mm39_v1_chr6_+_51447613_51447726	0.16578617659376002	AUAAAGU	ENSMUST00000114445.8|Cbx3|ENSMUSG00000029836.16|chromobox 3	ENSMUST00000114446.8|Cbx3|ENSMUSG00000029836.16|chromobox 3	ENSMUST00000141711.3|Cbx3|ENSMUSG00000029836.16|chromobox 3
mm39_v1_chr8_+_106786190_106786265	0.1587551512447774	AUAAAGU	ENSMUST00000109308.3|Nfatc3|ENSMUSG00000031902.11|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
mm39_v1_chr1_+_127132712_127132788	0.15162810948031022	AUAAAGU	ENSMUST00000038361.11|Mgat5|ENSMUSG00000036155.14|mannoside acetylglucosaminyltransferase 5
mm39_v1_chr12_-_54250646_54250673	0.1499259570504747	AUAAAGU	ENSMUST00000039516.4|Egln3|ENSMUSG00000035105.6|egl-9 family hypoxia-inducible factor 3
mm39_v1_chr11_-_115426618_115426718	0.1382728195934478	AUAAAGU	ENSMUST00000121185.8|Sumo2|ENSMUSG00000020738.17|small ubiquitin-like modifier 2	ENSMUST00000117589.8|Sumo2|ENSMUSG00000020738.17|small ubiquitin-like modifier 2
mm39_v1_chr2_+_127178072_127178086	0.13792944217412248	AUAAAGU	ENSMUST00000028846.7|Dusp2|ENSMUSG00000027368.7|dual specificity phosphatase 2
mm39_v1_chr14_-_31552608_31552689	0.13602545482671394	AUAAAGU	ENSMUST00000014640.9|Ankrd28|ENSMUSG00000014496.9|ankyrin repeat domain 28
mm39_v1_chr5_+_75735576_75735663	0.12823259292299136	AUAAAGU	ENSMUST00000144270.8|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase	ENSMUST00000005815.7|Kit|ENSMUSG00000005672.13|KIT proto-oncogene receptor tyrosine kinase
mm39_v1_chr12_+_85520652_85520672	0.12277002782328598	AUAAAGU	ENSMUST00000021674.7|Fos|ENSMUSG00000021250.14|FBJ osteosarcoma oncogene
mm39_v1_chr9_-_115139489_115139516	0.1205573718410512	AUAAAGU	ENSMUST00000035010.10|Stt3b|ENSMUSG00000032437.11|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm39_v1_chr18_+_78392969_78392969	0.11689229947795465	AUAAAGU	ENSMUST00000164064.2|Gm6133|ENSMUSG00000090451.2|predicted gene 6133
mm39_v1_chr5_+_138159333_138159378	0.11560177388961887	AUAAAGU	ENSMUST00000019638.15|Cops6|ENSMUSG00000019494.15|COP9 signalosome subunit 6	ENSMUST00000110951.8|Cops6|ENSMUSG00000019494.15|COP9 signalosome subunit 6
mm39_v1_chr4_+_102617495_102617722	0.11105296552891189	AUAAAGU	ENSMUST00000072481.12|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000156596.8|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000080728.13|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1	ENSMUST00000106882.9|Sgip1|ENSMUSG00000028524.22|SH3-domain GRB2-like (endophilin) interacting protein 1
mm39_v1_chrX_+_138511360_138511408	0.10820751236566253	AUAAAGU	ENSMUST00000113026.2|Rnf128|ENSMUSG00000031438.12|ring finger protein 128
mm39_v1_chr6_-_129252396_129252402	0.10660596904009914	AUAAAGU	ENSMUST00000032259.6|Cd69|ENSMUSG00000030156.6|CD69 antigen
mm39_v1_chr16_-_78173645_78173706	0.10614530643608104	AUAAAGU	ENSMUST00000023570.14|Btg3|ENSMUSG00000022863.16|BTG anti-proliferation factor 3
mm39_v1_chr11_+_95925711_95925791	0.10335394794478892	AUAAAGU	ENSMUST00000006217.10|Snf8|ENSMUSG00000006058.11|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	ENSMUST00000107700.4|Snf8|ENSMUSG00000006058.11|SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)
mm39_v1_chr1_-_180641159_180641197	0.10318730517881716	AUAAAGU	ENSMUST00000162118.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000159685.2|H3f3a|ENSMUSG00000060743.13|H3.3 histone A	ENSMUST00000161308.8|H3f3a|ENSMUSG00000060743.13|H3.3 histone A
mm39_v1_chr13_-_6698751_6698815	0.10260297261088526	AUAAAGU	ENSMUST00000021614.14|Pfkp|ENSMUSG00000021196.15|phosphofructokinase, platelet	ENSMUST00000138703.8|Pfkp|ENSMUSG00000021196.15|phosphofructokinase, platelet
mm39_v1_chr9_-_100428113_100428192	0.10093422503604832	AUAAAGU	ENSMUST00000186591.7|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1	ENSMUST00000116522.8|Nck1|ENSMUSG00000032475.16|non-catalytic region of tyrosine kinase adaptor protein 1
mm39_v1_chr1_+_160022785_160022873	0.0996626428795025	AUAAAGU	ENSMUST00000135680.8|Mrps14|ENSMUSG00000058267.14|mitochondrial ribosomal protein S14	ENSMUST00000097193.3|Mrps14|ENSMUSG00000058267.14|mitochondrial ribosomal protein S14
mm39_v1_chr2_-_157408239_157408281	0.09953743856016126	AUAAAGU	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr8_+_124958099_124958188	0.09772086416645794	AUAAAGU	ENSMUST00000034458.9|Galnt2|ENSMUSG00000089704.10|polypeptide N-acetylgalactosaminyltransferase 2
mm39_v1_chr12_-_90705212_90705342	0.09728832682228196	AUAAAGU	ENSMUST00000082432.6|Dio2|ENSMUSG00000007682.8|deiodinase, iodothyronine, type II
mm39_v1_chr2_-_131987008_131987037	0.09714628818802985	AUAAAGU	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr2_+_18681812_18681842	0.0962256905843144	AUAAAGU	ENSMUST00000028071.13|Bmi1|ENSMUSG00000026739.14|Bmi1 polycomb ring finger oncogene
mm39_v1_chr4_+_108317197_108317227	0.0955990901629051	AUAAAGU	ENSMUST00000097925.9|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chr2_+_78699360_78699443	0.09505419034357888	AUAAAGU	ENSMUST00000028398.14|Ube2e3|ENSMUSG00000027011.15|ubiquitin-conjugating enzyme E2E 3
mm39_v1_chr9_-_62029877_62029900	0.09355909583068178	AUAAAGU	ENSMUST00000185675.7|Glce|ENSMUSG00000032252.15|glucuronyl C5-epimerase
mm39_v1_chr9_-_56068282_56068360	0.08873905844846397	AUAAAGU	ENSMUST00000034876.10|Tspan3|ENSMUSG00000032324.12|tetraspanin 3
mm39_v1_chr1_+_43484895_43484994	0.08446124025913371	AUAAAGU	ENSMUST00000086421.9|Nck2|ENSMUSG00000066877.12|non-catalytic region of tyrosine kinase adaptor protein 2
mm39_v1_chr15_-_39807081_39807200	0.0828742073490606	AUAAAGU	ENSMUST00000022916.13|Lrp12|ENSMUSG00000022305.14|low density lipoprotein-related protein 12
mm39_v1_chr3_+_58484057_58484125	0.08216031704284277	AUAAAGU	ENSMUST00000107924.3|Selenot|ENSMUSG00000075700.11|selenoprotein T
mm39_v1_chrX_+_36137948_36137999	0.08059773061654243	AUAAAGU	ENSMUST00000016452.11|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000202991.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000201068.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A	ENSMUST00000200835.4|Ube2a|ENSMUSG00000016308.13|ubiquitin-conjugating enzyme E2A
mm39_v1_chr7_-_99508117_99508184	0.07908616000906449	AUAAAGU	ENSMUST00000209032.2|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)	ENSMUST00000036274.8|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm39_v1_chr14_-_69969959_69970031	0.07898984279585668	AUAAAGU	ENSMUST00000036381.10|Chmp7|ENSMUSG00000034190.10|charged multivesicular body protein 7
mm39_v1_chr2_-_155434487_155434730	0.07869112248863516	AUAAAGU	ENSMUST00000155347.2|Gss|ENSMUSG00000027610.18|glutathione synthetase	ENSMUST00000130881.8|Gss|ENSMUSG00000027610.18|glutathione synthetase	ENSMUST00000079691.13|Gss|ENSMUSG00000027610.18|glutathione synthetase
mm39_v1_chr2_-_26823793_26823940	0.07854254207690775	AUAAAGU	ENSMUST00000154651.2|Surf4|ENSMUSG00000014867.10|surfeit gene 4	ENSMUST00000015011.10|Surf4|ENSMUSG00000014867.10|surfeit gene 4
mm39_v1_chr6_-_86710250_86710377	0.07848757886074881	AUAAAGU	ENSMUST00000001185.14|Gmcl1|ENSMUSG00000001157.14|germ cell-less, spermatogenesis associated 1
mm39_v1_chr3_-_144275897_144275989	0.0776824556165348	AUAAAGU	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr16_-_78373510_78373535	0.07687765678453196	AUAAAGU	ENSMUST00000231973.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000232528.2|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed	ENSMUST00000114220.9|D16Ertd472e|ENSMUSG00000022864.15|DNA segment, Chr 16, ERATO Doi 472, expressed
mm39_v1_chr11_-_95956176_95956214	0.0749132511950467	AUAAAGU	ENSMUST00000100528.5|Ube2z|ENSMUSG00000014349.8|ubiquitin-conjugating enzyme E2Z
mm39_v1_chr18_+_69478790_69478882	0.07453273048640904	AUAAAGU	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr2_+_76505619_76505630	0.07399640225149069	AUAAAGU	ENSMUST00000111920.2|Plekha3|ENSMUSG00000002733.9|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm39_v1_chr11_-_40583493_40583601	0.07295410855101364	AUAAAGU	ENSMUST00000040167.11|Mat2b|ENSMUSG00000042032.14|methionine adenosyltransferase II, beta
mm39_v1_chr12_+_108758871_108758914	0.07290410097780842	AUAAAGU	ENSMUST00000021692.9|Yy1|ENSMUSG00000021264.13|YY1 transcription factor
mm39_v1_chr5_-_44383943_44383975	0.07266335215318924	AUAAAGU	ENSMUST00000055128.12|Tapt1|ENSMUSG00000046985.12|transmembrane anterior posterior transformation 1
mm39_v1_chr9_+_57615816_57615891	0.0715947903144855	AUAAAGU	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr18_-_24153805_24153876	0.07073472707853827	AUAAAGU	ENSMUST00000066497.12|Zfp24|ENSMUSG00000051469.15|zinc finger protein 24
