mm39_v1_chr3_+_151143524_151143551	0.10424238138781858	AGUGGUU	ENSMUST00000046977.12|Adgrl4|ENSMUSG00000039167.13|adhesion G protein-coupled receptor L4
mm39_v1_chr19_+_23118545_23118627	0.07963853350653935	AGUGGUU	ENSMUST00000036884.3|Klf9|ENSMUSG00000033863.3|Kruppel-like factor 9
mm39_v1_chr13_-_104057016_104057075	0.07954036139795762	AGUGGUU	ENSMUST00000022222.12|Erbin|ENSMUSG00000021709.15|Erbb2 interacting protein
mm39_v1_chr12_-_98867431_98867534	0.0762954085716639	AGUGGUU	ENSMUST00000065716.8|Eml5|ENSMUSG00000051166.11|echinoderm microtubule associated protein like 5
mm39_v1_chr2_+_32425327_32425371	0.061595694101535085	AGUGGUU	ENSMUST00000133512.2|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A	ENSMUST00000048375.6|Fam102a|ENSMUSG00000039157.13|family with sequence similarity 102, member A
mm39_v1_chr4_-_148021217_148021226	0.058136250614702956	AGUGGUU	ENSMUST00000019199.14|Plod1|ENSMUSG00000019055.16|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
mm39_v1_chr7_-_110682204_110682244	0.055780090245638334	AGUGGUU	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr2_+_91287846_91287894	0.04807614815193642	AGUGGUU	ENSMUST00000028689.4|Lrp4|ENSMUSG00000027253.16|low density lipoprotein receptor-related protein 4
mm39_v1_chr10_-_117681864_117681940	0.047383863294913314	AGUGGUU	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr12_+_104998895_104998964	0.04732964821883184	AGUGGUU	ENSMUST00000223244.2|Glrx5|ENSMUSG00000021102.5|glutaredoxin 5	ENSMUST00000021522.5|Glrx5|ENSMUSG00000021102.5|glutaredoxin 5
mm39_v1_chr14_+_48683797_48683886	0.04486408959986818	AGUGGUU	ENSMUST00000111735.10|Tmem260|ENSMUSG00000036339.19|transmembrane protein 260
mm39_v1_chr12_-_21467437_21467638	0.044068018622201166	AGUGGUU	ENSMUST00000103002.8|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000155480.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	ENSMUST00000135088.9|Ywhaq|ENSMUSG00000076432.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta
mm39_v1_chr7_+_26958150_26958240	0.040918028477650525	AGUGGUU	ENSMUST00000079258.7|Numbl|ENSMUSG00000063160.13|numb-like
mm39_v1_chr11_+_49141339_49141405	0.03571341298468145	AGUGGUU	ENSMUST00000101293.11|Mgat1|ENSMUSG00000020346.17|mannoside acetylglucosaminyltransferase 1
mm39_v1_chr10_+_67373691_67373760	0.034099477857230165	AGUGGUU	ENSMUST00000048289.14|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000130933.2|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000105438.9|Egr2|ENSMUSG00000037868.16|early growth response 2	ENSMUST00000146986.2|Egr2|ENSMUSG00000037868.16|early growth response 2
mm39_v1_chr4_+_47353217_47353226	0.03366395962514934	AGUGGUU	ENSMUST00000007757.15|Tgfbr1|ENSMUSG00000007613.16|transforming growth factor, beta receptor I
mm39_v1_chr10_+_62756409_62756425	0.03344867750690539	AGUGGUU	ENSMUST00000044977.10|Slc25a16|ENSMUSG00000071253.9|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm39_v1_chr1_+_131838294_131838310	0.03280713719179995	AGUGGUU	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr6_-_28261881_28261942	0.032604302118381875	AGUGGUU	ENSMUST00000115320.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000123098.8|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000115321.9|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800	ENSMUST00000155494.2|Zfp800|ENSMUSG00000039841.15|zinc finger protein 800
