mm39_v1_chr13_-_21934675_21934719	0.9534753941127754	Aire	ENSMUST00000102983.2|H4c12|ENSMUSG00000064288.5|H4 clustered histone 12
mm39_v1_chrM_+_11735_11751	0.6727382455634707	Aire	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chrM_+_14138_14154	0.5370627485023783	Aire	ENSMUST00000082421.1|mt-Cytb|ENSMUSG00000064370.1|mitochondrially encoded cytochrome b
mm39_v1_chrM_-_14061_14077	0.5326218807596871	Aire	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm39_v1_chr16_-_36228798_36228823	0.4101269499622486	Aire	ENSMUST00000023619.8|Stfa2|ENSMUSG00000022902.9|stefin A2
mm39_v1_chr7_+_142014546_142014623	0.3577989073149837	Aire	ENSMUST00000105968.8|Lsp1|ENSMUSG00000018819.11|lymphocyte specific 1	ENSMUST00000018963.11|Lsp1|ENSMUSG00000018819.11|lymphocyte specific 1	ENSMUST00000105967.8|Lsp1|ENSMUSG00000018819.11|lymphocyte specific 1
mm39_v1_chr9_-_110818679_110818796	0.35501891285388837	Aire	ENSMUST00000084922.6|Rtp3|ENSMUSG00000066319.7|receptor transporter protein 3	ENSMUST00000199891.2|Rtp3|ENSMUSG00000066319.7|receptor transporter protein 3
mm39_v1_chrM_+_7006_7021	0.33140389478175786	Aire	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr9_+_45924120_45924298	0.30841809388585145	Aire	ENSMUST00000120463.9|Sik3|ENSMUSG00000034135.16|SIK family kinase 3	ENSMUST00000120247.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr2_-_88937158_88937179	0.29407107239005215	Aire	ENSMUST00000099806.3|Olfr1220|ENSMUSG00000101480.4|olfactory receptor 1220	ENSMUST00000213288.2|Olfr1220|ENSMUSG00000101480.4|olfactory receptor 1220
mm39_v1_chr7_-_102774821_102774845	0.29223634875990534	Aire	ENSMUST00000211075.3|Olfr586|ENSMUSG00000066268.7|olfactory receptor 586	ENSMUST00000215304.2|Olfr586|ENSMUSG00000066268.7|olfactory receptor 586	ENSMUST00000213281.2|Olfr586|ENSMUSG00000066268.7|olfactory receptor 586
mm39_v1_chr9_+_45924105_45924119	0.2855619348944298	Aire	ENSMUST00000126865.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr12_+_37292029_37292041	0.2528001956578298	Aire	ENSMUST00000160390.2|Agmo|ENSMUSG00000050103.19|alkylglycerol monooxygenase
mm39_v1_chr9_-_49479791_49479849	0.24301727094996464	Aire	ENSMUST00000194252.6|Ncam1|ENSMUSG00000039542.17|neural cell adhesion molecule 1
mm39_v1_chr13_+_49658249_49658292	0.23658211482865243	Aire	ENSMUST00000051504.8|Ecm2|ENSMUSG00000043631.9|extracellular matrix protein 2, female organ and adipocyte specific
mm39_v1_chr11_+_69805005_69805019	0.22716182765421106	Aire	ENSMUST00000057884.6|Gps2|ENSMUSG00000023170.15|G protein pathway suppressor 2
mm39_v1_chr19_-_5713701_5713723	0.22553252773356192	Aire	ENSMUST00000164304.9|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000237544.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr16_-_36695166_36695224	0.22439866347648538	Aire	ENSMUST00000075946.12|Eaf2|ENSMUSG00000022838.15|ELL associated factor 2
mm39_v1_chr5_-_84565218_84565248	0.22423892959407918	Aire	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chr8_+_65399831_65399907	0.22137360163004846	Aire	ENSMUST00000026595.13|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192	ENSMUST00000209852.2|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192	ENSMUST00000079896.9|Tmem192|ENSMUSG00000025521.16|transmembrane protein 192