mm39_v1_chr6_-_52211882_52211940	0.07050876438213598	AUAAAGU	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr12_-_102844537_102844709	0.06657050097586784	AUAAAGU	ENSMUST00000045652.8|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7	ENSMUST00000223554.2|Btbd7|ENSMUSG00000041702.8|BTB (POZ) domain containing 7
mm39_v1_chr12_-_54842488_54842499	0.06508648843337064	AUAAAGU	ENSMUST00000005798.9|Snx6|ENSMUSG00000005656.10|sorting nexin 6
mm39_v1_chr16_-_10603389_10603407	0.06504898254365625	AUAAAGU	ENSMUST00000229866.2|Socs1|ENSMUSG00000038037.6|suppressor of cytokine signaling 1	ENSMUST00000038099.6|Socs1|ENSMUSG00000038037.6|suppressor of cytokine signaling 1
mm39_v1_chr15_-_31531122_31531215	0.06463689536641563	AUAAAGU	ENSMUST00000090227.6|Marchf6|ENSMUSG00000039100.11|membrane associated ring-CH-type finger 6
mm39_v1_chr3_-_105708632_105708694	0.06350575268207515	AUAAAGU	ENSMUST00000090678.11|Rap1a|ENSMUSG00000068798.11|RAS-related protein 1a
mm39_v1_chr11_-_115405200_115405219	0.06303793013841653	AUAAAGU	ENSMUST00000021083.7|Jpt1|ENSMUSG00000020737.13|Jupiter microtubule associated homolog 1
mm39_v1_chr2_+_29951859_29951880	0.06273755050225868	AUAAAGU	ENSMUST00000102866.10|Set|ENSMUSG00000054766.14|SET nuclear oncogene
mm39_v1_chr11_+_80099843_80099884	0.062052915634435865	AUAAAGU	ENSMUST00000077451.14|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1	ENSMUST00000055056.16|Rhot1|ENSMUSG00000017686.18|ras homolog family member T1
mm39_v1_chr6_+_88061464_88061509	0.061931355484446796	AUAAAGU	ENSMUST00000032143.8|Rpn1|ENSMUSG00000030062.8|ribophorin I
mm39_v1_chrX_+_65692924_65693001	0.06176140596058941	AUAAAGU	ENSMUST00000166241.2|Slitrk2|ENSMUSG00000036790.6|SLIT and NTRK-like family, member 2
mm39_v1_chr18_+_3383230_3383271	0.061074238134511266	AUAAAGU	ENSMUST00000162301.8|Cul2|ENSMUSG00000024231.16|cullin 2	ENSMUST00000161317.2|Cul2|ENSMUSG00000024231.16|cullin 2
mm39_v1_chr13_+_119565424_119565498	0.060341076030760644	AUAAAGU	ENSMUST00000026520.14|Paip1|ENSMUSG00000025451.16|polyadenylate binding protein-interacting protein 1
mm39_v1_chr12_+_32428691_32428709	0.06004843636603907	AUAAAGU	ENSMUST00000172332.4|Ccdc71l|ENSMUSG00000090946.4|coiled-coil domain containing 71 like
mm39_v1_chr5_+_29774205_29774265	0.05966280726365591	AUAAAGU	ENSMUST00000049453.9|Ube3c|ENSMUSG00000039000.9|ubiquitin protein ligase E3C
mm39_v1_chr11_-_58059293_58059370	0.05958908140602312	AUAAAGU	ENSMUST00000172035.8|Gemin5|ENSMUSG00000037275.15|gem nuclear organelle associated protein 5	ENSMUST00000035604.13|Gemin5|ENSMUSG00000037275.15|gem nuclear organelle associated protein 5	ENSMUST00000102711.9|Gemin5|ENSMUSG00000037275.15|gem nuclear organelle associated protein 5
mm39_v1_chr7_-_112968533_112968602	0.0591569214664674	AUAAAGU	ENSMUST00000047091.14|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10	ENSMUST00000119278.8|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10
mm39_v1_chr9_+_120762466_120762638	0.058005761044170025	AUAAAGU	ENSMUST00000007130.15|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1	ENSMUST00000178812.9|Ctnnb1|ENSMUSG00000006932.18|catenin (cadherin associated protein), beta 1
mm39_v1_chr8_+_85428059_85428173	0.05691397697899772	AUAAAGU	ENSMUST00000238364.2|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1	ENSMUST00000238562.2|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1	ENSMUST00000037165.6|Lyl1|ENSMUSG00000034041.6|lymphoblastomic leukemia 1
mm39_v1_chr5_-_88823989_88824045	0.05620649251185931	AUAAAGU	ENSMUST00000078945.12|Grsf1|ENSMUSG00000044221.15|G-rich RNA sequence binding factor 1
mm39_v1_chr1_-_164285914_164285932	0.0561361217156598	AUAAAGU	ENSMUST00000027863.13|Atp1b1|ENSMUSG00000026576.13|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm39_v1_chr15_+_58287305_58287361	0.05504364585797385	AUAAAGU	ENSMUST00000037270.5|Fam91a1|ENSMUSG00000037119.5|family with sequence similarity 91, member A1
mm39_v1_chr16_-_31821938_31822105	0.054979624528208676	AUAAAGU	ENSMUST00000023457.13|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5	ENSMUST00000231360.2|Senp5|ENSMUSG00000022772.13|SUMO/sentrin specific peptidase 5
mm39_v1_chr9_-_94420128_94420142	0.05449389734082332	AUAAAGU	ENSMUST00000113028.2|Dipk2a|ENSMUSG00000045414.8|divergent protein kinase domain 2A
mm39_v1_chr6_-_72416531_72416548	0.05448386490809518	AUAAAGU	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr6_-_49191891_49191959	0.05426625711630214	AUAAAGU	ENSMUST00000031838.9|Igf2bp3|ENSMUSG00000029814.11|insulin-like growth factor 2 mRNA binding protein 3
mm39_v1_chr18_-_77652820_77652858	0.05411376818210261	AUAAAGU	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr15_+_102378966_102379220	0.053983456544372484	AUAAAGU	ENSMUST00000077037.13|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229102.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229618.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229275.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000231089.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229802.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000229854.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2	ENSMUST00000108838.5|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr9_-_82857528_82857569	0.053785662475794464	AUAAAGU	ENSMUST00000034787.12|Phip|ENSMUSG00000032253.14|pleckstrin homology domain interacting protein
mm39_v1_chr11_-_106679312_106679358	0.05355255238173375	AUAAAGU	ENSMUST00000021062.12|Ddx5|ENSMUSG00000020719.15|DEAD box helicase 5
mm39_v1_chr1_-_165762469_165762605	0.0524540010304434	AUAAAGU	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr9_-_15191218_15191227	0.05154955077631441	AUAAAGU	ENSMUST00000034411.10|Med17|ENSMUSG00000031935.10|mediator complex subunit 17
mm39_v1_chr14_-_40688764_40688834	0.05145705088593623	AUAAAGU	ENSMUST00000047652.6|Tspan14|ENSMUSG00000037824.7|tetraspanin 14
mm39_v1_chr2_+_121859025_121859137	0.05072115890736146	AUAAAGU	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chrX_+_133587268_133587286	0.05048705337402443	AUAAAGU	ENSMUST00000124226.3|Armcx4|ENSMUSG00000049804.10|armadillo repeat containing, X-linked 4
mm39_v1_chr5_+_139238069_139238088	0.05031064352942757	AUAAAGU	ENSMUST00000026976.12|Get4|ENSMUSG00000025858.13|golgi to ER traffic protein 4
mm39_v1_chr12_-_110855521_110855581	0.05026985842127034	AUAAAGU	ENSMUST00000220607.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000221182.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000222457.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000221102.2|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein	ENSMUST00000043716.9|Cinp|ENSMUSG00000021276.11|cyclin-dependent kinase 2 interacting protein
mm39_v1_chr10_+_92996686_92996756	0.05002559555499697	AUAAAGU	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chrX_-_141749704_141749730	0.04943080171727677	AUAAAGU	ENSMUST00000041317.3|Ammecr1|ENSMUSG00000042225.4|Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
mm39_v1_chr6_-_50543514_50543538	0.04925117024093031	AUAAAGU	ENSMUST00000161401.2|Cycs|ENSMUSG00000063694.6|cytochrome c, somatic
mm39_v1_chr4_+_149569717_149569764	0.04904379939523591	AUAAAGU	ENSMUST00000030842.8|Lzic|ENSMUSG00000028990.14|leucine zipper and CTNNBIP1 domain containing
mm39_v1_chr10_+_11157047_11157103	0.04858849422237182	AUAAAGU	ENSMUST00000129456.8|Fbxo30|ENSMUSG00000047648.14|F-box protein 30
mm39_v1_chr3_+_136375839_136375948	0.04826655820249658	AUAAAGU	ENSMUST00000070198.14|Ppp3ca|ENSMUSG00000028161.18|protein phosphatase 3, catalytic subunit, alpha isoform
mm39_v1_chr2_+_60040231_60040288	0.048057318749938904	AUAAAGU	ENSMUST00000102748.11|Marchf7|ENSMUSG00000026977.18|membrane associated ring-CH-type finger 7
mm39_v1_chr7_-_141119703_141119770	0.047536344974035555	AUAAAGU	ENSMUST00000118694.8|Chid1|ENSMUSG00000025512.16|chitinase domain containing 1	ENSMUST00000153191.8|Chid1|ENSMUSG00000025512.16|chitinase domain containing 1	ENSMUST00000026586.13|Chid1|ENSMUSG00000025512.16|chitinase domain containing 1	ENSMUST00000166082.8|Chid1|ENSMUSG00000025512.16|chitinase domain containing 1
mm39_v1_chr4_+_97665843_97665870	0.04752405531881778	AUAAAGU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr2_-_53081199_53081296	0.047184192547461166	AUAAAGU	ENSMUST00000239398.2|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A	ENSMUST00000076313.14|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A	ENSMUST00000210789.3|Prpf40a|ENSMUSG00000061136.17|pre-mRNA processing factor 40A
mm39_v1_chr17_-_6923299_6923299	0.047096841052267184	AUAAAGU	ENSMUST00000179554.3|Dynlt1f|ENSMUSG00000095677.3|dynein light chain Tctex-type 1F
mm39_v1_chr17_+_88282472_88282537	0.045890929922739396	AUAAAGU	ENSMUST00000005503.5|Msh6|ENSMUSG00000005370.5|mutS homolog 6
mm39_v1_chr17_+_6869070_6869070	0.04554902234645993	AUAAAGU	ENSMUST00000092966.5|Dynlt1c|ENSMUSG00000000579.15|dynein light chain Tctex-type 1C
