mm39_v1_chr4_+_129030710_129030792	0.03691159688925178	CCUUGGC	ENSMUST00000102600.4|Fndc5|ENSMUSG00000001334.10|fibronectin type III domain containing 5
mm39_v1_chr9_-_43017249_43017322	0.03501520231530854	CCUUGGC	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr16_+_16714333_16714462	0.0324489617044498	CCUUGGC	ENSMUST00000027373.12|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)	ENSMUST00000232247.2|Ppm1f|ENSMUSG00000026181.14|protein phosphatase 1F (PP2C domain containing)
mm39_v1_chr1_-_72914036_72914050	0.02934613883995759	CCUUGGC	ENSMUST00000027377.9|Igfbp5|ENSMUSG00000026185.9|insulin-like growth factor binding protein 5
mm39_v1_chr11_+_3280401_3280541	0.024162137012317363	CCUUGGC	ENSMUST00000045153.11|Pik3ip1|ENSMUSG00000034614.15|phosphoinositide-3-kinase interacting protein 1
mm39_v1_chr11_+_106167541_106167574	0.02252255868168752	CCUUGGC	ENSMUST00000044462.4|Tcam1|ENSMUSG00000020712.12|testicular cell adhesion molecule 1
mm39_v1_chr17_+_87270504_87270537	0.02171937975646384	CCUUGGC	ENSMUST00000024956.15|Rhoq|ENSMUSG00000024143.16|ras homolog family member Q
mm39_v1_chr2_-_105229653_105229664	0.018828616446949213	CCUUGGC	ENSMUST00000006128.7|Rcn1|ENSMUSG00000005973.7|reticulocalbin 1
mm39_v1_chr18_+_68066328_68066378	0.01665538573916807	CCUUGGC	ENSMUST00000063775.5|Ldlrad4|ENSMUSG00000024544.10|low density lipoprotein receptor class A domain containing 4
mm39_v1_chr7_-_136916123_136916174	0.016216015738595737	CCUUGGC	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr2_-_156921135_156921196	0.016121438816379903	CCUUGGC	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
mm39_v1_chr11_+_98686321_98686421	0.015523224881516157	CCUUGGC	ENSMUST00000037915.9|Msl1|ENSMUSG00000052915.15|male specific lethal 1
mm39_v1_chr13_+_54519161_54519173	0.014507920825654552	CCUUGGC	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr2_-_152256947_152256947	0.014416781199053234	CCUUGGC	ENSMUST00000099207.5|Zcchc3|ENSMUSG00000074682.5|zinc finger, CCHC domain containing 3
mm39_v1_chr18_+_36797113_36797177	0.014337452223114994	CCUUGGC	ENSMUST00000036765.8|Eif4ebp3|ENSMUSG00000090264.2|eukaryotic translation initiation factor 4E binding protein 3
mm39_v1_chr10_+_79722081_79722153	0.014159604889981695	CCUUGGC	ENSMUST00000046091.7|Elane|ENSMUSG00000020125.8|elastase, neutrophil expressed
mm39_v1_chr4_+_49521176_49521297	0.013496492366675782	CCUUGGC	ENSMUST00000042964.13|Zfp189|ENSMUSG00000039634.13|zinc finger protein 189	ENSMUST00000107696.2|Zfp189|ENSMUSG00000039634.13|zinc finger protein 189
mm39_v1_chr7_-_78228116_78228157	0.013279046491781573	CCUUGGC	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr9_-_20888054_20888077	0.013104720860320046	CCUUGGC	ENSMUST00000054197.7|S1pr2|ENSMUSG00000043895.7|sphingosine-1-phosphate receptor 2
mm39_v1_chr17_-_28039588_28039662	0.0125743238174879	CCUUGGC	ENSMUST00000114863.10|Ilrun|ENSMUSG00000056692.14|inflammation and lipid regulator with UBA-like and NBR1-like domains	ENSMUST00000233131.2|Ilrun|ENSMUSG00000056692.14|inflammation and lipid regulator with UBA-like and NBR1-like domains
mm39_v1_chr19_+_44551280_44551318	0.0125466205347911	CCUUGGC	ENSMUST00000040455.5|Hif1an|ENSMUSG00000036450.5|hypoxia-inducible factor 1, alpha subunit inhibitor