mm39_v1_chr11_+_62349238_62349295	0.21399117938043186	Aire	ENSMUST00000014389.6|Pigl|ENSMUSG00000014245.9|phosphatidylinositol glycan anchor biosynthesis, class L
mm39_v1_chr11_-_69586884_69586929	0.2131479656082288	Aire	ENSMUST00000180587.8|Tnfsfm13|ENSMUSG00000018752.20|tumor necrosis factor (ligand) superfamily, membrane-bound member 13
mm39_v1_chrX_-_37665041_37665081	0.19900700240694247	Aire	ENSMUST00000050083.6|Cul4b|ENSMUSG00000031095.16|cullin 4B	ENSMUST00000115118.8|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chr10_+_3822667_3822789	0.18673505427741852	Aire	ENSMUST00000136671.8|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1	ENSMUST00000042438.13|Plekhg1|ENSMUSG00000040624.19|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm39_v1_chr15_+_89095724_89095823	0.1829046318120007	Aire	ENSMUST00000227951.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000226221.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000238818.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000228284.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2
mm39_v1_chr17_-_59320257_59320367	0.17937043683548093	Aire	ENSMUST00000174122.2|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12	ENSMUST00000025065.12|Nudt12|ENSMUSG00000024228.13|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm39_v1_chr7_+_28869770_28869929	0.17659644172106256	Aire	ENSMUST00000033886.8|Ggn|ENSMUSG00000031493.11|gametogenetin	ENSMUST00000209019.2|Ggn|ENSMUSG00000031493.11|gametogenetin	ENSMUST00000208330.2|Ggn|ENSMUSG00000031493.11|gametogenetin
mm39_v1_chr1_-_5140504_5140511	0.17135198972372565	Aire	ENSMUST00000147158.2|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20	ENSMUST00000118000.8|Rgs20|ENSMUSG00000002459.18|regulator of G-protein signaling 20
mm39_v1_chr7_-_126275529_126275604	0.16810944668660252	Aire	ENSMUST00000106372.11|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000155419.3|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1	ENSMUST00000106373.9|Sult1a1|ENSMUSG00000030711.17|sulfotransferase family 1A, phenol-preferring, member 1
mm39_v1_chr2_+_89804937_89804962	0.16413703404147836	Aire	ENSMUST00000214630.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000111512.10|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000144710.3|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260	ENSMUST00000216678.2|Olfr1260|ENSMUSG00000042894.12|olfactory receptor 1260
mm39_v1_chr7_-_102507962_102507972	0.14649817024659245	Aire	ENSMUST00000213481.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566	ENSMUST00000209952.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566
mm39_v1_chr9_-_19452372_19452372	0.14434220273459833	Aire	ENSMUST00000213834.2|Olfr853|ENSMUSG00000051160.5|olfactory receptor 853
mm39_v1_chr16_-_18904240_18904256	0.1417397900237998	Aire	ENSMUST00000103746.3|Iglv1|ENSMUSG00000076934.3|immunoglobulin lambda variable 1
mm39_v1_chr9_+_108883907_108883939	0.13974554025264982	Aire	ENSMUST00000154184.5|Shisa5|ENSMUSG00000025647.17|shisa family member 5
mm39_v1_chr6_+_11907808_11907910	0.1378319229486763	Aire	ENSMUST00000155037.4|Phf14|ENSMUSG00000029629.18|PHD finger protein 14
mm39_v1_chr11_+_105866030_105866045	0.13768919358219608	Aire	ENSMUST00000001964.8|Ace|ENSMUSG00000020681.15|angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