mm39_v1_chr8_-_79547707_79547769	0.044626480293871874	AUAAAGU	ENSMUST00000130325.8|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	ENSMUST00000051867.7|Lsm6|ENSMUSG00000031683.17|LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
mm39_v1_chr9_+_122180673_122180803	0.04389580767812779	AUAAAGU	ENSMUST00000156520.8|Abhd5|ENSMUSG00000032540.17|abhydrolase domain containing 5	ENSMUST00000111497.5|Abhd5|ENSMUSG00000032540.17|abhydrolase domain containing 5
mm39_v1_chr1_-_59276252_59276416	0.043841817661513585	AUAAAGU	ENSMUST00000163058.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000160945.2|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor	ENSMUST00000027178.13|Als2|ENSMUSG00000026024.15|alsin Rho guanine nucleotide exchange factor
mm39_v1_chr9_+_25163735_25163812	0.04326385869903554	AUAAAGU	ENSMUST00000115272.9|Septin7|ENSMUSG00000001833.18|septin 7	ENSMUST00000165594.4|Septin7|ENSMUSG00000001833.18|septin 7
mm39_v1_chr3_-_10505113_10505185	0.04315826305338174	AUAAAGU	ENSMUST00000029047.12|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000195822.2|Snx16|ENSMUSG00000027534.17|sorting nexin 16	ENSMUST00000099223.11|Snx16|ENSMUSG00000027534.17|sorting nexin 16
mm39_v1_chr12_-_40087393_40087428	0.04220316140759409	AUAAAGU	ENSMUST00000146905.2|Arl4a|ENSMUSG00000047446.19|ADP-ribosylation factor-like 4A
mm39_v1_chr3_+_32583602_32583676	0.04207732711184159	AUAAAGU	ENSMUST00000091257.11|Mfn1|ENSMUSG00000027668.14|mitofusin 1
mm39_v1_chr1_-_69724939_69724987	0.04117124896434706	AUAAAGU	ENSMUST00000027146.9|Ikzf2|ENSMUSG00000025997.14|IKAROS family zinc finger 2
mm39_v1_chr9_-_99450948_99450961	0.04095443187399347	AUAAAGU	ENSMUST00000035043.12|Armc8|ENSMUSG00000032468.12|armadillo repeat containing 8
mm39_v1_chr2_+_148522943_148523070	0.04060829267447828	AUAAAGU	ENSMUST00000028928.8|Gzf1|ENSMUSG00000027439.10|GDNF-inducible zinc finger protein 1
mm39_v1_chr9_-_106124917_106124968	0.0405476012323867	AUAAAGU	ENSMUST00000112524.9|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1	ENSMUST00000219129.2|Alas1|ENSMUSG00000032786.17|aminolevulinic acid synthase 1
mm39_v1_chr8_+_80366247_80366333	0.04054399482052692	AUAAAGU	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chrX_-_93166992_93167018	0.040417268656560534	AUAAAGU	ENSMUST00000088102.12|Zfx|ENSMUSG00000079509.11|zinc finger protein X-linked	ENSMUST00000113927.8|Zfx|ENSMUSG00000079509.11|zinc finger protein X-linked
mm39_v1_chr14_-_54878804_54878834	0.040150358660924805	AUAAAGU	ENSMUST00000067784.8|Cdh24|ENSMUSG00000059674.8|cadherin-like 24
mm39_v1_chr5_-_140375010_140375019	0.0388097459973235	AUAAAGU	ENSMUST00000031539.12|Snx8|ENSMUSG00000029560.13|sorting nexin 8
mm39_v1_chr11_-_49603501_49603555	0.038762682447393663	AUAAAGU	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr4_+_107659474_107659637	0.03787445178450313	AUAAAGU	ENSMUST00000106733.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238651.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000030356.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238421.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000126573.8|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000238569.2|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	ENSMUST00000106732.10|Lrp8|ENSMUSG00000028613.16|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm39_v1_chrX_-_11946785_11946800	0.037591221464627796	AUAAAGU	ENSMUST00000115513.9|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000115512.9|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000065143.14|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor	ENSMUST00000124033.8|Bcor|ENSMUSG00000040363.16|BCL6 interacting corepressor
mm39_v1_chr3_+_28317354_28317364	0.03754584248913772	AUAAAGU	ENSMUST00000159236.9|Tnik|ENSMUSG00000027692.17|TRAF2 and NCK interacting kinase
mm39_v1_chr5_+_69714279_69714437	0.03728192797636591	AUAAAGU	ENSMUST00000087228.11|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase	ENSMUST00000031113.13|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase	ENSMUST00000173205.3|Guf1|ENSMUSG00000029208.17|GUF1 homolog, GTPase
mm39_v1_chr9_+_55949141_55949164	0.0370954193136558	AUAAAGU	ENSMUST00000114276.3|Rcn2|ENSMUSG00000032320.8|reticulocalbin 2
mm39_v1_chr2_+_73102269_73102283	0.036909023380282485	AUAAAGU	ENSMUST00000090813.6|Sp9|ENSMUSG00000068859.6|trans-acting transcription factor 9
mm39_v1_chr11_-_101193106_101193117	0.03673888110945441	AUAAAGU	ENSMUST00000130916.8|Becn1|ENSMUSG00000035086.14|beclin 1, autophagy related
mm39_v1_chr9_-_72019109_72019191	0.036707002370937526	AUAAAGU	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr17_+_87270504_87270537	0.0365818872290537	AUAAAGU	ENSMUST00000024956.15|Rhoq|ENSMUSG00000024143.16|ras homolog family member Q
mm39_v1_chr3_+_95801263_95801289	0.036163091014631714	AUAAAGU	ENSMUST00000015894.12|Aph1a|ENSMUSG00000015750.16|aph1 homolog A, gamma secretase subunit
mm39_v1_chr13_+_93444514_93444542	0.035731734365288696	AUAAAGU	ENSMUST00000079086.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr11_-_61470462_61470533	0.035717917491025465	AUAAAGU	ENSMUST00000147501.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000146455.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108711.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108712.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000001063.15|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000108713.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000179936.8|Epn2|ENSMUSG00000001036.18|epsin 2	ENSMUST00000178202.8|Epn2|ENSMUSG00000001036.18|epsin 2
mm39_v1_chr17_-_46867083_46867114	0.03565618005494044	AUAAAGU	ENSMUST00000015749.7|Srf|ENSMUSG00000015605.7|serum response factor
mm39_v1_chr17_+_6697511_6697604	0.03513022950967423	AUAAAGU	ENSMUST00000179569.3|Dynlt1b|ENSMUSG00000096255.3|dynein light chain Tctex-type 1B
mm39_v1_chr2_+_69727563_69727591	0.034837243365466966	AUAAAGU	ENSMUST00000055758.16|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3	ENSMUST00000112251.9|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3
mm39_v1_chr13_+_91609169_91609262	0.03470008491503051	AUAAAGU	ENSMUST00000004094.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2	ENSMUST00000042122.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2
mm39_v1_chr4_-_149783097_149783165	0.03421437263103435	AUAAAGU	ENSMUST00000038859.14|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	ENSMUST00000105690.9|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
mm39_v1_chr12_+_73170483_73170535	0.034082794783309917	AUAAAGU	ENSMUST00000187549.7|Mnat1|ENSMUSG00000021103.13|menage a trois 1	ENSMUST00000021523.7|Mnat1|ENSMUSG00000021103.13|menage a trois 1
mm39_v1_chr4_+_54947976_54948054	0.03351300420052692	AUAAAGU	ENSMUST00000098070.10|Zfp462|ENSMUSG00000060206.12|zinc finger protein 462
mm39_v1_chr5_+_118114826_118114868	0.03344904054882247	AUAAAGU	ENSMUST00000035579.10|Fbxo21|ENSMUSG00000032898.10|F-box protein 21
mm39_v1_chr3_-_116456292_116456326	0.0329197986894693	AUAAAGU	ENSMUST00000029570.9|Mfsd14a|ENSMUSG00000089911.5|major facilitator superfamily domain containing 14A
mm39_v1_chr1_+_59521583_59521583	0.0328417901434499	AUAAAGU	ENSMUST00000114246.4|Fzd7|ENSMUSG00000041075.9|frizzled class receptor 7
mm39_v1_chr10_-_128727542_128727587	0.03276658654579453	AUAAAGU	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr2_+_71617266_71617322	0.032698329033858865	AUAAAGU	ENSMUST00000112101.8|Itga6|ENSMUSG00000027111.17|integrin alpha 6	ENSMUST00000028522.10|Itga6|ENSMUSG00000027111.17|integrin alpha 6
mm39_v1_chr16_-_30207348_30207348	0.03251445885613533	AUAAAGU	ENSMUST00000061350.13|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3	ENSMUST00000100013.9|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3
mm39_v1_chr19_+_36903471_36903541	0.03195309269383338	AUAAAGU	ENSMUST00000099494.4|Btaf1|ENSMUSG00000040565.9|B-TFIID TATA-box binding protein associated factor 1
mm39_v1_chr12_-_73160181_73160230	0.03114444408750454	AUAAAGU	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr5_-_74229021_74229099	0.0309882953373496	AUAAAGU	ENSMUST00000119154.8|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46	ENSMUST00000068058.14|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46
mm39_v1_chr15_+_21111428_21111538	0.030846718304392545	AUAAAGU	ENSMUST00000075132.8|Cdh12|ENSMUSG00000040452.10|cadherin 12
mm39_v1_chr4_+_45018583_45018668	0.030691143143488277	AUAAAGU	ENSMUST00000133157.8|Polr1e|ENSMUSG00000028318.15|polymerase (RNA) I polypeptide E	ENSMUST00000029999.15|Polr1e|ENSMUSG00000028318.15|polymerase (RNA) I polypeptide E	ENSMUST00000107814.10|Polr1e|ENSMUSG00000028318.15|polymerase (RNA) I polypeptide E