mm39_v1_chr19_+_42158995_42159096	0.012490117756224986	CCUUGGC	ENSMUST00000169536.8|Zfyve27|ENSMUSG00000018820.14|zinc finger, FYVE domain containing 27	ENSMUST00000099443.11|Zfyve27|ENSMUSG00000018820.14|zinc finger, FYVE domain containing 27
mm39_v1_chr2_+_127112127_127112191	0.012364507626628133	CCUUGGC	ENSMUST00000110375.9|Stard7|ENSMUSG00000027367.17|START domain containing 7
mm39_v1_chr4_+_97665843_97665870	0.011921694858796388	CCUUGGC	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr15_-_103148239_103148297	0.011476935790571808	CCUUGGC	ENSMUST00000118152.8|Cbx5|ENSMUSG00000009575.15|chromobox 5
mm39_v1_chr3_-_95125002_95125038	0.011395434927955599	CCUUGGC	ENSMUST00000107209.8|Gabpb2|ENSMUSG00000038766.17|GA repeat binding protein, beta 2
mm39_v1_chr10_+_74802996_74803035	0.011168277586688924	CCUUGGC	ENSMUST00000037813.5|Gnaz|ENSMUSG00000040009.7|guanine nucleotide binding protein, alpha z subunit
mm39_v1_chr5_-_67585137_67585157	0.010543985536654159	CCUUGGC	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr15_-_25413838_25413863	0.010040463596066085	CCUUGGC	ENSMUST00000058845.9|Basp1|ENSMUSG00000045763.9|brain abundant, membrane attached signal protein 1
mm39_v1_chr5_-_36853281_36853386	0.00972596381753412	CCUUGGC	ENSMUST00000031091.13|D5Ertd579e|ENSMUSG00000029190.20|DNA segment, Chr 5, ERATO Doi 579, expressed	ENSMUST00000140653.2|D5Ertd579e|ENSMUSG00000029190.20|DNA segment, Chr 5, ERATO Doi 579, expressed
mm39_v1_chr16_+_18317613_18317694	0.009044899639514442	CCUUGGC	ENSMUST00000149035.8|Gnb1l|ENSMUSG00000000884.18|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	ENSMUST00000167778.9|Gnb1l|ENSMUSG00000000884.18|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	ENSMUST00000090086.11|Gnb1l|ENSMUSG00000000884.18|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	ENSMUST00000115601.8|Gnb1l|ENSMUSG00000000884.18|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	ENSMUST00000147739.8|Gnb1l|ENSMUSG00000000884.18|guanine nucleotide binding protein (G protein), beta polypeptide 1-like	ENSMUST00000146673.2|Rtl10|ENSMUSG00000086965.2|retrotransposon Gag like 10
mm39_v1_chr2_+_28403255_28403338	0.00898009217185802	CCUUGGC	ENSMUST00000028170.15|Ralgds|ENSMUSG00000026821.17|ral guanine nucleotide dissociation stimulator
mm39_v1_chr9_-_96993169_96993214	0.00893505013783639	CCUUGGC	ENSMUST00000085206.11|Slc25a36|ENSMUSG00000032449.14|solute carrier family 25, member 36
mm39_v1_chr4_+_32615428_32615508	0.008735714990727702	CCUUGGC	ENSMUST00000178925.8|Casp8ap2|ENSMUSG00000028282.13|caspase 8 associated protein 2	ENSMUST00000029950.10|Casp8ap2|ENSMUSG00000028282.13|caspase 8 associated protein 2
mm39_v1_chr9_-_57460004_57460054	0.00806750638403699	CCUUGGC	ENSMUST00000034856.15|Mpi|ENSMUSG00000032306.15|mannose phosphate isomerase
mm39_v1_chr15_+_102885467_102885467	0.00805081671690015	CCUUGGC	ENSMUST00000001706.7|Hoxc9|ENSMUSG00000036139.7|homeobox C9
mm39_v1_chr1_-_143652711_143652806	0.007720591049867779	CCUUGGC	ENSMUST00000159879.2|Ro60|ENSMUSG00000018199.10|Ro60, Y RNA binding protein
mm39_v1_chr3_-_65300000_65300044	0.007625603540030426	CCUUGGC	ENSMUST00000029414.12|Ssr3|ENSMUSG00000027828.13|signal sequence receptor, gamma
