mm39_v1_chr19_+_44282113_44282113	0.341231963740132	CAGUAGU	ENSMUST00000026221.7|Scd2|ENSMUSG00000025203.7|stearoyl-Coenzyme A desaturase 2
mm39_v1_chr5_-_140816111_140816223	0.21524908424007116	CAGUAGU	ENSMUST00000000153.9|Gna12|ENSMUSG00000000149.11|guanine nucleotide binding protein, alpha 12
mm39_v1_chr4_-_154721288_154721330	0.2103956240301495	CAGUAGU	ENSMUST00000030902.13|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105637.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000070313.14|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105636.8|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000105638.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000097759.9|Prdm16|ENSMUSG00000039410.17|PR domain containing 16	ENSMUST00000124771.2|Prdm16|ENSMUSG00000039410.17|PR domain containing 16
mm39_v1_chr18_+_35962832_35962849	0.20807519681056283	CAGUAGU	ENSMUST00000060722.8|Cxxc5|ENSMUSG00000046668.10|CXXC finger 5
mm39_v1_chr1_-_16689660_16689713	0.19658783822272044	CAGUAGU	ENSMUST00000117146.9|Ube2w|ENSMUSG00000025939.20|ubiquitin-conjugating enzyme E2W (putative)
mm39_v1_chr9_-_56068282_56068360	0.18284122245228246	CAGUAGU	ENSMUST00000034876.10|Tspan3|ENSMUSG00000032324.12|tetraspanin 3
mm39_v1_chr11_-_31320065_31320081	0.17320383251556606	CAGUAGU	ENSMUST00000020546.3|Stc2|ENSMUSG00000020303.3|stanniocalcin 2
mm39_v1_chr3_-_135129686_135129845	0.1550135510619897	CAGUAGU	ENSMUST00000029815.8|Cisd2|ENSMUSG00000028165.10|CDGSH iron sulfur domain 2
mm39_v1_chr6_-_52203146_52203176	0.15429394766124888	CAGUAGU	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr12_+_33003882_33003890	0.1523720140608181	CAGUAGU	ENSMUST00000076698.13|Sypl|ENSMUSG00000020570.16|synaptophysin-like protein
mm39_v1_chr13_+_108452866_108452892	0.14518424858876203	CAGUAGU	ENSMUST00000051594.12|Depdc1b|ENSMUSG00000021697.13|DEP domain containing 1B
mm39_v1_chr11_-_76737794_76737871	0.13461843403324983	CAGUAGU	ENSMUST00000021201.6|Cpd|ENSMUSG00000020841.6|carboxypeptidase D
mm39_v1_chr11_+_79883885_79883963	0.1320121111728411	CAGUAGU	ENSMUST00000163272.2|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit	ENSMUST00000017692.15|Suz12|ENSMUSG00000017548.16|SUZ12 polycomb repressive complex 2 subunit
mm39_v1_chr19_-_32717166_32717194	0.13167755726767402	CAGUAGU	ENSMUST00000235142.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000070210.6|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000236011.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1
mm39_v1_chr4_-_151142351_151142444	0.1167910093652723	CAGUAGU	ENSMUST00000030797.4|Vamp3|ENSMUSG00000028955.4|vesicle-associated membrane protein 3
mm39_v1_chr15_+_58805605_58805685	0.11404449412864198	CAGUAGU	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr2_+_48704121_48704187	0.11362096072053733	CAGUAGU	ENSMUST00000063886.4|Acvr2a|ENSMUSG00000052155.6|activin receptor IIA
mm39_v1_chr12_+_72807985_72808090	0.11096236086510018	CAGUAGU	ENSMUST00000021514.10|Ppm1a|ENSMUSG00000021096.12|protein phosphatase 1A, magnesium dependent, alpha isoform
mm39_v1_chr7_+_130179063_130179214	0.10971717927495957	CAGUAGU	ENSMUST00000207918.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000215492.2|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000084513.12|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2	ENSMUST00000059145.14|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr16_+_10884156_10884247	0.10839580821817478	CAGUAGU	ENSMUST00000089011.6|Snn|ENSMUSG00000037972.8|stannin