mm39_v1_chr4_-_116664729_116664837	0.030548544216147232	AUAAAGU	ENSMUST00000106455.8|Toe1|ENSMUSG00000028688.14|target of EGR1, member 1 (nuclear)	ENSMUST00000030451.10|Toe1|ENSMUSG00000028688.14|target of EGR1, member 1 (nuclear)
mm39_v1_chr12_-_56392646_56392679	0.030373726101981243	AUAAAGU	ENSMUST00000021416.9|Mbip|ENSMUSG00000021028.9|MAP3K12 binding inhibitory protein 1
mm39_v1_chr18_+_4634878_4634974	0.030293649060009205	AUAAAGU	ENSMUST00000037029.7|Jcad|ENSMUSG00000033960.7|junctional cadherin 5 associated
mm39_v1_chr18_+_36414122_36414204	0.03019857414722437	AUAAAGU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr9_-_75316625_75316668	0.02938626500483135	AUAAAGU	ENSMUST00000168937.8|Mapk6|ENSMUSG00000042688.17|mitogen-activated protein kinase 6
mm39_v1_chr9_+_107464841_107464855	0.02922028860121076	AUAAAGU	ENSMUST00000010192.11|Ifrd2|ENSMUSG00000010048.11|interferon-related developmental regulator 2
mm39_v1_chr6_+_47854138_47854138	0.028960495703865826	AUAAAGU	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chr4_-_101122433_101122479	0.028201276699092424	AUAAAGU	ENSMUST00000149297.2|Jak1|ENSMUSG00000028530.15|Janus kinase 1	ENSMUST00000102781.10|Jak1|ENSMUSG00000028530.15|Janus kinase 1
mm39_v1_chr16_-_31019967_31020064	0.02819751659005734	AUAAAGU	ENSMUST00000230614.2|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	ENSMUST00000058033.9|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm39_v1_chr1_-_181669891_181669949	0.02812874095233759	AUAAAGU	ENSMUST00000193028.2|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000191878.6|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000005003.12|Lbr|ENSMUSG00000004880.12|lamin B receptor
mm39_v1_chr2_+_103858168_103858213	0.02799021595560442	AUAAAGU	ENSMUST00000111135.8|Fbxo3|ENSMUSG00000027180.13|F-box protein 3	ENSMUST00000111136.8|Fbxo3|ENSMUSG00000027180.13|F-box protein 3	ENSMUST00000102565.4|Fbxo3|ENSMUSG00000027180.13|F-box protein 3
mm39_v1_chr1_-_168259465_168259474	0.02786054281173677	AUAAAGU	ENSMUST00000176540.8|Pbx1|ENSMUSG00000052534.16|pre B cell leukemia homeobox 1
mm39_v1_chrX_+_135950334_135950415	0.026624296635218588	AUAAAGU	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr11_-_60111391_60111458	0.026261819484939632	AUAAAGU	ENSMUST00000020846.8|Srebf1|ENSMUSG00000020538.16|sterol regulatory element binding transcription factor 1
mm39_v1_chr11_+_21189277_21189308	0.026091363971151662	AUAAAGU	ENSMUST00000109578.8|Vps54|ENSMUSG00000020128.16|VPS54 GARP complex subunit	ENSMUST00000006221.14|Vps54|ENSMUSG00000020128.16|VPS54 GARP complex subunit
mm39_v1_chr14_-_49304110_49304132	0.025738881511279323	AUAAAGU	ENSMUST00000162175.9|Exoc5|ENSMUSG00000061244.15|exocyst complex component 5
mm39_v1_chr1_-_181039509_181039580	0.025585104801539353	AUAAAGU	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr10_+_96452860_96452877	0.025214745874576533	AUAAAGU	ENSMUST00000038377.9|Btg1|ENSMUSG00000036478.9|BTG anti-proliferation factor 1
mm39_v1_chrX_-_163763273_163763333	0.025099610967151787	AUAAAGU	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr1_+_66507523_66507606	0.02492474703043905	AUAAAGU	ENSMUST00000061620.17|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator	ENSMUST00000212557.3|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator
mm39_v1_chr19_-_7460600_7460651	0.024788139521583364	AUAAAGU	ENSMUST00000235593.2|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000088171.12|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000065304.13|Rtn3|ENSMUSG00000024758.16|reticulon 3	ENSMUST00000025667.14|Rtn3|ENSMUSG00000024758.16|reticulon 3
mm39_v1_chr14_-_10185523_10185590	0.024706218455363044	AUAAAGU	ENSMUST00000223702.2|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene	ENSMUST00000223762.2|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene	ENSMUST00000112669.10|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene	ENSMUST00000163392.3|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene
mm39_v1_chr14_+_29690265_29690320	0.02438411067418198	AUAAAGU	ENSMUST00000112268.4|Selenok|ENSMUSG00000042682.11|selenoprotein K
mm39_v1_chr11_+_60428788_60428810	0.024345594894642508	AUAAAGU	ENSMUST00000044250.4|Alkbh5|ENSMUSG00000042650.4|alkB homolog 5, RNA demethylase
mm39_v1_chr2_-_60793536_60793595	0.024208153487759884	AUAAAGU	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr1_-_93406515_93406544	0.023784832425947925	AUAAAGU	ENSMUST00000170883.8|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein	ENSMUST00000189025.7|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chr4_+_11191726_11191790	0.02374336019327613	AUAAAGU	ENSMUST00000029866.16|Ccne2|ENSMUSG00000028212.17|cyclin E2	ENSMUST00000108324.4|Ccne2|ENSMUSG00000028212.17|cyclin E2
mm39_v1_chr5_+_123214332_123214418	0.02370700930825687	AUAAAGU	ENSMUST00000067505.15|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000111619.10|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B	ENSMUST00000160344.2|Tmem120b|ENSMUSG00000054434.15|transmembrane protein 120B
mm39_v1_chr7_+_18737944_18738025	0.023673578296462886	AUAAAGU	ENSMUST00000053713.5|Irf2bp1|ENSMUSG00000044030.5|interferon regulatory factor 2 binding protein 1
mm39_v1_chr3_-_63872189_63872208	0.023609670343770903	AUAAAGU	ENSMUST00000029402.15|Slc33a1|ENSMUSG00000027822.17|solute carrier family 33 (acetyl-CoA transporter), member 1
mm39_v1_chr3_+_108191398_108191458	0.02350671379068246	AUAAAGU	ENSMUST00000135636.6|Sort1|ENSMUSG00000068747.15|sortilin 1	ENSMUST00000102632.7|Sort1|ENSMUSG00000068747.15|sortilin 1
mm39_v1_chr9_-_103569984_103570011	0.023214733739320974	AUAAAGU	ENSMUST00000049452.15|Tmem108|ENSMUSG00000042757.17|transmembrane protein 108
mm39_v1_chr17_+_57556449_57556548	0.02319460444961931	AUAAAGU	ENSMUST00000224947.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000019631.11|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000224885.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10	ENSMUST00000224152.2|Trip10|ENSMUSG00000019487.12|thyroid hormone receptor interactor 10
mm39_v1_chr2_+_120970888_120970946	0.02265886707334805	AUAAAGU	ENSMUST00000028702.10|Adal|ENSMUSG00000027259.16|adenosine deaminase-like	ENSMUST00000110665.8|Adal|ENSMUSG00000027259.16|adenosine deaminase-like
mm39_v1_chr9_+_114560235_114560308	0.022548739875775742	AUAAAGU	ENSMUST00000035007.10|Cmtm6|ENSMUSG00000032434.10|CKLF-like MARVEL transmembrane domain containing 6
mm39_v1_chr4_+_122730027_122730053	0.02254646497388316	AUAAAGU	ENSMUST00000030412.11|Ppt1|ENSMUSG00000028657.15|palmitoyl-protein thioesterase 1	ENSMUST00000121870.8|Ppt1|ENSMUSG00000028657.15|palmitoyl-protein thioesterase 1	ENSMUST00000097902.5|Ppt1|ENSMUSG00000028657.15|palmitoyl-protein thioesterase 1
mm39_v1_chr15_+_100125693_100125705	0.021398445809807726	AUAAAGU	ENSMUST00000023769.11|Atf1|ENSMUSG00000023027.14|activating transcription factor 1
mm39_v1_chr8_+_88845375_88845405	0.021363454847306097	AUAAAGU	ENSMUST00000095214.10|Cnep1r1|ENSMUSG00000036810.17|CTD nuclear envelope phosphatase 1 regulatory subunit 1
mm39_v1_chr18_-_39623698_39623771	0.021188969906381798	AUAAAGU	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr4_+_86792633_86792676	0.02090517420786857	AUAAAGU	ENSMUST00000045224.14|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2	ENSMUST00000084433.5|Acer2|ENSMUSG00000038007.15|alkaline ceramidase 2
mm39_v1_chr6_-_52135261_52135332	0.02058777956203503	AUAAAGU	ENSMUST00000000964.6|Hoxa1|ENSMUSG00000029844.10|homeobox A1	ENSMUST00000120363.2|Hoxa1|ENSMUSG00000029844.10|homeobox A1
mm39_v1_chr6_+_21949570_21949684	0.020514536720713978	AUAAAGU	ENSMUST00000031680.10|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000115389.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000151473.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3
mm39_v1_chr7_-_140752726_140752775	0.020499852032191457	AUAAAGU	ENSMUST00000167493.9|Rnh1|ENSMUSG00000038650.16|ribonuclease/angiogenin inhibitor 1
mm39_v1_chr19_+_56536685_56536716	0.020239689293188822	AUAAAGU	ENSMUST00000071423.7|Nhlrc2|ENSMUSG00000025078.10|NHL repeat containing 2
mm39_v1_chr3_+_135531409_135531425	0.020176883316751652	AUAAAGU	ENSMUST00000180196.8|Slc39a8|ENSMUSG00000053897.16|solute carrier family 39 (metal ion transporter), member 8
mm39_v1_chr11_-_82719850_82719869	0.0197846598044251	AUAAAGU	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr18_+_64473091_64473114	0.019705556463993686	AUAAAGU	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr8_+_79755194_79755242	0.01965242390222524	AUAAAGU	ENSMUST00000119254.8|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827	ENSMUST00000238669.2|Zfp827|ENSMUSG00000071064.16|zinc finger protein 827
