_+_68322945_68322996	0.1530498833969903	AGUGCUU	ENSMUST00000021283.8|Pik3r5|ENSMUSG00000020901.14|phosphoinositide-3-kinase regulatory subunit 5
mm39_v1_chr11_+_98727611_98727654	0.15040189755066063	AGUGCUU	ENSMUST00000107479.3|Rapgefl1|ENSMUSG00000038020.6|Rap guanine nucleotide exchange factor (GEF)-like 1
mm39_v1_chr9_-_123680927_123680974	0.1422534667459186	AGUGCUU	ENSMUST00000184082.3|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1	ENSMUST00000167595.9|Fyco1|ENSMUSG00000025241.17|FYVE and coiled-coil domain containing 1
mm39_v1_chr7_-_100581314_100581413	0.13632195567333558	AGUGCUU	ENSMUST00000107032.3|Arhgef17|ENSMUSG00000032875.9|Rho guanine nucleotide exchange factor (GEF) 17
mm39_v1_chr2_-_25873189_25873304	0.1331685254179133	AGUGCUU	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr6_-_149003171_149003184	0.12910289416601137	AGUGCUU	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr12_-_46865709_46865720	0.12437801075533238	AGUGCUU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr7_+_123582021_123582092	0.12134934614071707	AGUGCUU	ENSMUST00000106437.2|Hs3st4|ENSMUSG00000078591.2|heparan sulfate (glucosamine) 3-O-sulfotransferase 4
mm39_v1_chr18_-_16942289_16942384	0.12132868237940135	AGUGCUU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr5_+_23639432_23639478	0.11820404424360409	AGUGCUU	ENSMUST00000094962.9|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E	ENSMUST00000115128.8|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E
mm39_v1_chr9_+_27702243_27702299	0.11681243708826472	AGUGCUU	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chr2_+_179684288_179684355	0.11367539414397716	AGUGCUU	ENSMUST00000041126.9|Ss18l1|ENSMUSG00000039086.10|SS18, nBAF chromatin remodeling complex subunit like 1
mm39_v1_chr1_+_160733942_160734030	0.11166450087542378	AGUGCUU	ENSMUST00000161609.8|Rc3h1|ENSMUSG00000040423.12|RING CCCH (C3H) domains 1
mm39_v1_chr3_-_119576911_119577037	0.10842510101753354	AGUGCUU	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr17_-_16046780_16046853	0.1067370906108047	AGUGCUU	ENSMUST00000232638.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B	ENSMUST00000170578.3|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr12_+_71062733_71062837	0.1060220646323654	AGUGCUU	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr17_+_87061117_87061137	0.10298924423908151	AGUGCUU	ENSMUST00000024954.11|Epas1|ENSMUSG00000024140.11|endothelial PAS domain protein 1
mm39_v1_chr2_-_63928339_63928367	0.10043848058797919	AGUGCUU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr17_-_66384017_66384086	0.09952042903118338	AGUGCUU	ENSMUST00000150766.2|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12	ENSMUST00000038116.13|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12
mm39_v1_chr5_-_21906330_21906402	0.0972629317319017	AGUGCUU	ENSMUST00000115217.8|Napepld|ENSMUSG00000044968.17|N-acyl phosphatidylethanolamine phospholipase D	ENSMUST00000060899.9|Napepld|ENSMUSG00000044968.17|N-acyl phosphatidylethanolamine phospholipase D
mm39_v1_chr3_-_100396635_100396652	0.09670487141603672	AGUGCUU	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr11_+_75422516_75422569	0.09268979009040886	AGUGCUU	ENSMUST00000149727.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000108433.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000042561.14|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000143035.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr3_-_31023547_31023573	0.09247455085747344	AGUGCUU	ENSMUST00000064718.12|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000177992.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000129817.9|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000168645.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000108255.8|Phc3|ENSMUSG00000037652.16|polyhomeotic 3	ENSMUST00000099163.5|Phc3|ENSMUSG00000037652.16|polyhomeotic 3
mm39_v1_chr11_+_74721733_74721746	0.09035056768757313	AGUGCUU	ENSMUST00000000291.9|Mnt|ENSMUSG00000000282.13|max binding protein
mm39_v1_chr11_-_103158190_103158298	0.0894904072369555	AGUGCUU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr14_-_45895599_45895640	0.08233407521965852	AGUGCUU	ENSMUST00000111828.4|Ddhd1|ENSMUSG00000037697.20|DDHD domain containing 1	ENSMUST00000051310.13|Ddhd1|ENSMUSG00000037697.20|DDHD domain containing 1