mm39_v1_chr19_-_6065872_6065927	0.03122788957742173	AGUGGUU	ENSMUST00000164843.10|Capn1|ENSMUSG00000024942.20|calpain 1
mm39_v1_chr11_-_62539284_62539349	0.030617825700005694	AGUGGUU	ENSMUST00000057194.9|Lrrc75a|ENSMUSG00000046417.15|leucine rich repeat containing 75A
mm39_v1_chr11_-_48717482_48717574	0.03041332861842704	AGUGGUU	ENSMUST00000104959.2|Gm12184|ENSMUSG00000078154.4|predicted gene 12184
mm39_v1_chr9_+_7764042_7764179	0.029444415879696022	AGUGGUU	ENSMUST00000052865.16|Tmem123|ENSMUSG00000050912.16|transmembrane protein 123
mm39_v1_chr7_+_67602565_67602576	0.029200480021885127	AGUGGUU	ENSMUST00000005671.10|Igf1r|ENSMUSG00000005533.11|insulin-like growth factor I receptor
mm39_v1_chr14_-_6104568_6104592	0.028859569887321464	AGUGGUU	ENSMUST00000017629.12|Top2b|ENSMUSG00000017485.12|topoisomerase (DNA) II beta
mm39_v1_chr3_-_116456292_116456326	0.028402960956758674	AGUGGUU	ENSMUST00000029570.9|Mfsd14a|ENSMUSG00000089911.5|major facilitator superfamily domain containing 14A
mm39_v1_chr9_-_85209162_85209183	0.027968130246616693	AGUGGUU	ENSMUST00000034802.15|Tent5a|ENSMUSG00000032265.15|terminal nucleotidyltransferase 5A
mm39_v1_chr9_+_70586232_70586292	0.02661910443161931	AGUGGUU	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr3_-_144275897_144275989	0.025934417918683367	AGUGGUU	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr4_-_129229159_129229170	0.025768851538787583	AGUGGUU	ENSMUST00000102598.4|Rbbp4|ENSMUSG00000057236.11|retinoblastoma binding protein 4, chromatin remodeling factor
mm39_v1_chr4_-_43584386_43584494	0.024359098956548485	AGUGGUU	ENSMUST00000107884.3|Msmp|ENSMUSG00000078719.3|microseminoprotein, prostate associated
mm39_v1_chr11_-_78642480_78642555	0.02312829024058739	AGUGGUU	ENSMUST00000059468.6|Ccnq|ENSMUSG00000049489.6|cyclin Q
mm39_v1_chr11_+_87959067_87959115	0.022290499643856303	AGUGGUU	ENSMUST00000018521.11|Vezf1|ENSMUSG00000018377.11|vascular endothelial zinc finger 1
mm39_v1_chr5_-_143513732_143513791	0.022161124905630634	AGUGGUU	ENSMUST00000100489.4|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1	ENSMUST00000080537.14|Rac1|ENSMUSG00000001847.15|Rac family small GTPase 1
mm39_v1_chr1_-_80318197_80318229	0.021941229558138632	AGUGGUU	ENSMUST00000163119.8|Cul3|ENSMUSG00000004364.15|cullin 3
mm39_v1_chr7_+_45084257_45084295	0.021124871500253595	AGUGGUU	ENSMUST00000003964.17|Gys1|ENSMUSG00000003865.17|glycogen synthase 1, muscle
mm39_v1_chr5_+_20112500_20112549	0.020424716531699885	AGUGGUU	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr2_+_112209548_112209598	0.019507073215653717	AGUGGUU	ENSMUST00000028552.4|Katnbl1|ENSMUSG00000027132.4|katanin p80 subunit B like 1
mm39_v1_chr7_-_24919247_24919309	0.019358535017887424	AGUGGUU	ENSMUST00000058702.7|Dedd2|ENSMUSG00000054499.10|death effector domain-containing DNA binding protein 2