mm39_v1_chr1_+_184936306_184936383	0.019338833490168857	AUAAAGU	ENSMUST00000194740.6|Rab3gap2|ENSMUSG00000039318.13|RAB3 GTPase activating protein subunit 2	ENSMUST00000069652.8|Rab3gap2|ENSMUSG00000039318.13|RAB3 GTPase activating protein subunit 2
mm39_v1_chr1_-_40829801_40829850	0.019309078583187773	AUAAAGU	ENSMUST00000039672.6|Mfsd9|ENSMUSG00000041945.13|major facilitator superfamily domain containing 9
mm39_v1_chr16_-_50252703_50252772	0.01922397585374719	AUAAAGU	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr6_-_97182509_97182608	0.018914443102336906	AUAAAGU	ENSMUST00000164744.8|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3	ENSMUST00000089287.7|Uba3|ENSMUSG00000030061.17|ubiquitin-like modifier activating enzyme 3
mm39_v1_chrX_-_56384089_56384140	0.01889892438412187	AUAAAGU	ENSMUST00000033468.11|Arhgef6|ENSMUSG00000031133.13|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
mm39_v1_chr9_+_35332837_35332913	0.018845115345652256	AUAAAGU	ENSMUST00000119129.10|Cdon|ENSMUSG00000038119.16|cell adhesion molecule-related/down-regulated by oncogenes
mm39_v1_chr2_-_112198366_112198381	0.01814086004382905	AUAAAGU	ENSMUST00000028551.4|Emc4|ENSMUSG00000027131.4|ER membrane protein complex subunit 4
mm39_v1_chr8_-_47805383_47805401	0.018139793723205285	AUAAAGU	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr7_+_120276801_120276868	0.017142311268073144	AUAAAGU	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr2_-_167032068_167032093	0.017000007388780054	AUAAAGU	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr10_+_71183571_71183593	0.016814940215189214	AUAAAGU	ENSMUST00000079252.13|Ipmk|ENSMUSG00000060733.14|inositol polyphosphate multikinase
mm39_v1_chr19_+_32734884_32734900	0.01669837963503026	AUAAAGU	ENSMUST00000013807.8|Pten|ENSMUSG00000013663.8|phosphatase and tensin homolog
mm39_v1_chr5_-_3852857_3852925	0.016423927615408562	AUAAAGU	ENSMUST00000043551.11|Ankib1|ENSMUSG00000040351.12|ankyrin repeat and IBR domain containing 1
mm39_v1_chr3_+_145281941_145282091	0.01622881987679853	AUAAAGU	ENSMUST00000199033.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000098534.9|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000200574.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000196413.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000197604.3|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6
mm39_v1_chr11_-_100510992_100511036	0.01606932378028181	AUAAAGU	ENSMUST00000014339.15|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239490.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239410.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7
mm39_v1_chr5_-_135280063_135280134	0.01605789312023545	AUAAAGU	ENSMUST00000062572.3|Fzd9|ENSMUSG00000049551.3|frizzled class receptor 9
mm39_v1_chr7_-_81479179_81479262	0.015876181483187007	AUAAAGU	ENSMUST00000026093.9|Btbd1|ENSMUSG00000025103.9|BTB (POZ) domain containing 1
mm39_v1_chr2_-_127634387_127634425	0.01586400918280421	AUAAAGU	ENSMUST00000135091.2|Mtln|ENSMUSG00000051319.7|mitoregulin
mm39_v1_chr4_+_34614939_34615002	0.01567818858733339	AUAAAGU	ENSMUST00000029968.14|Rars2|ENSMUSG00000028292.15|arginyl-tRNA synthetase 2, mitochondrial	ENSMUST00000148519.3|Rars2|ENSMUSG00000028292.15|arginyl-tRNA synthetase 2, mitochondrial
mm39_v1_chr2_+_155617251_155617313	0.015660356518238175	AUAAAGU	ENSMUST00000029141.6|Mmp24|ENSMUSG00000027612.8|matrix metallopeptidase 24
mm39_v1_chr10_-_53951825_53951892	0.015590937213928362	AUAAAGU	ENSMUST00000003843.16|Man1a|ENSMUSG00000003746.17|mannosidase 1, alpha
mm39_v1_chr7_+_73025243_73025299	0.015353763011428276	AUAAAGU	ENSMUST00000119206.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000094312.12|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr8_-_61436249_61436353	0.015353026057540992	AUAAAGU	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr15_+_40518414_40518450	0.014965382406513012	AUAAAGU	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr14_-_54891073_54891159	0.014910328191538874	AUAAAGU	ENSMUST00000126166.8|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1	ENSMUST00000141453.8|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1	ENSMUST00000150371.8|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1	ENSMUST00000123875.2|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1	ENSMUST00000022794.14|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1	ENSMUST00000148754.10|Acin1|ENSMUSG00000022185.20|apoptotic chromatin condensation inducer 1
mm39_v1_chr10_-_123032821_123032868	0.014801522464294187	AUAAAGU	ENSMUST00000219619.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15	ENSMUST00000020334.9|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr15_-_99603371_99603371	0.014774516798077064	AUAAAGU	ENSMUST00000163472.3|Gm17349|ENSMUSG00000091604.3|predicted gene, 17349
mm39_v1_chr1_+_132345293_132345348	0.01476125556100422	AUAAAGU	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr9_+_69896748_69896821	0.01469278590683461	AUAAAGU	ENSMUST00000034754.12|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000085393.13|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2	ENSMUST00000117450.8|Bnip2|ENSMUSG00000011958.18|BCL2/adenovirus E1B interacting protein 2
mm39_v1_chr7_+_44813363_44813448	0.014681093177510263	AUAAAGU	ENSMUST00000085374.7|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	ENSMUST00000209634.2|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm39_v1_chr7_-_115837034_115837056	0.01460020704937146	AUAAAGU	ENSMUST00000182834.8|Plekha7|ENSMUSG00000045659.19|pleckstrin homology domain containing, family A member 7
mm39_v1_chr3_-_69034425_69034446	0.014346257001749668	AUAAAGU	ENSMUST00000194558.6|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4	ENSMUST00000029353.9|Kpna4|ENSMUSG00000027782.11|karyopherin (importin) alpha 4
mm39_v1_chr13_+_111822712_111822745	0.014131384747148009	AUAAAGU	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chrX_-_103244784_103244810	0.014130419643605898	AUAAAGU	ENSMUST00000118314.8|Nexmif|ENSMUSG00000046449.16|neurite extension and migration factor
mm39_v1_chr19_-_24533183_24533253	0.014093467976329897	AUAAAGU	ENSMUST00000112673.9|Pip5k1b|ENSMUSG00000024867.15|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	ENSMUST00000025800.15|Pip5k1b|ENSMUSG00000024867.15|phosphatidylinositol-4-phosphate 5-kinase, type 1 beta
mm39_v1_chr18_+_76374651_76374804	0.014061915812578823	AUAAAGU	ENSMUST00000168423.9|Smad2|ENSMUSG00000024563.17|SMAD family member 2	ENSMUST00000091831.13|Smad2|ENSMUSG00000024563.17|SMAD family member 2
mm39_v1_chr1_-_54233207_54233207	0.013928155193892452	AUAAAGU	ENSMUST00000120904.8|Hecw2|ENSMUSG00000042807.16|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr11_-_80670815_80670871	0.01381077252196666	AUAAAGU	ENSMUST00000041065.14|Myo1d|ENSMUSG00000035441.15|myosin ID	ENSMUST00000070997.6|Myo1d|ENSMUSG00000035441.15|myosin ID
mm39_v1_chr1_+_194302123_194302141	0.013732282734344564	AUAAAGU	ENSMUST00000027952.12|Plxna2|ENSMUSG00000026640.13|plexin A2
mm39_v1_chr6_-_145811028_145811085	0.013650351255016497	AUAAAGU	ENSMUST00000111703.2|Bhlhe41|ENSMUSG00000030256.12|basic helix-loop-helix family, member e41
mm39_v1_chr7_-_118091135_118091198	0.013597054463841728	AUAAAGU	ENSMUST00000178344.3|Itpripl2|ENSMUSG00000095115.3|inositol 1,4,5-triphosphate receptor interacting protein-like 2
mm39_v1_chrX_-_156351979_156351987	0.013570632850544892	AUAAAGU	ENSMUST00000065806.5|Yy2|ENSMUSG00000091736.4|Yy2 transcription factor
mm39_v1_chr5_+_75312939_75312967	0.013546381737031203	AUAAAGU	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr4_+_139302009_139302036	0.013528982458266336	AUAAAGU	ENSMUST00000174078.2|Iffo2|ENSMUSG00000041025.16|intermediate filament family orphan 2
mm39_v1_chr5_+_124939739_124939836	0.013522852844115111	AUAAAGU	ENSMUST00000111417.9|Zfp664|ENSMUSG00000079215.9|zinc finger protein 664
mm39_v1_chr16_+_31482745_31482857	0.01331068290732621	AUAAAGU	ENSMUST00000100001.10|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1	ENSMUST00000064477.14|Dlg1|ENSMUSG00000022770.18|discs large MAGUK scaffold protein 1
mm39_v1_chr5_+_20112500_20112549	0.013273895646600859	AUAAAGU	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr4_-_132459762_132459874	0.013124802300781295	AUAAAGU	ENSMUST00000045550.5|Xkr8|ENSMUSG00000037752.5|X-linked Kx blood group related 8
mm39_v1_chr2_+_32496990_32497068	0.013111235409969718	AUAAAGU	ENSMUST00000095045.9|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	ENSMUST00000095044.10|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	ENSMUST00000126636.8|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm39_v1_chr16_-_32065972_32065997	0.01299836580136464	AUAAAGU	ENSMUST00000042732.6|Fbxo45|ENSMUSG00000035764.6|F-box protein 45
