mm39_v1_chr11_+_68986043_68986115	0.3282704573758373	Clock	ENSMUST00000101004.9|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr7_-_68398989_68398998	0.3259935781473815	Clock	ENSMUST00000048068.15|Arrdc4|ENSMUSG00000042659.16|arrestin domain containing 4
mm39_v1_chr13_-_12355604_12355641	0.23188121477475376	Clock	ENSMUST00000168193.8|Actn2|ENSMUSG00000052374.17|actinin alpha 2	ENSMUST00000064204.14|Actn2|ENSMUSG00000052374.17|actinin alpha 2
mm39_v1_chr4_-_57143437_57143626	0.20290051167483253	Clock	ENSMUST00000095076.10|Epb41l4b|ENSMUSG00000028434.13|erythrocyte membrane protein band 4.1 like 4b	ENSMUST00000030142.4|Epb41l4b|ENSMUSG00000028434.13|erythrocyte membrane protein band 4.1 like 4b
mm39_v1_chr10_+_22034460_22034491	0.19100309478329017	Clock	ENSMUST00000181645.8|Raet1e|ENSMUSG00000053219.16|retinoic acid early transcript 1E	ENSMUST00000105522.9|H60b|ENSMUSG00000075297.11|histocompatibility 60b
mm39_v1_chr12_+_24701273_24701410	0.17962902786446497	Clock	ENSMUST00000020982.7|Klf11|ENSMUSG00000020653.13|Kruppel-like factor 11
mm39_v1_chr8_-_46452896_46452911	0.17184528709021804	Clock	ENSMUST00000053558.10|Ankrd37|ENSMUSG00000050914.17|ankyrin repeat domain 37
mm39_v1_chr7_-_68398917_68398979	0.1580510384250463	Clock	ENSMUST00000118110.3|Arrdc4|ENSMUSG00000042659.16|arrestin domain containing 4
mm39_v1_chr4_+_107825529_107825621	0.11336184400172968	Clock	ENSMUST00000106713.5|Slc1a7|ENSMUSG00000008932.11|solute carrier family 1 (glutamate transporter), member 7	ENSMUST00000238795.2|Slc1a7|ENSMUSG00000008932.11|solute carrier family 1 (glutamate transporter), member 7
mm39_v1_chr4_-_133484080_133484106	0.10963044066742943	Clock	ENSMUST00000008024.7|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)
mm39_v1_chr8_+_108669276_108669276	0.1032128189090092	Clock	ENSMUST00000220518.2|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr15_-_102533870_102533936	0.09403413756723249	Clock	ENSMUST00000184485.8|Atf7|ENSMUSG00000099083.8|activating transcription factor 7	ENSMUST00000185070.8|Atf7|ENSMUSG00000099083.8|activating transcription factor 7	ENSMUST00000184616.8|Atf7|ENSMUSG00000099083.8|activating transcription factor 7	ENSMUST00000108828.9|Atf7|ENSMUSG00000099083.8|activating transcription factor 7
mm39_v1_chr17_+_47922497_47922544	0.09057152582899301	Clock	ENSMUST00000024778.3|Med20|ENSMUSG00000092558.4|mediator complex subunit 20
mm39_v1_chr2_-_130748259_130748326	0.08984697775686427	Clock	ENSMUST00000128176.2|A730017L22Rik|ENSMUSG00000085566.2|RIKEN cDNA A730017L22 gene	ENSMUST00000133766.2|A730017L22Rik|ENSMUSG00000085566.2|RIKEN cDNA A730017L22 gene	ENSMUST00000135110.2|A730017L22Rik|ENSMUSG00000085566.2|RIKEN cDNA A730017L22 gene	ENSMUST00000146975.2|4930402H24Rik|ENSMUSG00000027309.19|RIKEN cDNA 4930402H24 gene
mm39_v1_chr13_+_20369377_20369472	0.08976838705188186	Clock	ENSMUST00000221067.2|Elmo1|ENSMUSG00000041112.18|engulfment and cell motility 1
mm39_v1_chr2_-_38816229_38816366	0.08375603808777696	Clock	ENSMUST00000076275.11|Nr6a1|ENSMUSG00000063972.14|nuclear receptor subfamily 6, group A, member 1	ENSMUST00000142130.2|Nr6a1|ENSMUSG00000063972.14|nuclear receptor subfamily 6, group A, member 1
mm39_v1_chr19_-_29782907_29782907	0.07668698418135514	Clock	ENSMUST00000175726.8|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr7_-_144493560_144493606	0.07596674029316197	Clock	ENSMUST00000093962.5|Ccnd1|ENSMUSG00000070348.6|cyclin D1
mm39_v1_chr9_-_57513510_57513564	0.07310957320058575	Clock	ENSMUST00000215487.2|Cplx3|ENSMUSG00000039714.10|complexin 3	ENSMUST00000045068.10|Cplx3|ENSMUSG00000039714.10|complexin 3
mm39_v1_chr6_-_91450486_91450534	0.06799674826413257	Clock	ENSMUST00000040835.9|Chchd4|ENSMUSG00000034203.9|coiled-coil-helix-coiled-coil-helix domain containing 4
mm39_v1_chr5_-_74692327_74692420	0.06649434298857977	Clock	ENSMUST00000072857.13|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2	ENSMUST00000113542.9|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2	ENSMUST00000151474.3|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2