mm39_v1_chr17_+_34148485_34148560	0.007487605355102922	CCUUGGC	ENSMUST00000047503.16|Rgl2|ENSMUSG00000041354.17|ral guanine nucleotide dissociation stimulator-like 2
mm39_v1_chr11_+_73051228_73051411	0.007419035687637471	CCUUGGC	ENSMUST00000006104.10|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5	ENSMUST00000135202.8|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5	ENSMUST00000136894.3|P2rx5|ENSMUSG00000005950.15|purinergic receptor P2X, ligand-gated ion channel, 5
mm39_v1_chr1_-_135032972_135033014	0.007412941793480398	CCUUGGC	ENSMUST00000044828.14|Lgr6|ENSMUSG00000042793.14|leucine-rich repeat-containing G protein-coupled receptor 6
mm39_v1_chr12_+_76417040_76417040	0.007374760450369288	CCUUGGC	ENSMUST00000042779.4|Zbtb1|ENSMUSG00000033454.7|zinc finger and BTB domain containing 1
mm39_v1_chr2_-_34645241_34645268	0.007187865401548489	CCUUGGC	ENSMUST00000102800.9|Gapvd1|ENSMUSG00000026867.20|GTPase activating protein and VPS9 domains 1
mm39_v1_chr8_+_36054919_36054981	0.006999536767211731	CCUUGGC	ENSMUST00000037666.6|Mfhas1|ENSMUSG00000070056.7|malignant fibrous histiocytoma amplified sequence 1
mm39_v1_chr8_+_111760521_111760565	0.0068908586144057074	CCUUGGC	ENSMUST00000034441.8|Aars|ENSMUSG00000031960.15|alanyl-tRNA synthetase
mm39_v1_chr5_+_34706936_34707032	0.00654371021137331	CCUUGGC	ENSMUST00000179943.3|Sh3bp2|ENSMUSG00000054520.16|SH3-domain binding protein 2
mm39_v1_chr11_-_5492175_5492221	0.006396836608077033	CCUUGGC	ENSMUST00000020776.5|Ccdc117|ENSMUSG00000020482.5|coiled-coil domain containing 117
mm39_v1_chr11_+_32592707_32592875	0.0063078811257605664	CCUUGGC	ENSMUST00000109366.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000093205.13|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11	ENSMUST00000076383.8|Fbxw11|ENSMUSG00000020271.18|F-box and WD-40 domain protein 11
mm39_v1_chr18_+_73706115_73706115	0.006291453881284479	CCUUGGC	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr2_+_121859025_121859137	0.006234777842238955	CCUUGGC	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr18_-_35064906_35065066	0.006129469018076752	CCUUGGC	ENSMUST00000025218.8|Etf1|ENSMUSG00000024360.9|eukaryotic translation termination factor 1
mm39_v1_chr12_+_111132779_111132832	0.006077189883659526	CCUUGGC	ENSMUST00000117269.8|Traf3|ENSMUSG00000021277.17|TNF receptor-associated factor 3
mm39_v1_chr4_-_134580604_134580656	0.005945360708477254	CCUUGGC	ENSMUST00000030628.15|Maco1|ENSMUSG00000028826.15|macoilin 1
mm39_v1_chr14_+_55120875_55120972	0.005546492111368506	CCUUGGC	ENSMUST00000134077.2|Gm20521|ENSMUSG00000092232.2|predicted gene 20521	ENSMUST00000172844.8|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000133397.4|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2	ENSMUST00000227108.2|Bcl2l2|ENSMUSG00000089682.11|BCL2-like 2
mm39_v1_chr17_-_31877703_31877866	0.005433533882852201	CCUUGGC	ENSMUST00000236475.2|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000166526.9|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000014684.6|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
mm39_v1_chr11_-_115426618_115426718	0.005427768004621952	CCUUGGC	ENSMUST00000121185.8|Sumo2|ENSMUSG00000020738.17|small ubiquitin-like modifier 2	ENSMUST00000117589.8|Sumo2|ENSMUSG00000020738.17|small ubiquitin-like modifier 2