mm39_v1_chr8_-_84184978_84184994	0.012763442168201005	AUAAAGU	ENSMUST00000081506.11|Scoc|ENSMUSG00000063253.12|short coiled-coil protein
mm39_v1_chr6_-_86503178_86503303	0.012580707682672804	AUAAAGU	ENSMUST00000053015.7|Pcbp1|ENSMUSG00000051695.7|poly(rC) binding protein 1
mm39_v1_chr14_-_75991903_75992003	0.012491063277178674	AUAAAGU	ENSMUST00000049168.9|Cog3|ENSMUSG00000034893.10|component of oligomeric golgi complex 3
mm39_v1_chr2_-_114031897_114031950	0.012426789726713999	AUAAAGU	ENSMUST00000050668.4|Zfp770|ENSMUSG00000040321.4|zinc finger protein 770
mm39_v1_chr2_+_59442378_59442453	0.012336780749962103	AUAAAGU	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr4_+_48045143_48045160	0.012320583956338569	AUAAAGU	ENSMUST00000030025.10|Nr4a3|ENSMUSG00000028341.10|nuclear receptor subfamily 4, group A, member 3
mm39_v1_chr15_-_88618391_88618444	0.012214425104763633	AUAAAGU	ENSMUST00000109381.9|Brd1|ENSMUSG00000022387.18|bromodomain containing 1
mm39_v1_chr12_+_8724129_8724150	0.012190332741179128	AUAAAGU	ENSMUST00000111123.9|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000178015.8|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2	ENSMUST00000020915.10|Pum2|ENSMUSG00000020594.15|pumilio RNA-binding family member 2
mm39_v1_chr16_-_85698679_85698716	0.01213116915691702	AUAAAGU	ENSMUST00000023611.7|Adamts5|ENSMUSG00000022894.7|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm39_v1_chr12_+_64964674_64964776	0.011674656271577441	AUAAAGU	ENSMUST00000058135.6|Gm527|ENSMUSG00000047227.6|predicted gene 527	ENSMUST00000220993.2|Gm527|ENSMUSG00000047227.6|predicted gene 527
mm39_v1_chr11_-_85125889_85125963	0.011635148290197092	AUAAAGU	ENSMUST00000018625.10|Appbp2|ENSMUSG00000018481.10|amyloid beta precursor protein (cytoplasmic tail) binding protein 2
mm39_v1_chr1_+_58432021_58432057	0.011604445446693881	AUAAAGU	ENSMUST00000050552.15|Bzw1|ENSMUSG00000051223.15|basic leucine zipper and W2 domains 1
mm39_v1_chrX_-_7054952_7054981	0.011265948493263178	AUAAAGU	ENSMUST00000004428.14|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr4_-_110144676_110144731	0.011233455059562717	AUAAAGU	ENSMUST00000106598.8|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000102723.11|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4	ENSMUST00000153906.2|Elavl4|ENSMUSG00000028546.18|ELAV like RNA binding protein 4
mm39_v1_chrX_+_138585728_138585833	0.011228851748761457	AUAAAGU	ENSMUST00000096313.4|Tbc1d8b|ENSMUSG00000042473.9|TBC1 domain family, member 8B
mm39_v1_chr3_-_115508680_115508721	0.010816447386390971	AUAAAGU	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr2_-_155534295_155534308	0.010754702376163194	AUAAAGU	ENSMUST00000041059.12|Trpc4ap|ENSMUSG00000038324.14|transient receptor potential cation channel, subfamily C, member 4 associated protein
mm39_v1_chr10_-_31485180_31485180	0.010644909820269796	AUAAAGU	ENSMUST00000081989.8|Rnf217|ENSMUSG00000063760.10|ring finger protein 217
mm39_v1_chr3_-_138195133_138195276	0.010440571197649628	AUAAAGU	ENSMUST00000197531.2|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1	ENSMUST00000029804.13|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1
mm39_v1_chrX_+_158038778_158038894	0.010411879411921308	AUAAAGU	ENSMUST00000126686.8|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3	ENSMUST00000033671.13|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr6_+_83302998_83303046	0.01036227504847005	AUAAAGU	ENSMUST00000055261.11|Mob1a|ENSMUSG00000043131.15|MOB kinase activator 1A
mm39_v1_chrX_-_47123719_47123736	0.010293598277917086	AUAAAGU	ENSMUST00000039026.8|Apln|ENSMUSG00000037010.8|apelin
mm39_v1_chr19_-_16758268_16758340	0.010215316902288378	AUAAAGU	ENSMUST00000068156.8|Vps13a|ENSMUSG00000046230.12|vacuolar protein sorting 13A
mm39_v1_chr2_+_69619967_69619988	0.01010873307189873	AUAAAGU	ENSMUST00000151298.8|Phospho2|ENSMUSG00000027088.11|phosphatase, orphan 2	ENSMUST00000028494.9|Phospho2|ENSMUSG00000027088.11|phosphatase, orphan 2
mm39_v1_chr2_-_23045876_23046036	0.010108419391844597	AUAAAGU	ENSMUST00000028119.7|Mastl|ENSMUSG00000026779.7|microtubule associated serine/threonine kinase-like
mm39_v1_chr1_+_55276336_55276414	0.00990712798232489	AUAAAGU	ENSMUST00000061334.10|Mars2|ENSMUSG00000046994.10|methionine-tRNA synthetase 2 (mitochondrial)
mm39_v1_chr5_-_53370761_53370826	0.00966132217059708	AUAAAGU	ENSMUST00000031090.8|Sel1l3|ENSMUSG00000029189.11|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm39_v1_chr18_+_21134302_21134398	0.009609519066641616	AUAAAGU	ENSMUST00000234107.2|Rnf138|ENSMUSG00000024317.16|ring finger protein 138	ENSMUST00000072847.12|Rnf138|ENSMUSG00000024317.16|ring finger protein 138
mm39_v1_chr7_+_109617456_109617481	0.00950799749027248	AUAAAGU	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr5_+_115769960_115769992	0.00939233380287513	AUAAAGU	ENSMUST00000031492.15|Rab35|ENSMUSG00000029518.16|RAB35, member RAS oncogene family
mm39_v1_chr2_+_152068729_152068828	0.00911358717599755	AUAAAGU	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr16_+_91855158_91855216	0.009108137616420252	AUAAAGU	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr12_+_29578354_29578468	0.008979034850063418	AUAAAGU	ENSMUST00000218583.2|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like	ENSMUST00000049784.17|Myt1l|ENSMUSG00000061911.16|myelin transcription factor 1-like
mm39_v1_chr10_-_107321938_107321995	0.008912324429902349	AUAAAGU	ENSMUST00000000445.2|Myf5|ENSMUSG00000000435.2|myogenic factor 5
mm39_v1_chr8_-_80784619_80784646	0.008891225999861295	AUAAAGU	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr17_-_81035453_81035522	0.008453422866198672	AUAAAGU	ENSMUST00000234133.2|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000112389.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3	ENSMUST00000025089.9|Map4k3|ENSMUSG00000024242.16|mitogen-activated protein kinase kinase kinase kinase 3
mm39_v1_chr14_+_103887644_103887679	0.008080130476288716	AUAAAGU	ENSMUST00000069443.14|Slain1|ENSMUSG00000055717.14|SLAIN motif family, member 1
mm39_v1_chr2_+_129642371_129642493	0.00803533579127009	AUAAAGU	ENSMUST00000165413.9|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35	ENSMUST00000166282.3|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35
mm39_v1_chr2_-_23462052_23462124	0.00803289889296648	AUAAAGU	ENSMUST00000132484.7|Spopl|ENSMUSG00000026771.15|speckle-type BTB/POZ protein-like
mm39_v1_chr5_-_31377847_31378031	0.007780915878923097	AUAAAGU	ENSMUST00000202294.4|Ppm1g|ENSMUSG00000029147.12|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	ENSMUST00000031032.11|Ppm1g|ENSMUSG00000029147.12|protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
mm39_v1_chr12_-_80483343_80483379	0.007737338019602551	AUAAAGU	ENSMUST00000054145.8|Dcaf5|ENSMUSG00000049106.8|DDB1 and CUL4 associated factor 5
mm39_v1_chr4_-_87148672_87148714	0.00752037819913323	AUAAAGU	ENSMUST00000107157.9|Slc24a2|ENSMUSG00000037996.18|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm39_v1_chr12_-_14202041_14202070	0.007436873303973897	AUAAAGU	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr19_+_10366753_10366847	0.007222957058448433	AUAAAGU	ENSMUST00000169121.9|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000076968.11|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000235479.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000223586.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000235784.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000224135.3|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000225452.3|Syt7|ENSMUSG00000024743.17|synaptotagmin VII	ENSMUST00000237366.2|Syt7|ENSMUSG00000024743.17|synaptotagmin VII
mm39_v1_chr12_-_12991828_12991915	0.007181915932918343	AUAAAGU	ENSMUST00000043396.15|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr12_-_75224099_75224133	0.007071537240453284	AUAAAGU	ENSMUST00000042299.4|Kcnh5|ENSMUSG00000034402.4|potassium voltage-gated channel, subfamily H (eag-related), member 5
mm39_v1_chr14_-_67309866_67309925	0.006999032793263615	AUAAAGU	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr7_+_90739904_90739959	0.0069444826715156305	AUAAAGU	ENSMUST00000107196.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2	ENSMUST00000074273.10|Dlg2|ENSMUSG00000052572.20|discs large MAGUK scaffold protein 2
mm39_v1_chr11_+_95010935_95010954	0.00678052919187784	AUAAAGU	ENSMUST00000092768.7|Dlx3|ENSMUSG00000001510.9|distal-less homeobox 3
mm39_v1_chr2_+_133394079_133394157	0.0067605389857607456	AUAAAGU	ENSMUST00000028836.7|Bmp2|ENSMUSG00000027358.7|bone morphogenetic protein 2