mm39_v1_chr5_+_108213608_108213634	0.10755225712032501	CAGUAGU	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr6_-_148847854_148847995	0.1075479588983008	CAGUAGU	ENSMUST00000139355.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000146457.2|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000054080.15|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr1_-_95595280_95595323	0.10464430300961464	CAGUAGU	ENSMUST00000043336.11|St8sia4|ENSMUSG00000040710.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
mm39_v1_chr4_-_57301791_57301837	0.10108465567765386	CAGUAGU	ENSMUST00000075637.11|Ptpn3|ENSMUSG00000038764.15|protein tyrosine phosphatase, non-receptor type 3
mm39_v1_chr2_+_71617266_71617322	0.09701894324646808	CAGUAGU	ENSMUST00000112101.8|Itga6|ENSMUSG00000027111.17|integrin alpha 6	ENSMUST00000028522.10|Itga6|ENSMUSG00000027111.17|integrin alpha 6
mm39_v1_chr2_+_120807498_120807588	0.0883222390922432	CAGUAGU	ENSMUST00000067582.14|Tmem62|ENSMUSG00000054484.15|transmembrane protein 62
mm39_v1_chr12_+_3857001_3857064	0.08483601852039219	CAGUAGU	ENSMUST00000020991.15|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A	ENSMUST00000172509.8|Dnmt3a|ENSMUSG00000020661.16|DNA methyltransferase 3A
mm39_v1_chr2_+_153583194_153583214	0.08445506726300608	CAGUAGU	ENSMUST00000028981.9|Mapre1|ENSMUSG00000027479.15|microtubule-associated protein, RP/EB family, member 1
mm39_v1_chr5_+_21577640_21577711	0.08281794766089919	CAGUAGU	ENSMUST00000035799.6|Fgl2|ENSMUSG00000039899.6|fibrinogen-like protein 2
mm39_v1_chr14_+_26959975_26960003	0.08207744170357521	CAGUAGU	ENSMUST00000049206.6|Arhgef3|ENSMUSG00000021895.11|Rho guanine nucleotide exchange factor (GEF) 3
mm39_v1_chr5_-_92231314_92231416	0.08205618641329118	CAGUAGU	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr4_+_97665843_97665870	0.08120559860288876	CAGUAGU	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr2_-_94268426_94268506	0.07949526895524058	CAGUAGU	ENSMUST00000028617.7|Api5|ENSMUSG00000027193.13|apoptosis inhibitor 5
mm39_v1_chr5_+_121535999_121536072	0.07662973014436175	CAGUAGU	ENSMUST00000042163.15|Naa25|ENSMUSG00000042719.18|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm39_v1_chr6_+_140568366_140568389	0.07657246865873796	CAGUAGU	ENSMUST00000032359.15|Aebp2|ENSMUSG00000030232.19|AE binding protein 2
mm39_v1_chr1_-_182169150_182169190	0.07638044566938991	CAGUAGU	ENSMUST00000051431.10|Fbxo28|ENSMUSG00000047539.10|F-box protein 28
mm39_v1_chr10_+_92996686_92996756	0.07556982143759294	CAGUAGU	ENSMUST00000069965.9|Cdk17|ENSMUSG00000020015.11|cyclin-dependent kinase 17
mm39_v1_chr9_+_70586232_70586292	0.07524746698739702	CAGUAGU	ENSMUST00000067880.13|Adam10|ENSMUSG00000054693.15|a disintegrin and metallopeptidase domain 10
mm39_v1_chr4_-_131565542_131565603	0.07409248907812527	CAGUAGU	ENSMUST00000030741.9|Ptpru|ENSMUSG00000028909.18|protein tyrosine phosphatase, receptor type, U	ENSMUST00000105987.9|Ptpru|ENSMUSG00000028909.18|protein tyrosine phosphatase, receptor type, U
mm39_v1_chr17_-_12537635_12537690	0.07176802887076725	CAGUAGU	ENSMUST00000233755.2|Map3k4|ENSMUSG00000014426.10|mitogen-activated protein kinase kinase kinase 4	ENSMUST00000089058.7|Map3k4|ENSMUSG00000014426.10|mitogen-activated protein kinase kinase kinase 4
mm39_v1_chr9_-_79625800_79625854	0.06889783274535471	CAGUAGU	ENSMUST00000071750.13|Col12a1|ENSMUSG00000032332.18|collagen, type XII, alpha 1