mm39_v1_chrX_+_158038778_158038894	0.018963367773830286	AGUGGUU	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr1_+_93406686_93406783	0.01886946566702482	AGUGGUU	ENSMUST00000027495.15|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000136182.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000131175.9|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000179353.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000172165.8|Septin2|ENSMUSG00000116048.2|septin 2	ENSMUST00000153826.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000129211.8|Septin2|ENSMUSG00000026276.21|septin 2	ENSMUST00000168776.8|Septin2|ENSMUSG00000116048.2|septin 2
mm39_v1_chr5_+_122296322_122296419	0.018695086326028135	AGUGGUU	ENSMUST00000102528.11|Ppp1cc|ENSMUSG00000004455.17|protein phosphatase 1 catalytic subunit gamma	ENSMUST00000086294.11|Ppp1cc|ENSMUSG00000004455.17|protein phosphatase 1 catalytic subunit gamma
mm39_v1_chr18_+_35695199_35695313	0.016696161805676096	AGUGGUU	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr4_-_134014525_134014575	0.016353722365370065	AGUGGUU	ENSMUST00000145006.8|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105877.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000127857.2|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like	ENSMUST00000105876.9|Pdik1l|ENSMUSG00000050890.16|PDLIM1 interacting kinase 1 like
mm39_v1_chr6_+_14901343_14901363	0.01620036247078141	AGUGGUU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr9_+_83716736_83716819	0.015777352474231808	AGUGGUU	ENSMUST00000185913.7|Ttk|ENSMUSG00000038379.16|Ttk protein kinase	ENSMUST00000070326.14|Ttk|ENSMUSG00000038379.16|Ttk protein kinase	ENSMUST00000191484.2|Ttk|ENSMUSG00000038379.16|Ttk protein kinase
mm39_v1_chr8_-_87472562_87472682	0.015598946174341025	AGUGGUU	ENSMUST00000045296.6|Siah1a|ENSMUSG00000036840.6|siah E3 ubiquitin protein ligase 1A
mm39_v1_chr15_-_36283244_36283297	0.015465142886094475	AGUGGUU	ENSMUST00000228358.2|Rnf19a|ENSMUSG00000022280.10|ring finger protein 19A	ENSMUST00000022890.10|Rnf19a|ENSMUSG00000022280.10|ring finger protein 19A
mm39_v1_chr2_-_59955995_59956119	0.015270831157710874	AGUGGUU	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr10_+_42554888_42554945	0.014498719645600565	AGUGGUU	ENSMUST00000040718.6|Ostm1|ENSMUSG00000038280.13|osteopetrosis associated transmembrane protein 1
mm39_v1_chr16_-_75563645_75563709	0.014314899800483281	AGUGGUU	ENSMUST00000114244.2|Hspa13|ENSMUSG00000032932.16|heat shock protein 70 family, member 13	ENSMUST00000046283.16|Hspa13|ENSMUSG00000032932.16|heat shock protein 70 family, member 13
mm39_v1_chr17_-_25493273_25493291	0.01406406074742713	AGUGGUU	ENSMUST00000172587.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000049911.16|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I	ENSMUST00000173713.8|Ube2i|ENSMUSG00000015120.16|ubiquitin-conjugating enzyme E2I
mm39_v1_chr9_-_108141105_108141161	0.013980954305058328	AGUGGUU	ENSMUST00000166905.8|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000191899.6|Dag1|ENSMUSG00000039952.16|dystroglycan 1
mm39_v1_chr15_-_51855073_51855159	0.013917630065255527	AGUGGUU	ENSMUST00000022927.11|Rad21|ENSMUSG00000022314.11|RAD21 cohesin complex component
mm39_v1_chr3_+_146205562_146205645	0.013775720660058971	AGUGGUU	ENSMUST00000090031.12|Gng5|ENSMUSG00000068523.13|guanine nucleotide binding protein (G protein), gamma 5	ENSMUST00000118280.2|Gng5|ENSMUSG00000068523.13|guanine nucleotide binding protein (G protein), gamma 5