mm39_v1_chr16_+_43710163_43710183	0.06632033067716367	Clock	ENSMUST00000132859.8|Ccdc191|ENSMUSG00000022701.19|coiled-coil domain containing 191	ENSMUST00000178400.9|Ccdc191|ENSMUSG00000022701.19|coiled-coil domain containing 191
mm39_v1_chrX_+_7439839_7439883	0.06598205403996334	Clock	ENSMUST00000144719.9|Flicr|ENSMUSG00000039545.17|Foxp3 regulating long intergenic noncoding RNA	ENSMUST00000234896.2|Foxp3|ENSMUSG00000039521.14|forkhead box P3
mm39_v1_chr5_-_46014809_46014957	0.0652828820281037	Clock	ENSMUST00000190036.7|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like	ENSMUST00000189859.7|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like	ENSMUST00000186633.3|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like	ENSMUST00000016026.14|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like	ENSMUST00000045586.13|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like	ENSMUST00000238522.2|Lcorl|ENSMUSG00000015882.19|ligand dependent nuclear receptor corepressor-like
mm39_v1_chr16_+_3854806_3855016	0.06384978519079333	Clock	ENSMUST00000137748.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000006136.11|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000157044.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I	ENSMUST00000120009.8|Dnase1|ENSMUSG00000005980.16|deoxyribonuclease I
mm39_v1_chr4_+_44756553_44756601	0.06255637631272595	Clock	ENSMUST00000107824.9|Zcchc7|ENSMUSG00000035649.18|zinc finger, CCHC domain containing 7
mm39_v1_chr19_+_46044972_46045031	0.06096040494707598	Clock	ENSMUST00000111899.8|Pprc1|ENSMUSG00000055491.15|peroxisome proliferative activated receptor, gamma, coactivator-related 1	ENSMUST00000099392.10|Pprc1|ENSMUSG00000055491.15|peroxisome proliferative activated receptor, gamma, coactivator-related 1	ENSMUST00000062322.11|Pprc1|ENSMUSG00000055491.15|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm39_v1_chr17_+_35220252_35220324	0.05905032829352365	Clock	ENSMUST00000174260.8|Vars|ENSMUSG00000007029.17|valyl-tRNA synthetase
mm39_v1_chr16_+_35590745_35590766	0.058396481259539286	Clock	ENSMUST00000231579.2|Hspbap1|ENSMUSG00000022849.6|Hspb associated protein 1
mm39_v1_chr17_-_66384017_66384086	0.057278768319498734	Clock	ENSMUST00000150766.2|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12	ENSMUST00000038116.13|Ankrd12|ENSMUSG00000034647.16|ankyrin repeat domain 12
mm39_v1_chr2_+_48839505_48839629	0.054846494788427874	Clock	ENSMUST00000112745.8|Mbd5|ENSMUSG00000036792.13|methyl-CpG binding domain protein 5	ENSMUST00000112754.8|Mbd5|ENSMUSG00000036792.13|methyl-CpG binding domain protein 5
mm39_v1_chrX_+_8137881_8138029	0.05452059521461172	Clock	ENSMUST00000115590.2|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5
mm39_v1_chr17_-_28705055_28705075	0.0537231815214113	Clock	ENSMUST00000233870.2|Fkbp5|ENSMUSG00000024222.18|FK506 binding protein 5
mm39_v1_chr11_+_74721733_74721746	0.05306820615662722	Clock	ENSMUST00000000291.9|Mnt|ENSMUSG00000000282.13|max binding protein
mm39_v1_chr19_+_9995557_9995597	0.05147213787328691	Clock	ENSMUST00000113161.10|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1	ENSMUST00000238672.2|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1	ENSMUST00000117641.8|Rab3il1|ENSMUSG00000024663.21|RAB3A interacting protein (rabin3)-like 1
mm39_v1_chr7_-_29204812_29204898	0.05140710470007129	Clock	ENSMUST00000183096.8|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3	ENSMUST00000085809.11|Sipa1l3|ENSMUSG00000030583.17|signal-induced proliferation-associated 1 like 3
mm39_v1_chr2_+_32285908_32285908	0.05073688719256722	Clock	ENSMUST00000028162.5|Ptges2|ENSMUSG00000026820.6|prostaglandin E synthase 2
mm39_v1_chr4_+_44756608_44756680	0.0504872008823005	Clock	ENSMUST00000143385.2|Zcchc7|ENSMUSG00000035649.18|zinc finger, CCHC domain containing 7
mm39_v1_chr6_+_17463819_17463833	0.04988828654804019	Clock	ENSMUST00000140070.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr2_-_130266162_130266213	0.04912744613361823	Clock	ENSMUST00000089581.11|Pced1a|ENSMUSG00000037773.15|PC-esterase domain containing 1A