mm39_v1_chr2_-_131987008_131987037	0.06866880112350725	CAGUAGU	ENSMUST00000028815.15|Slc23a2|ENSMUSG00000027340.16|solute carrier family 23 (nucleobase transporters), member 2
mm39_v1_chr6_-_39396691_39396735	0.0658003895697541	CAGUAGU	ENSMUST00000146785.8|Mkrn1|ENSMUSG00000029922.16|makorin, ring finger protein, 1	ENSMUST00000114823.8|Mkrn1|ENSMUSG00000029922.16|makorin, ring finger protein, 1
mm39_v1_chr11_-_97078698_97078752	0.06349606881664509	CAGUAGU	ENSMUST00000001479.5|Kpnb1|ENSMUSG00000001440.6|karyopherin (importin) beta 1
mm39_v1_chr9_-_77452152_77452196	0.05718551837436333	CAGUAGU	ENSMUST00000183873.8|Lrrc1|ENSMUSG00000032352.17|leucine rich repeat containing 1
mm39_v1_chr2_+_112209548_112209598	0.055878136880106656	CAGUAGU	ENSMUST00000028552.4|Katnbl1|ENSMUSG00000027132.4|katanin p80 subunit B like 1
mm39_v1_chr12_-_46865709_46865720	0.05496003445985447	CAGUAGU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr12_-_75642969_75643036	0.054938621801955946	CAGUAGU	ENSMUST00000021447.9|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon	ENSMUST00000220035.2|Ppp2r5e|ENSMUSG00000021051.11|protein phosphatase 2, regulatory subunit B', epsilon
mm39_v1_chr19_+_27194757_27194825	0.0547011180214638	CAGUAGU	ENSMUST00000047645.13|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor	ENSMUST00000167487.8|Vldlr|ENSMUSG00000024924.15|very low density lipoprotein receptor
mm39_v1_chr3_+_34074048_34074092	0.05398445926784941	CAGUAGU	ENSMUST00000001620.13|Fxr1|ENSMUSG00000027680.16|fragile X mental retardation gene 1, autosomal homolog
mm39_v1_chr9_-_31123083_31123120	0.05282272313470119	CAGUAGU	ENSMUST00000217641.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000072634.15|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000079758.9|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2	ENSMUST00000213254.2|Aplp2|ENSMUSG00000031996.18|amyloid beta (A4) precursor-like protein 2
mm39_v1_chr4_-_118148537_118148602	0.05259997912359687	CAGUAGU	ENSMUST00000049074.13|Ptprf|ENSMUSG00000033295.15|protein tyrosine phosphatase, receptor type, F
mm39_v1_chr11_+_80367839_80367910	0.052522997741182346	CAGUAGU	ENSMUST00000053413.12|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)	ENSMUST00000147694.2|Cdk5r1|ENSMUSG00000048895.14|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm39_v1_chr6_-_5298455_5298476	0.05240809761437218	CAGUAGU	ENSMUST00000057792.9|Pon2|ENSMUSG00000032667.18|paraoxonase 2
mm39_v1_chr1_-_43866910_43866960	0.051965956101685425	CAGUAGU	ENSMUST00000153317.6|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000128261.2|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000126008.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1	ENSMUST00000139451.8|Uxs1|ENSMUSG00000057363.13|UDP-glucuronate decarboxylase 1
mm39_v1_chr7_-_101899294_101899331	0.05188472139435466	CAGUAGU	ENSMUST00000106923.2|Rhog|ENSMUSG00000073982.12|ras homolog family member G	ENSMUST00000098230.11|Rhog|ENSMUSG00000073982.12|ras homolog family member G
mm39_v1_chrX_-_165992311_165992475	0.05172300202387659	CAGUAGU	ENSMUST00000112172.4|Tmsb4x|ENSMUSG00000049775.17|thymosin, beta 4, X chromosome
mm39_v1_chr14_-_40688764_40688834	0.051388017067465076	CAGUAGU	ENSMUST00000047652.6|Tspan14|ENSMUSG00000037824.7|tetraspanin 14
mm39_v1_chr5_+_54155814_54155841	0.04978676608182934	CAGUAGU	ENSMUST00000117661.9|Stim2|ENSMUSG00000039156.20|stromal interaction molecule 2