mm39_v1_chr1_-_25267894_25267916	0.0066588610417502875	AUAAAGU	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr10_-_121883196_121883227	0.0065542273685289315	AUAAAGU	ENSMUST00000020322.12|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1	ENSMUST00000081688.13|Srgap1|ENSMUSG00000020121.16|SLIT-ROBO Rho GTPase activating protein 1
mm39_v1_chr7_-_28661751_28661765	0.006364935579558247	AUAAAGU	ENSMUST00000068045.14|Actn4|ENSMUSG00000054808.16|actinin alpha 4	ENSMUST00000217157.2|Actn4|ENSMUSG00000054808.16|actinin alpha 4
mm39_v1_chr3_+_58322119_58322161	0.006275502668464716	AUAAAGU	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr6_-_84570890_84570903	0.006202345000557867	AUAAAGU	ENSMUST00000168003.9|Cyp26b1|ENSMUSG00000063415.13|cytochrome P450, family 26, subfamily b, polypeptide 1
mm39_v1_chr8_+_85558151_85558151	0.005974136736356446	AUAAAGU	ENSMUST00000036734.6|Gadd45gip1|ENSMUSG00000033751.6|growth arrest and DNA-damage-inducible, gamma interacting protein 1
mm39_v1_chr3_+_20111958_20112024	0.005775380863191279	AUAAAGU	ENSMUST00000002502.12|Hltf|ENSMUSG00000002428.13|helicase-like transcription factor
mm39_v1_chr5_-_148489457_148489498	0.005588492589182632	AUAAAGU	ENSMUST00000079324.14|Ubl3|ENSMUSG00000001687.16|ubiquitin-like 3
mm39_v1_chr6_-_42301574_42301606	0.005240374031631608	AUAAAGU	ENSMUST00000031891.15|Fam131b|ENSMUSG00000029861.18|family with sequence similarity 131, member B	ENSMUST00000143278.8|Fam131b|ENSMUSG00000029861.18|family with sequence similarity 131, member B
mm39_v1_chr16_-_4950285_4950347	0.005202501476531855	AUAAAGU	ENSMUST00000035672.5|Ppl|ENSMUSG00000039457.5|periplakin
mm39_v1_chr8_-_122379631_122379652	0.005128443228926314	AUAAAGU	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr2_-_37537224_37537297	0.00512515287575564	AUAAAGU	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr9_+_121589044_121589127	0.005038456893479352	AUAAAGU	ENSMUST00000093772.4|Zfp651|ENSMUSG00000013419.8|zinc finger protein 651
mm39_v1_chr2_-_113883285_113883368	0.004791473726488449	AUAAAGU	ENSMUST00000090269.7|Actc1|ENSMUSG00000068614.8|actin, alpha, cardiac muscle 1
mm39_v1_chr4_+_58285957_58285975	0.004752470540512163	AUAAAGU	ENSMUST00000081919.12|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000177951.8|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000098059.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000179951.2|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000102893.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000084578.12|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase	ENSMUST00000098057.10|Musk|ENSMUSG00000057280.16|muscle, skeletal, receptor tyrosine kinase
mm39_v1_chr1_-_170695328_170695354	0.004589642918449292	AUAAAGU	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr12_-_100691251_100691287	0.004501082023870695	AUAAAGU	ENSMUST00000043599.7|Rps6ka5|ENSMUSG00000021180.10|ribosomal protein S6 kinase, polypeptide 5
mm39_v1_chr1_-_189902868_189902942	0.004477781449952163	AUAAAGU	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr8_-_41586713_41586793	0.004469809523448151	AUAAAGU	ENSMUST00000155055.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000059115.13|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1	ENSMUST00000145860.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr2_-_171885386_171885386	0.004447732311720183	AUAAAGU	ENSMUST00000087950.4|Cbln4|ENSMUSG00000067578.4|cerebellin 4 precursor protein
mm39_v1_chr13_-_100753419_100753490	0.0043372446488586834	AUAAAGU	ENSMUST00000168772.2|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2	ENSMUST00000163163.9|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2	ENSMUST00000022137.14|Marveld2|ENSMUSG00000021636.16|MARVEL (membrane-associating) domain containing 2
mm39_v1_chr14_+_70314652_70314671	0.004318807476012261	AUAAAGU	ENSMUST00000035908.3|Egr3|ENSMUSG00000033730.5|early growth response 3
mm39_v1_chr15_-_48655329_48655459	0.0042790078314711355	AUAAAGU	ENSMUST00000160658.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000100670.10|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000162830.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3
mm39_v1_chr12_+_95658987_95659011	0.004261992449949599	AUAAAGU	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr16_-_28748410_28748457	0.004133102555681077	AUAAAGU	ENSMUST00000100023.3|Mb21d2|ENSMUSG00000051065.10|Mab-21 domain containing 2
mm39_v1_chr6_-_115971914_115971971	0.0041029103553741515	AUAAAGU	ENSMUST00000015511.15|Plxnd1|ENSMUSG00000030123.16|plexin D1
mm39_v1_chr12_-_51738666_51738738	0.004054620241876806	AUAAAGU	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr4_+_13743424_13743478	0.0038995052387945043	AUAAAGU	ENSMUST00000006761.10|Runx1t1|ENSMUSG00000006586.16|RUNX1 translocation partner 1
mm39_v1_chr6_-_100264439_100264461	0.0038251076957674093	AUAAAGU	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr7_-_73663422_73663446	0.003799690683535922	AUAAAGU	ENSMUST00000026896.10|St8sia2|ENSMUSG00000025789.10|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	ENSMUST00000191970.2|St8sia2|ENSMUSG00000025789.10|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm39_v1_chr11_-_120328458_120328558	0.0037948405878755237	AUAAAGU	ENSMUST00000044271.15|Nploc4|ENSMUSG00000039703.16|NPL4 homolog, ubiquitin recognition factor	ENSMUST00000103017.4|Nploc4|ENSMUSG00000039703.16|NPL4 homolog, ubiquitin recognition factor
mm39_v1_chr19_+_60800012_60800057	0.003756464232192607	AUAAAGU	ENSMUST00000128357.8|Dennd10|ENSMUSG00000024993.16|DENN domain containing 10	ENSMUST00000119633.8|Dennd10|ENSMUSG00000024993.16|DENN domain containing 10	ENSMUST00000025957.9|Dennd10|ENSMUSG00000024993.16|DENN domain containing 10
mm39_v1_chr2_-_115896279_115896334	0.0036824768413726275	AUAAAGU	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr1_-_75195889_75195938	0.003660859188654116	AUAAAGU	ENSMUST00000186213.7|Tuba4a|ENSMUSG00000026202.14|tubulin, alpha 4A
mm39_v1_chr2_+_106523532_106523624	0.0036242197076722755	AUAAAGU	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr18_+_37130860_37130933	0.0035609308287075504	AUAAAGU	ENSMUST00000115659.6|Pcdha9|ENSMUSG00000103770.2|protocadherin alpha 9
mm39_v1_chr1_+_7159134_7159217	0.0034272483666019176	AUAAAGU	ENSMUST00000061280.17|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	ENSMUST00000182114.8|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm39_v1_chr11_+_96242422_96242461	0.003399530906700815	AUAAAGU	ENSMUST00000100523.7|Hoxb2|ENSMUSG00000075588.7|homeobox B2
mm39_v1_chr13_+_46571910_46571986	0.003327948805271254	AUAAAGU	ENSMUST00000037923.5|Rbm24|ENSMUSG00000038132.7|RNA binding motif protein 24
mm39_v1_chr1_-_192538031_192538064	0.0032705452886563485	AUAAAGU	ENSMUST00000155579.8|Sertad4|ENSMUSG00000016262.15|SERTA domain containing 4
mm39_v1_chr5_-_24235646_24235705	0.003205991629484404	AUAAAGU	ENSMUST00000197617.5|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A	ENSMUST00000030849.13|Fam126a|ENSMUSG00000028995.15|family with sequence similarity 126, member A
mm39_v1_chr4_-_91260265_91260306	0.003181388826784817	AUAAAGU	ENSMUST00000107110.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000008633.15|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1	ENSMUST00000107118.8|Elavl2|ENSMUSG00000008489.19|ELAV like RNA binding protein 1
mm39_v1_chr10_+_87695117_87695128	0.003126465319737916	AUAAAGU	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr9_+_74944896_74944983	0.0031259879333031867	AUAAAGU	ENSMUST00000168166.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000169492.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19	ENSMUST00000170308.8|Arpp19|ENSMUSG00000007656.14|cAMP-regulated phosphoprotein 19
mm39_v1_chr19_-_21449916_21450036	0.003100866103512822	AUAAAGU	ENSMUST00000087600.10|Gda|ENSMUSG00000058624.14|guanine deaminase
mm39_v1_chr1_-_154602102_154602132	0.003093766477903038	AUAAAGU	ENSMUST00000187541.7|Cacna1e|ENSMUSG00000004110.18|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm39_v1_chr2_+_55327110_55327194	0.002863385678940443	AUAAAGU	ENSMUST00000112633.3|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3	ENSMUST00000112632.2|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr11_-_84416340_84416369	0.0028041383380997954	AUAAAGU	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr14_+_31058589_31058676	0.00277159649300966	AUAAAGU	ENSMUST00000022451.14|Capn7|ENSMUSG00000021893.15|calpain 7
mm39_v1_chr11_+_54194624_54194670	0.0027569095360611457	AUAAAGU	ENSMUST00000093106.12|Acsl6|ENSMUSG00000020333.18|acyl-CoA synthetase long-chain family member 6
mm39_v1_chr1_-_138770167_138770195	0.0027534768920223192	AUAAAGU	ENSMUST00000112026.4|Lhx9|ENSMUSG00000019230.15|LIM homeobox protein 9	ENSMUST00000019374.14|Lhx9|ENSMUSG00000019230.15|LIM homeobox protein 9