mm39_v1_chr7_-_126294902_126294961	0.048634106979778886	Clock	ENSMUST00000144897.2|Slx1b|ENSMUSG00000059772.13|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
mm39_v1_chr11_-_118180895_118181038	0.04710935869957677	Clock	ENSMUST00000144153.8|Usp36|ENSMUSG00000033909.18|ubiquitin specific peptidase 36
mm39_v1_chr14_+_4230658_4230743	0.04661226308270918	Clock	ENSMUST00000225491.2|Nr1d2|ENSMUSG00000021775.12|nuclear receptor subfamily 1, group D, member 2
mm39_v1_chr11_-_118181044_118181070	0.04655322589453669	Clock	ENSMUST00000106296.9|Usp36|ENSMUSG00000033909.18|ubiquitin specific peptidase 36	ENSMUST00000092382.10|Usp36|ENSMUSG00000033909.18|ubiquitin specific peptidase 36
mm39_v1_chr7_-_46445085_46445146	0.04548388888741779	Clock	ENSMUST00000123725.2|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
mm39_v1_chr19_+_46045675_46045768	0.04528444420938749	Clock	ENSMUST00000126127.8|Pprc1|ENSMUSG00000055491.15|peroxisome proliferative activated receptor, gamma, coactivator-related 1	ENSMUST00000147640.2|Pprc1|ENSMUSG00000055491.15|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm39_v1_chr15_+_80556023_80556062	0.04471945090037849	Clock	ENSMUST00000023044.7|Fam83f|ENSMUSG00000022408.8|family with sequence similarity 83, member F
mm39_v1_chr12_-_32000534_32000558	0.0444968217401338	Clock	ENSMUST00000172314.9|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr15_+_103148824_103148921	0.043837405255609724	Clock	ENSMUST00000036004.16|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000087351.9|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000231141.2|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1
mm39_v1_chr11_+_106680062_106680141	0.043432268645238685	Clock	ENSMUST00000103068.10|Cep95|ENSMUSG00000018372.14|centrosomal protein 95	ENSMUST00000018516.11|Cep95|ENSMUSG00000018372.14|centrosomal protein 95
mm39_v1_chr3_-_101195213_101195273	0.04229130575738553	Clock	ENSMUST00000029456.5|Cd2|ENSMUSG00000027863.9|CD2 antigen
mm39_v1_chr4_-_155947819_155947819	0.041947374106360485	Clock	ENSMUST00000030949.4|Tas1r3|ENSMUSG00000029072.4|taste receptor, type 1, member 3
mm39_v1_chr2_+_14234198_14234215	0.041720974084054875	Clock	ENSMUST00000028045.4|Mrc1|ENSMUSG00000026712.4|mannose receptor, C type 1
mm39_v1_chr18_-_60981981_60982050	0.04083513629961166	Clock	ENSMUST00000177172.8|Tcof1|ENSMUSG00000024613.17|treacle ribosome biogenesis factor 1	ENSMUST00000175934.8|Tcof1|ENSMUSG00000024613.17|treacle ribosome biogenesis factor 1	ENSMUST00000176630.8|Tcof1|ENSMUSG00000024613.17|treacle ribosome biogenesis factor 1
mm39_v1_chr14_-_78970160_78970223	0.03735244872673219	Clock	ENSMUST00000226342.3|Dgkh|ENSMUSG00000034731.12|diacylglycerol kinase, eta
mm39_v1_chr7_+_66489465_66489499	0.03621520438837231	Clock	ENSMUST00000098382.10|Adamts17|ENSMUSG00000058145.17|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm39_v1_chr9_+_14695933_14696059	0.03574313892706975	Clock	ENSMUST00000034405.11|Mre11a|ENSMUSG00000031928.16|MRE11A homolog A, double strand break repair nuclease	ENSMUST00000115632.10|Mre11a|ENSMUSG00000031928.16|MRE11A homolog A, double strand break repair nuclease	ENSMUST00000147305.2|Mre11a|ENSMUSG00000031928.16|MRE11A homolog A, double strand break repair nuclease
mm39_v1_chr16_-_44978986_44979008	0.03476853981751773	Clock	ENSMUST00000180636.8|Slc35a5|ENSMUSG00000022664.12|solute carrier family 35, member A5
mm39_v1_chr19_-_29790352_29790375	0.03331157553342314	Clock	ENSMUST00000099525.5|Ranbp6|ENSMUSG00000074909.6|RAN binding protein 6
mm39_v1_chr5_-_137784912_137784930	0.03328929085540309	Clock	ENSMUST00000031740.16|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chr9_+_40712562_40712598	0.03222956495937289	Clock	ENSMUST00000117557.8|Hspa8|ENSMUSG00000015656.18|heat shock protein 8
mm39_v1_chr3_-_108117754_108117818	0.0321706415388777	Clock	ENSMUST00000117784.8|Atxn7l2|ENSMUSG00000048997.18|ataxin 7-like 2	ENSMUST00000119650.8|Atxn7l2|ENSMUSG00000048997.18|ataxin 7-like 2	ENSMUST00000117409.8|Atxn7l2|ENSMUSG00000048997.18|ataxin 7-like 2