mm39_v1_chrX_-_20157966_20158078	0.07708209774838468	AGUGCUU	ENSMUST00000115393.3|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7	ENSMUST00000072451.11|Slc9a7|ENSMUSG00000037341.15|solute carrier family 9 (sodium/hydrogen exchanger), member 7
mm39_v1_chr10_+_128295159_128295197	0.07624796082876342	AGUGCUU	ENSMUST00000026433.9|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000099131.11|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	ENSMUST00000105235.10|Smarcc2|ENSMUSG00000025369.16|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
mm39_v1_chr4_+_136013372_136013425	0.07603670575659546	AGUGCUU	ENSMUST00000069195.5|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46	ENSMUST00000130658.2|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr3_+_90161470_90161640	0.07416783376006626	AGUGCUU	ENSMUST00000029545.15|Crtc2|ENSMUSG00000027936.19|CREB regulated transcription coactivator 2
mm39_v1_chr12_-_72455708_72455828	0.07322928201718326	AGUGCUU	ENSMUST00000078505.14|Rtn1|ENSMUSG00000021087.19|reticulon 1
mm39_v1_chr5_+_147367237_147367355	0.07202022821899068	AGUGCUU	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr14_-_21102487_21102592	0.07072514079494141	AGUGCUU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr6_-_83418656_83418666	0.06915794445165853	AGUGCUU	ENSMUST00000089622.11|Tet3|ENSMUSG00000034832.16|tet methylcytosine dioxygenase 3
mm39_v1_chr6_-_24664959_24665039	0.0677161978904842	AGUGCUU	ENSMUST00000041737.8|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor	ENSMUST00000031695.15|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor
mm39_v1_chr1_-_152642032_152642069	0.06382072862693797	AGUGCUU	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr3_+_88857929_88857975	0.06174332853678789	AGUGCUU	ENSMUST00000186583.7|Ash1l|ENSMUSG00000028053.14|ASH1 like histone lysine methyltransferase
mm39_v1_chr3_-_133250129_133250174	0.061418185971334166	AGUGCUU	ENSMUST00000196398.5|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2	ENSMUST00000098603.8|Tet2|ENSMUSG00000040943.13|tet methylcytosine dioxygenase 2
mm39_v1_chr15_+_12117899_12118008	0.061109444571527755	AGUGCUU	ENSMUST00000122941.8|Zfr|ENSMUSG00000022201.17|zinc finger RNA binding protein
mm39_v1_chr18_+_39126178_39126240	0.060969477027911896	AGUGCUU	ENSMUST00000097593.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr4_+_119671688_119671723	0.060511331028563965	AGUGCUU	ENSMUST00000106307.9|Hivep3|ENSMUSG00000028634.18|human immunodeficiency virus type I enhancer binding protein 3
mm39_v1_chr9_+_118435755_118435823	0.05942278006583008	AGUGCUU	ENSMUST00000044165.14|Itga9|ENSMUSG00000039115.14|integrin alpha 9
mm39_v1_chr2_+_113271409_113271424	0.055890193576171705	AGUGCUU	ENSMUST00000081349.9|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chr10_+_93983844_93983885	0.055245118043339925	AGUGCUU	ENSMUST00000105290.9|Nr2c1|ENSMUSG00000005897.15|nuclear receptor subfamily 2, group C, member 1
mm39_v1_chr3_+_54662995_54663069	0.05449180629587806	AGUGCUU	ENSMUST00000029371.3|Smad9|ENSMUSG00000027796.3|SMAD family member 9
mm39_v1_chr6_+_38410848_38410901	0.05444234248090903	AGUGCUU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr16_-_3690243_3690275	0.05424934703591603	AGUGCUU	ENSMUST00000090522.5|Zfp597|ENSMUSG00000039789.8|zinc finger protein 597
mm39_v1_chr9_+_121196034_121196108	0.053962081698212046	AGUGCUU	ENSMUST00000210636.2|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1	ENSMUST00000045903.8|Trak1|ENSMUSG00000032536.13|trafficking protein, kinesin binding 1
mm39_v1_chr2_-_131871725_131871921	0.053750803716067455	AGUGCUU	ENSMUST00000028814.15|Rassf2|ENSMUSG00000027339.16|Ras association (RalGDS/AF-6) domain family member 2
mm39_v1_chr11_+_70453806_70453896	0.05322708684111873	AGUGCUU	ENSMUST00000079244.12|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)	ENSMUST00000102558.11|Mink1|ENSMUSG00000020827.19|misshapen-like kinase 1 (zebrafish)
mm39_v1_chr14_+_28226697_28226720	0.05229697439742425	AGUGCUU	ENSMUST00000063465.12|Wnt5a|ENSMUSG00000021994.16|wingless-type MMTV integration site family, member 5A
mm39_v1_chr11_-_86248395_86248442	0.05227471844527527	AGUGCUU	ENSMUST00000043624.9|Med13|ENSMUSG00000034297.15|mediator complex subunit 13