mm39_v1_chr1_+_43137852_43137871	0.04876425807107438	CAGUAGU	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chr3_-_108322868_108322868	0.04798529145657155	CAGUAGU	ENSMUST00000090558.10|Celsr2|ENSMUSG00000068740.14|cadherin, EGF LAG seven-pass G-type receptor 2
mm39_v1_chr16_+_58228806_58228886	0.047964893260366986	CAGUAGU	ENSMUST00000046663.8|Dcbld2|ENSMUSG00000035107.14|discoidin, CUB and LCCL domain containing 2
mm39_v1_chr12_-_54909568_54909706	0.04775301113721954	CAGUAGU	ENSMUST00000078124.8|Cfl2|ENSMUSG00000062929.9|cofilin 2, muscle
mm39_v1_chr16_-_22084700_22084755	0.045767174526003596	CAGUAGU	ENSMUST00000161286.8|Tra2b|ENSMUSG00000022858.17|transformer 2 beta
mm39_v1_chr12_-_108241392_108241476	0.045680383998671525	CAGUAGU	ENSMUST00000136175.3|Ccdc85c|ENSMUSG00000084883.3|coiled-coil domain containing 85C
mm39_v1_chr4_+_139302009_139302036	0.04515236030176271	CAGUAGU	ENSMUST00000174078.2|Iffo2|ENSMUSG00000041025.16|intermediate filament family orphan 2
mm39_v1_chr10_-_53252210_53252261	0.04389508722021896	CAGUAGU	ENSMUST00000095691.7|Cep85l|ENSMUSG00000038594.10|centrosomal protein 85-like
mm39_v1_chr2_-_6889783_6889807	0.04148425909698306	CAGUAGU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr2_-_58247764_58247907	0.03878802929669184	CAGUAGU	ENSMUST00000112608.9|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000112607.3|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC	ENSMUST00000028178.14|Acvr1c|ENSMUSG00000026834.14|activin A receptor, type IC
mm39_v1_chr2_-_104324745_104324809	0.03860243155427864	CAGUAGU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr18_+_61688329_61688361	0.03853738618013082	CAGUAGU	ENSMUST00000165123.8|Csnk1a1|ENSMUSG00000024576.15|casein kinase 1, alpha 1
mm39_v1_chr12_-_119202527_119202599	0.038086416769402595	CAGUAGU	ENSMUST00000026360.9|Itgb8|ENSMUSG00000025321.15|integrin beta 8
mm39_v1_chr1_+_157334298_157334346	0.036671785365930624	CAGUAGU	ENSMUST00000086130.9|Sec16b|ENSMUSG00000026589.15|SEC16 homolog B (S. cerevisiae)
mm39_v1_chr1_-_161078723_161078789	0.03656854371668759	CAGUAGU	ENSMUST00000051925.5|Prdx6|ENSMUSG00000026701.16|peroxiredoxin 6	ENSMUST00000071718.12|Prdx6|ENSMUSG00000026701.16|peroxiredoxin 6
mm39_v1_chr1_-_165762469_165762605	0.03642201587044148	CAGUAGU	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr4_+_101276474_101276547	0.03603875581637819	CAGUAGU	ENSMUST00000102780.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106946.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4	ENSMUST00000106945.8|Ak4|ENSMUSG00000028527.19|adenylate kinase 4
mm39_v1_chr1_+_180553569_180553669	0.03592021444348832	CAGUAGU	ENSMUST00000027780.6|Acbd3|ENSMUSG00000026499.6|acyl-Coenzyme A binding domain containing 3
mm39_v1_chr4_-_129566505_129566567	0.03447120338082131	CAGUAGU	ENSMUST00000102590.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr15_-_63932288_63932327	0.03343192247501855	CAGUAGU	ENSMUST00000063838.11|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B	ENSMUST00000228908.2|Cyrib|ENSMUSG00000022378.15|CYFIP related Rac1 interactor B
mm39_v1_chr3_+_60408600_60408663	0.03329019695322825	CAGUAGU	ENSMUST00000099087.8|Mbnl1|ENSMUSG00000027763.14|muscleblind like splicing factor 1
mm39_v1_chr12_+_81073573_81073602	0.03261810085294928	CAGUAGU	ENSMUST00000110347.9|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000021564.11|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1	ENSMUST00000129362.2|Smoc1|ENSMUSG00000021136.14|SPARC related  modular calcium binding 1
