mm39_v1_chr11_+_87684548_87684632	2.4127225131861967	Brca1	ENSMUST00000143021.9|Mpo|ENSMUSG00000009350.14|myeloperoxidase
mm39_v1_chr18_-_43610829_43610868	2.101867549600997	Brca1	ENSMUST00000057110.11|Eif3j2|ENSMUSG00000043424.11|eukaryotic translation initiation factor 3, subunit J2
mm39_v1_chr13_+_28441511_28441583	1.5988060627129956	Brca1	ENSMUST00000223428.2|Rps18-ps5|ENSMUSG00000113061.2|ribosomal protein S18, pseudogene 5
mm39_v1_chr9_+_88209250_88209250	1.436570361495144	Brca1	ENSMUST00000034992.8|Nt5e|ENSMUSG00000032420.9|5' nucleotidase, ecto
mm39_v1_chr7_+_100143250_100143304	1.3868930970951632	Brca1	ENSMUST00000153287.8|Ucp2|ENSMUSG00000033685.14|uncoupling protein 2 (mitochondrial, proton carrier)
mm39_v1_chr13_-_97897139_97897142	1.2661774692747438	Brca1	ENSMUST00000074072.5|Rps18-ps6|ENSMUSG00000069117.5|ribosomal protein S18, pseudogene 6
mm39_v1_chrX_+_168468186_168468246	1.1517674663794384	Brca1	ENSMUST00000112107.8|Mid1|ENSMUSG00000035299.17|midline 1	ENSMUST00000112104.8|Mid1|ENSMUSG00000035299.17|midline 1
mm39_v1_chr5_+_136982100_136982260	1.0115283516665958	Brca1	ENSMUST00000111094.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1	ENSMUST00000111097.8|Fis1|ENSMUSG00000019054.14|fission, mitochondrial 1
mm39_v1_chr8_+_85696453_85696490	0.956276241260882	Brca1	ENSMUST00000125893.8|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2
mm39_v1_chr12_+_52144511_52144557	0.9488510940528829	Brca1	ENSMUST00000040090.16|Nubpl|ENSMUSG00000035142.19|nucleotide binding protein-like
mm39_v1_chr17_+_6697511_6697604	0.8309416289122867	Brca1	ENSMUST00000179569.3|Dynlt1b|ENSMUSG00000096255.3|dynein light chain Tctex-type 1B
mm39_v1_chr11_-_93776580_93776599	0.8162549500912023	Brca1	ENSMUST00000066888.10|Utp18|ENSMUSG00000054079.13|UTP18 small subunit processome component
mm39_v1_chr8_+_85696396_85696449	0.8020802141341253	Brca1	ENSMUST00000109733.8|Prdx2|ENSMUSG00000005161.16|peroxiredoxin 2
mm39_v1_chr12_+_111005768_111005834	0.7665812040288212	Brca1	ENSMUST00000084968.14|Rcor1|ENSMUSG00000037896.18|REST corepressor 1
mm39_v1_chr8_+_47070326_47070452	0.7615887617516198	Brca1	ENSMUST00000211115.2|Casp3|ENSMUSG00000031628.10|caspase 3	ENSMUST00000093517.7|Casp3|ENSMUSG00000031628.10|caspase 3
mm39_v1_chr5_+_137756407_137756461	0.7257408679065943	Brca1	ENSMUST00000141733.8|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4	ENSMUST00000110985.2|Tsc22d4|ENSMUSG00000029723.17|TSC22 domain family, member 4
mm39_v1_chr19_-_32443978_32443978	0.7088783670422119	Brca1	ENSMUST00000078034.5|Rpl9-ps6|ENSMUSG00000062456.5|ribosomal protein L9, pseudogene 6
mm39_v1_chr13_-_100912308_100912407	0.6870667343369846	Brca1	ENSMUST00000075550.4|Cenph|ENSMUSG00000045273.9|centromere protein H
mm39_v1_chr3_-_107838895_107839049	0.6864248480560173	Brca1	ENSMUST00000133947.9|Gstm7|ENSMUSG00000004035.13|glutathione S-transferase, mu 7	ENSMUST00000124215.2|Gstm7|ENSMUSG00000004035.13|glutathione S-transferase, mu 7	ENSMUST00000106688.8|Gstm7|ENSMUSG00000004035.13|glutathione S-transferase, mu 7	ENSMUST00000106687.9|Gstm7|ENSMUSG00000004035.13|glutathione S-transferase, mu 7
mm39_v1_chr19_+_10582987_10583008	0.6816780839918368	Brca1	ENSMUST00000237337.2|Ddb1|ENSMUSG00000024740.11|damage specific DNA binding protein 1
mm39_v1_chrX_+_149377416_149377474	0.6795931284890439	Brca1	ENSMUST00000112713.3|Pfkfb1|ENSMUSG00000025271.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm39_v1_chr8_-_85696369_85696413	0.6793927922902498	Brca1	ENSMUST00000109736.9|Rnaseh2a|ENSMUSG00000052926.17|ribonuclease H2, large subunit	ENSMUST00000140561.8|Rnaseh2a|ENSMUSG00000052926.17|ribonuclease H2, large subunit
mm39_v1_chr1_-_65225572_65225597	0.6600033928752689	Brca1	ENSMUST00000188109.7|Idh1|ENSMUSG00000025950.17|isocitrate dehydrogenase 1 (NADP+), soluble
mm39_v1_chr19_-_10181243_10181533	0.6506411956670621	Brca1	ENSMUST00000142241.2|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000116542.9|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000025651.6|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1	ENSMUST00000156291.2|Fen1|ENSMUSG00000024742.16|flap structure specific endonuclease 1
mm39_v1_chr13_+_55862437_55862463	0.6467361862818639	Brca1	ENSMUST00000021959.11|Txndc15|ENSMUSG00000021497.11|thioredoxin domain containing 15
mm39_v1_chrM_+_8603_8615	0.637845157759261	Brca1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm39_v1_chr1_+_181952302_181952383	0.6194070230858402	Brca1	ENSMUST00000111018.2|Srp9|ENSMUSG00000026511.8|signal recognition particle 9	ENSMUST00000027792.6|Srp9|ENSMUSG00000026511.8|signal recognition particle 9
mm39_v1_chr17_-_34962823_34962865	0.6184468229399154	Brca1	ENSMUST00000069507.9|C4b|ENSMUSG00000073418.5|complement component 4B (Chido blood group)
mm39_v1_chr9_+_108911547_108911604	0.6175948133096496	Brca1	ENSMUST00000026735.9|Ccdc51|ENSMUSG00000025645.9|coiled-coil domain containing 51
mm39_v1_chr7_+_101546059_101546168	0.6105195772945621	Brca1	ENSMUST00000143835.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr4_+_108336164_108336278	0.5963272033903911	Brca1	ENSMUST00000155068.2|Tut4|ENSMUSG00000034610.15|terminal uridylyl transferase 4
mm39_v1_chr7_-_112968533_112968602	0.594474088420231	Brca1	ENSMUST00000047091.14|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10	ENSMUST00000119278.8|Btbd10|ENSMUSG00000038187.15|BTB (POZ) domain containing 10
mm39_v1_chr12_+_28699598_28699671	0.5764447391120117	Brca1	ENSMUST00000020959.9|Rnaseh1|ENSMUSG00000020630.10|ribonuclease H1
mm39_v1_chr19_-_24202344_24202438	0.5702374978443444	Brca1	ENSMUST00000099558.5|Tjp2|ENSMUSG00000024812.12|tight junction protein 2	ENSMUST00000232956.2|Tjp2|ENSMUSG00000024812.12|tight junction protein 2
