mm39_v1_chr11_-_96668318_96668385	0.152086437659363	AUGUGCC	ENSMUST00000127375.2|Snx11|ENSMUSG00000020876.15|sorting nexin 11	ENSMUST00000021246.9|Snx11|ENSMUSG00000020876.15|sorting nexin 11	ENSMUST00000107661.10|Snx11|ENSMUSG00000020876.15|sorting nexin 11
mm39_v1_chrX_+_65692924_65693001	0.13637869670640115	AUGUGCC	ENSMUST00000166241.2|Slitrk2|ENSMUSG00000036790.6|SLIT and NTRK-like family, member 2
mm39_v1_chr5_+_108213608_108213634	0.1286443720269359	AUGUGCC	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr2_-_84481058_84481093	0.1162051220539827	AUGUGCC	ENSMUST00000111670.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111697.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111696.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111678.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111690.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111695.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111677.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111698.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000099941.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111676.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111694.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111675.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111689.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111687.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111692.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111685.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111686.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111688.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111693.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111684.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1
mm39_v1_chr11_-_117859997_117860018	0.10984461614242189	AUGUGCC	ENSMUST00000054002.4|Socs3|ENSMUSG00000053113.4|suppressor of cytokine signaling 3
mm39_v1_chr12_+_85645801_85645905	0.10741039366711809	AUGUGCC	ENSMUST00000177587.9|Jdp2|ENSMUSG00000034271.17|Jun dimerization protein 2
mm39_v1_chr12_-_80307110_80307145	0.10682260743945206	AUGUGCC	ENSMUST00000021554.16|Actn1|ENSMUSG00000015143.16|actinin, alpha 1
mm39_v1_chr17_-_74601769_74601801	0.10075230941901042	AUGUGCC	ENSMUST00000078459.8|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1	ENSMUST00000232989.2|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1
mm39_v1_chr8_-_105169621_105169679	0.09633154372752456	AUGUGCC	ENSMUST00000041769.8|Dync1li2|ENSMUSG00000035770.9|dynein, cytoplasmic 1 light intermediate chain 2
mm39_v1_chr4_+_97665843_97665870	0.09410034959699859	AUGUGCC	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr18_+_38552011_38552040	0.08757462962479662	AUGUGCC	ENSMUST00000025293.5|Ndfip1|ENSMUSG00000024425.5|Nedd4 family interacting protein 1
mm39_v1_chr1_-_75101826_75101855	0.08170135024931935	AUGUGCC	ENSMUST00000152855.3|Nhej1|ENSMUSG00000026162.9|non-homologous end joining factor 1
mm39_v1_chr5_-_67585137_67585157	0.07829067385355777	AUGUGCC	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr11_+_79883885_79883963	0.07679650118636902	AUGUGCC	ENSMUST00000163272.2|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit	ENSMUST00000017692.15|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit
mm39_v1_chr5_+_124678758_124678849	0.06808426369500882	AUGUGCC	ENSMUST00000060226.11|Tmed2|ENSMUSG00000029390.14|transmembrane p24 trafficking protein 2
mm39_v1_chr7_+_4463686_4463729	0.06684847466944006	AUGUGCC	ENSMUST00000167298.2|Eps8l1|ENSMUSG00000006154.14|EPS8-like 1	ENSMUST00000171445.8|Eps8l1|ENSMUSG00000006154.14|EPS8-like 1
mm39_v1_chr1_+_43484895_43484994	0.0652917345000275	AUGUGCC	ENSMUST00000086421.9|Nck2|ENSMUSG00000066877.12|non-catalytic region of tyrosine kinase adaptor protein 2
mm39_v1_chr9_-_103242096_103242164	0.06324095890086585	AUGUGCC	ENSMUST00000116517.9|Cdv3|ENSMUSG00000032803.16|carnitine deficiency-associated gene expressed in ventricle 3
mm39_v1_chr11_-_82781369_82781452	0.06300848780843872	AUGUGCC	ENSMUST00000092844.13|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000021033.16|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D	ENSMUST00000018985.15|Rad51d|ENSMUSG00000018841.18|RAD51 paralog D