mm39_v1_chr14_-_67309866_67309925	0.031405929984765754	CAGUAGU	ENSMUST00000225380.2|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha	ENSMUST00000089230.7|Ppp2r2a|ENSMUSG00000022052.10|protein phosphatase 2, regulatory subunit B, alpha
mm39_v1_chr10_+_108167973_108168020	0.030878582734892527	CAGUAGU	ENSMUST00000095313.5|Pawr|ENSMUSG00000035873.9|PRKC, apoptosis, WT1, regulator
mm39_v1_chr4_+_53713998_53714199	0.03069993452016206	CAGUAGU	ENSMUST00000128667.8|Fktn|ENSMUSG00000028414.18|fukutin	ENSMUST00000221657.2|Fktn|ENSMUSG00000028414.18|fukutin
mm39_v1_chr5_+_75312939_75312967	0.02938427627171733	CAGUAGU	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr12_+_117480099_117480148	0.026571431587258935	CAGUAGU	ENSMUST00000109691.4|Rapgef5|ENSMUSG00000041992.10|Rap guanine nucleotide exchange factor (GEF) 5
mm39_v1_chr11_+_7013422_7013489	0.02640526942876592	CAGUAGU	ENSMUST00000020706.5|Adcy1|ENSMUSG00000020431.6|adenylate cyclase 1
mm39_v1_chr8_+_110595216_110595243	0.02607906653974683	CAGUAGU	ENSMUST00000179721.8|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2	ENSMUST00000034175.5|Phlpp2|ENSMUSG00000031732.13|PH domain and leucine rich repeat protein phosphatase 2
mm39_v1_chr1_+_151631088_151631148	0.025760728912963268	CAGUAGU	ENSMUST00000188145.7|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3	ENSMUST00000059498.12|Edem3|ENSMUSG00000043019.13|ER degradation enhancer, mannosidase alpha-like 3
mm39_v1_chr6_+_143112936_143113026	0.02558789198497471	CAGUAGU	ENSMUST00000204947.3|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000032413.7|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1	ENSMUST00000205256.2|Etnk1|ENSMUSG00000030275.7|ethanolamine kinase 1
mm39_v1_chr3_+_157653051_157653148	0.02499175632999106	CAGUAGU	ENSMUST00000164582.4|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c	ENSMUST00000040787.13|Ankrd13c|ENSMUSG00000039988.15|ankyrin repeat domain 13c
mm39_v1_chr6_+_29348068_29348123	0.02491217267335486	CAGUAGU	ENSMUST00000173216.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000173694.5|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000172974.8|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000031779.17|Calu|ENSMUSG00000029767.17|calumenin	ENSMUST00000090481.14|Calu|ENSMUSG00000029767.17|calumenin
mm39_v1_chr10_+_111309020_111309108	0.024711939015311872	CAGUAGU	ENSMUST00000065917.16|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000219961.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1	ENSMUST00000217908.2|Nap1l1|ENSMUSG00000058799.17|nucleosome assembly protein 1-like 1
mm39_v1_chr5_+_13449276_13449350	0.0243966636189589	CAGUAGU	ENSMUST00000030714.9|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	ENSMUST00000141968.2|Sema3a|ENSMUSG00000028883.20|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm39_v1_chrX_+_135950334_135950415	0.02391926219444902	CAGUAGU	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr11_-_84761538_84761636	0.023646700848058946	CAGUAGU	ENSMUST00000170741.2|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2	ENSMUST00000172405.8|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2	ENSMUST00000100686.10|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2	ENSMUST00000108081.9|Ggnbp2|ENSMUSG00000020530.15|gametogenetin binding protein 2
mm39_v1_chr10_+_77441880_77441931	0.02308406455750263	CAGUAGU	ENSMUST00000020501.15|Sumo3|ENSMUSG00000020265.17|small ubiquitin-like modifier 3