mm39_v1_chr1_-_58625431_58625482	0.005385430297890599	CCUUGGC	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr2_+_30254239_30254316	0.005343387339777124	CCUUGGC	ENSMUST00000077977.14|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000140075.9|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000142801.8|Miga2|ENSMUSG00000026858.19|mitoguardin 2	ENSMUST00000100214.10|Miga2|ENSMUSG00000026858.19|mitoguardin 2
mm39_v1_chr16_+_21828223_21828275	0.005337809473582095	CCUUGGC	ENSMUST00000023561.8|Senp2|ENSMUSG00000022855.10|SUMO/sentrin specific peptidase 2
mm39_v1_chr5_-_149559667_149559678	0.005271638203482288	CCUUGGC	ENSMUST00000074846.14|Hsph1|ENSMUSG00000029657.16|heat shock 105kDa/110kDa protein 1
mm39_v1_chr5_-_123038329_123038438	0.0052494096620423	CCUUGGC	ENSMUST00000031435.14|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr6_-_71417607_71417630	0.005128450086732356	CCUUGGC	ENSMUST00000002292.15|Rmnd5a|ENSMUSG00000002222.15|required for meiotic nuclear division 5 homolog A
mm39_v1_chr5_+_130173702_130173777	0.00502029580662827	CCUUGGC	ENSMUST00000040616.9|Kctd7|ENSMUSG00000034110.9|potassium channel tetramerisation domain containing 7
mm39_v1_chr13_+_49495025_49495099	0.004904394772872609	CCUUGGC	ENSMUST00000048544.14|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110084.4|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2	ENSMUST00000110085.11|Bicd2|ENSMUSG00000037933.17|BICD cargo adaptor 2
mm39_v1_chr1_-_155688635_155688651	0.004860205819426651	CCUUGGC	ENSMUST00000035325.15|Qsox1|ENSMUSG00000033684.15|quiescin Q6 sulfhydryl oxidase 1
mm39_v1_chr17_+_64203017_64203059	0.004840991124209467	CCUUGGC	ENSMUST00000000129.14|Fer|ENSMUSG00000000127.16|fer (fms/fps related) protein kinase
mm39_v1_chr6_-_72416531_72416548	0.004666542860099332	CCUUGGC	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr9_-_106315518_106315591	0.004633285158028624	CCUUGGC	ENSMUST00000024031.13|Acy1|ENSMUSG00000023262.14|aminoacylase 1	ENSMUST00000190972.3|Acy1|ENSMUSG00000023262.14|aminoacylase 1
mm39_v1_chr17_+_45997248_45997330	0.004632814426954546	CCUUGGC	ENSMUST00000024734.8|Mrpl14|ENSMUSG00000023939.8|mitochondrial ribosomal protein L14
mm39_v1_chr7_+_119773070_119773117	0.004434330938125485	CCUUGGC	ENSMUST00000033201.7|Anks4b|ENSMUSG00000030909.7|ankyrin repeat and sterile alpha motif domain containing 4B
mm39_v1_chr3_-_9898713_9898739	0.004232948848899272	CCUUGGC	ENSMUST00000161949.8|Pag1|ENSMUSG00000027508.16|phosphoprotein associated with glycosphingolipid microdomains 1
mm39_v1_chr6_-_124715560_124715588	0.004212571892369449	CCUUGGC	ENSMUST00000004377.15|Ptpn6|ENSMUSG00000004266.16|protein tyrosine phosphatase, non-receptor type 6
mm39_v1_chr1_+_65225834_65225881	0.0041970898435139065	CCUUGGC	ENSMUST00000081154.14|Pikfyve|ENSMUSG00000025949.17|phosphoinositide kinase, FYVE type zinc finger containing
mm39_v1_chr12_-_51738666_51738738	0.004184827420586547	CCUUGGC	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr4_-_41314877_41314889	0.004082667586973044	CCUUGGC	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr12_-_8550003_8550017	0.00399051925547324	CCUUGGC	ENSMUST00000067384.6|Rhob|ENSMUSG00000054364.6|ras homolog family member B