mm39_v1_chr17_+_18518361_18518361	0.13626170629684858	Aire	ENSMUST00000231938.2|Vmn2r93|ENSMUSG00000079698.8|vomeronasal 2, receptor 93	ENSMUST00000079206.8|Vmn2r93|ENSMUSG00000079698.8|vomeronasal 2, receptor 93	ENSMUST00000231879.3|Vmn2r93|ENSMUSG00000079698.8|vomeronasal 2, receptor 93
mm39_v1_chr7_-_19398930_19398958	0.13227010904143796	Aire	ENSMUST00000055242.11|Clptm1|ENSMUSG00000002981.11|cleft lip and palate associated transmembrane protein 1
mm39_v1_chr2_+_172090412_172090412	0.12212175314355135	Aire	ENSMUST00000038532.2|Mc3r|ENSMUSG00000038537.2|melanocortin 3 receptor
mm39_v1_chr2_+_164790139_164790165	0.11420056491246561	Aire	ENSMUST00000017881.3|Mmp9|ENSMUSG00000017737.3|matrix metallopeptidase 9
mm39_v1_chr5_-_100521343_100521393	0.11083367108960736	Aire	ENSMUST00000182433.8|Sec31a|ENSMUSG00000035325.17|Sec31 homolog A (S. cerevisiae)
mm39_v1_chr17_+_21869545_21869545	0.11076173905580859	Aire	ENSMUST00000232827.2|Zfp983|ENSMUSG00000035868.10|zinc finger protein 983
mm39_v1_chr9_-_108140925_108141014	0.10847943338341323	Aire	ENSMUST00000171412.7|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000195429.6|Dag1|ENSMUSG00000039952.16|dystroglycan 1	ENSMUST00000080435.9|Dag1|ENSMUSG00000039952.16|dystroglycan 1
mm39_v1_chr16_-_91415873_91415914	0.10390288524522431	Aire	ENSMUST00000143058.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000049244.10|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000169982.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28	ENSMUST00000133731.2|Dnajc28|ENSMUSG00000039763.11|DnaJ heat shock protein family (Hsp40) member C28
mm39_v1_chr11_-_49077864_49077903	0.10101376705796038	Aire	ENSMUST00000153999.3|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9	ENSMUST00000066531.13|Btnl9|ENSMUSG00000040283.15|butyrophilin-like 9
mm39_v1_chr11_+_97206542_97206734	0.09852764862292474	Aire	ENSMUST00000019026.10|Mrpl45|ENSMUSG00000018882.13|mitochondrial ribosomal protein L45	ENSMUST00000132168.2|Mrpl45|ENSMUSG00000018882.13|mitochondrial ribosomal protein L45
mm39_v1_chr10_-_127587576_127587606	0.09579801654011917	Aire	ENSMUST00000079692.6|Gpr182|ENSMUSG00000058396.8|G protein-coupled receptor 182
mm39_v1_chr19_-_5713728_5713739	0.09330052650186099	Aire	ENSMUST00000169854.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr17_+_35455532_35455594	0.09155715311968586	Aire	ENSMUST00000068261.9|Atp6v1g2|ENSMUSG00000024403.17|ATPase, H+ transporting, lysosomal V1 subunit G2
mm39_v1_chr10_-_111833138_111833183	0.08760157186718746	Aire	ENSMUST00000074805.12|Glipr1|ENSMUSG00000056888.12|GLI pathogenesis-related 1 (glioma)
mm39_v1_chr4_-_46566431_46566472	0.08347506110076397	Aire	ENSMUST00000030021.14|Coro2a|ENSMUSG00000028337.15|coronin, actin binding protein 2A	ENSMUST00000107757.8|Coro2a|ENSMUSG00000028337.15|coronin, actin binding protein 2A
mm39_v1_chr13_+_64309675_64309729	0.08205286237020311	Aire	ENSMUST00000021929.10|Habp4|ENSMUSG00000021476.10|hyaluronic acid binding protein 4
mm39_v1_chr2_-_134485936_134485962	0.08022843893545571	Aire	ENSMUST00000110120.2|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr1_-_85247864_85247899	0.07839000827430512	Aire	ENSMUST00000159582.8|C130026I21Rik|ENSMUSG00000052477.16|RIKEN cDNA C130026I21 gene	ENSMUST00000161267.8|C130026I21Rik|ENSMUSG00000052477.16|RIKEN cDNA C130026I21 gene