mm39_v1_chr1_+_52158721_52158783	0.5649034555022889	Brca1	ENSMUST00000186057.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1
mm39_v1_chr8_+_34621717_34621808	0.5580879953920903	Brca1	ENSMUST00000239436.2|Saraf|ENSMUSG00000031532.8|store-operated calcium entry-associated regulatory factor	ENSMUST00000033933.8|Saraf|ENSMUSG00000031532.8|store-operated calcium entry-associated regulatory factor
mm39_v1_chr6_+_17693941_17693993	0.5520849920748687	Brca1	ENSMUST00000115420.8|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7	ENSMUST00000115419.8|St7|ENSMUSG00000029534.18|suppression of tumorigenicity 7
mm39_v1_chr11_-_106205320_106205403	0.5436451767648292	Brca1	ENSMUST00000167143.2|Cd79b|ENSMUSG00000040592.12|CD79B antigen
mm39_v1_chr2_-_29677634_29677688	0.5401267256383723	Brca1	ENSMUST00000177467.8|Trub2|ENSMUSG00000039826.14|TruB pseudouridine (psi) synthase family member 2	ENSMUST00000113807.10|Trub2|ENSMUSG00000039826.14|TruB pseudouridine (psi) synthase family member 2
mm39_v1_chr19_+_44551280_44551318	0.5385129958067058	Brca1	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr12_+_83567240_83567258	0.5373838131397348	Brca1	ENSMUST00000021645.9|Dcaf4|ENSMUSG00000021222.10|DDB1 and CUL4 associated factor 4
mm39_v1_chr15_+_102427149_102427237	0.5338412670712243	Brca1	ENSMUST00000146756.8|Tarbp2|ENSMUSG00000023051.12|TARBP2, RISC loading complex RNA binding subunit	ENSMUST00000142194.3|Tarbp2|ENSMUSG00000023051.12|TARBP2, RISC loading complex RNA binding subunit
mm39_v1_chr12_-_86773160_86773250	0.5336015083348047	Brca1	ENSMUST00000021682.9|Angel1|ENSMUSG00000021257.15|angel homolog 1
mm39_v1_chr3_-_61273228_61273372	0.5279726178612831	Brca1	ENSMUST00000066298.3|B430305J03Rik|ENSMUSG00000053706.3|RIKEN cDNA B430305J03 gene
mm39_v1_chr7_-_19449319_19449386	0.5268432071513132	Brca1	ENSMUST00000032555.10|Tomm40|ENSMUSG00000002984.18|translocase of outer mitochondrial membrane 40	ENSMUST00000093552.12|Tomm40|ENSMUSG00000002984.18|translocase of outer mitochondrial membrane 40
mm39_v1_chr1_+_52158693_52158710	0.49993983479704535	Brca1	ENSMUST00000189347.7|Stat1|ENSMUSG00000026104.15|signal transducer and activator of transcription 1
mm39_v1_chr7_-_46558754_46558784	0.4993073952529666	Brca1	ENSMUST00000209538.2|Tsg101|ENSMUSG00000014402.16|tumor susceptibility gene 101
mm39_v1_chr4_+_136197066_136197161	0.490890930762813	Brca1	ENSMUST00000170102.8|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1	ENSMUST00000105849.9|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1	ENSMUST00000129230.3|Luzp1|ENSMUSG00000001089.15|leucine zipper protein 1
mm39_v1_chr15_+_81900570_81900716	0.49070283450803504	Brca1	ENSMUST00000069530.13|Xrcc6|ENSMUSG00000022471.15|X-ray repair complementing defective repair in Chinese hamster cells 6	ENSMUST00000168581.8|Xrcc6|ENSMUSG00000022471.15|X-ray repair complementing defective repair in Chinese hamster cells 6	ENSMUST00000164779.2|Xrcc6|ENSMUSG00000022471.15|X-ray repair complementing defective repair in Chinese hamster cells 6
mm39_v1_chr3_-_86906591_86906748	0.49056356152181635	Brca1	ENSMUST00000063869.11|Cd1d1|ENSMUSG00000028076.13|CD1d1 antigen	ENSMUST00000029717.4|Cd1d1|ENSMUSG00000028076.13|CD1d1 antigen
mm39_v1_chr3_+_109481223_109481306	0.48645465486463235	Brca1	ENSMUST00000106576.3|Vav3|ENSMUSG00000033721.17|vav 3 oncogene
mm39_v1_chr7_-_55669702_55669702	0.48105386751939166	Brca1	ENSMUST00000052204.6|Nipa1|ENSMUSG00000047037.6|non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
mm39_v1_chr2_-_34760960_34760974	0.47704919497036746	Brca1	ENSMUST00000028225.12|Psmd5|ENSMUSG00000026869.13|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm39_v1_chr17_+_34129221_34129251	0.4748513521359512	Brca1	ENSMUST00000174541.9|Daxx|ENSMUSG00000002307.17|Fas death domain-associated protein
mm39_v1_chrM_+_7758_7775	0.46552186408511115	Brca1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.1|mitochondrially encoded ATP synthase 8
mm39_v1_chr2_-_134486039_134486065	0.4618754727161161	Brca1	ENSMUST00000038228.11|Tmx4|ENSMUSG00000034723.12|thioredoxin-related transmembrane protein 4
mm39_v1_chr11_+_80320558_80320713	0.45619183208442093	Brca1	ENSMUST00000173565.2|Psmd11|ENSMUSG00000017428.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
mm39_v1_chr8_-_61407760_61407824	0.44936222581071317	Brca1	ENSMUST00000110302.8|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr6_-_120334400_120334450	0.4401232215470398	Brca1	ENSMUST00000112703.8|Ccdc77|ENSMUSG00000030177.15|coiled-coil domain containing 77
mm39_v1_chr7_-_16761732_16761771	0.43865437428829235	Brca1	ENSMUST00000142597.2|Ppp5c|ENSMUSG00000003099.12|protein phosphatase 5, catalytic subunit
mm39_v1_chr5_-_5564730_5564830	0.4178645847034957	Brca1	ENSMUST00000115445.8|Cldn12|ENSMUSG00000046798.15|claudin 12	ENSMUST00000179804.8|Cldn12|ENSMUSG00000046798.15|claudin 12	ENSMUST00000125110.2|Cldn12|ENSMUSG00000046798.15|claudin 12	ENSMUST00000115446.8|Cldn12|ENSMUSG00000046798.15|claudin 12
mm39_v1_chr2_+_36026395_36026441	0.41761390411285454	Brca1	ENSMUST00000028250.9|Mrrf|ENSMUSG00000026887.10|mitochondrial ribosome recycling factor
mm39_v1_chr9_-_96246460_96246495	0.4035617107093565	Brca1	ENSMUST00000034983.7|Atp1b3|ENSMUSG00000032412.9|ATPase, Na+/K+ transporting, beta 3 polypeptide
mm39_v1_chr12_+_83567303_83567408	0.40253245704716123	Brca1	ENSMUST00000222502.2|Dcaf4|ENSMUSG00000021222.10|DDB1 and CUL4 associated factor 4
mm39_v1_chr17_+_71511642_71511688	0.39909102069847374	Brca1	ENSMUST00000126681.8|Lpin2|ENSMUSG00000024052.18|lipin 2
mm39_v1_chr1_+_179788675_179788675	0.39576882708453265	Brca1	ENSMUST00000076687.12|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000097450.10|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha	ENSMUST00000212756.2|Cdc42bpa|ENSMUSG00000026490.19|CDC42 binding protein kinase alpha