mm39_v1_chr2_+_18059982_18060048	0.031681722129672796	Clock	ENSMUST00000028076.15|Mllt10|ENSMUSG00000026743.17|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
mm39_v1_chr1_-_166237341_166237432	0.03166268318808054	Clock	ENSMUST00000135673.8|Pogk|ENSMUSG00000040596.16|pogo transposable element with KRAB domain	ENSMUST00000169324.8|Pogk|ENSMUSG00000040596.16|pogo transposable element with KRAB domain	ENSMUST00000128861.3|Pogk|ENSMUSG00000040596.16|pogo transposable element with KRAB domain
mm39_v1_chr1_+_181180183_181180206	0.03120962079762119	Clock	ENSMUST00000161880.8|Cnih3|ENSMUSG00000026514.15|cornichon family AMPA receptor auxiliary protein 3	ENSMUST00000027795.14|Cnih3|ENSMUSG00000026514.15|cornichon family AMPA receptor auxiliary protein 3
mm39_v1_chr4_+_32657105_32657167	0.031142469917514123	Clock	ENSMUST00000071642.11|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1	ENSMUST00000178134.2|Mdn1|ENSMUSG00000058006.13|midasin AAA ATPase 1
mm39_v1_chr8_+_91555449_91555470	0.02999591933038805	Clock	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr5_+_146168020_146168195	0.029784240585601716	Clock	ENSMUST00000161181.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000161652.8|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000031640.15|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8	ENSMUST00000159467.2|Cdk8|ENSMUSG00000029635.16|cyclin-dependent kinase 8
mm39_v1_chr11_+_69231589_69231665	0.02951852540904828	Clock	ENSMUST00000218008.2|Rnf227|ENSMUSG00000043419.12|ring finger protein 227	ENSMUST00000151617.3|Rnf227|ENSMUSG00000043419.12|ring finger protein 227
mm39_v1_chr10_+_69048914_69049058	0.028952311362146103	Clock	ENSMUST00000163497.8|Rhobtb1|ENSMUSG00000019944.15|Rho-related BTB domain containing 1	ENSMUST00000164212.8|Rhobtb1|ENSMUSG00000019944.15|Rho-related BTB domain containing 1	ENSMUST00000067908.14|Rhobtb1|ENSMUSG00000019944.15|Rho-related BTB domain containing 1
mm39_v1_chr7_+_66489500_66489561	0.0289438744662559	Clock	ENSMUST00000107478.9|Adamts17|ENSMUSG00000058145.17|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm39_v1_chr18_+_42644552_42644586	0.027945234603633164	Clock	ENSMUST00000237602.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000236088.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000025375.15|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)
mm39_v1_chr4_+_97665992_97666071	0.027877442566507173	Clock	ENSMUST00000107062.9|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000052018.12|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000107057.8|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr7_+_19311212_19311257	0.026461340293936684	Clock	ENSMUST00000108453.2|Zfp296|ENSMUSG00000011267.9|zinc finger protein 296
mm39_v1_chr5_+_3391477_3391488	0.024759312315184107	Clock	ENSMUST00000199156.2|Cdk6|ENSMUSG00000040274.12|cyclin-dependent kinase 6
mm39_v1_chr7_-_46445305_46445508	0.024340965169382573	Clock	ENSMUST00000107653.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000107654.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000014562.14|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	ENSMUST00000152759.8|Hps5|ENSMUSG00000014418.17|HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
mm39_v1_chr6_+_17463925_17464048	0.024258970511688696	Clock	ENSMUST00000115442.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr4_-_131802606_131802652	0.024077003321455705	Clock	ENSMUST00000146021.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr16_-_43709968_43710048	0.023925800937089906	Clock	ENSMUST00000023387.14|Qtrt2|ENSMUSG00000022704.17|queuine tRNA-ribosyltransferase accessory subunit 2
mm39_v1_chr15_+_81695615_81695694	0.023914698499872367	Clock	ENSMUST00000023024.8|Tef|ENSMUSG00000022389.16|thyrotroph embryonic factor
mm39_v1_chr2_-_32584132_32584197	0.02296296800776056	Clock	ENSMUST00000028148.11|Fpgs|ENSMUSG00000009566.13|folylpolyglutamyl synthetase
