mm39_v1_chr6_-_113172340_113172349	0.07199119392369634	CCAGCAU	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr1_-_162567919_162568103	0.05238496323275556	CCAGCAU	ENSMUST00000182331.2|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000183011.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182593.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C	ENSMUST00000182149.8|Prrc2c|ENSMUSG00000040225.16|proline-rich coiled-coil 2C
mm39_v1_chr11_+_68979332_68979380	0.048777772219965404	CCAGCAU	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr7_+_134272395_134272445	0.044428586869716916	CCAGCAU	ENSMUST00000211593.2|Dock1|ENSMUSG00000058325.7|dedicator of cytokinesis 1	ENSMUST00000084488.5|Dock1|ENSMUSG00000058325.7|dedicator of cytokinesis 1
mm39_v1_chr4_-_56990306_56990394	0.03435161581149429	CCAGCAU	ENSMUST00000053681.6|Frrs1l|ENSMUSG00000045589.8|ferric-chelate reductase 1 like
mm39_v1_chr10_+_53213763_53213820	0.03417317542161123	CCAGCAU	ENSMUST00000219491.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000163319.9|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000220197.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000046221.8|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000218468.2|Pln|ENSMUSG00000038583.14|phospholamban	ENSMUST00000219921.2|Pln|ENSMUSG00000038583.14|phospholamban
mm39_v1_chr2_-_162502994_162503067	0.03354961699235131	CCAGCAU	ENSMUST00000109442.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109445.9|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109443.8|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T	ENSMUST00000109441.2|Ptprt|ENSMUSG00000053141.17|protein tyrosine phosphatase, receptor type, T
mm39_v1_chr10_-_62067026_62067033	0.0331394863652654	CCAGCAU	ENSMUST00000047883.11|Tspan15|ENSMUSG00000037031.11|tetraspanin 15
mm39_v1_chr18_+_61058684_61058712	0.03184684606654395	CCAGCAU	ENSMUST00000102888.10|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha	ENSMUST00000025519.11|Camk2a|ENSMUSG00000024617.17|calcium/calmodulin-dependent protein kinase II alpha
mm39_v1_chr5_-_121147593_121147639	0.024695173966030687	CCAGCAU	ENSMUST00000079204.9|Rph3a|ENSMUSG00000029608.11|rabphilin 3A
mm39_v1_chr8_-_116434517_116434533	0.023010902569006616	CCAGCAU	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr19_-_47452840_47452894	0.02280132455833017	CCAGCAU	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr6_+_86826470_86826577	0.0227341501740993	CCAGCAU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr10_+_80330669_80330714	0.022253644711073512	CCAGCAU	ENSMUST00000051773.9|Onecut3|ENSMUSG00000045518.9|one cut domain, family member 3
mm39_v1_chr14_-_78774201_78774292	0.022211389806313712	CCAGCAU	ENSMUST00000123853.9|Akap11|ENSMUSG00000022016.18|A kinase (PRKA) anchor protein 11
mm39_v1_chr6_-_120015608_120015660	0.02205503587709866	CCAGCAU	ENSMUST00000177761.8|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000088644.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1	ENSMUST00000060043.13|Wnk1|ENSMUSG00000045962.17|WNK lysine deficient protein kinase 1
mm39_v1_chr13_-_105191403_105191438	0.02123115391487154	CCAGCAU	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr6_-_112924205_112924239	0.021167122845878607	CCAGCAU	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr15_+_80595486_80595541	0.019554917577623725	CCAGCAU	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr3_-_115800989_115801060	0.019417915278483005	CCAGCAU	ENSMUST00000067485.4|Slc30a7|ENSMUSG00000054414.5|solute carrier family 30 (zinc transporter), member 7