mm39_v1_chr6_-_108162513_108162548	0.3952307021058339	Brca1	ENSMUST00000167338.8|Sumf1|ENSMUSG00000030101.16|sulfatase modifying factor 1	ENSMUST00000172188.2|Sumf1|ENSMUSG00000030101.16|sulfatase modifying factor 1	ENSMUST00000032191.16|Sumf1|ENSMUSG00000030101.16|sulfatase modifying factor 1
mm39_v1_chr15_+_36174156_36174217	0.39405548152272385	Brca1	ENSMUST00000180159.8|Polr2k|ENSMUSG00000045996.13|polymerase (RNA) II (DNA directed) polypeptide K	ENSMUST00000057177.7|Polr2k|ENSMUSG00000045996.13|polymerase (RNA) II (DNA directed) polypeptide K
mm39_v1_chr6_-_122778598_122778618	0.39233114436603617	Brca1	ENSMUST00000165884.8|Slc2a3|ENSMUSG00000003153.11|solute carrier family 2 (facilitated glucose transporter), member 3
mm39_v1_chr5_+_90638580_90638627	0.38895543857617826	Brca1	ENSMUST00000042755.7|Afp|ENSMUSG00000054932.7|alpha fetoprotein	ENSMUST00000200693.2|Afp|ENSMUSG00000054932.7|alpha fetoprotein
mm39_v1_chr13_+_93441447_93441786	0.3791625516733442	Brca1	ENSMUST00000109497.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109498.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000060490.11|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109492.9|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109496.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1	ENSMUST00000109495.8|Homer1|ENSMUSG00000007617.19|homer scaffolding protein 1
mm39_v1_chr15_+_79578141_79578186	0.37672916360971126	Brca1	ENSMUST00000230898.2|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1	ENSMUST00000229046.2|Gtpbp1|ENSMUSG00000042535.10|GTP binding protein 1
mm39_v1_chr14_-_52248324_52248369	0.37527939313253145	Brca1	ENSMUST00000226964.2|Zfp219|ENSMUSG00000049295.18|zinc finger protein 219
mm39_v1_chr16_-_22676264_22676419	0.3751856804661232	Brca1	ENSMUST00000232075.2|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1	ENSMUST00000004576.8|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1
mm39_v1_chrM_+_9459_9459	0.36882404582752487	Brca1	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm39_v1_chr4_+_10874498_10874526	0.3674664993888492	Brca1	ENSMUST00000080517.14|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chr11_+_6241660_6241687	0.3667445059109401	Brca1	ENSMUST00000101554.9|Ogdh|ENSMUSG00000020456.18|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	ENSMUST00000093350.10|Ogdh|ENSMUSG00000020456.18|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm39_v1_chr7_+_101545547_101545638	0.360009034104592	Brca1	ENSMUST00000035395.14|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000106973.8|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15	ENSMUST00000144207.9|Anapc15|ENSMUSG00000030649.19|anaphase promoting complex C subunit 15
mm39_v1_chr2_-_155424576_155424587	0.359661769039622	Brca1	ENSMUST00000126322.8|Gss|ENSMUSG00000027610.18|glutathione synthetase
mm39_v1_chr6_+_115578863_115578902	0.3550417225689967	Brca1	ENSMUST00000000449.9|Mkrn2|ENSMUSG00000000439.10|makorin, ring finger protein, 2
mm39_v1_chr8_+_47070461_47070481	0.3526753111503385	Brca1	ENSMUST00000210534.2|Casp3|ENSMUSG00000031628.10|caspase 3
mm39_v1_chrM_+_7779_7927	0.346698423974003	Brca1	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr6_-_120334382_120334396	0.3405345230792721	Brca1	ENSMUST00000032283.12|Ccdc77|ENSMUSG00000030177.15|coiled-coil domain containing 77
mm39_v1_chr8_+_85598734_85598741	0.34044852455550045	Brca1	ENSMUST00000170296.2|Syce2|ENSMUSG00000003824.13|synaptonemal complex central element protein 2	ENSMUST00000136026.8|Syce2|ENSMUSG00000003824.13|synaptonemal complex central element protein 2
mm39_v1_chr18_+_36926929_36926992	0.327742177930002	Brca1	ENSMUST00000001419.10|Zmat2|ENSMUSG00000001383.10|zinc finger, matrin type 2
mm39_v1_chr19_+_36061096_36061136	0.32694674465578083	Brca1	ENSMUST00000025714.9|Rpp30|ENSMUSG00000024800.9|ribonuclease P/MRP 30 subunit
mm39_v1_chr10_-_128759817_128759904	0.32645518311847643	Brca1	ENSMUST00000131271.2|Bloc1s1|ENSMUSG00000090247.8|biogenesis of lysosomal organelles complex-1, subunit 1
mm39_v1_chr1_-_171108754_171108766	0.32225683338111455	Brca1	ENSMUST00000073120.11|Ppox|ENSMUSG00000062729.13|protoporphyrinogen oxidase
mm39_v1_chr4_-_133600308_133600379	0.3197479345362815	Brca1	ENSMUST00000137486.3|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr19_+_57441332_57441389	0.3181298726365386	Brca1	ENSMUST00000026073.14|Trub1|ENSMUSG00000025086.14|TruB pseudouridine (psi) synthase family member 1	ENSMUST00000026072.5|Trub1|ENSMUSG00000025086.14|TruB pseudouridine (psi) synthase family member 1	ENSMUST00000238107.2|Trub1|ENSMUSG00000025086.14|TruB pseudouridine (psi) synthase family member 1
mm39_v1_chr11_-_84710276_84710341	0.3103568237359688	Brca1	ENSMUST00000018549.8|Mrm1|ENSMUSG00000018405.8|mitochondrial rRNA methyltransferase 1
mm39_v1_chr3_+_89970088_89970148	0.30446018907366457	Brca1	ENSMUST00000238911.2|1700094D03Rik|ENSMUSG00000118506.2|RIKEN cDNA 1700094D03 gene	ENSMUST00000029551.3|1700094D03Rik|ENSMUSG00000118506.2|RIKEN cDNA 1700094D03 gene
mm39_v1_chrX_+_149372903_149372993	0.3031968907530104	Brca1	ENSMUST00000080884.11|Pfkfb1|ENSMUSG00000025271.14|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm39_v1_chr15_+_76264695_76264742	0.30128189882193684	Brca1	ENSMUST00000096385.11|Mroh1|ENSMUSG00000022558.17|maestro heat-like repeat family member 1	ENSMUST00000160728.8|Mroh1|ENSMUSG00000022558.17|maestro heat-like repeat family member 1
mm39_v1_chr8_+_25507227_25507338	0.2941483729151457	Brca1	ENSMUST00000033961.7|Tm2d2|ENSMUSG00000031556.7|TM2 domain containing 2	ENSMUST00000210536.2|Tm2d2|ENSMUSG00000031556.7|TM2 domain containing 2