mm39_v1_chr3_+_107008867_107008883	0.07784704198377453	Aire	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr11_-_96002784_96002814	0.07576339348540374	Aire	ENSMUST00000097162.6|Calcoco2|ENSMUSG00000006056.14|calcium binding and coiled-coil domain 2	ENSMUST00000068686.13|Calcoco2|ENSMUSG00000006056.14|calcium binding and coiled-coil domain 2
mm39_v1_chr2_+_87854404_87854404	0.07120899322909122	Aire	ENSMUST00000217006.2|Olfr1161|ENSMUSG00000045150.6|olfactory receptor 1161
mm39_v1_chr14_+_21531494_21531508	0.06872988773845959	Aire	ENSMUST00000182996.2|Kat6b|ENSMUSG00000021767.20|K(lysine) acetyltransferase 6B
mm39_v1_chr2_-_134485999_134486034	0.06746099373847392	Aire	ENSMUST00000110119.2|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr17_+_57412325_57412423	0.06393534240356878	Aire	ENSMUST00000039490.9|Tnfsf9|ENSMUSG00000035678.9|tumor necrosis factor (ligand) superfamily, member 9
mm39_v1_chr6_+_135339929_135339959	0.06224100362160676	Aire	ENSMUST00000032330.16|Emp1|ENSMUSG00000030208.16|epithelial membrane protein 1
mm39_v1_chr10_+_129263175_129263175	0.06159908021577806	Aire	ENSMUST00000204529.3|Olfr786|ENSMUSG00000095696.4|olfactory receptor 786
mm39_v1_chr2_-_150531280_150531280	0.05857822758216604	Aire	ENSMUST00000046095.10|Vsx1|ENSMUSG00000033080.10|visual system homeobox 1
mm39_v1_chr11_-_83177548_83177555	0.05655163062759963	Aire	ENSMUST00000163961.3|Slfn14|ENSMUSG00000082101.4|schlafen 14
mm39_v1_chr2_-_93841152_93841168	0.05646759957346352	Aire	ENSMUST00000111240.8|Alkbh3|ENSMUSG00000040174.15|alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase
mm39_v1_chr19_-_5713648_5713698	0.05541879605541787	Aire	ENSMUST00000080824.13|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000237874.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000071857.13|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1	ENSMUST00000236464.2|Sipa1|ENSMUSG00000056917.14|signal-induced proliferation associated gene 1
mm39_v1_chr10_+_80441855_80441855	0.05468995538354487	Aire	ENSMUST00000178231.2|Gm49322|ENSMUSG00000035370.10|predicted gene, 49322
mm39_v1_chr11_+_11414256_11414256	0.054571464785778144	Aire	ENSMUST00000020410.11|Spata48|ENSMUSG00000020191.12|spermatogenesis associated 48
mm39_v1_chr8_-_4267260_4267312	0.05451225231264614	Aire	ENSMUST00000168386.9|Prr36|ENSMUSG00000064125.15|proline rich 36
mm39_v1_chr8_+_47439916_47439946	0.05373154390601731	Aire	ENSMUST00000039840.15|Enpp6|ENSMUSG00000038173.16|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm39_v1_chr9_-_39920878_39920878	0.05341194239920746	Aire	ENSMUST00000216463.3|Olfr980|ENSMUSG00000060254.8|olfactory receptor 980
mm39_v1_chr16_-_55755208_55755243	0.05115036287260503	Aire	ENSMUST00000121129.8|Cep97|ENSMUSG00000022604.19|centrosomal protein 97	ENSMUST00000023270.14|Cep97|ENSMUSG00000022604.19|centrosomal protein 97
mm39_v1_chr5_-_134589025_134589025	0.049712319154685054	Aire	ENSMUST00000149604.5|Syna|ENSMUSG00000085957.5|syncytin a
mm39_v1_chr3_+_88742538_88742538	0.046687238902213185	Aire	ENSMUST00000107498.9|Gon4l|ENSMUSG00000054199.18|gon-4-like (C.elegans)
mm39_v1_chr10_-_95678748_95678758	0.041814447200171	Aire	ENSMUST00000210336.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chr10_-_95678786_95678808	0.03787971569201959	Aire	ENSMUST00000211096.2|Gm33543|ENSMUSG00000110353.2|predicted gene, 33543