mm39_v1_chr13_-_100969878_100969978	0.013430996241918116	AGUGGUU	ENSMUST00000067246.6|Slc30a5|ENSMUSG00000021629.11|solute carrier family 30 (zinc transporter), member 5
mm39_v1_chr14_-_31923803_31923867	0.013347296736897565	AGUGGUU	ENSMUST00000226683.2|Timm23|ENSMUSG00000013701.14|translocase of inner mitochondrial membrane 23	ENSMUST00000170331.8|Timm23|ENSMUSG00000013701.14|translocase of inner mitochondrial membrane 23	ENSMUST00000013845.13|Timm23|ENSMUSG00000013701.14|translocase of inner mitochondrial membrane 23
mm39_v1_chr2_+_152873772_152873939	0.013000798850476123	AGUGGUU	ENSMUST00000037235.7|Xkr7|ENSMUSG00000042631.8|X-linked Kx blood group related 7
mm39_v1_chr2_-_6889783_6889807	0.01276212570195761	AGUGGUU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr3_+_32583602_32583676	0.01268866542109062	AGUGGUU	ENSMUST00000091257.11|Mfn1|ENSMUSG00000027668.14|mitofusin 1
mm39_v1_chr15_-_96597610_96597617	0.012583524855295392	AGUGGUU	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr3_+_58322119_58322161	0.012453404309944816	AGUGGUU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr6_+_142332941_142333017	0.012192570881225814	AGUGGUU	ENSMUST00000032372.7|Golt1b|ENSMUSG00000030245.11|golgi transport 1B
mm39_v1_chr2_-_91854844_91854847	0.01167995746250459	AGUGGUU	ENSMUST00000028663.5|Creb3l1|ENSMUSG00000027230.10|cAMP responsive element binding protein 3-like 1
mm39_v1_chr9_+_77824646_77824668	0.01146719740805282	AGUGGUU	ENSMUST00000034904.14|Elovl5|ENSMUSG00000032349.14|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm39_v1_chr4_-_99717359_99717428	0.01133859784423965	AGUGGUU	ENSMUST00000146258.2|Itgb3bp|ENSMUSG00000028549.18|integrin beta 3 binding protein (beta3-endonexin)
mm39_v1_chr16_-_85698679_85698716	0.011261919229021622	AGUGGUU	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr4_+_138181616_138181643	0.011241254435056941	AGUGGUU	ENSMUST00000050918.4|Camk2n1|ENSMUSG00000046447.4|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm39_v1_chr16_-_76170714_76170741	0.011117870243723333	AGUGGUU	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr16_+_20354225_20354300	0.010489045417017983	AGUGGUU	ENSMUST00000090023.13|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000007216.9|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit	ENSMUST00000232001.2|Ap2m1|ENSMUSG00000022841.16|adaptor-related protein complex 2, mu 1 subunit
mm39_v1_chr11_-_73067828_73067873	0.010398785485645419	AGUGGUU	ENSMUST00000108480.2|Emc6|ENSMUSG00000047260.5|ER membrane protein complex subunit 6	ENSMUST00000054952.4|Emc6|ENSMUSG00000047260.5|ER membrane protein complex subunit 6
mm39_v1_chrX_-_87159237_87159281	0.010031158413768894	AGUGGUU	ENSMUST00000113966.8|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1	ENSMUST00000113964.2|Il1rapl1|ENSMUSG00000052372.11|interleukin 1 receptor accessory protein-like 1
mm39_v1_chr4_-_59549314_59549364	0.009788188517825506	AGUGGUU	ENSMUST00000148331.9|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000030076.12|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr11_-_101979297_101979359	0.009383196995845397	AGUGGUU	ENSMUST00000017458.11|Mpp2|ENSMUSG00000017314.13|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