mm39_v1_chr8_+_70583971_70584044	0.2864964432357272	Brca1	ENSMUST00000211898.2|Nr2c2ap|ENSMUSG00000071078.7|nuclear receptor 2C2-associated protein	ENSMUST00000095273.7|Nr2c2ap|ENSMUSG00000071078.7|nuclear receptor 2C2-associated protein
mm39_v1_chr11_+_97594220_97594282	0.28273211179776087	Brca1	ENSMUST00000103147.5|Psmb3|ENSMUSG00000069744.8|proteasome (prosome, macropain) subunit, beta type 3
mm39_v1_chr5_-_123127346_123127401	0.27575575280434544	Brca1	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr3_-_137837117_137837142	0.2704989139836296	Brca1	ENSMUST00000029805.13|Mttp|ENSMUSG00000028158.15|microsomal triglyceride transfer protein
mm39_v1_chr7_+_25016492_25016589	0.26963530211029807	Brca1	ENSMUST00000128119.2|Megf8|ENSMUSG00000045039.10|multiple EGF-like-domains 8
mm39_v1_chr4_+_115641996_115642037	0.26869837191396706	Brca1	ENSMUST00000177280.8|Atpaf1|ENSMUSG00000028710.19|ATP synthase mitochondrial F1 complex assembly factor 1	ENSMUST00000176047.8|Atpaf1|ENSMUSG00000028710.19|ATP synthase mitochondrial F1 complex assembly factor 1
mm39_v1_chr4_+_10874537_10874607	0.2659385840877173	Brca1	ENSMUST00000101504.3|2610301B20Rik|ENSMUSG00000059482.16|RIKEN cDNA 2610301B20 gene
mm39_v1_chrX_+_73352694_73352767	0.2590378852507316	Brca1	ENSMUST00000130581.2|Gdi1|ENSMUSG00000015291.11|guanosine diphosphate (GDP) dissociation inhibitor 1
mm39_v1_chr7_-_101749433_101749466	0.2580694115793593	Brca1	ENSMUST00000106937.8|Art5|ENSMUSG00000070424.13|ADP-ribosyltransferase 5
mm39_v1_chr9_+_96140781_96140838	0.25799227512365347	Brca1	ENSMUST00000190104.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000179416.8|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000189606.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr3_-_51184730_51184866	0.25786324795241633	Brca1	ENSMUST00000195432.2|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000091144.11|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000156983.3|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr17_-_71160477_71160543	0.2500953769129255	Brca1	ENSMUST00000118283.8|Tgif1|ENSMUSG00000047407.18|TGFB-induced factor homeobox 1
mm39_v1_chr9_+_8544143_8544224	0.24269930078597812	Brca1	ENSMUST00000050433.8|Trpc6|ENSMUSG00000031997.10|transient receptor potential cation channel, subfamily C, member 6	ENSMUST00000217462.2|Trpc6|ENSMUSG00000031997.10|transient receptor potential cation channel, subfamily C, member 6
mm39_v1_chr11_-_96807233_96807252	0.2426978906929536	Brca1	ENSMUST00000130774.2|Cdk5rap3|ENSMUSG00000018669.15|CDK5 regulatory subunit associated protein 3
mm39_v1_chr14_-_78970160_78970223	0.24186453985478723	Brca1	ENSMUST00000226342.3|Dgkh|ENSMUSG00000034731.12|diacylglycerol kinase, eta
mm39_v1_chr16_-_84632513_84632524	0.24081317646071768	Brca1	ENSMUST00000023608.14|Atp5j|ENSMUSG00000022890.14|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm39_v1_chr6_-_148846247_148846324	0.23767300453546428	Brca1	ENSMUST00000111562.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000081956.12|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr3_-_51184895_51184996	0.23578469358020043	Brca1	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chr13_+_25127127_25127146	0.23212278229903732	Brca1	ENSMUST00000021773.13|Gpld1|ENSMUSG00000021340.14|glycosylphosphatidylinositol specific phospholipase D1
mm39_v1_chr6_-_120334302_120334364	0.22761761264443836	Brca1	ENSMUST00000163827.8|Ccdc77|ENSMUSG00000030177.15|coiled-coil domain containing 77
mm39_v1_chr16_+_3854806_3855016	0.22742850416117877	Brca1	ENSMUST00000137748.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000006136.11|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000157044.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000120009.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I
mm39_v1_chr9_+_43996236_43996262	0.22319535543581362	Brca1	ENSMUST00000065461.9|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2	ENSMUST00000176416.8|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr12_-_69205882_69205960	0.22058011660322074	Brca1	ENSMUST00000037023.9|Rps29|ENSMUSG00000034892.9|ribosomal protein S29
mm39_v1_chr17_-_33904345_33904385	0.21420204723478076	Brca1	ENSMUST00000234474.2|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M	ENSMUST00000139302.8|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M	ENSMUST00000114385.9|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M
mm39_v1_chr11_-_96807273_96807355	0.20848272428156703	Brca1	ENSMUST00000103152.11|Cdk5rap3|ENSMUSG00000018669.15|CDK5 regulatory subunit associated protein 3
mm39_v1_chr1_-_169358912_169359011	0.20757527043084711	Brca1	ENSMUST00000192248.2|Nuf2|ENSMUSG00000026683.15|NUF2, NDC80 kinetochore complex component	ENSMUST00000028000.13|Nuf2|ENSMUSG00000026683.15|NUF2, NDC80 kinetochore complex component
mm39_v1_chr11_+_115671523_115671544	0.19386602425970043	Brca1	ENSMUST00000239299.2|Tmem94|ENSMUSG00000020747.19|transmembrane protein 94
mm39_v1_chr8_+_12965876_12965975	0.19354726288681526	Brca1	ENSMUST00000110876.9|Mcf2l|ENSMUSG00000031442.22|mcf.2 transforming sequence-like	ENSMUST00000110879.9|Mcf2l|ENSMUSG00000031442.22|mcf.2 transforming sequence-like
mm39_v1_chr10_-_118705029_118705091	0.191179542951868	Brca1	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr17_-_25459086_25459132	0.18996323205432408	Brca1	ENSMUST00000038973.7|Gnptg|ENSMUSG00000035521.14|N-acetylglucosamine-1-phosphotransferase, gamma subunit	ENSMUST00000115154.11|Gnptg|ENSMUSG00000035521.14|N-acetylglucosamine-1-phosphotransferase, gamma subunit
mm39_v1_chr3_-_90340910_90340926	0.18718080254240166	Brca1	ENSMUST00000196530.2|Ints3|ENSMUSG00000027933.12|integrator complex subunit 3