mm39_v1_chrX_+_100473161_100473315	0.03675766452189385	Aire	ENSMUST00000033673.7|Nono|ENSMUSG00000031311.18|non-POU-domain-containing, octamer binding protein
mm39_v1_chr1_+_65225886_65225921	0.03169096467107496	Aire	ENSMUST00000097707.5|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr8_-_110688716_110688846	0.026060230485141004	Aire	ENSMUST00000001722.14|Marveld3|ENSMUSG00000001672.15|MARVEL (membrane-associating) domain containing 3	ENSMUST00000051430.7|Marveld3|ENSMUSG00000001672.15|MARVEL (membrane-associating) domain containing 3
mm39_v1_chr11_-_66943389_66943443	0.024178802981378537	Aire	ENSMUST00000116363.2|Adprm|ENSMUSG00000020910.17|ADP-ribose/CDP-alcohol diphosphatase, manganese dependent
mm39_v1_chr6_+_70549568_70549617	0.023202807068992512	Aire	ENSMUST00000196940.2|Igkv3-10|ENSMUSG00000076596.4|immunoglobulin kappa variable 3-10	ENSMUST00000103397.3|Igkv3-10|ENSMUSG00000076596.4|immunoglobulin kappa variable 3-10
mm39_v1_chr16_+_22877000_22877143	0.02287059198272523	Aire	ENSMUST00000039492.14|Kng1|ENSMUSG00000022875.19|kininogen 1	ENSMUST00000023589.15|Kng1|ENSMUSG00000022875.19|kininogen 1	ENSMUST00000089902.8|Kng1|ENSMUSG00000022875.19|kininogen 1
mm39_v1_chr13_-_59879548_59879572	0.020426391892342098	Aire	ENSMUST00000052978.6|Spata31d1d|ENSMUSG00000043986.6|spermatogenesis associated 31 subfamily D, member 1D
mm39_v1_chr6_+_42222841_42222910	0.020160108998810013	Aire	ENSMUST00000031897.8|Gstk1|ENSMUSG00000029864.8|glutathione S-transferase kappa 1
mm39_v1_chr11_+_120499295_120499331	0.019590530496170867	Aire	ENSMUST00000106194.8|Npb|ENSMUSG00000044034.12|neuropeptide B	ENSMUST00000106195.3|Npb|ENSMUSG00000044034.12|neuropeptide B	ENSMUST00000061309.5|Npb|ENSMUSG00000044034.12|neuropeptide B
mm39_v1_chr17_-_74257164_74257186	0.018005060054114955	Aire	ENSMUST00000024866.6|Xdh|ENSMUSG00000024066.10|xanthine dehydrogenase
mm39_v1_chr4_+_154954042_154954093	0.016334183001399594	Aire	ENSMUST00000079269.14|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000163732.8|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1	ENSMUST00000080559.13|Mmel1|ENSMUSG00000058183.15|membrane metallo-endopeptidase-like 1
mm39_v1_chr3_+_82933383_82933522	0.015860304561489524	Aire	ENSMUST00000029630.15|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain	ENSMUST00000166581.4|Fga|ENSMUSG00000028001.17|fibrinogen alpha chain
mm39_v1_chr10_-_106959444_106959460	0.01565529083997506	Aire	ENSMUST00000165067.9|Acss3|ENSMUSG00000035948.14|acyl-CoA synthetase short-chain family member 3
mm39_v1_chr2_+_82773971_82773984	0.01426640070209288	Aire	ENSMUST00000143764.9|Fsip2|ENSMUSG00000075249.13|fibrous sheath-interacting protein 2
mm39_v1_chr16_-_22847829_22847856	0.013622048810194753	Aire	ENSMUST00000100046.9|Kng2|ENSMUSG00000060459.15|kininogen 2
mm39_v1_chr2_+_55325931_55325982	0.013152041333734536	Aire	ENSMUST00000067101.10|Kcnj3|ENSMUSG00000026824.12|potassium inwardly-rectifying channel, subfamily J, member 3
mm39_v1_chr7_+_6463510_6463510	0.01314498505411484	Aire	ENSMUST00000056120.5|Olfr1336|ENSMUSG00000048620.7|olfactory receptor 1336
mm39_v1_chrY_-_79161056_79161056	0.01250787329853054	Aire	ENSMUST00000179922.2|Gm20917|ENSMUSG00000095867.3|predicted gene, 20917
mm39_v1_chr5_-_50216249_50216352	0.011817016408357842	Aire	ENSMUST00000030971.7|Adgra3|ENSMUSG00000029090.13|adhesion G protein-coupled receptor A3