mm39_v1_chr11_+_94827050_94827087	0.0193932622878189	CCAGCAU	ENSMUST00000001547.8|Col1a1|ENSMUSG00000001506.11|collagen, type I, alpha 1
mm39_v1_chr18_-_16942289_16942384	0.019328003830338374	CCAGCAU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr7_+_121666388_121666438	0.019181183884794083	CCAGCAU	ENSMUST00000033158.6|Ubfd1|ENSMUSG00000030870.13|ubiquitin family domain containing 1
mm39_v1_chr13_+_89687915_89687915	0.017555593838934	CCAGCAU	ENSMUST00000022108.9|Hapln1|ENSMUSG00000021613.10|hyaluronan and proteoglycan link protein 1
mm39_v1_chr2_+_121120070_121120087	0.016959369967229614	CCAGCAU	ENSMUST00000094639.10|Map1a|ENSMUSG00000027254.14|microtubule-associated protein 1 A
mm39_v1_chrX_-_7440480_7440555	0.016883129662737095	CCAGCAU	ENSMUST00000115742.9|Ppp1r3f|ENSMUSG00000039556.17|protein phosphatase 1, regulatory subunit 3F	ENSMUST00000150787.8|Ppp1r3f|ENSMUSG00000039556.17|protein phosphatase 1, regulatory subunit 3F
mm39_v1_chr19_+_16110176_16110285	0.016748431965112418	CCAGCAU	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr3_-_89294430_89294496	0.01652847905030927	CCAGCAU	ENSMUST00000107433.8|Zbtb7b|ENSMUSG00000028042.16|zinc finger and BTB domain containing 7B
mm39_v1_chr12_-_56581823_56581891	0.013308273064719293	CCAGCAU	ENSMUST00000178477.9|Nkx2-1|ENSMUSG00000001496.16|NK2 homeobox 1
mm39_v1_chr16_+_34842764_34842811	0.012196036311908033	CCAGCAU	ENSMUST00000061156.10|Hacd2|ENSMUSG00000035376.11|3-hydroxyacyl-CoA dehydratase 2
mm39_v1_chr7_-_119494918_119494975	0.010940508558694688	CCAGCAU	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chrX_+_100576340_100576383	0.010004402859937735	CCAGCAU	ENSMUST00000118878.8|Taf1|ENSMUSG00000031314.19|TATA-box binding protein associated factor 1	ENSMUST00000101341.9|Taf1|ENSMUSG00000031314.19|TATA-box binding protein associated factor 1	ENSMUST00000149274.9|Taf1|ENSMUSG00000031314.19|TATA-box binding protein associated factor 1
mm39_v1_chr11_-_44361289_44361340	0.009904223520859384	CCAGCAU	ENSMUST00000102795.4|Ublcp1|ENSMUSG00000041231.16|ubiquitin-like domain containing CTD phosphatase 1
mm39_v1_chr4_+_132366298_132366430	0.008364454140874814	CCAGCAU	ENSMUST00000135299.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000020197.14|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000180250.8|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000081726.13|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3	ENSMUST00000079157.11|Eya3|ENSMUSG00000028886.16|EYA transcriptional coactivator and phosphatase 3
mm39_v1_chr12_-_24147247_24147247	0.008036310695657587	CCAGCAU	ENSMUST00000101538.5|9030624G23Rik|ENSMUSG00000073158.5|RIKEN cDNA 9030624G23 gene
mm39_v1_chr12_-_46865709_46865720	0.007981588746905684	CCAGCAU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr11_+_96820091_96820175	0.0076115902021466056	CCAGCAU	ENSMUST00000054311.6|Prr15l|ENSMUSG00000047040.10|proline rich 15-like	ENSMUST00000107636.4|Prr15l|ENSMUSG00000047040.10|proline rich 15-like
mm39_v1_chrX_+_72800675_72800711	0.0065765823996168735	CCAGCAU	ENSMUST00000002079.7|Plxnb3|ENSMUSG00000031385.15|plexin B3