mm39_v1_chr5_+_45650821_45650868	0.022140982888130267	Clock	ENSMUST00000198534.2|Lap3|ENSMUSG00000039682.13|leucine aminopeptidase 3
mm39_v1_chr3_-_58599812_58599834	0.021424008033179752	Clock	ENSMUST00000070368.8|Siah2|ENSMUSG00000036432.9|siah E3 ubiquitin protein ligase 2
mm39_v1_chr16_+_43710299_43710310	0.02139146137702823	Clock	ENSMUST00000151183.2|Ccdc191|ENSMUSG00000022701.19|coiled-coil domain containing 191
mm39_v1_chr4_-_131802561_131802603	0.02125875230209443	Clock	ENSMUST00000105970.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1	ENSMUST00000105975.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr12_-_71183371_71183475	0.020409513631061364	Clock	ENSMUST00000221367.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000220482.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221892.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221178.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221559.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000166120.9|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000021486.10|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221797.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9	ENSMUST00000221815.2|Timm9|ENSMUSG00000021079.17|translocase of inner mitochondrial membrane 9
mm39_v1_chr2_-_118380149_118380168	0.019636318002028114	Clock	ENSMUST00000090219.13|Bmf|ENSMUSG00000040093.17|BCL2 modifying factor
mm39_v1_chr2_+_115412148_115412225	0.019579821854447937	Clock	ENSMUST00000166472.8|Cdin1|ENSMUSG00000040282.14|CDAN1 interacting nuclease 1	ENSMUST00000110918.3|Cdin1|ENSMUSG00000040282.14|CDAN1 interacting nuclease 1
mm39_v1_chr8_+_121854566_121854679	0.019457194868983018	Clock	ENSMUST00000181609.2|Foxl1|ENSMUSG00000097084.2|forkhead box L1
mm39_v1_chr12_+_17594795_17594893	0.019126916869804503	Clock	ENSMUST00000171737.3|Odc1|ENSMUSG00000011179.9|ornithine decarboxylase, structural 1
mm39_v1_chr8_-_37081091_37081102	0.01848514003444392	Clock	ENSMUST00000033923.14|Dlc1|ENSMUSG00000031523.17|deleted in liver cancer 1
mm39_v1_chr16_-_44979013_44979069	0.01836666454123239	Clock	ENSMUST00000023344.10|Slc35a5|ENSMUSG00000022664.12|solute carrier family 35, member A5
mm39_v1_chr1_-_13061333_13061401	0.018317813135607135	Clock	ENSMUST00000115403.9|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1	ENSMUST00000136197.8|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1	ENSMUST00000115402.8|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr17_-_47922374_47922471	0.01759679939678336	Clock	ENSMUST00000024783.9|Bysl|ENSMUSG00000023988.9|bystin-like
mm39_v1_chrX_-_94488394_94488478	0.017420690968086294	Clock	ENSMUST00000084535.6|Amer1|ENSMUSG00000050332.8|APC membrane recruitment 1
mm39_v1_chr12_+_102094977_102094997	0.017070667626402008	Clock	ENSMUST00000159329.8|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr10_+_69048464_69048503	0.016978461426793955	Clock	ENSMUST00000020101.12|Rhobtb1|ENSMUSG00000019944.15|Rho-related BTB domain containing 1
mm39_v1_chr11_-_51647204_51647289	0.016306864017972413	Clock	ENSMUST00000109092.8|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)	ENSMUST00000064297.5|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr19_+_26600820_26600872	0.0161020590788682	Clock	ENSMUST00000176584.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr11_+_70735751_70735801	0.015984466804096712	Clock	ENSMUST00000177731.8|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000108533.10|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000081362.13|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1	ENSMUST00000178245.2|Rabep1|ENSMUSG00000020817.17|rabaptin, RAB GTPase binding effector protein 1
mm39_v1_chr2_-_168048984_168049062	0.015746102247951612	Clock	ENSMUST00000088001.6|Adnp|ENSMUSG00000051149.16|activity-dependent neuroprotective protein