mm39_v1_chr5_+_135216090_135216126	0.06276806166424628	AUGUGCC	ENSMUST00000002825.6|Baz1b|ENSMUSG00000002748.8|bromodomain adjacent to zinc finger domain, 1B
mm39_v1_chr17_+_64203017_64203059	0.06233330509465948	AUGUGCC	ENSMUST00000000129.14|Fer|ENSMUSG00000000127.16|fer (fms/fps related) protein kinase
mm39_v1_chr9_-_115139489_115139516	0.06074464124630859	AUGUGCC	ENSMUST00000035010.10|Stt3b|ENSMUSG00000032437.11|STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
mm39_v1_chr18_+_6765145_6765263	0.06060801335628438	AUGUGCC	ENSMUST00000234810.2|Rab18|ENSMUSG00000073639.7|RAB18, member RAS oncogene family	ENSMUST00000234626.2|Rab18|ENSMUSG00000073639.7|RAB18, member RAS oncogene family	ENSMUST00000097680.7|Rab18|ENSMUSG00000073639.7|RAB18, member RAS oncogene family
mm39_v1_chr18_+_68066328_68066378	0.06031064383670905	AUGUGCC	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr9_+_32607301_32607417	0.05931502107031411	AUGUGCC	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr18_-_77652820_77652858	0.056535576342983646	AUGUGCC	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr7_+_101859542_101859652	0.05607100043048988	AUGUGCC	ENSMUST00000140631.2|Pgap2|ENSMUSG00000030990.19|post-GPI attachment to proteins 2	ENSMUST00000120879.8|Pgap2|ENSMUSG00000030990.19|post-GPI attachment to proteins 2	ENSMUST00000146996.8|Pgap2|ENSMUSG00000030990.19|post-GPI attachment to proteins 2
mm39_v1_chr2_-_168048795_168048842	0.055323038884118485	AUGUGCC	ENSMUST00000057793.11|Adnp|ENSMUSG00000051149.16|activity-dependent neuroprotective protein
mm39_v1_chr7_+_109617456_109617481	0.05182240211729026	AUGUGCC	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr16_-_30207348_30207348	0.051388099919109066	AUGUGCC	ENSMUST00000061350.13|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3	ENSMUST00000100013.9|Atp13a3|ENSMUSG00000022533.15|ATPase type 13A3
mm39_v1_chr13_-_100969878_100969978	0.046872638929395326	AUGUGCC	ENSMUST00000067246.6|Slc30a5|ENSMUSG00000021629.11|solute carrier family 30 (zinc transporter), member 5
mm39_v1_chr3_+_157742299_157742365	0.046188855473112	AUGUGCC	ENSMUST00000072080.10|Lrrc40|ENSMUSG00000063052.10|leucine rich repeat containing 40
mm39_v1_chr8_-_58106057_58106074	0.04474680972203006	AUGUGCC	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr18_+_34910064_34910128	0.03650375918829898	AUGUGCC	ENSMUST00000043775.9|Kdm3b|ENSMUSG00000038773.12|KDM3B lysine (K)-specific demethylase 3B	ENSMUST00000224715.2|Kdm3b|ENSMUSG00000038773.12|KDM3B lysine (K)-specific demethylase 3B
mm39_v1_chr11_-_70910058_70910129	0.03504174579591162	AUGUGCC	ENSMUST00000108523.10|Derl2|ENSMUSG00000018442.14|Der1-like domain family, member 2	ENSMUST00000143850.8|Derl2|ENSMUSG00000018442.14|Der1-like domain family, member 2
mm39_v1_chr13_+_107083613_107083675	0.03407481822537135	AUGUGCC	ENSMUST00000022203.10|Dimt1|ENSMUSG00000021692.10|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
mm39_v1_chr6_-_119394634_119394668	0.031336055530331176	AUGUGCC	ENSMUST00000032272.13|Adipor2|ENSMUSG00000030168.14|adiponectin receptor 2
mm39_v1_chr5_+_129970882_129970968	0.030013285558967016	AUGUGCC	ENSMUST00000201855.2|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1	ENSMUST00000073945.6|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1
mm39_v1_chr5_+_122988111_122988228	0.02990318983311305	AUGUGCC	ENSMUST00000031434.8|Rnf34|ENSMUSG00000029474.8|ring finger protein 34	ENSMUST00000198602.2|Rnf34|ENSMUSG00000029474.8|ring finger protein 34
mm39_v1_chr11_-_95733235_95733275	0.028356404569545232	AUGUGCC	ENSMUST00000059026.10|Abi3|ENSMUSG00000018381.16|ABI family member 3
mm39_v1_chr8_-_117459730_117459824	0.026055426344485037	AUGUGCC	ENSMUST00000109102.4|Cdyl2|ENSMUSG00000031758.11|chromodomain protein, Y chromosome-like 2
mm39_v1_chr13_+_93444514_93444542	0.024121314667833776	AUGUGCC	ENSMUST00000079086.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr17_-_64638887_64638951	0.020849272042158373	AUGUGCC	ENSMUST00000172818.8|Pja2|ENSMUSG00000024083.17|praja ring finger ubiquitin ligase 2
mm39_v1_chr11_-_121245251_121245271	0.020802408420863318	AUGUGCC	ENSMUST00000026173.13|Wdr45b|ENSMUSG00000025173.14|WD repeat domain 45B
mm39_v1_chrX_+_13147209_13147270	0.019681703850540612	AUGUGCC	ENSMUST00000000804.7|Ddx3x|ENSMUSG00000000787.13|DEAD box helicase 3, X-linked