mm39_v1_chrX_+_72716756_72716848	0.003964830276931837	CCUUGGC	ENSMUST00000033752.14|Slc6a8|ENSMUSG00000019558.15|solute carrier family 6 (neurotransmitter transporter, creatine), member 8	ENSMUST00000114467.9|Slc6a8|ENSMUSG00000019558.15|solute carrier family 6 (neurotransmitter transporter, creatine), member 8
mm39_v1_chr13_+_55357585_55357602	0.0036361130801282407	CCUUGGC	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr8_+_12445287_12445295	0.003562984967861285	CCUUGGC	ENSMUST00000180353.2|Sox1|ENSMUSG00000096014.2|SRY (sex determining region Y)-box 1
mm39_v1_chr2_+_119727689_119727786	0.00351351498404903	CCUUGGC	ENSMUST00000046717.13|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000079934.12|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000110774.8|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000110773.9|Mga|ENSMUSG00000033943.16|MAX gene associated	ENSMUST00000156510.2|Mga|ENSMUSG00000033943.16|MAX gene associated
mm39_v1_chr8_-_71964379_71964405	0.0032899248345411016	CCUUGGC	ENSMUST00000048452.6|Plvap|ENSMUSG00000034845.7|plasmalemma vesicle associated protein
mm39_v1_chrX_+_20714782_20714828	0.003102498241067131	CCUUGGC	ENSMUST00000001155.11|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase	ENSMUST00000122312.8|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase	ENSMUST00000120356.8|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase	ENSMUST00000122850.2|Araf|ENSMUSG00000001127.13|Araf proto-oncogene, serine/threonine kinase
mm39_v1_chr11_-_116545071_116545151	0.003006267250720623	CCUUGGC	ENSMUST00000021166.6|Cygb|ENSMUSG00000020810.6|cytoglobin
mm39_v1_chr1_-_75168567_75168641	0.002899974329044716	CCUUGGC	ENSMUST00000040689.15|Atg9a|ENSMUSG00000033124.17|autophagy related 9A	ENSMUST00000189702.7|Atg9a|ENSMUSG00000033124.17|autophagy related 9A
mm39_v1_chr6_-_114898739_114898798	0.0028835390230207017	CCUUGGC	ENSMUST00000032459.14|Vgll4|ENSMUSG00000030315.16|vestigial like family member 4
mm39_v1_chr5_-_124465946_124466035	0.002812738809323596	CCUUGGC	ENSMUST00000031344.13|Mphosph9|ENSMUSG00000038126.18|M-phase phosphoprotein 9
mm39_v1_chr11_+_121593219_121593237	0.0027294536958566693	CCUUGGC	ENSMUST00000036742.14|Metrnl|ENSMUSG00000039208.16|meteorin, glial cell differentiation regulator-like
mm39_v1_chr1_-_189902868_189902942	0.002540154928650543	CCUUGGC	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr2_-_93292734_93292757	0.002538167717727574	CCUUGGC	ENSMUST00000099696.8|Cd82|ENSMUSG00000027215.14|CD82 antigen
mm39_v1_chr16_-_3726503_3726554	0.0024980886791773527	CCUUGGC	ENSMUST00000115859.8|1700037C18Rik|ENSMUSG00000005983.16|RIKEN cDNA 1700037C18 gene
mm39_v1_chr8_+_95328558_95328631	0.0024638321041676294	CCUUGGC	ENSMUST00000060389.10|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000212729.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000121101.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1
mm39_v1_chr11_-_85741159_85741159	0.002375414213845217	CCUUGGC	ENSMUST00000146433.2|Gm11444|ENSMUSG00000069785.5|predicted gene 11444
mm39_v1_chr6_+_127049865_127049872	0.0023621880048064307	CCUUGGC	ENSMUST00000000186.9|Fgf23|ENSMUSG00000000182.10|fibroblast growth factor 23