mm39_v1_chr13_+_100788087_100788109	0.1857103773764049	Brca1	ENSMUST00000190165.7|Taf9|ENSMUSG00000052293.15|TATA-box binding protein associated factor 9	ENSMUST00000185767.7|Taf9|ENSMUSG00000052293.15|TATA-box binding protein associated factor 9
mm39_v1_chr10_-_126956991_126957019	0.18466067032980618	Brca1	ENSMUST00000080975.6|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma	ENSMUST00000164259.9|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma
mm39_v1_chr11_+_93776650_93776703	0.18340715209102432	Brca1	ENSMUST00000107853.8|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107850.8|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr19_+_53298906_53298983	0.18258906792655175	Brca1	ENSMUST00000003870.15|Mxi1|ENSMUSG00000025025.15|MAX interactor 1, dimerization protein
mm39_v1_chr2_-_152673585_152673648	0.17954421579224614	Brca1	ENSMUST00000156688.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000007803.12|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr17_+_36152559_36152576	0.1788391000670202	Brca1	ENSMUST00000174124.2|Mdc1|ENSMUSG00000061607.16|mediator of DNA damage checkpoint 1
mm39_v1_chr7_-_16761790_16761846	0.17539353108413624	Brca1	ENSMUST00000003183.12|Ppp5c|ENSMUSG00000003099.12|protein phosphatase 5, catalytic subunit
mm39_v1_chr7_+_129193581_129193601	0.17252020657884032	Brca1	ENSMUST00000084519.7|Wdr11|ENSMUSG00000042055.14|WD repeat domain 11
mm39_v1_chr19_-_12742811_12742996	0.16753119743146297	Brca1	ENSMUST00000112933.2|Cntf|ENSMUSG00000079415.3|ciliary neurotrophic factor
mm39_v1_chr17_+_47922497_47922544	0.15038187276936243	Brca1	ENSMUST00000024778.3|Med20|ENSMUSG00000092558.4|mediator complex subunit 20
mm39_v1_chr5_+_20112500_20112549	0.14990286788091234	Brca1	ENSMUST00000101558.10|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr16_-_59459745_59459806	0.147330790911339	Brca1	ENSMUST00000099646.10|Arl6|ENSMUSG00000022722.19|ADP-ribosylation factor-like 6
mm39_v1_chr9_-_45115381_45115404	0.14670536201374382	Brca1	ENSMUST00000034599.15|Tmprss4|ENSMUSG00000032091.16|transmembrane protease, serine 4
mm39_v1_chr11_-_70537878_70537889	0.14492753228858307	Brca1	ENSMUST00000014750.15|Slc25a11|ENSMUSG00000014606.15|solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11
mm39_v1_chr9_+_119956755_119956910	0.1435374331311115	Brca1	ENSMUST00000035105.7|Rpsa|ENSMUSG00000032518.7|ribosomal protein SA	ENSMUST00000217317.2|Rpsa|ENSMUSG00000032518.7|ribosomal protein SA
mm39_v1_chr17_-_33904386_33904400	0.1405954558378109	Brca1	ENSMUST00000087582.13|Hnrnpm|ENSMUSG00000059208.16|heterogeneous nuclear ribonucleoprotein M
mm39_v1_chr19_-_6191440_6191578	0.13241595386220698	Brca1	ENSMUST00000025893.7|Arl2|ENSMUSG00000024944.7|ADP-ribosylation factor-like 2
mm39_v1_chr15_+_102392586_102392627	0.12847249075682948	Brca1	ENSMUST00000229061.2|Pcbp2|ENSMUSG00000056851.15|poly(rC) binding protein 2
mm39_v1_chr17_-_34247016_34247050	0.1270894313834084	Brca1	ENSMUST00000236627.2|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000237759.2|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000045467.14|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000114303.4|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6
mm39_v1_chr17_+_41121979_41122056	0.12117905193187037	Brca1	ENSMUST00000024721.8|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein	ENSMUST00000233740.2|Rhag|ENSMUSG00000023926.9|Rhesus blood group-associated A glycoprotein
mm39_v1_chr9_+_96140750_96140764	0.11902483032283702	Brca1	ENSMUST00000186609.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr3_+_87837566_87837656	0.11784514044720004	Brca1	ENSMUST00000055984.7|Isg20l2|ENSMUSG00000048039.9|interferon stimulated exonuclease gene 20-like 2
mm39_v1_chr13_-_113317431_113317501	0.11607705289971097	Brca1	ENSMUST00000038212.14|Gzmk|ENSMUSG00000042385.15|granzyme K
mm39_v1_chr4_+_98919183_98919200	0.11396707545815778	Brca1	ENSMUST00000030280.7|Angptl3|ENSMUSG00000028553.13|angiopoietin-like 3
mm39_v1_chr5_-_5564873_5564891	0.10874797098527295	Brca1	ENSMUST00000060947.14|Cldn12|ENSMUSG00000046798.15|claudin 12
mm39_v1_chr11_+_93776965_93777045	0.10769461794350083	Brca1	ENSMUST00000063718.11|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1	ENSMUST00000107854.9|Mbtd1|ENSMUSG00000059474.14|mbt domain containing 1
mm39_v1_chr10_+_86599836_86599836	0.10751319437723987	Brca1	ENSMUST00000218802.2|Gm49358|ENSMUSG00000112743.2|predicted gene, 49358
mm39_v1_chr7_-_29772226_29772349	0.09388725634588352	Brca1	ENSMUST00000183115.8|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000182919.8|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000183190.2|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82	ENSMUST00000080834.15|Zfp82|ENSMUSG00000098022.8|zinc finger protein 82
mm39_v1_chr7_-_80597246_80597327	0.09318542918618043	Brca1	ENSMUST00000120285.8|Sec11a|ENSMUSG00000025724.13|SEC11 homolog A, signal peptidase complex subunit
mm39_v1_chr7_-_101749140_101749150	0.0869067010515726	Brca1	ENSMUST00000106934.2|Art5|ENSMUSG00000070424.13|ADP-ribosyltransferase 5
mm39_v1_chr15_-_81900335_81900372	0.08531160643624063	Brca1	ENSMUST00000152227.8|Desi1|ENSMUSG00000022472.17|desumoylating isopeptidase 1
mm39_v1_chr16_+_44215136_44215193	0.08102302395198507	Brca1	ENSMUST00000099742.9|Cfap44|ENSMUSG00000071550.15|cilia and flagella associated protein 44
mm39_v1_chr1_-_170695328_170695354	0.07799303691184434	Brca1	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chrX_+_41591410_41591439	0.07698570284718924	Brca1	ENSMUST00000005839.11|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A
mm39_v1_chr3_+_20011405_20011448	0.07628362152358194	Brca1	ENSMUST00000108325.9|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr19_+_10181378_10181378	0.07605206975153146	Brca1	ENSMUST00000040372.14|Tmem258|ENSMUSG00000036372.15|transmembrane protein 258