mm39_v1_chr14_+_55170152_55170152	0.011648155459245071	Aire	ENSMUST00000037863.6|Il25|ENSMUSG00000040770.6|interleukin 25
mm39_v1_chr1_+_21419819_21419865	0.01143963813481981	Aire	ENSMUST00000088407.4|Khdc1a|ENSMUSG00000067750.4|KH domain containing 1A
mm39_v1_chr10_+_33733706_33733717	0.011076051020513697	Aire	ENSMUST00000218204.2|Sult3a1|ENSMUSG00000069668.5|sulfotransferase family 3A, member 1
mm39_v1_chr10_+_123099945_123099981	0.01085708819436528	Aire	ENSMUST00000238972.2|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2	ENSMUST00000050756.8|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2
mm39_v1_chr6_+_126916919_126916951	0.008650354153010971	Aire	ENSMUST00000032497.7|D6Wsu163e|ENSMUSG00000030347.7|DNA segment, Chr 6, Wayne State University 163, expressed
mm39_v1_chrX_-_6907858_6907897	0.008505486638309736	Aire	ENSMUST00000115752.8|Ccnb3|ENSMUSG00000051592.15|cyclin B3
mm39_v1_chr7_+_28563255_28563278	0.00829592756064578	Aire	ENSMUST00000138272.8|Lgals7|ENSMUSG00000053522.12|lectin, galactose binding, soluble 7
mm39_v1_chr9_+_104424466_104424494	0.006545935177137232	Aire	ENSMUST00000098443.9|Cpne4|ENSMUSG00000032564.17|copine IV
mm39_v1_chrX_-_101909959_101909959	0.006000083404904128	Aire	ENSMUST00000048061.13|1700031F05Rik|ENSMUSG00000032894.14|RIKEN cDNA 1700031F05 gene
mm39_v1_chr15_+_10358611_10358632	0.005842562168553008	Aire	ENSMUST00000110541.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2	ENSMUST00000110542.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2
mm39_v1_chr14_-_50521663_50521663	0.005614284890613505	Aire	ENSMUST00000213701.2|Olfr732|ENSMUSG00000091873.3|olfactory receptor 732
mm39_v1_chr1_+_21438462_21438555	0.005462845073508209	Aire	ENSMUST00000070223.6|Khdc1c|ENSMUSG00000041722.8|KH domain containing 1C
mm39_v1_chr7_-_6491875_6491875	0.005265977226058488	Aire	ENSMUST00000036357.7|Olfr1347|ENSMUSG00000034583.10|olfactory receptor 1347	ENSMUST00000220413.2|Olfr1347|ENSMUSG00000034583.10|olfactory receptor 1347
mm39_v1_chr14_+_53531798_53531798	0.005076873542475098	Aire	ENSMUST00000103626.3|Trav9n-4|ENSMUSG00000094231.3|T cell receptor alpha variable 9N-4
mm39_v1_chr7_-_19939532_19939532	0.004261682942978748	Aire	ENSMUST00000169774.2|Vmn1r241|ENSMUSG00000094298.2|vomeronasal 1 receptor 241
mm39_v1_chr7_-_103814019_103814039	0.004126220919368423	Aire	ENSMUST00000154555.2|Olfm5|ENSMUSG00000044265.17|olfactomedin 5	ENSMUST00000051137.15|Olfm5|ENSMUSG00000044265.17|olfactomedin 5
mm39_v1_chr17_-_53770324_53770368	0.003681099926379788	Aire	ENSMUST00000024725.5|Efhb|ENSMUSG00000023931.6|EF hand domain family, member B
mm39_v1_chrX_-_91059789_91059939	0.0036291163815905672	Aire	ENSMUST00000099471.3|Mageb1|ENSMUSG00000062162.3|MAGE family member B1	ENSMUST00000072269.2|Mageb1|ENSMUSG00000062162.3|MAGE family member B1
mm39_v1_chr13_-_105429514_105429523	0.0035196891611418055	Aire	ENSMUST00000224011.2|Rnf180|ENSMUSG00000021720.12|ring finger protein 180
mm39_v1_chrX_+_73171069_73171075	0.0033677504615290768	Aire	ENSMUST00000033771.11|Opn1mw|ENSMUSG00000031394.12|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	ENSMUST00000101457.10|Opn1mw|ENSMUSG00000031394.12|opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
