mm39_v1_chr13_+_23728222_23728222	2.8582187478575385	En2	ENSMUST00000075558.5|H3c7|ENSMUSG00000100210.3|H3 clustered histone 7
mm39_v1_chr3_+_96175970_96176004	2.1326399209474833	En2	ENSMUST00000098843.3|H3c13|ENSMUSG00000074403.3|H3 clustered histone 13
mm39_v1_chr13_+_21901791_21901829	1.7343311418532232	En2	ENSMUST00000188775.2|H3c10|ENSMUSG00000101355.2|H3 clustered histone 10
mm39_v1_chr13_-_22017677_22017677	1.0894510972220364	En2	ENSMUST00000081342.7|H2ac24|ENSMUSG00000094777.3|H2A clustered histone 24
mm39_v1_chr13_+_23758555_23758623	1.0030483895446234	En2	ENSMUST00000090776.7|H2ac7|ENSMUSG00000071478.7|H2A clustered histone 7
mm39_v1_chrM_+_11735_11751	0.7771102136237786	En2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm39_v1_chrM_+_9870_9885	0.7584042535249578	En2	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.1|mitochondrially encoded NADH dehydrogenase 4L
mm39_v1_chrM_+_3906_3942	0.7230089487103925	En2	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr12_+_108145802_108145842	0.6436300467177438	En2	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr13_-_22227114_22227139	0.6283250202499849	En2	ENSMUST00000091741.6|H2ac11|ENSMUSG00000069301.6|H2A clustered histone 11
mm39_v1_chrM_+_2743_2761	0.4948977082418575	En2	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm39_v1_chr7_-_25454177_25454197	0.45130189582429653	En2	ENSMUST00000206832.2|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1
mm39_v1_chr9_-_107512566_107512584	0.4403714883567297	En2	ENSMUST00000055704.12|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chrM_+_7006_7021	0.4284815877389182	En2	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm39_v1_chr1_-_92412835_92412835	0.42220794375578075	En2	ENSMUST00000214928.3|Olfr1416|ENSMUSG00000067064.5|olfactory receptor 1416
mm39_v1_chr2_-_111843053_111843053	0.4174364469297711	En2	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr4_+_42949814_42949924	0.40875462212029734	En2	ENSMUST00000037872.10|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5	ENSMUST00000098112.9|Dnajb5|ENSMUSG00000036052.15|DnaJ heat shock protein family (Hsp40) member B5
mm39_v1_chr12_+_108145997_108146089	0.38795458695786667	En2	ENSMUST00000101055.5|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr8_-_32440071_32440108	0.3825122991762184	En2	ENSMUST00000207678.3|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chrM_+_10167_10167	0.37937668753810505	En2	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm39_v1_chrX_+_101163053_101163096	0.36880742295360114	En2	ENSMUST00000113627.4|Pin4|ENSMUSG00000079480.4|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm39_v1_chr5_-_124387812_124387845	0.3614388344429651	En2	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chrX_+_128650486_128650574	0.35493041119566776	En2	ENSMUST00000167619.9|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2	ENSMUST00000037854.15|Diaph2|ENSMUSG00000034480.19|diaphanous related formin 2
mm39_v1_chr16_+_33504740_33504825	0.3505136442146498	En2	ENSMUST00000232568.2|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chr9_-_107512511_107512552	0.34508960321701154	En2	ENSMUST00000192615.6|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2	ENSMUST00000192837.2|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2	ENSMUST00000193876.2|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr7_-_25454126_25454176	0.3394774057862962	En2	ENSMUST00000108401.3|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1	ENSMUST00000043765.14|Hnrnpul1|ENSMUSG00000040725.14|heterogeneous nuclear ribonucleoprotein U-like 1
mm39_v1_chr18_+_39126325_39126336	0.3145162515485357	En2	ENSMUST00000137497.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr8_-_84321032_84321061	0.311543917096981	En2	ENSMUST00000163837.2|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase
mm39_v1_chr9_+_20193647_20193647	0.30231453437004324	En2	ENSMUST00000071725.4|Olfr39|ENSMUSG00000059623.7|olfactory receptor 39	ENSMUST00000212983.3|Olfr39|ENSMUSG00000059623.7|olfactory receptor 39
mm39_v1_chr8_-_84321069_84321113	0.292164332544404	En2	ENSMUST00000019382.17|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase	ENSMUST00000212630.2|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase	ENSMUST00000165740.9|Tecr|ENSMUSG00000031708.18|trans-2,3-enoyl-CoA reductase
mm39_v1_chr19_+_6096606_6096692	0.2873015408803691	En2	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr18_+_39126178_39126240	0.2814905995303437	En2	ENSMUST00000097593.9|Arhgap26|ENSMUSG00000036452.19|Rho GTPase activating protein 26