mm39_v1_chr15_+_80595486_80595541	0.051389909276885554	AGUGCUU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr15_-_103248512_103248527	0.04951823719183561	AGUGCUU	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr7_+_96730763_96730793	0.049159292136243156	AGUGCUU	ENSMUST00000004622.7|Gab2|ENSMUSG00000004508.7|growth factor receptor bound protein 2-associated protein 2
mm39_v1_chr4_+_124696336_124696381	0.046802096685501164	AGUGCUU	ENSMUST00000138807.8|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1	ENSMUST00000030723.3|Mtf1|ENSMUSG00000028890.14|metal response element binding transcription factor 1
mm39_v1_chr6_-_148797648_148797735	0.046021692276101804	AGUGCUU	ENSMUST00000072324.12|Caprin2|ENSMUSG00000030309.17|caprin family member 2	ENSMUST00000111569.9|Caprin2|ENSMUSG00000030309.17|caprin family member 2
mm39_v1_chr2_+_129434834_129434860	0.045853080497499255	AGUGCUU	ENSMUST00000103203.8|Sirpa|ENSMUSG00000037902.19|signal-regulatory protein alpha
mm39_v1_chr15_+_12205095_12205124	0.04575740863543447	AGUGCUU	ENSMUST00000038172.16|Mtmr12|ENSMUSG00000039458.16|myotubularin related protein 12
mm39_v1_chr6_+_31375670_31375795	0.044801133602682605	AGUGCUU	ENSMUST00000026699.15|Mkln1|ENSMUSG00000025609.16|muskelin 1, intracellular mediator containing kelch motifs
mm39_v1_chr9_-_101128976_101129003	0.04474146297683114	AGUGCUU	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr16_-_16377982_16378114	0.04412380096144884	AGUGCUU	ENSMUST00000161861.8|Fgd4|ENSMUSG00000022788.17|FYVE, RhoGEF and PH domain containing 4
mm39_v1_chr13_+_118851214_118851238	0.043192512950506794	AGUGCUU	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr15_-_43733389_43733456	0.04285682269535024	AGUGCUU	ENSMUST00000067469.6|Tmem74|ENSMUSG00000054409.6|transmembrane protein 74
mm39_v1_chr8_+_11808349_11808375	0.04276379477828704	AGUGCUU	ENSMUST00000074856.13|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)	ENSMUST00000098938.9|Arhgef7|ENSMUSG00000031511.17|Rho guanine nucleotide exchange factor (GEF7)
mm39_v1_chr13_-_96678987_96679032	0.041713046176283936	AGUGCUU	ENSMUST00000022172.12|Polk|ENSMUSG00000021668.16|polymerase (DNA directed), kappa
mm39_v1_chr2_-_62242562_62242581	0.04151430094552805	AGUGCUU	ENSMUST00000047812.8|Dpp4|ENSMUSG00000035000.9|dipeptidylpeptidase 4
mm39_v1_chr15_-_50753061_50753118	0.04131563467182051	AGUGCUU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr11_-_101117237_101117289	0.04128142726370411	AGUGCUU	ENSMUST00000100417.3|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107285.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit	ENSMUST00000107284.8|Ezh1|ENSMUSG00000006920.15|enhancer of zeste 1 polycomb repressive complex 2 subunit
mm39_v1_chr7_+_132532841_132532871	0.03891750641970078	AGUGCUU	ENSMUST00000106157.8|Zranb1|ENSMUSG00000030967.16|zinc finger, RAN-binding domain containing 1
mm39_v1_chr2_+_113158053_113158097	0.038675716618444135	AGUGCUU	ENSMUST00000099576.9|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chr8_+_47192767_47192829	0.03860934061501564	AGUGCUU	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr9_+_30941924_30941997	0.03830908694243045	AGUGCUU	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr12_-_79343040_79343086	0.037927939117266496	AGUGCUU	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr12_-_14202041_14202070	0.037360596014184	AGUGCUU	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr6_+_134897364_134897394	0.037231418987262156	AGUGCUU	ENSMUST00000067327.11|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B	ENSMUST00000003115.9|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B
mm39_v1_chr1_-_156767123_156767186	0.036856062312294456	AGUGCUU	ENSMUST00000189316.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000190648.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000172057.8|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2	ENSMUST00000191605.7|Ralgps2|ENSMUSG00000026594.15|Ral GEF with PH domain and SH3 binding motif 2
mm39_v1_chr10_+_69932930_69933066	0.03553459181122469	AGUGCUU	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr2_-_73722874_73722900	0.03536400921381892	AGUGCUU	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr16_-_18052937_18053048	0.03528524162237127	AGUGCUU	ENSMUST00000076957.7|Zdhhc8|ENSMUSG00000060166.7|zinc finger, DHHC domain containing 8