mm39_v1_chr14_+_60615128_60615153	0.002304693243330641	CCUUGGC	ENSMUST00000022561.9|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr1_+_60448703_60448811	0.002303823973342416	CCUUGGC	ENSMUST00000052332.15|Abi2|ENSMUSG00000026782.16|abl interactor 2
mm39_v1_chr9_-_119766580_119766631	0.0022596675497611116	CCUUGGC	ENSMUST00000035099.9|Gorasp1|ENSMUSG00000032513.9|golgi reassembly stacking protein 1
mm39_v1_chr3_-_89294430_89294496	0.00225533102008432	CCUUGGC	ENSMUST00000107433.8|Zbtb7b|ENSMUSG00000028042.16|zinc finger and BTB domain containing 7B
mm39_v1_chr11_-_6015736_6015755	0.0022184310634183	CCUUGGC	ENSMUST00000002817.12|Camk2b|ENSMUSG00000057897.15|calcium/calmodulin-dependent protein kinase II, beta	ENSMUST00000109813.9|Camk2b|ENSMUSG00000057897.15|calcium/calmodulin-dependent protein kinase II, beta	ENSMUST00000090443.10|Camk2b|ENSMUSG00000057897.15|calcium/calmodulin-dependent protein kinase II, beta
mm39_v1_chr4_+_135870808_135870808	0.0020250839988233136	CCUUGGC	ENSMUST00000008016.3|Id3|ENSMUSG00000007872.4|inhibitor of DNA binding 3
mm39_v1_chr1_-_170695328_170695354	0.0020087374226489016	CCUUGGC	ENSMUST00000027974.7|Atf6|ENSMUSG00000026663.7|activating transcription factor 6
mm39_v1_chr2_+_102488985_102489014	0.0019383188398003077	CCUUGGC	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr11_-_69563133_69563186	0.001894866066571884	CCUUGGC	ENSMUST00000163666.3|Eif4a1|ENSMUSG00000059796.17|eukaryotic translation initiation factor 4A1
mm39_v1_chr6_-_100264439_100264461	0.0018314424931733984	CCUUGGC	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr10_-_127031578_127031610	0.0018020252232076714	CCUUGGC	ENSMUST00000038217.14|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase	ENSMUST00000130855.8|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase	ENSMUST00000116229.2|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase	ENSMUST00000144322.8|Dtx3|ENSMUSG00000040415.16|deltex 3, E3 ubiquitin ligase
mm39_v1_chr2_-_91540864_91540927	0.0017568516494542422	CCUUGGC	ENSMUST00000028678.9|Atg13|ENSMUSG00000027244.15|autophagy related 13	ENSMUST00000076803.12|Atg13|ENSMUSG00000027244.15|autophagy related 13
mm39_v1_chr7_+_79674562_79674589	0.0017011653925632238	CCUUGGC	ENSMUST00000164056.9|Zfp710|ENSMUSG00000048897.16|zinc finger protein 710	ENSMUST00000166250.8|Zfp710|ENSMUSG00000048897.16|zinc finger protein 710
mm39_v1_chrY_-_1286623_1286635	0.0016775823676984328	CCUUGGC	ENSMUST00000091190.12|Ddx3y|ENSMUSG00000069045.12|DEAD box helicase 3, Y-linked
mm39_v1_chr1_-_170755136_170755152	0.001647655157773402	CCUUGGC	ENSMUST00000046322.14|Fcrla|ENSMUSG00000038421.14|Fc receptor-like A	ENSMUST00000159171.2|Fcrla|ENSMUSG00000038421.14|Fc receptor-like A
mm39_v1_chrX_+_141464393_141464425	0.0016364487515111578	CCUUGGC	ENSMUST00000112889.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000101198.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000112891.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000087333.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164