mm39_v1_chr12_+_95658987_95659011	0.009012070988674927	AGUGGUU	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr8_+_106363141_106363221	0.009007816017101232	AGUGGUU	ENSMUST00000005841.16|Ctcf|ENSMUSG00000005698.16|CCCTC-binding factor
mm39_v1_chr12_-_91815855_91815931	0.008866150262752165	AGUGGUU	ENSMUST00000167466.2|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000021347.12|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)	ENSMUST00000178462.8|Sel1l|ENSMUSG00000020964.15|sel-1 suppressor of lin-12-like (C. elegans)
mm39_v1_chr4_-_123236596_123236711	0.008788526524571034	AGUGGUU	ENSMUST00000102641.10|Bmp8a|ENSMUSG00000032726.13|bone morphogenetic protein 8a
mm39_v1_chr1_+_136552639_136552688	0.008758055568048225	AGUGGUU	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr1_-_171910324_171910362	0.008741350421183439	AGUGGUU	ENSMUST00000003550.11|Ncstn|ENSMUSG00000003458.13|nicastrin
mm39_v1_chr5_+_75312939_75312967	0.008570011563169161	AGUGGUU	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr4_+_99952988_99953064	0.008545304713808776	AGUGGUU	ENSMUST00000039630.6|Ror1|ENSMUSG00000035305.6|receptor tyrosine kinase-like orphan receptor 1
mm39_v1_chr5_+_92957231_92957295	0.008530464269705985	AGUGGUU	ENSMUST00000113054.9|Shroom3|ENSMUSG00000029381.17|shroom family member 3
mm39_v1_chr18_+_56840813_56841028	0.008476252782374192	AGUGGUU	ENSMUST00000025486.9|Lmnb1|ENSMUSG00000024590.9|lamin B1
mm39_v1_chr18_-_38734389_38734468	0.008401201337833914	AGUGGUU	ENSMUST00000025295.8|Spry4|ENSMUSG00000024427.8|sprouty RTK signaling antagonist 4
mm39_v1_chr17_+_53873964_53874050	0.008376676495798596	AGUGGUU	ENSMUST00000000724.15|Kat2b|ENSMUSG00000000708.15|K(lysine) acetyltransferase 2B
mm39_v1_chr9_-_75466885_75466946	0.00831242535603692	AGUGGUU	ENSMUST00000072232.9|Tmod3|ENSMUSG00000058587.10|tropomodulin 3
mm39_v1_chr13_-_29137673_29137696	0.00815154428499611	AGUGGUU	ENSMUST00000067230.6|Sox4|ENSMUSG00000076431.5|SRY (sex determining region Y)-box 4
mm39_v1_chr13_+_15638466_15638565	0.007918144163324863	AGUGGUU	ENSMUST00000110510.4|Gli3|ENSMUSG00000021318.16|GLI-Kruppel family member GLI3
mm39_v1_chr5_+_36622342_36622342	0.007651680894644446	AGUGGUU	ENSMUST00000031099.4|Grpel1|ENSMUSG00000029198.4|GrpE-like 1, mitochondrial
mm39_v1_chr10_-_30476658_30476745	0.007488809549603527	AGUGGUU	ENSMUST00000019927.7|Trmt11|ENSMUSG00000019792.9|tRNA methyltransferase 11
mm39_v1_chr12_-_108241392_108241476	0.007400234678160053	AGUGGUU	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chr2_-_119039247_119039283	0.007392901204475559	AGUGGUU	ENSMUST00000038439.4|Dnajc17|ENSMUSG00000034278.4|DnaJ heat shock protein family (Hsp40) member C17
mm39_v1_chr2_+_133394079_133394157	0.0069512494523734725	AGUGGUU	ENSMUST00000028836.7|Bmp2|ENSMUSG00000027358.7|bone morphogenetic protein 2
mm39_v1_chr11_+_59197746_59197761	0.006871282279742953	AGUGGUU	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr8_+_106581719_106581781	0.006825773887136427	AGUGGUU	ENSMUST00000040445.9|Thap11|ENSMUSG00000036442.9|THAP domain containing 11
mm39_v1_chr15_-_102425241_102425499	0.006513650431906368	AGUGGUU	ENSMUST00000169162.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000023812.10|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000165174.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169367.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12	ENSMUST00000169377.8|Map3k12|ENSMUSG00000023050.10|mitogen-activated protein kinase kinase kinase 12