mm39_v1_chrX_-_100266032_100266169	0.07211707210021437	Brca1	ENSMUST00000120389.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000156473.8|Snx12|ENSMUSG00000046032.17|sorting nexin 12	ENSMUST00000077876.4|Snx12|ENSMUSG00000046032.17|sorting nexin 12
mm39_v1_chr3_+_20011251_20011296	0.0705770849404653	Brca1	ENSMUST00000108328.8|Cp|ENSMUSG00000003617.17|ceruloplasmin
mm39_v1_chr13_+_55517545_55517589	0.06896043578841166	Brca1	ENSMUST00000063771.14|Rgs14|ENSMUSG00000052087.15|regulator of G-protein signaling 14
mm39_v1_chr6_-_131667026_131667026	0.06708721829780476	Brca1	ENSMUST00000080619.3|Tas2r114|ENSMUSG00000063478.3|taste receptor, type 2, member 114
mm39_v1_chrX_+_41591476_41591637	0.06622626346127163	Brca1	ENSMUST00000115070.8|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A	ENSMUST00000153948.2|Sh2d1a|ENSMUSG00000005696.12|SH2 domain containing 1A
mm39_v1_chr5_-_87240405_87240422	0.06606616089677812	Brca1	ENSMUST00000132667.2|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36	ENSMUST00000145617.8|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36	ENSMUST00000094649.11|Ugt2b36|ENSMUSG00000070704.11|UDP glucuronosyltransferase 2 family, polypeptide B36
mm39_v1_chr3_+_5283606_5283621	0.06595552973637563	Brca1	ENSMUST00000026284.13|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr15_-_96917804_96917853	0.06583848565292677	Brca1	ENSMUST00000231039.2|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr7_-_127048165_127048249	0.06562437068271997	Brca1	ENSMUST00000106299.2|Zfp689|ENSMUSG00000048921.12|zinc finger protein 689
mm39_v1_chr2_+_29533799_29533827	0.061411298719579406	Brca1	ENSMUST00000238899.2|Rapgef1|ENSMUSG00000039844.21|Rap guanine nucleotide exchange factor (GEF) 1
mm39_v1_chr5_-_148988110_148988126	0.060202018001216134	Brca1	ENSMUST00000110505.8|Hmgb1|ENSMUSG00000066551.13|high mobility group box 1
mm39_v1_chr5_-_72800070_72800095	0.05917604387005667	Brca1	ENSMUST00000087213.12|Cnga1|ENSMUSG00000067220.13|cyclic nucleotide gated channel alpha 1
mm39_v1_chr3_+_5283577_5283604	0.05795148916054333	Brca1	ENSMUST00000175866.8|Zfhx4|ENSMUSG00000025255.19|zinc finger homeodomain 4
mm39_v1_chr17_+_43671314_43671345	0.05653477487989695	Brca1	ENSMUST00000226087.2|Adgrf5|ENSMUSG00000056492.7|adhesion G protein-coupled receptor F5
mm39_v1_chr2_-_86640362_86640362	0.05642353644160209	Brca1	ENSMUST00000216117.2|Olfr141|ENSMUSG00000078420.7|olfactory receptor 141
mm39_v1_chr16_-_58930996_58930996	0.051770053972207346	Brca1	ENSMUST00000076262.4|Olfr193|ENSMUSG00000060057.5|olfactory receptor 193
mm39_v1_chr11_-_99695272_99695272	0.05142678982704063	Brca1	ENSMUST00000105056.2|Gm11554|ENSMUSG00000078259.4|predicted gene 11554
mm39_v1_chr18_+_65183987_65184028	0.04883665269488372	Brca1	ENSMUST00000236103.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr10_-_41592630_41592630	0.04734520114923978	Brca1	ENSMUST00000189488.3|Ccdc162|ENSMUSG00000075225.16|coiled-coil domain containing 162
mm39_v1_chr4_+_109092459_109092459	0.04660229297654548	Brca1	ENSMUST00000106631.9|Calr4|ENSMUSG00000028558.15|calreticulin 4
mm39_v1_chr5_-_135092904_135092971	0.045939035853101544	Brca1	ENSMUST00000111205.8|Bud23|ENSMUSG00000005378.18|BUD23, rRNA methyltransferase and ribosome maturation factor	ENSMUST00000141309.2|Bud23|ENSMUSG00000005378.18|BUD23, rRNA methyltransferase and ribosome maturation factor
mm39_v1_chr5_+_20112704_20112764	0.043174013967853864	Brca1	ENSMUST00000115267.7|Magi2|ENSMUSG00000040003.19|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm39_v1_chr14_-_61283911_61283939	0.04297352218915456	Brca1	ENSMUST00000111234.10|Tnfrsf19|ENSMUSG00000060548.14|tumor necrosis factor receptor superfamily, member 19	ENSMUST00000224371.2|Tnfrsf19|ENSMUSG00000060548.14|tumor necrosis factor receptor superfamily, member 19
mm39_v1_chr7_-_19856504_19856504	0.04288713838319562	Brca1	ENSMUST00000079099.2|Vmn1r240|ENSMUSG00000096152.2|vomeronasal 1 receptor 240
mm39_v1_chr8_+_55024446_55024504	0.04246561072821469	Brca1	ENSMUST00000239166.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5	ENSMUST00000239106.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5	ENSMUST00000239152.2|Asb5|ENSMUSG00000031519.5|ankyrin repeat and SOCs box-containing 5
mm39_v1_chr17_+_14087827_14087878	0.04047019655684616	Brca1	ENSMUST00000239324.2|Afdn|ENSMUSG00000068036.17|afadin, adherens junction formation factor
mm39_v1_chr1_-_46893206_46893240	0.038229561931191265	Brca1	ENSMUST00000027131.6|Slc39a10|ENSMUSG00000025986.7|solute carrier family 39 (zinc transporter), member 10
mm39_v1_chrX_+_134894573_134894573	0.03479117331351665	Brca1	ENSMUST00000058119.9|Arxes2|ENSMUSG00000048040.9|adipocyte-related X-chromosome expressed sequence 2
mm39_v1_chr15_-_96918203_96918216	0.03477408741228301	Brca1	ENSMUST00000166223.2|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr4_-_118667141_118667141	0.034747988321401385	Brca1	ENSMUST00000084313.5|Olfr1335|ENSMUSG00000066061.7|olfactory receptor 1335	ENSMUST00000219094.2|Olfr1335|ENSMUSG00000066061.7|olfactory receptor 1335
mm39_v1_chr7_+_51528715_51528750	0.034444223534494146	Brca1	ENSMUST00000051912.13|Gas2|ENSMUSG00000030498.16|growth arrest specific 2
mm39_v1_chr14_-_20706556_20706608	0.03416411386107421	Brca1	ENSMUST00000090469.8|Myoz1|ENSMUSG00000068697.8|myozenin 1
mm39_v1_chr2_-_89313477_89313477	0.03408041324893561	Brca1	ENSMUST00000099778.2|Olfr1241|ENSMUSG00000075086.3|olfactory receptor 1241
mm39_v1_chr7_+_23702516_23702516	0.03341405381776625	Brca1	ENSMUST00000173571.2|V1rd19|ENSMUSG00000092456.3|vomeronasal 1 receptor, D19