mm39_v1_chr9_+_43978290_43978319	0.014841539339263105	Clock	ENSMUST00000034508.14|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr5_+_135197228_135197357	0.014585340532596169	Clock	ENSMUST00000111187.10|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B	ENSMUST00000111188.5|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B	ENSMUST00000202606.3|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B
mm39_v1_chr5_+_135197137_135197227	0.013970322317025656	Clock	ENSMUST00000031692.12|Bcl7b|ENSMUSG00000029681.13|B cell CLL/lymphoma 7B
mm39_v1_chr2_-_163261439_163261469	0.013885727490068703	Clock	ENSMUST00000046908.10|Oser1|ENSMUSG00000035399.13|oxidative stress responsive serine rich 1
mm39_v1_chrX_-_47297436_47297568	0.013570561904614649	Clock	ENSMUST00000037960.11|Zdhhc9|ENSMUSG00000036985.13|zinc finger, DHHC domain containing 9
mm39_v1_chr11_+_74540284_74540346	0.013419123304587893	Clock	ENSMUST00000117818.2|Cluh|ENSMUSG00000020741.18|clustered mitochondria (cluA/CLU1) homolog	ENSMUST00000092915.12|Cluh|ENSMUSG00000020741.18|clustered mitochondria (cluA/CLU1) homolog
mm39_v1_chr4_-_145041710_145041739	0.013223147072960876	Clock	ENSMUST00000030339.13|Tnfrsf8|ENSMUSG00000028602.13|tumor necrosis factor receptor superfamily, member 8
mm39_v1_chr17_-_24428351_24428505	0.013030086863356273	Clock	ENSMUST00000024931.6|Ntn3|ENSMUSG00000117406.2|netrin 3
mm39_v1_chr11_+_72332167_72332212	0.012630955743471492	Clock	ENSMUST00000045633.6|Mybbp1a|ENSMUSG00000040463.17|MYB binding protein (P160) 1a
mm39_v1_chr11_-_101676076_101676197	0.012601288736793323	Clock	ENSMUST00000164750.8|Etv4|ENSMUSG00000017724.15|ets variant 4	ENSMUST00000107176.8|Etv4|ENSMUSG00000017724.15|ets variant 4	ENSMUST00000017868.7|Etv4|ENSMUSG00000017724.15|ets variant 4
mm39_v1_chr5_+_77099154_77099215	0.01199382027942264	Clock	ENSMUST00000031160.16|Paics|ENSMUSG00000029247.18|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	ENSMUST00000120912.8|Paics|ENSMUSG00000029247.18|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	ENSMUST00000117536.8|Paics|ENSMUSG00000029247.18|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm39_v1_chr16_+_18695787_18696027	0.011829529446354178	Clock	ENSMUST00000120532.9|Hira|ENSMUSG00000022702.17|histone cell cycle regulator	ENSMUST00000004222.14|Hira|ENSMUSG00000022702.17|histone cell cycle regulator
mm39_v1_chr7_+_127345909_127345947	0.010704852745126949	Clock	ENSMUST00000033081.14|Fbxl19|ENSMUSG00000030811.15|F-box and leucine-rich repeat protein 19
mm39_v1_chr6_+_17463748_17463808	0.010297178896807905	Clock	ENSMUST00000115443.8|Met|ENSMUSG00000009376.16|met proto-oncogene
mm39_v1_chr14_-_20718337_20718422	0.010012324722116963	Clock	ENSMUST00000057090.12|Synpo2l|ENSMUSG00000039376.14|synaptopodin 2-like	ENSMUST00000117386.2|Synpo2l|ENSMUSG00000039376.14|synaptopodin 2-like
mm39_v1_chr2_-_48839218_48839268	0.0095722082183471	Clock	ENSMUST00000090976.10|Orc4|ENSMUSG00000026761.13|origin recognition complex, subunit 4	ENSMUST00000149679.8|Orc4|ENSMUSG00000026761.13|origin recognition complex, subunit 4
mm39_v1_chr12_+_71183622_71183622	0.009146728914598803	Clock	ENSMUST00000149564.8|2700049A03Rik|ENSMUSG00000034601.18|RIKEN cDNA 2700049A03 gene
mm39_v1_chr18_+_35686424_35686475	0.009104443628307602	Clock	ENSMUST00000235679.2|Snhg4|ENSMUSG00000117869.2|small nucleolar RNA host gene 4	ENSMUST00000235176.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000235801.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000237592.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000237230.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4	ENSMUST00000237589.2|Snhg4|ENSMUSG00000117694.2|small nucleolar RNA host gene 4
mm39_v1_chr6_-_77956499_77956605	0.009103693095908302	Clock	ENSMUST00000159626.8|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000075340.12|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2	ENSMUST00000162273.2|Ctnna2|ENSMUSG00000063063.13|catenin (cadherin associated protein), alpha 2
mm39_v1_chrX_+_8137620_8137692	0.008429317872471418	Clock	ENSMUST00000033512.11|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5
mm39_v1_chr18_+_67597929_67597994	0.008083441949138627	Clock	ENSMUST00000025411.9|Prelid3a|ENSMUSG00000024530.9|PRELI domain containing 3A