mm39_v1_chr5_+_53713137_53713176	0.033317083129988836	AGUGCUU	ENSMUST00000087360.9|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr8_-_71249630_71249662	0.03285346203356907	AGUGCUU	ENSMUST00000166004.3|Mast3|ENSMUSG00000031833.11|microtubule associated serine/threonine kinase 3
mm39_v1_chr14_+_30201569_30201642	0.032848595077503005	AGUGCUU	ENSMUST00000022535.9|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A	ENSMUST00000223658.2|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A
mm39_v1_chr6_+_114620054_114620066	0.032790119156951326	AGUGCUU	ENSMUST00000032457.17|Atg7|ENSMUSG00000030314.17|autophagy related 7
mm39_v1_chr16_+_42727926_42728047	0.032269960978141214	AGUGCUU	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr7_+_89779564_89779724	0.032170456337213396	AGUGCUU	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr10_+_128212953_128213024	0.03161669871241414	AGUGCUU	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr2_-_166904902_166904967	0.03134105090412402	AGUGCUU	ENSMUST00000048988.14|Znfx1|ENSMUSG00000039501.15|zinc finger, NFX1-type containing 1
mm39_v1_chr19_+_41471067_41471128	0.030998586052815406	AGUGCUU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr15_+_78993111_78993186	0.03040026928551474	AGUGCUU	ENSMUST00000040320.10|Micall1|ENSMUSG00000033039.11|microtubule associated monooxygenase, calponin and LIM domain containing -like 1
mm39_v1_chr8_+_66070661_66070743	0.030068255038912164	AGUGCUU	ENSMUST00000110258.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110256.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1	ENSMUST00000110255.8|Marchf1|ENSMUSG00000036469.17|membrane associated ring-CH-type finger 1
mm39_v1_chr1_+_6284823_6284907	0.029971848190689678	AGUGCUU	ENSMUST00000027040.13|Rb1cc1|ENSMUSG00000025907.15|RB1-inducible coiled-coil 1
mm39_v1_chr13_-_34529157_34529257	0.029796689092850503	AGUGCUU	ENSMUST00000040336.12|Slc22a23|ENSMUSG00000038267.16|solute carrier family 22, member 23
mm39_v1_chr8_+_88999031_88999080	0.029743529037279965	AGUGCUU	ENSMUST00000169037.9|Adcy7|ENSMUSG00000031659.14|adenylate cyclase 7
mm39_v1_chr17_+_26934617_26934698	0.02949178652870694	AGUGCUU	ENSMUST00000062519.14|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000144221.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000142539.8|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor	ENSMUST00000151681.2|Crebrf|ENSMUSG00000048249.15|CREB3 regulatory factor
mm39_v1_chr1_-_88629843_88629943	0.0292110967317106	AGUGCUU	ENSMUST00000159814.2|Arl4c|ENSMUSG00000049866.13|ADP-ribosylation factor-like 4C
mm39_v1_chr5_-_21156766_21156824	0.029185093367015753	AGUGCUU	ENSMUST00000036489.10|Rsbn1l|ENSMUSG00000039968.10|round spermatid basic protein 1-like
mm39_v1_chr2_-_37333109_37333210	0.02834579510494793	AGUGCUU	ENSMUST00000102789.3|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000067043.5|Zbtb26|ENSMUSG00000050714.10|zinc finger and BTB domain containing 26	ENSMUST00000112932.2|Zbtb6|ENSMUSG00000066798.4|zinc finger and BTB domain containing 6
mm39_v1_chr14_-_104081827_104081839	0.028341361750244203	AGUGCUU	ENSMUST00000022718.11|Ednrb|ENSMUSG00000022122.16|endothelin receptor type B
mm39_v1_chr8_-_84874468_84874571	0.027603577313776398	AGUGCUU	ENSMUST00000117424.9|Cc2d1a|ENSMUSG00000036686.17|coiled-coil and C2 domain containing 1A	ENSMUST00000040383.9|Cc2d1a|ENSMUSG00000036686.17|coiled-coil and C2 domain containing 1A
mm39_v1_chr5_+_97145533_97145625	0.02725933038735085	AGUGCUU	ENSMUST00000112974.6|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase	ENSMUST00000035635.10|Bmp2k|ENSMUSG00000034663.14|BMP2 inducible kinase
mm39_v1_chrX_-_73129195_73129296	0.02715660047489942	AGUGCUU	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr12_-_67269323_67269354	0.027123989374367836	AGUGCUU	ENSMUST00000037181.16|Mdga2|ENSMUSG00000034912.19|MAM domain containing glycosylphosphatidylinositol anchor 2
mm39_v1_chr9_-_44792575_44792621	0.026977030189075567	AGUGCUU	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr11_+_115921129_115921215	0.02566920088081546	AGUGCUU	ENSMUST00000021116.12|Unk|ENSMUSG00000020770.14|unkempt family zinc finger	ENSMUST00000106452.2|Unk|ENSMUSG00000020770.14|unkempt family zinc finger