mm39_v1_chr16_-_4442802_4442852	0.0027393413094653025	AUAAAGU	ENSMUST00000014445.7|Pam16|ENSMUSG00000014301.14|presequence translocase-asssociated motor 16 homolog (S. cerevisiae)
mm39_v1_chr8_-_9821021_9821161	0.0026946946265051404	AUAAAGU	ENSMUST00000208933.2|Fam155a|ENSMUSG00000079157.5|family with sequence similarity 155, member A	ENSMUST00000110969.5|Fam155a|ENSMUSG00000079157.5|family with sequence similarity 155, member A
mm39_v1_chr11_+_64326141_64326164	0.002624416487983923	AUAAAGU	ENSMUST00000058652.6|Hs3st3a1|ENSMUSG00000047759.7|heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
mm39_v1_chrX_+_104807868_104807885	0.002606298929204583	AUAAAGU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr11_-_89193158_89193158	0.0026015223554025496	AUAAAGU	ENSMUST00000061728.5|Nog|ENSMUSG00000048616.5|noggin
mm39_v1_chr1_+_131838294_131838310	0.0025383189828622845	AUAAAGU	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr5_-_44956981_44957014	0.002478387804071024	AUAAAGU	ENSMUST00000070748.10|Ldb2|ENSMUSG00000039706.12|LIM domain binding 2
mm39_v1_chr3_-_104127676_104127695	0.002402918664387213	AUAAAGU	ENSMUST00000064371.14|Magi3|ENSMUSG00000052539.16|membrane associated guanylate kinase, WW and PDZ domain containing 3
mm39_v1_chrX_+_9751861_9751861	0.0023653813201928897	AUAAAGU	ENSMUST00000067529.9|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5	ENSMUST00000086165.4|Sytl5|ENSMUSG00000054453.12|synaptotagmin-like 5
mm39_v1_chr14_-_48902555_48902572	0.0023471680353774746	AUAAAGU	ENSMUST00000118578.9|Otx2|ENSMUSG00000021848.17|orthodenticle homeobox 2
mm39_v1_chr1_+_38037086_38037096	0.0022613101670124203	AUAAAGU	ENSMUST00000027252.8|Eif5b|ENSMUSG00000026083.13|eukaryotic translation initiation factor 5B
mm39_v1_chr3_-_59251573_59251677	0.002255208151893067	AUAAAGU	ENSMUST00000193455.6|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10	ENSMUST00000039419.12|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10	ENSMUST00000195983.2|Igsf10|ENSMUSG00000036334.13|immunoglobulin superfamily, member 10
mm39_v1_chr2_+_83642910_83642987	0.0022365507504107257	AUAAAGU	ENSMUST00000051454.4|Fam171b|ENSMUSG00000048388.4|family with sequence similarity 171, member B
mm39_v1_chr6_-_143892814_143892837	0.0022192481114416307	AUAAAGU	ENSMUST00000124233.7|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000144289.4|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111748.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr2_+_178056302_178056382	0.002203774772935989	AUAAAGU	ENSMUST00000094251.11|Fam217b|ENSMUSG00000070476.11|family with sequence similarity 217, member B
mm39_v1_chr7_+_3381434_3381471	0.002189203046610046	AUAAAGU	ENSMUST00000092891.6|Cacng7|ENSMUSG00000069806.6|calcium channel, voltage-dependent, gamma subunit 7
mm39_v1_chr7_+_54485336_54485363	0.002147904886396193	AUAAAGU	ENSMUST00000082373.8|Luzp2|ENSMUSG00000063297.8|leucine zipper protein 2
mm39_v1_chr11_-_99932373_99932387	0.002130963628332367	AUAAAGU	ENSMUST00000056362.3|Krt34|ENSMUSG00000043485.3|keratin 34
mm39_v1_chr10_-_40948275_40948286	0.002066648255762677	AUAAAGU	ENSMUST00000061796.8|Gpr6|ENSMUSG00000046922.8|G protein-coupled receptor 6
mm39_v1_chr19_-_5040344_5040344	0.001978374115101495	AUAAAGU	ENSMUST00000056129.9|Npas4|ENSMUSG00000045903.10|neuronal PAS domain protein 4
mm39_v1_chr3_-_81981946_81982023	0.0019246305419156281	AUAAAGU	ENSMUST00000029635.14|Gucy1b1|ENSMUSG00000028005.14|guanylate cyclase 1, soluble, beta 1	ENSMUST00000193597.2|Gucy1b1|ENSMUSG00000028005.14|guanylate cyclase 1, soluble, beta 1
mm39_v1_chr4_+_11156411_11156453	0.001887585780090605	AUAAAGU	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr9_-_66826928_66826992	0.0018476220808767462	AUAAAGU	ENSMUST00000041139.9|Rab8b|ENSMUSG00000036943.10|RAB8B, member RAS oncogene family
mm39_v1_chr5_-_123320767_123320794	0.0018310268693953725	AUAAAGU	ENSMUST00000154713.8|Hpd|ENSMUSG00000029445.14|4-hydroxyphenylpyruvic acid dioxygenase	ENSMUST00000031398.14|Hpd|ENSMUSG00000029445.14|4-hydroxyphenylpyruvic acid dioxygenase
mm39_v1_chr13_+_91889626_91889650	0.0018157581827903425	AUAAAGU	ENSMUST00000022120.5|Acot12|ENSMUSG00000021620.5|acyl-CoA thioesterase 12
mm39_v1_chr12_-_87346479_87346479	0.0016753903595583652	AUAAAGU	ENSMUST00000125733.8|Ism2|ENSMUSG00000050671.13|isthmin 2
mm39_v1_chr5_-_24628514_24628536	0.001668610732534674	AUAAAGU	ENSMUST00000030814.11|Cdk5|ENSMUSG00000028969.11|cyclin-dependent kinase 5
mm39_v1_chr5_+_81169049_81169093	0.0016493769410981243	AUAAAGU	ENSMUST00000117253.8|Adgrl3|ENSMUSG00000037605.17|adhesion G protein-coupled receptor L3	ENSMUST00000120128.8|Adgrl3|ENSMUSG00000037605.17|adhesion G protein-coupled receptor L3
mm39_v1_chr7_+_144415115_144415132	0.0016133951504932222	AUAAAGU	ENSMUST00000060336.5|Fgf4|ENSMUSG00000050917.6|fibroblast growth factor 4
mm39_v1_chr3_+_96432479_96432502	0.0013208984514842814	AUAAAGU	ENSMUST00000049208.11|Hjv|ENSMUSG00000038403.11|hemojuvelin BMP co-receptor
mm39_v1_chrX_+_12937714_12937797	0.001294402911618301	AUAAAGU	ENSMUST00000169594.9|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome	ENSMUST00000089302.11|Usp9x|ENSMUSG00000031010.18|ubiquitin specific peptidase 9, X chromosome
mm39_v1_chr2_+_74535242_74535258	0.0012608959601367892	AUAAAGU	ENSMUST00000019749.4|Hoxd8|ENSMUSG00000027102.5|homeobox D8
mm39_v1_chr14_-_58127698_58127777	0.0012246386465504548	AUAAAGU	ENSMUST00000089473.5|Zdhhc20|ENSMUSG00000021969.9|zinc finger, DHHC domain containing 20
mm39_v1_chr4_+_20008357_20008452	0.0011379717268983213	AUAAAGU	ENSMUST00000117632.8|Ttpa|ENSMUSG00000073988.14|tocopherol (alpha) transfer protein	ENSMUST00000098244.2|Ttpa|ENSMUSG00000073988.14|tocopherol (alpha) transfer protein
mm39_v1_chr3_-_154036180_154036296	0.0011219081486640579	AUAAAGU	ENSMUST00000177846.8|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
mm39_v1_chr10_-_70995485_70995537	0.0011192273767621824	AUAAAGU	ENSMUST00000014473.6|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1	ENSMUST00000143791.8|Bicc1|ENSMUSG00000014329.15|BicC family RNA binding protein 1
mm39_v1_chr3_+_82915031_82915175	0.001084843298800431	AUAAAGU	ENSMUST00000048486.13|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain	ENSMUST00000194175.2|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain
mm39_v1_chr19_-_34724689_34724713	0.0010781275760061476	AUAAAGU	ENSMUST00000009522.4|Slc16a12|ENSMUSG00000009378.5|solute carrier family 16 (monocarboxylic acid transporters), member 12
mm39_v1_chr18_+_70058533_70058608	0.001000313254762319	AUAAAGU	ENSMUST00000043929.11|Ccdc68|ENSMUSG00000038903.14|coiled-coil domain containing 68
mm39_v1_chr15_+_91949032_91949052	0.0008002940534733903	AUAAAGU	ENSMUST00000169825.8|Cntn1|ENSMUSG00000055022.15|contactin 1
mm39_v1_chr8_+_60958931_60958966	0.0007636764603831495	AUAAAGU	ENSMUST00000079472.4|Aadat|ENSMUSG00000057228.7|aminoadipate aminotransferase
mm39_v1_chr15_+_16778187_16778187	0.0007443544253633239	AUAAAGU	ENSMUST00000026432.8|Cdh9|ENSMUSG00000025370.8|cadherin 9
mm39_v1_chr1_+_67162176_67162196	0.0007361128080364647	AUAAAGU	ENSMUST00000027144.8|Cps1|ENSMUSG00000025991.9|carbamoyl-phosphate synthetase 1
mm39_v1_chr7_+_98484311_98484338	0.0007075310374366731	AUAAAGU	ENSMUST00000165122.8|Wnt11|ENSMUSG00000015957.13|wingless-type MMTV integration site family, member 11	ENSMUST00000067495.9|Wnt11|ENSMUSG00000015957.13|wingless-type MMTV integration site family, member 11
mm39_v1_chr13_-_41233104_41233182	0.0006851536088167287	AUAAAGU	ENSMUST00000070193.14|Mak|ENSMUSG00000021363.15|male germ cell-associated kinase	ENSMUST00000165087.8|Mak|ENSMUSG00000021363.15|male germ cell-associated kinase
mm39_v1_chr10_-_23225781_23225817	0.0006327202706979378	AUAAAGU	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr3_-_73615732_73615756	0.0005689802899632301	AUAAAGU	ENSMUST00000029367.6|Bche|ENSMUSG00000027792.12|butyrylcholinesterase
mm39_v1_chr2_-_156921135_156921196	0.00038255350654226895	AUAAAGU	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
mm39_v1_chr11_-_47270201_47270349	0.0003176141313405859	AUAAAGU	ENSMUST00000077221.6|Sgcd|ENSMUSG00000020354.16|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm39_v1_chr18_-_21785419_21785430	0.00015636493956304256	AUAAAGU	ENSMUST00000049105.11|Klhl14|ENSMUSG00000042514.12|kelch-like 14
mm39_v1_chr10_-_118130943_118130943	0.0001274291275939626	AUAAAGU	ENSMUST00000163808.2|Iltifb|ENSMUSG00000090461.3|interleukin 10-related T cell-derived inducible factor beta
mm39_v1_chr17_-_63188139_63188352	0.00012611762545276518	AUAAAGU	ENSMUST00000078839.5|Efna5|ENSMUSG00000048915.13|ephrin A5	ENSMUST00000076840.12|Efna5|ENSMUSG00000048915.13|ephrin A5