mm39_v1_chr13_+_38010203_38010291	0.0015834570793534179	CCUUGGC	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr10_-_116417333_116417416	0.0015469792058297501	CCUUGGC	ENSMUST00000218744.2|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105267.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000105265.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000167706.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000168036.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000169921.8|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2	ENSMUST00000020374.6|Cnot2|ENSMUSG00000020166.16|CCR4-NOT transcription complex, subunit 2
mm39_v1_chr9_+_59485475_59485620	0.0015305072981566135	CCUUGGC	ENSMUST00000118549.8|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6	ENSMUST00000034840.10|Celf6|ENSMUSG00000032297.12|CUGBP, Elav-like family member 6
mm39_v1_chr9_-_36708569_36708589	0.0015291042974725805	CCUUGGC	ENSMUST00000163192.11|Ei24|ENSMUSG00000062762.18|etoposide induced 2.4 mRNA
mm39_v1_chr2_+_38821987_38822019	0.001503889476478465	CCUUGGC	ENSMUST00000057279.6|Olfml2a|ENSMUSG00000046618.8|olfactomedin-like 2A
mm39_v1_chr3_+_130904000_130904120	0.0013576099081943093	CCUUGGC	ENSMUST00000029611.14|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000106341.9|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1	ENSMUST00000066849.13|Lef1|ENSMUSG00000027985.15|lymphoid enhancer binding factor 1
mm39_v1_chr7_+_18659787_18659826	0.0012968192885599293	CCUUGGC	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr7_-_125799644_125799673	0.0012943997145788652	CCUUGGC	ENSMUST00000168189.8|Xpo6|ENSMUSG00000000131.16|exportin 6
mm39_v1_chr16_+_32698149_32698230	0.0012874856350114318	CCUUGGC	ENSMUST00000023489.11|Fyttd1|ENSMUSG00000022800.15|forty-two-three domain containing 1	ENSMUST00000171325.9|Fyttd1|ENSMUSG00000022800.15|forty-two-three domain containing 1
mm39_v1_chr6_-_71800788_71800799	0.0012690717764885903	CCUUGGC	ENSMUST00000065103.4|Mrpl35|ENSMUSG00000052962.4|mitochondrial ribosomal protein L35
mm39_v1_chr4_+_141148068_141148109	0.0012630467739564468	CCUUGGC	ENSMUST00000102486.5|Hspb7|ENSMUSG00000006221.8|heat shock protein family, member 7 (cardiovascular)
mm39_v1_chrX_-_72759748_72759784	0.001221864260848458	CCUUGGC	ENSMUST00000002091.6|Bcap31|ENSMUSG00000002015.6|B cell receptor associated protein 31
mm39_v1_chr2_-_156848923_156849074	0.0012074213046946744	CCUUGGC	ENSMUST00000146413.8|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component	ENSMUST00000103129.9|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component	ENSMUST00000103130.8|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component
mm39_v1_chr4_+_62883796_62883854	0.0011913167310892221	CCUUGGC	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr7_-_73191484_73191503	0.0011714540138852113	CCUUGGC	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr4_-_43483696_43483734	0.0011597493902142523	CCUUGGC	ENSMUST00000030180.7|Sit1|ENSMUSG00000028460.7|suppression inducing transmembrane adaptor 1
mm39_v1_chr1_+_4928260_4928265	0.0011307012393668207	CCUUGGC	ENSMUST00000165720.3|Tcea1|ENSMUSG00000033813.16|transcription elongation factor A (SII) 1
mm39_v1_chr4_+_99184137_99184137	0.0008633958014917281	CCUUGGC	ENSMUST00000094955.3|Gm12689|ENSMUSG00000070891.3|predicted gene 12689
mm39_v1_chr9_+_40180726_40180737	0.0008549991010990299	CCUUGGC	ENSMUST00000171835.9|Scn3b|ENSMUSG00000049281.17|sodium channel, voltage-gated, type III, beta