mm39_v1_chr2_-_84508385_84508462	0.017139652889306585	AUGUGCC	ENSMUST00000189772.2|Gm28635|ENSMUSG00000101645.2|predicted gene 28635	ENSMUST00000053664.9|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2	ENSMUST00000111664.8|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2
mm39_v1_chr3_-_115508680_115508721	0.01662813816121973	AUGUGCC	ENSMUST00000055676.4|S1pr1|ENSMUSG00000045092.9|sphingosine-1-phosphate receptor 1
mm39_v1_chr17_-_24746911_24746924	0.016486979525646137	AUGUGCC	ENSMUST00000176652.8|Traf7|ENSMUSG00000052752.16|TNF receptor-associated factor 7
mm39_v1_chrX_+_97981352_97981402	0.014532103135782312	AUGUGCC	ENSMUST00000054697.7|Yipf6|ENSMUSG00000047694.13|Yip1 domain family, member 6
mm39_v1_chr3_-_9675130_9675146	0.014000877683605414	AUGUGCC	ENSMUST00000041124.13|Zfp704|ENSMUSG00000040209.13|zinc finger protein 704
mm39_v1_chr11_+_75521800_75521902	0.013982430161138891	AUGUGCC	ENSMUST00000006286.9|Inpp5k|ENSMUSG00000006127.10|inositol polyphosphate 5-phosphatase K
mm39_v1_chr13_-_81859056_81859132	0.012435966037423843	AUGUGCC	ENSMUST00000161920.2|Polr3g|ENSMUSG00000035834.12|polymerase (RNA) III (DNA directed) polypeptide G	ENSMUST00000048993.12|Polr3g|ENSMUSG00000035834.12|polymerase (RNA) III (DNA directed) polypeptide G
mm39_v1_chr16_+_49675969_49676120	0.011373569151238707	AUGUGCC	ENSMUST00000229101.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230836.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000229206.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000084838.14|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	ENSMUST00000230281.2|Cd47|ENSMUSG00000055447.20|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm39_v1_chr17_+_56980356_56980392	0.008062602925412889	AUGUGCC	ENSMUST00000002445.10|Ranbp3|ENSMUSG00000002372.10|RAN binding protein 3	ENSMUST00000233319.2|Ranbp3|ENSMUSG00000002372.10|RAN binding protein 3
mm39_v1_chr2_-_63014622_63014681	0.0071847605150067865	AUGUGCC	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr17_-_13211075_13211146	0.006711065462653708	AUGUGCC	ENSMUST00000159986.8|Wtap|ENSMUSG00000060475.14|Wilms tumour 1-associating protein	ENSMUST00000007007.14|Wtap|ENSMUSG00000060475.14|Wilms tumour 1-associating protein
mm39_v1_chr17_+_46513666_46513782	0.005287980575022881	AUGUGCC	ENSMUST00000087031.7|Xpo5|ENSMUSG00000067150.7|exportin 5
mm39_v1_chr14_-_61677258_61677323	0.005275225417221992	AUGUGCC	ENSMUST00000022496.9|Kpna3|ENSMUSG00000021929.10|karyopherin (importin) alpha 3
mm39_v1_chr14_-_121616616_121616746	0.00477672552762573	AUGUGCC	ENSMUST00000079817.8|Stk24|ENSMUSG00000063410.9|serine/threonine kinase 24
mm39_v1_chr13_-_89890609_89890634	0.004631951781284073	AUGUGCC	ENSMUST00000109546.9|Vcan|ENSMUSG00000021614.17|versican
mm39_v1_chr12_-_14202041_14202070	0.0044250930247023805	AUGUGCC	ENSMUST00000020926.8|Lratd1|ENSMUSG00000020607.8|LRAT domain containing 1
mm39_v1_chr13_-_92667321_92667376	0.003795095060641111	AUGUGCC	ENSMUST00000022217.9|Zfyve16|ENSMUSG00000021706.15|zinc finger, FYVE domain containing 16
mm39_v1_chr15_+_40518414_40518450	0.0037771437300271123	AUGUGCC	ENSMUST00000053467.6|Zfpm2|ENSMUSG00000022306.10|zinc finger protein, multitype 2
mm39_v1_chr19_-_28657477_28657523	0.0036782043731180547	AUGUGCC	ENSMUST00000162022.8|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3	ENSMUST00000112612.9|Glis3|ENSMUSG00000052942.14|GLIS family zinc finger 3
mm39_v1_chr1_+_66507523_66507606	0.0036432530756419436	AUGUGCC	ENSMUST00000061620.17|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator	ENSMUST00000212557.3|Unc80|ENSMUSG00000055567.19|unc-80, NALCN activator
mm39_v1_chr14_-_122035225_122035272	0.0028061513463857463	AUGUGCC	ENSMUST00000100299.11|Dock9|ENSMUSG00000025558.20|dedicator of cytokinesis 9
mm39_v1_chr19_+_11889752_11889839	0.002235087686717555	AUGUGCC	ENSMUST00000061618.9|Patl1|ENSMUSG00000046139.9|protein associated with topoisomerase II homolog 1 (yeast)
mm39_v1_chr8_+_112263255_112263272	0.001912433914477012	AUGUGCC	ENSMUST00000171182.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1	ENSMUST00000168428.8|Znrf1|ENSMUSG00000033545.15|zinc and ring finger 1
mm39_v1_chrX_+_19925772_19925813	0.0005905604889789938	AUGUGCC	ENSMUST00000044138.8|Chst7|ENSMUSG00000037347.8|carbohydrate (N-acetylglucosamino) sulfotransferase 7