mm39_v1_chr18_-_81029986_81029986	0.023030114028532944	CAGUAGU	ENSMUST00000057950.9|Sall3|ENSMUSG00000024565.11|spalt like transcription factor 3
mm39_v1_chr5_+_73450127_73450189	0.021977730606311283	CAGUAGU	ENSMUST00000071081.13|Ociad1|ENSMUSG00000029152.14|OCIA domain containing 1	ENSMUST00000031038.11|Ociad1|ENSMUSG00000029152.14|OCIA domain containing 1	ENSMUST00000166823.5|Ociad1|ENSMUSG00000029152.14|OCIA domain containing 1	ENSMUST00000202250.4|Ociad1|ENSMUSG00000029152.14|OCIA domain containing 1	ENSMUST00000201556.4|Ociad1|ENSMUSG00000029152.14|OCIA domain containing 1	ENSMUST00000202237.4|Ociad1|ENSMUSG00000029152.14|OCIA domain containing 1
mm39_v1_chr1_-_151965876_151965918	0.021199637985245788	CAGUAGU	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr18_+_23548455_23548511	0.020001556267856033	CAGUAGU	ENSMUST00000115832.4|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr17_-_87573294_87573363	0.01984662443373932	CAGUAGU	ENSMUST00000145895.8|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000129616.8|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000155904.2|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000151155.8|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000144236.9|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2	ENSMUST00000024963.11|Mcfd2|ENSMUSG00000024150.13|multiple coagulation factor deficiency 2
mm39_v1_chr16_-_43959559_43959668	0.01876840259905639	CAGUAGU	ENSMUST00000063661.13|Atp6v1a|ENSMUSG00000052459.14|ATPase, H+ transporting, lysosomal V1 subunit A	ENSMUST00000114666.9|Atp6v1a|ENSMUSG00000052459.14|ATPase, H+ transporting, lysosomal V1 subunit A
mm39_v1_chr2_-_115896279_115896334	0.018574416550904096	CAGUAGU	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr9_-_16289527_16289527	0.018553896991168526	CAGUAGU	ENSMUST00000082170.6|Fat3|ENSMUSG00000074505.7|FAT atypical cadherin 3
mm39_v1_chr4_-_137084973_137085033	0.01729230871827166	CAGUAGU	ENSMUST00000030417.10|Cdc42|ENSMUSG00000006699.18|cell division cycle 42	ENSMUST00000051477.13|Cdc42|ENSMUSG00000006699.18|cell division cycle 42
mm39_v1_chr14_-_33169099_33169138	0.016144458663021537	CAGUAGU	ENSMUST00000111944.10|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000022504.12|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8	ENSMUST00000111945.9|Mapk8|ENSMUSG00000021936.15|mitogen-activated protein kinase 8
mm39_v1_chr11_+_115714853_115714923	0.015523732737742626	CAGUAGU	ENSMUST00000103032.11|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000133250.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component	ENSMUST00000177736.8|Llgl2|ENSMUSG00000020782.19|LLGL2 scribble cell polarity complex component
mm39_v1_chr11_+_75623695_75623795	0.01518296467122276	CAGUAGU	ENSMUST00000067664.10|Ywhae|ENSMUSG00000020849.14|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm39_v1_chr2_-_140513382_140513399	0.014024443378418858	CAGUAGU	ENSMUST00000110057.3|Flrt3|ENSMUSG00000051379.13|fibronectin leucine rich transmembrane protein 3
mm39_v1_chr14_-_110992533_110992584	0.013927311914370452	CAGUAGU	ENSMUST00000078386.4|Slitrk6|ENSMUSG00000045871.6|SLIT and NTRK-like family, member 6
mm39_v1_chr19_+_53128861_53128880	0.013654952289135177	CAGUAGU	ENSMUST00000111741.10|Add3|ENSMUSG00000025026.16|adducin 3 (gamma)
mm39_v1_chr1_+_7159134_7159217	0.013264775128529518	CAGUAGU	ENSMUST00000061280.17|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	ENSMUST00000182114.8|Pcmtd1|ENSMUSG00000051285.18|protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