mm39_v1_chr6_+_14901343_14901363	0.03225656524501331	Brca1	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr19_+_56276343_56276371	0.03165815412519901	Brca1	ENSMUST00000095948.11|Habp2|ENSMUSG00000025075.15|hyaluronic acid binding protein 2
mm39_v1_chr6_+_57086439_57086439	0.03161713580842064	Brca1	ENSMUST00000228270.2|Vmn1r10|ENSMUSG00000115181.2|vomeronasal 1 receptor 10
mm39_v1_chr2_+_85519775_85519775	0.03106654230164823	Brca1	ENSMUST00000054868.2|Olfr1008|ENSMUSG00000050603.2|olfactory receptor 1008
mm39_v1_chr3_-_59060907_59060962	0.031041066735605468	Brca1	ENSMUST00000196081.5|P2ry14|ENSMUSG00000036381.14|purinergic receptor P2Y, G-protein coupled, 14
mm39_v1_chr18_+_37138256_37138256	0.030950446180770363	Brca1	ENSMUST00000115658.6|Pcdha11|ENSMUSG00000007440.11|protocadherin alpha 11
mm39_v1_chr2_-_86086061_86086061	0.030738248130913123	Brca1	ENSMUST00000099899.3|Olfr1049|ENSMUSG00000075194.4|olfactory receptor 1049
mm39_v1_chr1_+_82891043_82891050	0.028870347485436567	Brca1	ENSMUST00000220768.2|A030005L19Rik|ENSMUSG00000113880.2|RIKEN cDNA A030005L19 gene
mm39_v1_chr7_+_29883569_29883606	0.027742671625616507	Brca1	ENSMUST00000098594.4|Cox7a1|ENSMUSG00000074218.4|cytochrome c oxidase subunit 7A1
mm39_v1_chr6_-_136758716_136758804	0.02696854950586371	Brca1	ENSMUST00000078095.11|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c	ENSMUST00000032338.10|Gucy2c|ENSMUSG00000042638.15|guanylate cyclase 2c
mm39_v1_chr6_+_68518603_68518642	0.025789225744516583	Brca1	ENSMUST00000168090.3|Igkv1-99|ENSMUSG00000076525.4|immunoglobulin kappa variable 1-99	ENSMUST00000103326.3|Igkv1-99|ENSMUSG00000076525.4|immunoglobulin kappa variable 1-99
mm39_v1_chr13_+_42834989_42835062	0.02530793614443771	Brca1	ENSMUST00000149235.8|Phactr1|ENSMUSG00000054728.18|phosphatase and actin regulator 1
mm39_v1_chr11_+_58471639_58471639	0.024616034545613574	Brca1	ENSMUST00000169428.5|Olfr325|ENSMUSG00000060765.9|olfactory receptor 325
mm39_v1_chr10_-_129010923_129010923	0.024596645508536467	Brca1	ENSMUST00000169800.4|Olfr772|ENSMUSG00000107662.3|olfactory receptor 772
mm39_v1_chr14_-_70757601_70757628	0.024347836351875745	Brca1	ENSMUST00000022693.9|Bmp1|ENSMUSG00000022098.11|bone morphogenetic protein 1
mm39_v1_chr12_-_108145498_108145594	0.023522254754761527	Brca1	ENSMUST00000071095.14|Setd3|ENSMUSG00000056770.16|SET domain containing 3
mm39_v1_chr5_+_67126304_67126475	0.022660841074742408	Brca1	ENSMUST00000132991.5|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr16_+_41353212_41353228	0.022407815853111086	Brca1	ENSMUST00000078873.11|Lsamp|ENSMUSG00000061080.12|limbic system-associated membrane protein
mm39_v1_chr8_+_41128099_41128128	0.022186707020397867	Brca1	ENSMUST00000051614.5|Adam24|ENSMUSG00000046723.5|a disintegrin and metallopeptidase domain 24 (testase 1)
mm39_v1_chr1_+_187995096_187995231	0.022160855162339076	Brca1	ENSMUST00000060479.14|Ush2a|ENSMUSG00000026609.16|usherin
mm39_v1_chr13_-_23068375_23068375	0.018825333150541763	Brca1	ENSMUST00000095960.5|Vmn1r212|ENSMUSG00000071490.6|vomeronasal 1 receptor 212
mm39_v1_chr4_+_148085179_148085211	0.01873961131707704	Brca1	ENSMUST00000103230.5|Nppa|ENSMUSG00000041616.10|natriuretic peptide type A
mm39_v1_chr11_-_99706484_99706492	0.017521756654309103	Brca1	ENSMUST00000105055.2|Gm11564|ENSMUSG00000078258.2|predicted gene 11564
mm39_v1_chr7_-_29605504_29605562	0.017518156820632676	Brca1	ENSMUST00000053521.15|Zfp27|ENSMUSG00000062040.15|zinc finger protein 27
mm39_v1_chr7_-_108493612_108493627	0.016688934180566137	Brca1	ENSMUST00000202706.2|Olfr519|ENSMUSG00000066239.3|olfactory receptor 519	ENSMUST00000084752.2|Olfr519|ENSMUSG00000066239.3|olfactory receptor 519
mm39_v1_chr9_-_19966757_19966757	0.016403729588760685	Brca1	ENSMUST00000060780.3|Olfr867|ENSMUSG00000044454.6|olfactory receptor 867
mm39_v1_chr12_-_12990584_12990617	0.016165913057018987	Brca1	ENSMUST00000130990.2|Mycn|ENSMUSG00000037169.16|v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived
mm39_v1_chr19_+_56276375_56276428	0.01605679311455771	Brca1	ENSMUST00000166049.8|Habp2|ENSMUSG00000025075.15|hyaluronic acid binding protein 2
mm39_v1_chr10_-_129802567_129802567	0.015944082917151263	Brca1	ENSMUST00000167974.2|Olfr819|ENSMUSG00000094295.4|olfactory receptor 819
mm39_v1_chr8_-_96580129_96580170	0.014907780377068245	Brca1	ENSMUST00000212628.2|Slc38a7|ENSMUSG00000036534.7|solute carrier family 38, member 7	ENSMUST00000040481.4|Slc38a7|ENSMUSG00000036534.7|solute carrier family 38, member 7	ENSMUST00000212270.2|Slc38a7|ENSMUSG00000036534.7|solute carrier family 38, member 7
mm39_v1_chr9_+_38164715_38164715	0.01488508000775701	Brca1	ENSMUST00000093865.3|Olfr143|ENSMUSG00000094778.4|olfactory receptor 143
mm39_v1_chr5_+_67125902_67125920	0.014342801897335247	Brca1	ENSMUST00000127184.8|Limch1|ENSMUSG00000037736.21|LIM and calponin homology domains 1
mm39_v1_chr11_+_49414548_49414548	0.013713867885280931	Brca1	ENSMUST00000077143.7|Olfr1383|ENSMUSG00000107417.3|olfactory receptor 1383
mm39_v1_chr16_-_59104858_59104858	0.013591766923531501	Brca1	ENSMUST00000049859.2|Olfr202|ENSMUSG00000048810.3|olfactory receptor 202
mm39_v1_chr5_+_92535705_92535751	0.013015593226324432	Brca1	ENSMUST00000138687.2|Art3|ENSMUSG00000034842.17|ADP-ribosyltransferase 3	ENSMUST00000124509.2|Art3|ENSMUSG00000034842.17|ADP-ribosyltransferase 3
mm39_v1_chr13_+_4486105_4486145	0.01235424489531165	Brca1	ENSMUST00000156277.2|Akr1c6|ENSMUSG00000021210.17|aldo-keto reductase family 1, member C6
mm39_v1_chr10_-_77578472_77578517	0.012269594872084016	Brca1	ENSMUST00000218133.2|Gm18596|ENSMUSG00000112864.2|predicted gene, 18596
mm39_v1_chr11_+_58721982_58721982	0.011933885504948862	Brca1	ENSMUST00000078217.2|Olfr312|ENSMUSG00000096806.3|olfactory receptor 312