mm39_v1_chr10_+_13376745_13376787	0.0007598769816915744	CCUUGGC	ENSMUST00000060212.13|Fuca2|ENSMUSG00000019810.16|fucosidase, alpha-L- 2, plasma	ENSMUST00000121465.3|Fuca2|ENSMUSG00000019810.16|fucosidase, alpha-L- 2, plasma
mm39_v1_chr13_+_8252895_8252907	0.0007352715517838456	CCUUGGC	ENSMUST00000064473.13|Adarb2|ENSMUSG00000052551.17|adenosine deaminase, RNA-specific, B2
mm39_v1_chr10_+_126814542_126814618	0.0006002713015229681	CCUUGGC	ENSMUST00000105256.10|Ctdsp2|ENSMUSG00000078429.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm39_v1_chr7_-_70010341_70010494	0.0005447651581494703	CCUUGGC	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr11_+_68393845_68393902	0.0004935779769287736	CCUUGGC	ENSMUST00000102613.8|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5	ENSMUST00000060441.7|Pik3r6|ENSMUSG00000046207.15|phosphoinositide-3-kinase regulatory subunit 5
mm39_v1_chr11_-_95200382_95200428	0.00043504527511142985	CCUUGGC	ENSMUST00000092766.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7	ENSMUST00000072621.12|Kat7|ENSMUSG00000038909.17|K(lysine) acetyltransferase 7
mm39_v1_chr1_-_135186176_135186306	0.00034769257666963856	CCUUGGC	ENSMUST00000185752.2|Elf3|ENSMUSG00000003051.14|E74-like factor 3	ENSMUST00000003135.14|Elf3|ENSMUSG00000003051.14|E74-like factor 3
mm39_v1_chrX_+_6489313_6489349	0.00033256975179591524	CCUUGGC	ENSMUST00000089520.3|Shroom4|ENSMUSG00000068270.16|shroom family member 4
mm39_v1_chr2_+_30735071_30735071	0.00030781384890440656	CCUUGGC	ENSMUST00000041659.7|Prrx2|ENSMUSG00000039476.14|paired related homeobox 2
mm39_v1_chr5_-_138980690_138980792	0.0002931588783486051	CCUUGGC	ENSMUST00000046901.14|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha	ENSMUST00000076095.14|Pdgfa|ENSMUSG00000025856.16|platelet derived growth factor, alpha
mm39_v1_chr10_+_62816005_62816041	0.00022578963087977838	CCUUGGC	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr12_-_52053268_52053295	0.00016477740223348395	CCUUGGC	ENSMUST00000085404.10|Dtd2|ENSMUSG00000020956.15|D-tyrosyl-tRNA deacylase 2	ENSMUST00000021339.8|Dtd2|ENSMUSG00000020956.15|D-tyrosyl-tRNA deacylase 2
mm39_v1_chr15_+_102875229_102875248	0.0001485214492719629	CCUUGGC	ENSMUST00000001699.8|Hoxc10|ENSMUSG00000022484.8|homeobox C10
mm39_v1_chr6_-_113172340_113172349	0.00013991365898763435	CCUUGGC	ENSMUST00000162280.2|Lhfpl4|ENSMUSG00000042873.12|lipoma HMGIC fusion partner-like protein 4
mm39_v1_chr12_+_31315270_31315321	0.0001160654107543233	CCUUGGC	ENSMUST00000002979.16|Lamb1|ENSMUSG00000002900.18|laminin B1	ENSMUST00000239496.2|Lamb1|ENSMUSG00000002900.18|laminin B1	ENSMUST00000170495.3|Lamb1|ENSMUSG00000002900.18|laminin B1
mm39_v1_chr3_+_87754057_87754118	0.00011372895558851651	CCUUGGC	ENSMUST00000107581.9|Sh2d2a|ENSMUSG00000028071.13|SH2 domain containing 2A
mm39_v1_chr11_+_105480796_105480857	0.00011063657288756995	CCUUGGC	ENSMUST00000168598.8|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	ENSMUST00000100330.10|Tanc2|ENSMUSG00000053580.17|tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
mm39_v1_chr1_-_14826208_14826222	9.762426896462024e-05	CCUUGGC	ENSMUST00000027062.7|Msc|ENSMUSG00000025930.7|musculin