mm39_v1_chr5_+_135135735_135135772	0.2814630061056239	En2	ENSMUST00000201977.4|Mlxipl|ENSMUSG00000005373.14|MLX interacting protein-like	ENSMUST00000005507.10|Mlxipl|ENSMUSG00000005373.14|MLX interacting protein-like
mm39_v1_chr18_+_42644552_42644586	0.26624707892017585	En2	ENSMUST00000237602.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000236088.2|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)	ENSMUST00000025375.15|Tcerg1|ENSMUSG00000024498.17|transcription elongation regulator 1 (CA150)
mm39_v1_chr11_-_109502243_109502258	0.2632468671751727	En2	ENSMUST00000103060.10|Wipi1|ENSMUSG00000041895.16|WD repeat domain, phosphoinositide interacting 1	ENSMUST00000047186.10|Wipi1|ENSMUSG00000041895.16|WD repeat domain, phosphoinositide interacting 1	ENSMUST00000106689.2|Wipi1|ENSMUSG00000041895.16|WD repeat domain, phosphoinositide interacting 1
mm39_v1_chr7_-_30259253_30259267	0.2602769297434961	En2	ENSMUST00000108164.8|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)
mm39_v1_chr7_-_30259025_30259084	0.2562988062003314	En2	ENSMUST00000043975.11|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)	ENSMUST00000156241.2|Lin37|ENSMUSG00000036845.13|lin-37 homolog (C. elegans)
mm39_v1_chr5_-_84565218_84565248	0.2526378077218661	En2	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chr5_-_106844396_106844516	0.23324921342658925	En2	ENSMUST00000137285.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000124263.2|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000149128.3|Gm28039|ENSMUSG00000098302.2|predicted gene, 28039	ENSMUST00000112695.4|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000155495.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000135108.2|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr5_-_143846600_143846665	0.23240392574465307	En2	ENSMUST00000031613.11|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	ENSMUST00000100483.3|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm39_v1_chr1_-_155848917_155849012	0.23093091147772823	En2	ENSMUST00000138762.8|Cep350|ENSMUSG00000033671.19|centrosomal protein 350
mm39_v1_chr19_-_4171536_4171581	0.2255993663738947	En2	ENSMUST00000025767.14|Aip|ENSMUSG00000024847.16|aryl-hydrocarbon receptor-interacting protein
mm39_v1_chr2_-_153079828_153079854	0.22495056471409564	En2	ENSMUST00000109795.2|Plagl2|ENSMUSG00000051413.18|pleiomorphic adenoma gene-like 2
mm39_v1_chr16_+_33504908_33504924	0.22441428512922987	En2	ENSMUST00000126532.2|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chr11_+_68986043_68986115	0.2192662635146465	En2	ENSMUST00000101004.9|Per1|ENSMUSG00000020893.18|period circadian clock 1
mm39_v1_chr12_-_85197985_85198049	0.21727145830999936	En2	ENSMUST00000019379.9|Rps6kl1|ENSMUSG00000019235.10|ribosomal protein S6 kinase-like 1	ENSMUST00000221972.2|Rps6kl1|ENSMUSG00000019235.10|ribosomal protein S6 kinase-like 1
mm39_v1_chr2_-_45007407_45007421	0.21534411978667947	En2	ENSMUST00000176438.9|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr14_+_58308004_58308004	0.2144586976142521	En2	ENSMUST00000165526.9|Fgf9|ENSMUSG00000021974.16|fibroblast growth factor 9
mm39_v1_chr1_+_92545510_92545510	0.21400181650206357	En2	ENSMUST00000213247.2|Olfr12|ENSMUSG00000061616.6|olfactory receptor 12
mm39_v1_chr10_-_12745109_12745231	0.21193509250668555	En2	ENSMUST00000218635.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr2_+_152596075_152596106	0.20867077714432639	En2	ENSMUST00000010020.12|Cox4i2|ENSMUSG00000009876.14|cytochrome c oxidase subunit 4I2
mm39_v1_chr3_-_146388165_146388277	0.20235535221008455	En2	ENSMUST00000124931.8|Samd13|ENSMUSG00000048652.13|sterile alpha motif domain containing 13	ENSMUST00000147113.2|Samd13|ENSMUSG00000048652.13|sterile alpha motif domain containing 13
mm39_v1_chr5_-_131645437_131645450	0.1984963601743996	En2	ENSMUST00000161804.9|Auts2|ENSMUSG00000029673.20|autism susceptibility candidate 2
mm39_v1_chr2_-_90054837_90054837	0.19543585282781278	En2	ENSMUST00000213994.3|Olfr1506|ENSMUSG00000075064.6|olfactory receptor 1506
mm39_v1_chrX_-_156198282_156198309	0.19223862597416683	En2	ENSMUST00000079945.11|Phex|ENSMUSG00000057457.12|phosphate regulating endopeptidase homolog, X-linked	ENSMUST00000138396.3|Phex|ENSMUSG00000057457.12|phosphate regulating endopeptidase homolog, X-linked