mm39_v1_chr14_-_47805861_47805896	0.006386159370920053	AGUGGUU	ENSMUST00000228784.2|Atg14|ENSMUSG00000037526.8|autophagy related 14	ENSMUST00000042988.7|Atg14|ENSMUSG00000037526.8|autophagy related 14
mm39_v1_chr15_-_97729341_97729393	0.006381708165980623	AGUGGUU	ENSMUST00000079838.14|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7	ENSMUST00000118294.8|Hdac7|ENSMUSG00000022475.20|histone deacetylase 7
mm39_v1_chr5_-_3852857_3852925	0.006365370430552244	AGUGGUU	ENSMUST00000043551.11|Ankib1|ENSMUSG00000040351.12|ankyrin repeat and IBR domain containing 1
mm39_v1_chr7_-_83735702_83735717	0.0059549446738383655	AGUGGUU	ENSMUST00000064174.12|Cemip|ENSMUSG00000052353.14|cell migration inducing protein, hyaluronan binding
mm39_v1_chr11_-_89193158_89193158	0.005650660912344758	AGUGGUU	ENSMUST00000061728.5|Nog|ENSMUSG00000048616.5|noggin
mm39_v1_chr6_-_13839914_13839941	0.0053103420061649045	AGUGGUU	ENSMUST00000060442.14|Gpr85|ENSMUSG00000048216.14|G protein-coupled receptor 85
mm39_v1_chr18_-_58343423_58343559	0.005066300780178945	AGUGGUU	ENSMUST00000025497.8|Fbn2|ENSMUSG00000024598.10|fibrillin 2
mm39_v1_chr6_+_29348068_29348123	0.004855418137851795	AGUGGUU	ENSMUST00000173216.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000173694.5|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000172974.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000031779.17|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000090481.14|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr8_-_25506756_25506892	0.004395888971285222	AGUGGUU	ENSMUST00000084032.6|Adam9|ENSMUSG00000031555.16|a disintegrin and metallopeptidase domain 9 (meltrin gamma)	ENSMUST00000207132.2|Adam9|ENSMUSG00000031555.16|a disintegrin and metallopeptidase domain 9 (meltrin gamma)
mm39_v1_chr12_+_71877838_71877948	0.004387057549863252	AGUGGUU	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chr11_+_114566257_114566321	0.004359424609035871	AGUGGUU	ENSMUST00000045779.6|Ttyh2|ENSMUSG00000034714.10|tweety family member 2
mm39_v1_chr13_-_18118736_18118824	0.004298387947082711	AGUGGUU	ENSMUST00000009003.9|Rala|ENSMUSG00000008859.9|v-ral simian leukemia viral oncogene A (ras related)
mm39_v1_chr6_-_13677928_13677974	0.004291467593434377	AGUGGUU	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr18_+_53309388_53309448	0.0042339041598791535	AGUGGUU	ENSMUST00000037850.7|Snx2|ENSMUSG00000034484.9|sorting nexin 2
mm39_v1_chrX_+_139565657_139565821	0.004189469560818039	AGUGGUU	ENSMUST00000112990.8|Mid2|ENSMUSG00000000266.12|midline 2	ENSMUST00000112988.8|Mid2|ENSMUSG00000000266.12|midline 2
mm39_v1_chr3_+_9315662_9315662	0.004103839081879125	AGUGGUU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr4_-_53159885_53159900	0.004000998182332918	AGUGGUU	ENSMUST00000030010.4|Abca1|ENSMUSG00000015243.5|ATP-binding cassette, sub-family A (ABC1), member 1
mm39_v1_chr17_+_70276068_70276083	0.00397949969724929	AGUGGUU	ENSMUST00000133983.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