mm39_v1_chr13_-_76091931_76092069	0.007834080259722471	Clock	ENSMUST00000022078.12|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3	ENSMUST00000109606.3|Rhobtb3|ENSMUSG00000021589.14|Rho-related BTB domain containing 3
mm39_v1_chr12_+_59178072_59178255	0.007581386943448786	Clock	ENSMUST00000176464.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000170992.9|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000176322.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chr9_-_14695801_14695874	0.007545717969413624	Clock	ENSMUST00000214979.2|Ankrd49|ENSMUSG00000031931.5|ankyrin repeat domain 49	ENSMUST00000216037.2|Ankrd49|ENSMUSG00000031931.5|ankyrin repeat domain 49	ENSMUST00000214456.2|Ankrd49|ENSMUSG00000031931.5|ankyrin repeat domain 49
mm39_v1_chrX_+_8137372_8137418	0.007303431897603851	Clock	ENSMUST00000127103.8|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5	ENSMUST00000115591.8|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5
mm39_v1_chr13_-_63712140_63712140	0.00710309684866171	Clock	ENSMUST00000195756.6|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr11_+_78069528_78069600	0.006925621409081341	Clock	ENSMUST00000108338.2|Tlcd1|ENSMUSG00000019437.18|TLC domain containing 1
mm39_v1_chr6_-_99703344_99703375	0.006058497465143821	Clock	ENSMUST00000008273.8|Prok2|ENSMUSG00000030069.16|prokineticin 2	ENSMUST00000101120.11|Prok2|ENSMUSG00000030069.16|prokineticin 2	ENSMUST00000203738.2|Prok2|ENSMUSG00000030069.16|prokineticin 2
mm39_v1_chr3_+_41519289_41519341	0.005952332119251782	Clock	ENSMUST00000168086.7|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr11_-_51647290_51647445	0.00583610272173306	Clock	ENSMUST00000109097.9|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr11_-_100650566_100650581	0.005791596530305973	Clock	ENSMUST00000107361.9|Kcnh4|ENSMUSG00000035355.16|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm39_v1_chr6_+_125073108_125073125	0.0057527625593224215	Clock	ENSMUST00000112390.8|Chd4|ENSMUSG00000063870.13|chromodomain helicase DNA binding protein 4
mm39_v1_chr1_+_59724108_59724182	0.005578881009575631	Clock	ENSMUST00000027174.10|Nop58|ENSMUSG00000026020.10|NOP58 ribonucleoprotein	ENSMUST00000190231.7|Nop58|ENSMUSG00000026020.10|NOP58 ribonucleoprotein	ENSMUST00000191142.7|Nop58|ENSMUSG00000026020.10|NOP58 ribonucleoprotein	ENSMUST00000185772.7|Nop58|ENSMUSG00000026020.10|NOP58 ribonucleoprotein
mm39_v1_chr7_-_98010478_98010531	0.005247041639209691	Clock	ENSMUST00000094161.11|Tsku|ENSMUSG00000049580.13|tsukushi, small leucine rich proteoglycan	ENSMUST00000164726.8|Tsku|ENSMUSG00000049580.13|tsukushi, small leucine rich proteoglycan	ENSMUST00000206414.2|Tsku|ENSMUSG00000049580.13|tsukushi, small leucine rich proteoglycan	ENSMUST00000167405.3|Tsku|ENSMUSG00000049580.13|tsukushi, small leucine rich proteoglycan
mm39_v1_chr1_-_181039509_181039580	0.005218363246180349	Clock	ENSMUST00000162819.9|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26	ENSMUST00000237749.2|Wdr26|ENSMUSG00000038733.15|WD repeat domain 26
mm39_v1_chr19_-_41969558_41969596	0.0051708611811068115	Clock	ENSMUST00000026168.9|Mms19|ENSMUSG00000025159.9|MMS19 cytosolic iron-sulfur assembly component	ENSMUST00000171561.8|Mms19|ENSMUSG00000025159.9|MMS19 cytosolic iron-sulfur assembly component
mm39_v1_chr8_+_123912976_123913002	0.005081861901518052	Clock	ENSMUST00000019422.6|Dpep1|ENSMUSG00000019278.6|dipeptidase 1
mm39_v1_chr17_+_43327412_43327482	0.0049869425739952735	Clock	ENSMUST00000024708.6|Tnfrsf21|ENSMUSG00000023915.6|tumor necrosis factor receptor superfamily, member 21
mm39_v1_chr11_-_100650768_100650837	0.004740738531130179	Clock	ENSMUST00000107363.3|Kcnh4|ENSMUSG00000035355.16|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm39_v1_chr5_+_77099229_77099241	0.003935621951192799	Clock	ENSMUST00000141687.2|Paics|ENSMUSG00000029247.18|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm39_v1_chrX_-_92675719_92675793	0.0038949839399133905	Clock	ENSMUST00000006856.3|Pola1|ENSMUSG00000006678.7|polymerase (DNA directed), alpha 1