mm39_v1_chr7_+_23592954_23592954	0.0033202845029231287	Aire	ENSMUST00000078593.3|Vmn1r178|ENSMUSG00000062598.4|vomeronasal 1 receptor 178
mm39_v1_chr11_-_42211868_42211884	0.003165749602711441	Aire	ENSMUST00000020703.13|Gabra6|ENSMUSG00000020428.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	ENSMUST00000155218.9|Gabra6|ENSMUSG00000020428.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm39_v1_chr9_+_75922137_75922337	0.002937830239005821	Aire	ENSMUST00000008052.13|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	ENSMUST00000183425.8|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	ENSMUST00000183979.8|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	ENSMUST00000117981.3|Hmgcll1|ENSMUSG00000007908.15|3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
mm39_v1_chr1_+_5658716_5658780	0.002933768109501174	Aire	ENSMUST00000160777.8|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000239100.2|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1	ENSMUST00000027038.11|Oprk1|ENSMUSG00000025905.15|opioid receptor, kappa 1
mm39_v1_chr10_-_130116088_130116111	0.002907088132457466	Aire	ENSMUST00000061571.5|Neurod4|ENSMUSG00000048015.5|neurogenic differentiation 4
mm39_v1_chrY_-_7167777_7167777	0.0028379560613019886	Aire	ENSMUST00000178447.2|Gm21244|ENSMUSG00000094484.3|predicted gene, 21244
mm39_v1_chr16_+_34471558_34471591	0.0027396949770786914	Aire	ENSMUST00000023530.5|Ropn1|ENSMUSG00000022832.12|ropporin, rhophilin associated protein 1
mm39_v1_chr16_+_36695479_36695566	0.002532701294195018	Aire	ENSMUST00000023534.7|Golgb1|ENSMUSG00000034243.18|golgi autoantigen, golgin subfamily b, macrogolgin 1	ENSMUST00000114812.9|Golgb1|ENSMUSG00000034243.18|golgi autoantigen, golgin subfamily b, macrogolgin 1	ENSMUST00000134616.8|Golgb1|ENSMUSG00000034243.18|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm39_v1_chr17_+_87943401_87943423	0.002496595732094261	Aire	ENSMUST00000235125.2|Epcam|ENSMUSG00000045394.10|epithelial cell adhesion molecule	ENSMUST00000053577.9|Epcam|ENSMUSG00000045394.10|epithelial cell adhesion molecule	ENSMUST00000234009.2|Epcam|ENSMUSG00000045394.10|epithelial cell adhesion molecule
mm39_v1_chr7_-_84059170_84059210	0.0024237408956674215	Aire	ENSMUST00000208995.2|Arnt2|ENSMUSG00000015709.10|aryl hydrocarbon receptor nuclear translocator 2
mm39_v1_chr7_+_30681287_30681298	0.0022445567210716277	Aire	ENSMUST00000128384.3|Fam187b|ENSMUSG00000046826.8|family with sequence similarity 187, member B
mm39_v1_chr2_+_111209312_111209312	0.0021957209446564143	Aire	ENSMUST00000209096.2|Olfr1284|ENSMUSG00000108931.3|olfactory receptor 1284
mm39_v1_chr7_-_115445352_115445389	0.0021934685797622335	Aire	ENSMUST00000206369.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr5_+_130398261_130398316	0.0021359772222569844	Aire	ENSMUST00000086029.10|Caln1|ENSMUSG00000060371.13|calneuron 1
mm39_v1_chr16_-_20972750_20972750	0.0021038519157151737	Aire	ENSMUST00000170665.3|Teddm3|ENSMUSG00000090356.3|transmembrane epididymal family member 3
mm39_v1_chr14_-_70761507_70761524	0.0020335666649069738	Aire	ENSMUST00000022692.5|Sftpc|ENSMUSG00000022097.5|surfactant associated protein C
mm39_v1_chr11_-_42211886_42211899	0.0017251840279943883	Aire	ENSMUST00000109286.4|Gabra6|ENSMUSG00000020428.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm39_v1_chr13_-_27574822_27574835	0.001707634517651262	Aire	ENSMUST00000102954.10|Prl2b1|ENSMUSG00000069258.11|prolactin family 2, subfamily b, member 1	ENSMUST00000091678.3|Prl2b1|ENSMUSG00000069258.11|prolactin family 2, subfamily b, member 1