mm39_v1_chr2_+_145745154_145745214	0.0037975206292390857	AGUGGUU	ENSMUST00000110000.8|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit	ENSMUST00000002805.14|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit	ENSMUST00000169732.8|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit	ENSMUST00000134759.3|Naa20|ENSMUSG00000002728.15|N(alpha)-acetyltransferase 20, NatB catalytic subunit
mm39_v1_chr11_+_54194624_54194670	0.003501419292127729	AGUGGUU	ENSMUST00000093106.12|Acsl6|ENSMUSG00000020333.18|acyl-CoA synthetase long-chain family member 6
mm39_v1_chr4_-_91260265_91260306	0.0032265513626133224	AGUGGUU	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr11_-_78588194_78588205	0.003224500072818428	AGUGGUU	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr12_-_91556761_91556783	0.0030359429943070354	AGUGGUU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr7_-_81356653_81356711	0.0026377189317313317	AGUGGUU	ENSMUST00000026922.15|Homer2|ENSMUSG00000025813.15|homer scaffolding protein 2
mm39_v1_chr7_+_98484311_98484338	0.0026300266542895172	AGUGGUU	ENSMUST00000165122.8|Wnt11|ENSMUSG00000015957.13|wingless-type MMTV integration site family, member 11	ENSMUST00000067495.9|Wnt11|ENSMUSG00000015957.13|wingless-type MMTV integration site family, member 11
mm39_v1_chr8_+_57774010_57774027	0.0026069603956662703	AGUGGUU	ENSMUST00000040104.5|Hand2|ENSMUSG00000038193.5|heart and neural crest derivatives expressed 2
mm39_v1_chr9_-_75518585_75518616	0.002515287084615412	AGUGGUU	ENSMUST00000098552.10|Tmod2|ENSMUSG00000032186.16|tropomodulin 2	ENSMUST00000064433.11|Tmod2|ENSMUSG00000032186.16|tropomodulin 2
mm39_v1_chr14_+_55120875_55120972	0.002442387066096429	AGUGGUU	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr4_+_34550918_34550945	0.0024197340090006338	AGUGGUU	ENSMUST00000084299.6|Akirin2|ENSMUSG00000028291.8|akirin 2
mm39_v1_chr19_-_10181243_10181533	0.002406377513677241	AGUGGUU	ENSMUST00000142241.2|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000116542.9|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000025651.6|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000156291.2|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1
mm39_v1_chr14_-_60488922_60488956	0.0023121568782421068	AGUGGUU	ENSMUST00000225311.2|Gm49336|ENSMUSG00000114797.2|predicted gene, 49336	ENSMUST00000041905.8|Gm49336|ENSMUSG00000114797.2|predicted gene, 49336
mm39_v1_chr9_-_86453862_86453901	0.002250914592144269	AGUGGUU	ENSMUST00000070064.11|Pgm3|ENSMUSG00000056131.14|phosphoglucomutase 3	ENSMUST00000072585.8|Pgm3|ENSMUSG00000056131.14|phosphoglucomutase 3
mm39_v1_chrX_-_162859095_162859125	0.0022277801095004625	AGUGGUU	ENSMUST00000037928.9|Siah1b|ENSMUSG00000040749.12|siah E3 ubiquitin protein ligase 1B
mm39_v1_chrX_-_100266032_100266169	0.002153975647879952	AGUGGUU	ENSMUST00000120389.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000156473.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000077876.4|Snx12|ENSMUSG00000046032.17|sorting nexin 12
mm39_v1_chr14_+_27344385_27344500	0.0020552725191485843	AGUGGUU	ENSMUST00000210135.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000090302.6|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2	ENSMUST00000211087.2|Erc2|ENSMUSG00000040640.12|ELKS/RAB6-interacting/CAST family member 2