mm39_v1_chr12_+_34007645_34007670	0.013034385835066071	CAGUAGU	ENSMUST00000049089.7|Twist1|ENSMUSG00000035799.7|twist basic helix-loop-helix transcription factor 1
mm39_v1_chr11_+_59197746_59197761	0.01241005721721766	CAGUAGU	ENSMUST00000000128.10|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A	ENSMUST00000108783.4|Wnt9a|ENSMUSG00000000126.12|wingless-type MMTV integration site family, member 9A
mm39_v1_chr8_-_40964704_40964797	0.012395178421919905	CAGUAGU	ENSMUST00000135269.8|Cnot7|ENSMUSG00000031601.17|CCR4-NOT transcription complex, subunit 7	ENSMUST00000034012.10|Cnot7|ENSMUSG00000031601.17|CCR4-NOT transcription complex, subunit 7
mm39_v1_chr16_+_13981180_13981216	0.012124560474912558	CAGUAGU	ENSMUST00000115795.9|Nde1|ENSMUSG00000022678.17|nudE neurodevelopment protein 1
mm39_v1_chr4_-_25800083_25800146	0.011934625334365382	CAGUAGU	ENSMUST00000084770.5|Fut9|ENSMUSG00000055373.9|fucosyltransferase 9
mm39_v1_chr16_-_50252703_50252772	0.011416671712099856	CAGUAGU	ENSMUST00000066037.13|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089399.11|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000089404.10|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing	ENSMUST00000138166.8|Bbx|ENSMUSG00000022641.16|bobby sox HMG box containing
mm39_v1_chr3_-_41037427_41037481	0.01077506038412656	CAGUAGU	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chr8_-_80784619_80784646	0.00964155566151715	CAGUAGU	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr3_+_151916059_151916102	0.009150129566261076	CAGUAGU	ENSMUST00000166984.8|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr7_+_86895851_86895877	0.0087578806344377	CAGUAGU	ENSMUST00000032781.14|Nox4|ENSMUSG00000030562.18|NADPH oxidase 4
mm39_v1_chrX_+_104807868_104807885	0.008587070117671673	CAGUAGU	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr18_-_52662917_52662989	0.008268422614661687	CAGUAGU	ENSMUST00000171470.8|Lox|ENSMUSG00000024529.15|lysyl oxidase
mm39_v1_chr13_-_101904662_101904725	0.008261671883838027	CAGUAGU	ENSMUST00000055518.13|Pik3r1|ENSMUSG00000041417.16|phosphoinositide-3-kinase regulatory subunit 1
mm39_v1_chr11_+_97554192_97554240	0.008218961245007353	CAGUAGU	ENSMUST00000044730.12|Mllt6|ENSMUSG00000038437.12|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6
mm39_v1_chr5_-_148336711_148336722	0.008085651786415727	CAGUAGU	ENSMUST00000048116.15|Slc7a1|ENSMUSG00000041313.15|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
mm39_v1_chr7_+_111622675_111622775	0.007693685512102726	CAGUAGU	ENSMUST00000106653.4|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47	ENSMUST00000215510.2|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47	ENSMUST00000210309.2|Usp47|ENSMUSG00000059263.10|ubiquitin specific peptidase 47
mm39_v1_chr15_-_66841465_66841496	0.007333488381531009	CAGUAGU	ENSMUST00000170903.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000166420.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000005256.14|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000164070.2|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1
mm39_v1_chr3_+_122213420_122213436	0.007096403916386732	CAGUAGU	ENSMUST00000029766.9|Bcar3|ENSMUSG00000028121.9|breast cancer anti-estrogen resistance 3
mm39_v1_chr10_+_87695117_87695128	0.006998800799428469	CAGUAGU	ENSMUST00000105300.9|Igf1|ENSMUSG00000020053.19|insulin-like growth factor 1