mm39_v1_chr9_+_72439496_72439553	0.025662588432436816	AGUGCUU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr4_+_53631460_53631574	0.02554221705334389	AGUGCUU	ENSMUST00000132151.8|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000159415.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like	ENSMUST00000163067.9|Fsd1l|ENSMUSG00000054752.17|fibronectin type III and SPRY domain containing 1-like
mm39_v1_chr7_+_122723365_122723446	0.0252882519618435	AGUGCUU	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr16_+_13176238_13176334	0.025247762307718063	AGUGCUU	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr14_+_32321341_32321498	0.025220418996204686	AGUGCUU	ENSMUST00000187377.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000189022.8|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000186452.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr2_-_63014622_63014681	0.02506795658040371	AGUGCUU	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr11_-_60243695_60243731	0.024861584274832316	AGUGCUU	ENSMUST00000095254.12|Tom1l2|ENSMUSG00000000538.19|target of myb1-like 2 (chicken)	ENSMUST00000102683.11|Tom1l2|ENSMUSG00000000538.19|target of myb1-like 2 (chicken)	ENSMUST00000093048.13|Tom1l2|ENSMUSG00000000538.19|target of myb1-like 2 (chicken)	ENSMUST00000093046.13|Tom1l2|ENSMUSG00000000538.19|target of myb1-like 2 (chicken)	ENSMUST00000064019.15|Tom1l2|ENSMUSG00000000538.19|target of myb1-like 2 (chicken)	ENSMUST00000102682.5|Tom1l2|ENSMUSG00000000538.19|target of myb1-like 2 (chicken)
mm39_v1_chr2_-_19002932_19002971	0.024594256547399905	AGUGCUU	ENSMUST00000006912.12|Pip4k2a|ENSMUSG00000026737.13|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm39_v1_chr5_-_136596299_136596390	0.02456335892798172	AGUGCUU	ENSMUST00000004097.16|Cux1|ENSMUSG00000029705.18|cut-like homeobox 1
mm39_v1_chr12_+_16944896_16944904	0.023671244730051666	AGUGCUU	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr4_-_53159885_53159900	0.023117720159407513	AGUGCUU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr11_+_29323618_29323777	0.022103751805261862	AGUGCUU	ENSMUST00000040182.13|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A	ENSMUST00000109477.2|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A
mm39_v1_chr5_-_76452365_76452398	0.021544459233436314	AGUGCUU	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr19_-_24454720_24454854	0.021022102860455867	AGUGCUU	ENSMUST00000099556.2|Fam122a|ENSMUSG00000074922.2|family with sequence similarity 122, member A
mm39_v1_chr14_+_67470884_67471035	0.02100670137203864	AGUGCUU	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr18_-_10182007_10182092	0.020614069054971904	AGUGCUU	ENSMUST00000067947.7|Rock1|ENSMUSG00000024290.10|Rho-associated coiled-coil containing protein kinase 1
mm39_v1_chr2_-_35994072_35994085	0.0201782771752566	AGUGCUU	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr6_+_92068361_92068371	0.020143642468529274	AGUGCUU	ENSMUST00000113460.8|Nr2c2|ENSMUSG00000005893.15|nuclear receptor subfamily 2, group C, member 2
mm39_v1_chr2_+_153133326_153133378	0.019796540234698713	AGUGCUU	ENSMUST00000028977.7|Kif3b|ENSMUSG00000027475.10|kinesin family member 3B
mm39_v1_chr6_-_53045546_53045640	0.018562656651738105	AGUGCUU	ENSMUST00000074541.6|Jazf1|ENSMUSG00000063568.12|JAZF zinc finger 1
mm39_v1_chr12_-_69245191_69245203	0.018550066966542433	AGUGCUU	ENSMUST00000021356.6|Dnaaf2|ENSMUSG00000020973.8|dynein, axonemal assembly factor 2
mm39_v1_chr13_+_112600604_112600696	0.018547174400422976	AGUGCUU	ENSMUST00000183663.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000184311.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer	ENSMUST00000183886.8|Il6st|ENSMUSG00000021756.13|interleukin 6 signal transducer
mm39_v1_chr19_+_3817396_3817523	0.018337366474989156	AGUGCUU	ENSMUST00000052699.13|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113974.11|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113972.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113973.8|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113977.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B	ENSMUST00000113968.9|Kmt5b|ENSMUSG00000045098.20|lysine methyltransferase 5B