mm39_v1_chr11_-_60307847_60307925	0.003662505685904138	Clock	ENSMUST00000108721.9|Atpaf2|ENSMUSG00000042709.16|ATP synthase mitochondrial F1 complex assembly factor 2	ENSMUST00000239016.2|Atpaf2|ENSMUSG00000042709.16|ATP synthase mitochondrial F1 complex assembly factor 2
mm39_v1_chr7_-_34914675_34914923	0.0034116043580144475	Clock	ENSMUST00000118444.3|Lrp3|ENSMUSG00000001802.17|low density lipoprotein receptor-related protein 3	ENSMUST00000122409.8|Lrp3|ENSMUSG00000001802.17|low density lipoprotein receptor-related protein 3
mm39_v1_chr12_-_32000209_32000245	0.003250176112035734	Clock	ENSMUST00000176084.2|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1	ENSMUST00000176103.8|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1	ENSMUST00000167458.9|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chrX_+_5959507_5959507	0.0030024683794999344	Clock	ENSMUST00000103007.4|Nudt11|ENSMUSG00000073295.5|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm39_v1_chr5_-_77099406_77099436	0.002705548759309967	Clock	ENSMUST00000140076.2|Ppat|ENSMUSG00000029246.15|phosphoribosyl pyrophosphate amidotransferase
mm39_v1_chr10_+_116137277_116137333	0.0025691432961235327	Clock	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr7_+_25358589_25358662	0.0023040936140764296	Clock	ENSMUST00000079634.8|Exosc5|ENSMUSG00000061286.8|exosome component 5	ENSMUST00000206561.2|Exosc5|ENSMUSG00000061286.8|exosome component 5
mm39_v1_chr3_+_135531409_135531425	0.0019655510301644637	Clock	ENSMUST00000180196.8|Slc39a8|ENSMUSG00000053897.16|solute carrier family 39 (metal ion transporter), member 8
mm39_v1_chr3_-_95789338_95789386	0.0019350292424514944	Clock	ENSMUST00000161994.2|Ciart|ENSMUSG00000038550.11|circadian associated repressor of transcription
mm39_v1_chr3_-_87702469_87702527	0.001791691535814573	Clock	ENSMUST00000029712.5|Ntrk1|ENSMUSG00000028072.7|neurotrophic tyrosine kinase, receptor, type 1
mm39_v1_chr3_+_40663285_40663337	0.0017492919939212429	Clock	ENSMUST00000091184.9|Slc25a31|ENSMUSG00000069041.9|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31
mm39_v1_chrX_-_36127891_36127899	0.0016244674159520541	Clock	ENSMUST00000115249.10|C330007P06Rik|ENSMUSG00000006423.16|RIKEN cDNA C330007P06 gene	ENSMUST00000115248.10|C330007P06Rik|ENSMUSG00000006423.16|RIKEN cDNA C330007P06 gene
mm39_v1_chr11_-_77380492_77380527	0.001462671361173509	Clock	ENSMUST00000037593.14|Ankrd13b|ENSMUSG00000037907.17|ankyrin repeat domain 13b	ENSMUST00000092892.10|Ankrd13b|ENSMUSG00000037907.17|ankyrin repeat domain 13b
mm39_v1_chr1_-_186438177_186438196	0.0014323145100557013	Clock	ENSMUST00000045288.14|Tgfb2|ENSMUSG00000039239.15|transforming growth factor, beta 2
mm39_v1_chr11_-_106107132_106107189	0.0012906767165247709	Clock	ENSMUST00000002043.10|Ccdc47|ENSMUSG00000078622.9|coiled-coil domain containing 47
mm39_v1_chr14_-_20231871_20231882	0.0010743373816944261	Clock	ENSMUST00000024011.10|Kcnk5|ENSMUSG00000023243.10|potassium channel, subfamily K, member 5
mm39_v1_chr4_+_106954794_106954905	0.0009558005829347556	Clock	ENSMUST00000221740.2|Cdcp2|ENSMUSG00000047636.4|CUB domain containing protein 2
mm39_v1_chr11_+_76108434_76108462	0.0009131094926614422	Clock	ENSMUST00000040806.5|Dbil5|ENSMUSG00000038057.5|diazepam binding inhibitor-like 5
mm39_v1_chr11_-_76108316_76108490	0.0006973301380458026	Clock	ENSMUST00000102500.5|Gemin4|ENSMUSG00000049396.7|gem nuclear organelle associated protein 4
mm39_v1_chr3_+_145281941_145282091	0.00020107398395877578	Clock	ENSMUST00000199033.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000098534.9|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000200574.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000196413.5|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6	ENSMUST00000197604.3|Znhit6|ENSMUSG00000074182.9|zinc finger, HIT type 6
mm39_v1_chr5_+_120254530_120254617	2.949672965171418e-05	Clock	ENSMUST00000031590.12|Rbm19|ENSMUSG00000029594.13|RNA binding motif protein 19