mm39_v1_chr10_+_44943262_44943375	0.0019785254481191504	AGUGGUU	ENSMUST00000099858.4|Prep|ENSMUSG00000019849.12|prolyl endopeptidase
mm39_v1_chr1_+_12762501_12762590	0.001872490153369806	AGUGGUU	ENSMUST00000177608.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1	ENSMUST00000180062.8|Sulf1|ENSMUSG00000016918.16|sulfatase 1
mm39_v1_chr3_+_128993568_128993591	0.0018192437890416219	AGUGGUU	ENSMUST00000029657.16|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2	ENSMUST00000106382.11|Pitx2|ENSMUSG00000028023.17|paired-like homeodomain transcription factor 2
mm39_v1_chr4_+_109137462_109137513	0.001819171197770825	AGUGGUU	ENSMUST00000102729.10|Eps15|ENSMUSG00000028552.14|epidermal growth factor receptor pathway substrate 15
mm39_v1_chr5_+_96521814_96521814	0.001531436806458734	AGUGGUU	ENSMUST00000036019.5|Fras1|ENSMUSG00000034687.9|Fraser extracellular matrix complex subunit 1
mm39_v1_chr16_-_45664664_45664744	0.0015010505367848473	AGUGGUU	ENSMUST00000036355.13|Phldb2|ENSMUSG00000033149.18|pleckstrin homology like domain, family B, member 2
mm39_v1_chr14_+_30741082_30741114	0.001497794519493488	AGUGGUU	ENSMUST00000112098.11|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112095.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000112106.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1	ENSMUST00000146325.8|Pbrm1|ENSMUSG00000042323.18|polybromo 1
mm39_v1_chr13_+_111822712_111822745	0.0011560826337121111	AGUGGUU	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr7_-_89166781_89166796	0.001070409392307046	AGUGGUU	ENSMUST00000041761.7|Prss23|ENSMUSG00000039405.8|protease, serine 23
mm39_v1_chr3_+_145827410_145827438	0.0008657706404262391	AGUGGUU	ENSMUST00000039450.5|Mcoln3|ENSMUSG00000036853.6|mucolipin 3
mm39_v1_chr3_+_102377234_102377251	0.0005122648493343055	AGUGGUU	ENSMUST00000035952.5|Ngf|ENSMUSG00000027859.11|nerve growth factor	ENSMUST00000198168.5|Ngf|ENSMUSG00000027859.11|nerve growth factor	ENSMUST00000106925.9|Ngf|ENSMUSG00000027859.11|nerve growth factor
mm39_v1_chr5_+_32768515_32768589	0.0004934707871563619	AGUGGUU	ENSMUST00000202543.4|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase	ENSMUST00000072311.13|Yes1|ENSMUSG00000014932.16|YES proto-oncogene 1, Src family tyrosine kinase
mm39_v1_chr4_-_49845549_49845549	0.0004755949442874441	AGUGGUU	ENSMUST00000093859.11|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A	ENSMUST00000076674.4|Grin3a|ENSMUSG00000039579.16|glutamate receptor ionotropic, NMDA3A
mm39_v1_chr11_-_47270201_47270349	0.0004047685711034307	AGUGGUU	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr17_+_88748139_88748217	0.00039272019316975655	AGUGGUU	ENSMUST00000112238.9|Foxn2|ENSMUSG00000034998.19|forkhead box N2	ENSMUST00000155640.2|Foxn2|ENSMUSG00000034998.19|forkhead box N2
mm39_v1_chr2_+_131333800_131333864	7.569041753652653e-05	AGUGGUU	ENSMUST00000110179.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110189.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110182.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110183.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110186.9|Smox|ENSMUSG00000027333.19|spermine oxidase	ENSMUST00000110188.8|Smox|ENSMUSG00000027333.19|spermine oxidase