mm39_v1_chr2_+_173501553_173501664	0.0180641504365696	AGUGCUU	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr18_+_32296126_32296249	0.018004456108863837	AGUGCUU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr4_+_107659474_107659637	0.017788584081389672	AGUGCUU	ENSMUST00000106733.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238651.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000030356.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238421.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000126573.8|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238569.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000106732.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm39_v1_chr1_+_130645056_130645070	0.017549053259221577	AGUGCUU	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr3_+_88439616_88439703	0.017233543667434223	AGUGCUU	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr7_+_100355798_100355909	0.017149573585370666	AGUGCUU	ENSMUST00000107042.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000207564.2|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A	ENSMUST00000049053.9|Fam168a|ENSMUSG00000029461.18|family with sequence similarity 168, member A
mm39_v1_chr5_+_8472831_8472906	0.01698060323047819	AGUGCUU	ENSMUST00000066921.10|Slc25a40|ENSMUSG00000054099.12|solute carrier family 25, member 40	ENSMUST00000170496.6|Slc25a40|ENSMUSG00000054099.12|solute carrier family 25, member 40
mm39_v1_chr1_+_180720666_180720679	0.01691073440200269	AGUGCUU	ENSMUST00000085797.6|Lefty2|ENSMUSG00000066652.6|left-right determination factor 2
mm39_v1_chr13_+_14238361_14238407	0.016579319961343673	AGUGCUU	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr17_+_34250757_34250826	0.016054167440856477	AGUGCUU	ENSMUST00000044858.16|Rxrb|ENSMUSG00000039656.18|retinoid X receptor beta	ENSMUST00000174299.9|Rxrb|ENSMUSG00000039656.18|retinoid X receptor beta
mm39_v1_chr17_+_25407352_25407392	0.01597064772874041	AGUGCUU	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr1_-_151965876_151965918	0.015072463047380417	AGUGCUU	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr1_+_23801007_23801080	0.01467402071783707	AGUGCUU	ENSMUST00000063663.6|B3gat2|ENSMUSG00000026156.9|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm39_v1_chr6_-_37419030_37419117	0.014372195416349607	AGUGCUU	ENSMUST00000041093.6|Creb3l2|ENSMUSG00000038648.6|cAMP responsive element binding protein 3-like 2
mm39_v1_chr16_+_55794244_55794255	0.01417368876276722	AGUGCUU	ENSMUST00000050248.9|Zbtb11|ENSMUSG00000022601.12|zinc finger and BTB domain containing 11
mm39_v1_chr4_-_43562397_43562438	0.013835780441135237	AGUGCUU	ENSMUST00000030187.14|Tln1|ENSMUSG00000028465.17|talin 1
mm39_v1_chr19_-_60569323_60569468	0.013751566282845998	AGUGCUU	ENSMUST00000111460.5|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000166712.9|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1	ENSMUST00000081790.15|Cacul1|ENSMUSG00000033417.17|CDK2 associated, cullin domain 1
mm39_v1_chr7_-_35502392_35502433	0.013348671134221649	AGUGCUU	ENSMUST00000187282.3|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000205670.2|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000061586.11|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507
mm39_v1_chr1_-_64160557_64160650	0.013131646611228138	AGUGCUU	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr12_-_98703664_98703774	0.012477276062247508	AGUGCUU	ENSMUST00000170188.8|Ptpn21|ENSMUSG00000021009.16|protein tyrosine phosphatase, non-receptor type 21
mm39_v1_chr1_+_139349912_139350120	0.01231379766159119	AGUGCUU	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr13_+_55357585_55357602	0.01201468232742057	AGUGCUU	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr5_-_143717970_143718072	0.011647801877283506	AGUGCUU	ENSMUST00000053287.6|Usp42|ENSMUSG00000051306.8|ubiquitin specific peptidase 42
mm39_v1_chr15_-_57998443_57998491	0.011575709299996547	AGUGCUU	ENSMUST00000038194.5|Atad2|ENSMUSG00000022360.9|ATPase family, AAA domain containing 2
mm39_v1_chr9_+_74769166_74769203	0.011568318252234871	AGUGCUU	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr4_+_62883796_62883854	0.011287041800879723	AGUGCUU	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr1_-_190711151_190711199	0.011088340026927473	AGUGCUU	ENSMUST00000047409.9|Vash2|ENSMUSG00000037568.13|vasohibin 2