mm39_v1_chr4_+_85972125_85972250	0.011772143630282237	Brca1	ENSMUST00000107178.9|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1	ENSMUST00000048885.12|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1	ENSMUST00000141889.8|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1	ENSMUST00000120678.2|Adamtsl1|ENSMUSG00000066113.17|ADAMTS-like 1
mm39_v1_chr17_-_90395568_90395642	0.010992365329521811	Brca1	ENSMUST00000173222.2|Nrxn1|ENSMUSG00000024109.19|neurexin I
mm39_v1_chr17_-_16050913_16051060	0.01092209352415784	Brca1	ENSMUST00000231281.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr13_+_24054267_24054291	0.010848129108828134	Brca1	ENSMUST00000006785.8|Slc17a1|ENSMUSG00000021335.14|solute carrier family 17 (sodium phosphate), member 1
mm39_v1_chr4_-_25242858_25242876	0.010728692299003344	Brca1	ENSMUST00000029922.14|Fhl5|ENSMUSG00000028259.14|four and a half LIM domains 5	ENSMUST00000108204.2|Fhl5|ENSMUSG00000028259.14|four and a half LIM domains 5
mm39_v1_chr8_-_43760017_43760053	0.010578764972796317	Brca1	ENSMUST00000082120.5|Zfp42|ENSMUSG00000051176.7|zinc finger protein 42
mm39_v1_chrX_-_74886623_74886669	0.010485519432836212	Brca1	ENSMUST00000114057.8|Pls3|ENSMUSG00000016382.16|plastin 3 (T-isoform)
mm39_v1_chr7_+_104236926_104236926	0.010135661893210761	Brca1	ENSMUST00000098173.5|Olfr654|ENSMUSG00000073925.6|olfactory receptor 654	ENSMUST00000210457.2|Olfr654|ENSMUSG00000073925.6|olfactory receptor 654
mm39_v1_chr7_+_102423702_102423702	0.009837784991231235	Brca1	ENSMUST00000098217.3|Olfr561|ENSMUSG00000073966.4|olfactory receptor 561
mm39_v1_chr12_+_113507528_113507528	0.009823650473729923	Brca1	ENSMUST00000053086.3|Adam6a|ENSMUSG00000043945.5|a disintegrin and metallopeptidase domain 6A
mm39_v1_chr5_+_93004330_93004370	0.009724213385937569	Brca1	ENSMUST00000225438.2|Shroom3|ENSMUSG00000029381.17|shroom family member 3
mm39_v1_chr17_+_37982916_37982916	0.00881645102216865	Brca1	ENSMUST00000122036.2|Olfr118|ENSMUSG00000080990.3|olfactory receptor 118
mm39_v1_chr6_-_23248361_23248390	0.00876093414373888	Brca1	ENSMUST00000031709.7|Fezf1|ENSMUSG00000029697.7|Fez family zinc finger 1
mm39_v1_chr11_+_101221895_101221895	0.008369266061979722	Brca1	ENSMUST00000017316.7|Aoc3|ENSMUSG00000019326.15|amine oxidase, copper containing 3
mm39_v1_chr18_-_47466378_47466439	0.008099466951470558	Brca1	ENSMUST00000126684.2|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000156422.8|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr8_-_68514879_68515033	0.007850018342391294	Brca1	ENSMUST00000212505.2|Psd3|ENSMUSG00000030465.20|pleckstrin and Sec7 domain containing 3
mm39_v1_chr13_-_22286934_22286934	0.007291954744961469	Brca1	ENSMUST00000186062.3|Vmn1r189|ENSMUSG00000099611.3|vomeronasal 1 receptor 189
mm39_v1_chr11_-_41891359_41891421	0.007119849378074903	Brca1	ENSMUST00000070735.10|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr13_-_95359955_95360063	0.006524262512395125	Brca1	ENSMUST00000159608.8|Pde8b|ENSMUSG00000021684.18|phosphodiesterase 8B
mm39_v1_chr2_-_77000878_77000933	0.006210260427599767	Brca1	ENSMUST00000111833.3|Ccdc141|ENSMUSG00000044033.17|coiled-coil domain containing 141
mm39_v1_chr6_-_55109960_55109999	0.005578545547921096	Brca1	ENSMUST00000003568.15|Crhr2|ENSMUSG00000003476.17|corticotropin releasing hormone receptor 2
mm39_v1_chr2_-_73605387_73605456	0.005549118964852371	Brca1	ENSMUST00000166199.9|Chn1|ENSMUSG00000056486.19|chimerin 1
mm39_v1_chr11_+_59197746_59197761	0.004988023321573806	Brca1	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr7_+_50248918_50248949	0.004979189935421895	Brca1	ENSMUST00000119710.3|4933405O20Rik|ENSMUSG00000084234.3|RIKEN cDNA 4933405O20 gene
mm39_v1_chr6_-_133830613_133830725	0.004771148334112241	Brca1	ENSMUST00000203168.2|Kap|ENSMUSG00000032758.5|kidney androgen regulated protein	ENSMUST00000048032.5|Kap|ENSMUSG00000032758.5|kidney androgen regulated protein
mm39_v1_chr4_+_106768662_106768708	0.004516540488657339	Brca1	ENSMUST00000030367.15|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3	ENSMUST00000149926.8|Ssbp3|ENSMUSG00000061887.15|single-stranded DNA binding protein 3
mm39_v1_chr11_-_41891111_41891183	0.004350681916075894	Brca1	ENSMUST00000109290.2|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr5_+_16139683_16139694	0.004213088068093045	Brca1	ENSMUST00000167946.9|Cacna2d1|ENSMUSG00000040118.16|calcium channel, voltage-dependent, alpha2/delta subunit 1
mm39_v1_chr2_-_155787197_155787287	0.0038333485530713932	Brca1	ENSMUST00000040162.3|Gdf5|ENSMUSG00000038259.5|growth differentiation factor 5
mm39_v1_chr6_-_141892686_141892691	0.003557887506915896	Brca1	ENSMUST00000042119.6|Slco1a1|ENSMUSG00000041698.12|solute carrier organic anion transporter family, member 1a1
mm39_v1_chr17_-_16051295_16051365	0.0031465085326464024	Brca1	ENSMUST00000231985.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr7_-_104609937_104609937	0.0031401456522855238	Brca1	ENSMUST00000050482.3|Olfr670|ENSMUSG00000044705.4|olfactory receptor 670
mm39_v1_chr1_+_37068429_37068465	0.0024476853226931845	Brca1	ENSMUST00000162449.7|Vwa3b|ENSMUSG00000050122.20|von Willebrand factor A domain containing 3B
mm39_v1_chr6_+_14901439_14901531	0.0020850283344972837	Brca1	ENSMUST00000128567.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr9_+_38019424_38019424	0.001912087427019397	Brca1	ENSMUST00000211851.3|Olfr888|ENSMUSG00000095527.4|olfactory receptor 888
mm39_v1_chr11_+_49184124_49184124	0.0017665199350381563	Brca1	ENSMUST00000189851.3|Olfr1392|ENSMUSG00000101750.4|olfactory receptor 1392
mm39_v1_chr11_-_99328969_99328985	0.0016672466217098232	Brca1	ENSMUST00000017743.3|Krt20|ENSMUSG00000035775.3|keratin 20
mm39_v1_chr3_-_106733603_106733603	6.199670471263686e-06	Brca1	ENSMUST00000213616.3|Olfr266|ENSMUSG00000043529.5|olfactory receptor 266