mm39_v1_chr11_-_118246332_118246332	0.006480879460977453	CCAGCAU	ENSMUST00000017610.10|Timp2|ENSMUSG00000017466.10|tissue inhibitor of metalloproteinase 2
mm39_v1_chr5_-_137784912_137784930	0.006431655094968772	CCAGCAU	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr9_+_32607301_32607417	0.006211908243081184	CCAGCAU	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr13_-_107158535_107158652	0.006067036204358083	CCAGCAU	ENSMUST00000117539.8|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A	ENSMUST00000122233.8|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A	ENSMUST00000022204.16|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A	ENSMUST00000159772.8|Kif2a|ENSMUSG00000021693.21|kinesin family member 2A
mm39_v1_chr3_+_152101618_152101697	0.005943114161637777	CCAGCAU	ENSMUST00000106100.9|Zzz3|ENSMUSG00000039068.17|zinc finger, ZZ domain containing 3
mm39_v1_chr2_-_121101822_121101888	0.0056940484401796125	CCAGCAU	ENSMUST00000110647.8|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1	ENSMUST00000110648.8|Trp53bp1|ENSMUSG00000043909.17|transformation related protein 53 binding protein 1
mm39_v1_chr2_-_52314837_52314928	0.0056117484974897444	CCAGCAU	ENSMUST00000036541.8|Arl5a|ENSMUSG00000036093.8|ADP-ribosylation factor-like 5A
mm39_v1_chr11_-_95966477_95966516	0.00490794325603331	CCAGCAU	ENSMUST00000090541.12|Atp5g1|ENSMUSG00000006057.16|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
mm39_v1_chr4_-_140393185_140393323	0.004587643165067631	CCAGCAU	ENSMUST00000069623.12|Arhgef10l|ENSMUSG00000040964.17|Rho guanine nucleotide exchange factor (GEF) 10-like
mm39_v1_chr17_+_30224003_30224074	0.00447539486160328	CCAGCAU	ENSMUST00000057897.10|Zfand3|ENSMUSG00000044477.13|zinc finger, AN1-type domain 3
mm39_v1_chr7_-_132616977_132617058	0.004223564952552049	CCAGCAU	ENSMUST00000169570.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr18_+_32296126_32296249	0.0040703647025099885	CCAGCAU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr2_+_59442378_59442453	0.004016004462451298	CCAGCAU	ENSMUST00000112568.8|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	ENSMUST00000037526.11|Tanc1|ENSMUSG00000035168.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
mm39_v1_chr5_-_135963408_135963467	0.003576185031185299	CCAGCAU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chrX_+_95139639_95139662	0.0026270371387456335	CCAGCAU	ENSMUST00000117399.2|Msn|ENSMUSG00000031207.17|moesin
mm39_v1_chr1_-_75168567_75168641	0.0017463742277068982	CCAGCAU	ENSMUST00000040689.15|Atg9a|ENSMUSG00000033124.17|autophagy related 9A	ENSMUST00000189702.7|Atg9a|ENSMUSG00000033124.17|autophagy related 9A
mm39_v1_chr11_+_105480796_105480857	0.0014264338243478363	CCAGCAU	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr5_+_118307754_118307813	0.0008055172764679029	CCAGCAU	ENSMUST00000054836.7|Hrk|ENSMUSG00000046607.7|harakiri, BCL2 interacting protein (contains only BH3 domain)
mm39_v1_chr1_+_120530134_120530147	0.0006988032304399285	CCAGCAU	ENSMUST00000079721.9|En1|ENSMUSG00000058665.9|engrailed 1
mm39_v1_chr15_+_66449385_66449487	0.0006246546051290434	CCAGCAU	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr12_-_101785307_101785321	0.0006077220925646784	CCAGCAU	ENSMUST00000021603.9|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chr19_-_58849407_58849428	0.0005351333282441604	CCAGCAU	ENSMUST00000066285.6|Hspa12a|ENSMUSG00000025092.8|heat shock protein 12A