mm39_v1_chr15_-_93173032_93173060	0.011023947762348784	AGUGCUU	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr2_-_121101822_121101888	0.011020184863634245	AGUGCUU	ENSMUST00000110647.8|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1	ENSMUST00000110648.8|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1
mm39_v1_chr19_+_43678109_43678133	0.010858753626591841	AGUGCUU	ENSMUST00000081079.6|Entpd7|ENSMUSG00000025192.14|ectonucleoside triphosphate diphosphohydrolase 7
mm39_v1_chr3_+_129326004_129326089	0.01049063461054528	AGUGCUU	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr2_+_68691778_68691854	0.00997320531794959	AGUGCUU	ENSMUST00000028426.9|Cers6|ENSMUSG00000027035.11|ceramide synthase 6
mm39_v1_chr15_+_37233280_37233318	0.009751933930421256	AGUGCUU	ENSMUST00000161405.8|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000022895.15|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000161532.2|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2
mm39_v1_chr4_+_108857803_108857903	0.009377520463350756	AGUGCUU	ENSMUST00000065977.11|Nrd1|ENSMUSG00000053510.13|nardilysin, N-arginine dibasic convertase, NRD convertase 1	ENSMUST00000102736.9|Nrd1|ENSMUSG00000053510.13|nardilysin, N-arginine dibasic convertase, NRD convertase 1
mm39_v1_chr15_+_6737853_6737883	0.009184836601335645	AGUGCUU	ENSMUST00000061656.8|Rictor|ENSMUSG00000050310.10|RPTOR independent companion of MTOR, complex 2
mm39_v1_chr11_+_70735572_70735642	0.009171152608996093	AGUGCUU	ENSMUST00000076270.13|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000179114.8|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000100928.11|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1
mm39_v1_chr16_-_32688640_32688741	0.008969478225347032	AGUGCUU	ENSMUST00000089684.10|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000040986.15|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	ENSMUST00000115105.9|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
mm39_v1_chr2_-_121304521_121304548	0.008881653514616217	AGUGCUU	ENSMUST00000056732.4|Mfap1b|ENSMUSG00000048222.4|microfibrillar-associated protein 1B
mm39_v1_chr5_-_147662798_147662833	0.00886108877588277	AGUGCUU	ENSMUST00000110529.6|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1	ENSMUST00000031653.12|Flt1|ENSMUSG00000029648.14|FMS-like tyrosine kinase 1
mm39_v1_chr3_+_16237371_16237447	0.00873755154973299	AGUGCUU	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr11_-_72302520_72302573	0.008737290523481768	AGUGCUU	ENSMUST00000108500.8|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2	ENSMUST00000050226.7|Smtnl2|ENSMUSG00000045667.15|smoothelin-like 2
mm39_v1_chr7_+_116980173_116980249	0.008555546958529375	AGUGCUU	ENSMUST00000032892.7|Xylt1|ENSMUSG00000030657.12|xylosyltransferase 1
mm39_v1_chr10_+_70080913_70080970	0.008092532401354761	AGUGCUU	ENSMUST00000046807.7|Slc16a9|ENSMUSG00000037762.7|solute carrier family 16 (monocarboxylic acid transporters), member 9
mm39_v1_chr12_+_105750952_105751131	0.007712562597400483	AGUGCUU	ENSMUST00000109901.9|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000168186.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000163473.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170540.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000166735.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170002.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha
mm39_v1_chr9_-_114393406_114393437	0.007686925441144655	AGUGCUU	ENSMUST00000111816.3|Trim71|ENSMUSG00000079259.3|tripartite motif-containing 71
mm39_v1_chr14_+_34395845_34395890	0.007659454028878106	AGUGCUU	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr8_-_121316043_121316043	0.007467497607564747	AGUGCUU	ENSMUST00000034278.6|Gins2|ENSMUSG00000031821.12|GINS complex subunit 2 (Psf2 homolog)
mm39_v1_chr3_-_53370621_53370753	0.0074374178331320295	AGUGCUU	ENSMUST00000056749.14|Nhlrc3|ENSMUSG00000042997.14|NHL repeat containing 3
mm39_v1_chr10_-_116417333_116417416	0.006636696618379232	AGUGCUU	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr10_+_40225272_40225385	0.006163541198916998	AGUGCUU	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr1_+_138891447_138891539	0.0061481538695423365	AGUGCUU	ENSMUST00000168527.8|Dennd1b|ENSMUSG00000056268.16|DENN/MADD domain containing 1B
mm39_v1_chr5_-_135573962_135573982	0.006086825463134881	AGUGCUU	ENSMUST00000060311.12|Hip1|ENSMUSG00000039959.14|huntingtin interacting protein 1