mm39_v1_chr7_-_19873013_19873013	0.0016811435902029392	Aire	ENSMUST00000098747.2|Vmn1r93|ENSMUSG00000096164.2|vomeronasal 1 receptor 93
mm39_v1_chr15_+_10358643_10358684	0.0016682200890347728	Aire	ENSMUST00000022858.8|Agxt2|ENSMUSG00000089678.9|alanine-glyoxylate aminotransferase 2
mm39_v1_chr15_-_89263790_89263821	0.0013113453557761548	Aire	ENSMUST00000238996.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr3_+_107008343_107008462	0.0012705698404566685	Aire	ENSMUST00000197470.5|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr13_-_27622594_27622621	0.0012050962846049285	Aire	ENSMUST00000018392.9|Prl8a6|ENSMUSG00000021345.17|prolactin family 8, subfamily a, member 6	ENSMUST00000110355.10|Prl8a6|ENSMUSG00000021345.17|prolactin family 8, subfamily a, member 6
mm39_v1_chr7_-_115445315_115445347	0.001184636262647128	Aire	ENSMUST00000166207.3|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chrX_+_111510223_111510223	0.0011637531291446516	Aire	ENSMUST00000113409.8|Zfp711|ENSMUSG00000025529.15|zinc finger protein 711
mm39_v1_chr11_+_49039086_49039086	0.0011619396554738703	Aire	ENSMUST00000059379.2|Olfr1395|ENSMUSG00000050763.5|olfactory receptor 1395
mm39_v1_chr4_+_115268821_115268821	0.0008580955338549413	Aire	ENSMUST00000094887.4|Cyp4a12b|ENSMUSG00000078597.3|cytochrome P450, family 4, subfamily a, polypeptide 12B
mm39_v1_chrX_+_77169068_77169081	0.0007813262290202362	Aire	ENSMUST00000114030.3|Gm5938|ENSMUSG00000079521.3|predicted gene 5938
mm39_v1_chr9_+_18946421_18946421	0.0007197770086984366	Aire	ENSMUST00000059315.4|Olfr835|ENSMUSG00000045204.5|olfactory receptor 835
mm39_v1_chr8_-_4266912_4267008	0.0007189785072890159	Aire	ENSMUST00000177491.8|Prr36|ENSMUSG00000064125.15|proline rich 36
mm39_v1_chr17_-_15129766_15129786	0.0006484894804134554	Aire	ENSMUST00000228233.2|Wdr27|ENSMUSG00000046991.13|WD repeat domain 27
mm39_v1_chr6_+_41039255_41039272	0.0005562414577385944	Aire	ENSMUST00000103266.3|Trbv5|ENSMUSG00000076465.3|T cell receptor beta, variable 5
mm39_v1_chr8_-_4267131_4267169	0.0005189949906116533	Aire	ENSMUST00000175906.2|Prr36|ENSMUSG00000064125.15|proline rich 36
mm39_v1_chr13_+_65180860_65180880	0.0004769283347668163	Aire	ENSMUST00000099427.3|Spata31d1c|ENSMUSG00000074849.3|spermatogenesis associated 31 subfamily D, member 1C
mm39_v1_chr15_-_98211429_98211429	0.00022697667277296493	Aire	ENSMUST00000079736.3|Olfr285|ENSMUSG00000062037.4|olfactory receptor 285
mm39_v1_chr1_-_90771638_90771666	0.000212521387235358	Aire	ENSMUST00000130846.9|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3
mm39_v1_chr11_-_89732091_89732115	0.0001351777617160418	Aire	ENSMUST00000238273.3|Ankfn1|ENSMUSG00000047773.16|ankyrin-repeat and fibronectin type III domain containing 1
mm39_v1_chr19_-_58781709_58781730	0.00010777081915846404	Aire	ENSMUST00000166692.2|1700019N19Rik|ENSMUSG00000026931.11|RIKEN cDNA 1700019N19 gene
mm39_v1_chr2_-_89170692_89170692	0.00010119569162088336	Aire	ENSMUST00000099784.5|Olfr1233|ENSMUSG00000075091.6|olfactory receptor 1233
mm39_v1_chr5_+_138062515_138062515	8.692877172673248e-05	Aire	ENSMUST00000178402.2|Smok3c|ENSMUSG00000075598.6|sperm motility kinase 3C