mm39_v1_chr8_+_106587212_106587240	0.006660680536649866	CAGUAGU	ENSMUST00000008594.9|Nutf2|ENSMUSG00000008450.9|nuclear transport factor 2
mm39_v1_chrX_+_52001108_52001238	0.006628976272414821	CAGUAGU	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chr6_-_114898739_114898798	0.0060866068372261595	CAGUAGU	ENSMUST00000032459.14|Vgll4|ENSMUSG00000030315.16|vestigial like family member 4
mm39_v1_chr3_-_116217579_116217681	0.0055486882616816455	CAGUAGU	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr2_+_4722956_4723017	0.004889595594681704	CAGUAGU	ENSMUST00000056914.7|Bend7|ENSMUSG00000048186.15|BEN domain containing 7
mm39_v1_chr18_+_59308722_59308722	0.004385395623268364	CAGUAGU	ENSMUST00000080721.6|Chsy3|ENSMUSG00000058152.9|chondroitin sulfate synthase 3
mm39_v1_chr10_-_70435114_70435132	0.004351631775125303	CAGUAGU	ENSMUST00000046513.10|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like
mm39_v1_chr19_+_58931847_58931873	0.004174452450416468	CAGUAGU	ENSMUST00000054280.10|Eno4|ENSMUSG00000048029.11|enolase 4	ENSMUST00000200910.4|Eno4|ENSMUSG00000048029.11|enolase 4
mm39_v1_chr4_+_17853452_17853474	0.004152018079116236	CAGUAGU	ENSMUST00000029881.10|Mmp16|ENSMUSG00000028226.16|matrix metallopeptidase 16
mm39_v1_chr1_+_136552639_136552688	0.004073118824621692	CAGUAGU	ENSMUST00000047734.15|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281	ENSMUST00000112046.2|Zfp281|ENSMUSG00000041483.15|zinc finger protein 281
mm39_v1_chr17_+_28361115_28361167	0.003836770186066954	CAGUAGU	ENSMUST00000043503.11|Scube3|ENSMUSG00000038677.15|signal peptide, CUB domain, EGF-like 3
mm39_v1_chr9_+_51676625_51676665	0.0037869179873159953	CAGUAGU	ENSMUST00000065496.12|Arhgap20|ENSMUSG00000053199.14|Rho GTPase activating protein 20
mm39_v1_chr13_+_43551851_43551878	0.0031547618043743994	CAGUAGU	ENSMUST00000071926.5|Nol7|ENSMUSG00000063200.5|nucleolar protein 7	ENSMUST00000222499.2|Nol7|ENSMUSG00000063200.5|nucleolar protein 7
mm39_v1_chr2_+_112285342_112285408	0.0019205861789771555	CAGUAGU	ENSMUST00000069747.6|Emc7|ENSMUSG00000055943.6|ER membrane protein complex subunit 7
mm39_v1_chr6_+_8948608_8948619	0.001788414856642645	CAGUAGU	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
mm39_v1_chr8_+_55407872_55407889	0.001671239974338557	CAGUAGU	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr11_+_83741657_83741681	0.0013931263005533899	CAGUAGU	ENSMUST00000021016.10|Hnf1b|ENSMUSG00000020679.12|HNF1 homeobox B
mm39_v1_chr1_-_169575203_169575218	0.0013723395082910358	CAGUAGU	ENSMUST00000027991.12|Rgs4|ENSMUSG00000038530.12|regulator of G-protein signaling 4	ENSMUST00000111357.2|Rgs4|ENSMUSG00000038530.12|regulator of G-protein signaling 4
mm39_v1_chr3_+_9315662_9315662	0.0012619957228920749	CAGUAGU	ENSMUST00000155203.2|Zbtb10|ENSMUSG00000069114.9|zinc finger and BTB domain containing 10
mm39_v1_chr6_-_30304512_30304569	0.0012413989122041212	CAGUAGU	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr15_+_34837501_34837501	0.0010042792510025478	CAGUAGU	ENSMUST00000072868.5|Kcns2|ENSMUSG00000050963.8|K+ voltage-gated channel, subfamily S, 2
mm39_v1_chr11_+_32592707_32592875	0.0008772661296253281	CAGUAGU	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr6_-_72876882_72876980	0.000862403556682002	CAGUAGU	ENSMUST00000068697.11|Kcmf1|ENSMUSG00000055239.11|potassium channel modulatory factor 1
mm39_v1_chr2_-_71377088_71377103	0.0007635358504938398	CAGUAGU	ENSMUST00000024159.8|Dlx2|ENSMUSG00000023391.9|distal-less homeobox 2