mm39_v1_chr7_-_120673761_120673795	0.005541808948036301	AGUGCUU	ENSMUST00000047194.4|Igsf6|ENSMUSG00000035004.4|immunoglobulin superfamily, member 6
mm39_v1_chr5_+_88868714_88868734	0.0055118522093739845	AGUGCUU	ENSMUST00000113229.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B	ENSMUST00000006424.8|Mob1b|ENSMUSG00000006262.16|MOB kinase activator 1B
mm39_v1_chr19_-_10217968_10218125	0.004326743182034801	AGUGCUU	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr5_-_67585137_67585157	0.0036938413160407476	AGUGCUU	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr2_+_37342248_37342297	0.003566683830961244	AGUGCUU	ENSMUST00000148470.8|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000066055.10|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1	ENSMUST00000112920.2|Rabgap1|ENSMUSG00000035437.16|RAB GTPase activating protein 1
mm39_v1_chr2_-_150531280_150531280	0.0035571705188346616	AGUGCUU	ENSMUST00000046095.10|Vsx1|ENSMUSG00000033080.10|visual system homeobox 1
mm39_v1_chr11_+_76563281_76563296	0.0035340881688778283	AGUGCUU	ENSMUST00000056184.2|Bhlha9|ENSMUSG00000044243.4|basic helix-loop-helix family, member a9
mm39_v1_chr2_+_73102269_73102283	0.0034698404654948632	AGUGCUU	ENSMUST00000090813.6|Sp9|ENSMUSG00000068859.6|trans-acting transcription factor 9
mm39_v1_chr7_+_109617456_109617481	0.0032616330217786257	AGUGCUU	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr13_-_64300964_64301043	0.003208117092793939	AGUGCUU	ENSMUST00000059817.12|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367	ENSMUST00000117241.2|Zfp367|ENSMUSG00000044934.14|zinc finger protein 367
mm39_v1_chr18_+_70701260_70701469	0.0031279734114012803	AGUGCUU	ENSMUST00000074058.11|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2	ENSMUST00000114946.4|Mbd2|ENSMUSG00000024513.17|methyl-CpG binding domain protein 2
mm39_v1_chr4_+_106173384_106173439	0.003009049827218506	AGUGCUU	ENSMUST00000165709.8|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24	ENSMUST00000094933.5|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24
mm39_v1_chr9_-_42383494_42383561	0.0026804257457339726	AGUGCUU	ENSMUST00000128959.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000066148.12|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like	ENSMUST00000138506.8|Tbcel|ENSMUSG00000037287.16|tubulin folding cofactor E-like
mm39_v1_chr13_+_83652352_83652374	0.002612012611626599	AGUGCUU	ENSMUST00000198916.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000200123.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000005722.14|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C	ENSMUST00000163888.8|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr5_+_128677863_128677912	0.002573428573279292	AGUGCUU	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr10_+_93476903_93476918	0.002284981784189137	AGUGCUU	ENSMUST00000020204.5|Ntn4|ENSMUSG00000020019.5|netrin 4
mm39_v1_chr2_-_104647041_104647138	0.0017770084554047183	AGUGCUU	ENSMUST00000117237.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1	ENSMUST00000231375.2|Qser1|ENSMUSG00000074994.7|glutamine and serine rich 1
mm39_v1_chr2_+_152135748_152135781	0.0012242085742961918	AGUGCUU	ENSMUST00000028963.14|Tbc1d20|ENSMUSG00000027465.14|TBC1 domain family, member 20	ENSMUST00000144252.8|Tbc1d20|ENSMUSG00000027465.14|TBC1 domain family, member 20
mm39_v1_chr7_-_109559671_109559702	0.0011920931632557173	AGUGCUU	ENSMUST00000080437.13|Dennd5a|ENSMUSG00000035901.15|DENN/MADD domain containing 5A
mm39_v1_chr19_-_47680528_47680535	0.001031880059422231	AGUGCUU	ENSMUST00000026045.14|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1	ENSMUST00000086923.6|Col17a1|ENSMUSG00000025064.16|collagen, type XVII, alpha 1
mm39_v1_chr1_+_133291302_133291320	0.0006347458178860959	AGUGCUU	ENSMUST00000135222.9|Etnk2|ENSMUSG00000070644.14|ethanolamine kinase 2
mm39_v1_chr1_-_119765343_119765403	0.0005587823615650218	AGUGCUU	ENSMUST00000064091.12|Ptpn4|ENSMUSG00000026384.14|protein tyrosine phosphatase, non-receptor type 4
mm39_v1_chr16_-_31094095_31094109	0.0004699222547767356	AGUGCUU	ENSMUST00000060188.14|Ppp1r2|ENSMUSG00000047714.15|protein phosphatase 1, regulatory inhibitor subunit 2
mm39_v1_chr17_+_29312737_29312755	0.00011874005654642468	AGUGCUU	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