mm39_v1_chr4_+_136038263_136038296	0.19134117409724516	En2	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr8_-_3675525_3675548	0.19050692617949894	En2	ENSMUST00000144977.2|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)	ENSMUST00000136105.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)	ENSMUST00000128566.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr4_+_136038301_136038365	0.18787205137437024	En2	ENSMUST00000084219.12|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr4_+_136038243_136038258	0.18217163816538096	En2	ENSMUST00000131671.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr2_+_90229027_90229027	0.1802487047645766	En2	ENSMUST00000216111.3|Olfr1274|ENSMUSG00000082980.6|olfactory receptor 1274
mm39_v1_chr9_+_19716202_19716204	0.18015514006307737	En2	ENSMUST00000212540.3|Olfr859|ENSMUSG00000095448.4|olfactory receptor 859	ENSMUST00000217280.2|Olfr859|ENSMUSG00000095448.4|olfactory receptor 859
mm39_v1_chr1_-_131455039_131455123	0.1734502040310625	En2	ENSMUST00000097588.9|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2	ENSMUST00000186543.7|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr5_-_106844685_106844707	0.17249216338879206	En2	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr5_-_62923463_62923615	0.1697947152779918	En2	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr17_-_47813201_47813221	0.16937180245346103	En2	ENSMUST00000233174.2|Taf8|ENSMUSG00000023980.8|TATA-box binding protein associated factor 8	ENSMUST00000233121.2|Taf8|ENSMUSG00000023980.8|TATA-box binding protein associated factor 8	ENSMUST00000067103.4|Taf8|ENSMUSG00000023980.8|TATA-box binding protein associated factor 8
mm39_v1_chr17_-_29226886_29226937	0.16675853830031254	En2	ENSMUST00000232723.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr14_-_70666513_70666545	0.1653576636885057	En2	ENSMUST00000226426.2|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2	ENSMUST00000048129.6|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2
mm39_v1_chr6_-_116693849_116693885	0.16278901767758308	En2	ENSMUST00000056623.13|Tmem72|ENSMUSG00000048108.14|transmembrane protein 72
mm39_v1_chr5_+_36641922_36641964	0.16106579083760245	En2	ENSMUST00000060100.3|Ccdc96|ENSMUSG00000050677.3|coiled-coil domain containing 96
mm39_v1_chr16_+_37909363_37909426	0.15640099136619795	En2	ENSMUST00000023507.13|Gsk3b|ENSMUSG00000022812.15|glycogen synthase kinase 3 beta
mm39_v1_chrX_+_23559282_23559357	0.1552334728332377	En2	ENSMUST00000035766.13|Wdr44|ENSMUSG00000036769.15|WD repeat domain 44	ENSMUST00000101670.3|Wdr44|ENSMUSG00000036769.15|WD repeat domain 44
mm39_v1_chr16_+_3648742_3648762	0.1466287768255121	En2	ENSMUST00000214238.2|Olfr15|ENSMUSG00000059043.3|olfactory receptor 15	ENSMUST00000214590.2|Olfr15|ENSMUSG00000059043.3|olfactory receptor 15
mm39_v1_chr19_-_12100560_12100567	0.1455254074869463	En2	ENSMUST00000213471.2|Olfr76|ENSMUSG00000067522.4|olfactory receptor 76	ENSMUST00000214676.2|Olfr76|ENSMUSG00000067522.4|olfactory receptor 76
mm39_v1_chr11_-_86884507_86884538	0.13983315204322694	En2	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr12_-_85327136_85327209	0.137290094551387	En2	ENSMUST00000065913.8|Acyp1|ENSMUSG00000008822.16|acylphosphatase 1, erythrocyte (common) type	ENSMUST00000008966.13|Acyp1|ENSMUSG00000008822.16|acylphosphatase 1, erythrocyte (common) type
mm39_v1_chr10_+_85222677_85222704	0.13623604089553867	En2	ENSMUST00000105307.8|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11	ENSMUST00000020231.10|Btbd11|ENSMUSG00000020042.16|BTB (POZ) domain containing 11
mm39_v1_chr7_+_25380263_25380286	0.1316078892783892	En2	ENSMUST00000205325.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2	ENSMUST00000206913.2|B9d2|ENSMUSG00000063439.8|B9 protein domain 2
mm39_v1_chr7_+_63835285_63835349	0.13105979359346095	En2	ENSMUST00000206263.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000206107.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000205731.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000206706.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1	ENSMUST00000205690.2|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1
mm39_v1_chr10_-_128918779_128918779	0.11997274066697773	En2	ENSMUST00000213579.2|Olfr767|ENSMUSG00000059762.5|olfactory receptor 767
mm39_v1_chr17_+_34457868_34457938	0.11841442752192517	En2	ENSMUST00000095342.11|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000167280.8|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000236838.2|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus
mm39_v1_chr1_+_104696235_104696254	0.1140332843020695	En2	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr19_+_12364643_12364664	0.11031655530006151	En2	ENSMUST00000217062.3|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000216145.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000213657.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440
mm39_v1_chrX_+_20554193_20554279	0.10764228933238723	En2	ENSMUST00000115364.8|Cdk16|ENSMUSG00000031065.15|cyclin-dependent kinase 16
mm39_v1_chr8_-_84963653_84963694	0.10600597236204953	En2	ENSMUST00000039480.7|Zswim4|ENSMUSG00000035671.7|zinc finger SWIM-type containing 4
mm39_v1_chr11_+_75422516_75422569	0.10550734046904746	En2	ENSMUST00000149727.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000108433.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000042561.14|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2	ENSMUST00000143035.8|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr4_+_108576846_108576846	0.1037221414109733	En2	ENSMUST00000178992.2|3110021N24Rik|ENSMUSG00000094958.2|RIKEN cDNA 3110021N24 gene
mm39_v1_chr9_-_96601574_96601618	0.1011212762412678	En2	ENSMUST00000128269.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr15_+_82230155_82230304	0.09934124370440744	En2	ENSMUST00000023086.15|Smdt1|ENSMUSG00000022452.17|single-pass membrane protein with aspartate rich tail 1
mm39_v1_chr15_+_102314578_102314768	0.09378707543154328	En2	ENSMUST00000170884.8|Sp1|ENSMUSG00000001280.14|trans-acting transcription factor 1	ENSMUST00000163709.8|Sp1|ENSMUSG00000001280.14|trans-acting transcription factor 1
mm39_v1_chrX_+_159551009_159551114	0.09259598149519409	En2	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr17_-_37523969_37524009	0.09079155588469552	En2	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr18_+_82932747_82932788	0.08941373600901356	En2	ENSMUST00000071233.7|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr10_-_44024843_44024866	0.0871043163123207	En2	ENSMUST00000200401.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr17_+_21165573_21165762	0.08509780698136278	En2	ENSMUST00000007708.14|Ppp2r1a|ENSMUSG00000007564.16|protein phosphatase 2, regulatory subunit A, alpha
mm39_v1_chr13_+_75855695_75855830	0.08442790059194707	En2	ENSMUST00000222194.2|Ell2|ENSMUSG00000001542.8|elongation factor for RNA polymerase II 2	ENSMUST00000223535.2|Ell2|ENSMUSG00000001542.8|elongation factor for RNA polymerase II 2	ENSMUST00000222853.2|Ell2|ENSMUSG00000001542.8|elongation factor for RNA polymerase II 2
mm39_v1_chr10_+_73657689_73657715	0.08343192497901004	En2	ENSMUST00000064562.14|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193174.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105426.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000129404.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000131321.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000126920.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000147189.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105424.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000092420.13|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000105429.10|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000193361.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000131724.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000152655.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000151116.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000155701.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000152819.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125517.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000124046.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000146682.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177107.8|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000149977.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000191854.6|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr17_+_21031817_21031880	0.08187924346094301	En2	ENSMUST00000232810.2|Vmn1r229|ENSMUSG00000117148.2|vomeronasal 1 receptor 229	ENSMUST00000233712.2|Vmn1r229|ENSMUSG00000117148.2|vomeronasal 1 receptor 229	ENSMUST00000232852.2|Vmn1r229|ENSMUSG00000117148.2|vomeronasal 1 receptor 229
mm39_v1_chr8_-_108129829_108129845	0.07796322870700165	En2	ENSMUST00000003947.9|Nqo1|ENSMUSG00000003849.9|NAD(P)H dehydrogenase, quinone 1
mm39_v1_chr17_-_29226965_29226976	0.07585417934009471	En2	ENSMUST00000009138.13|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38	ENSMUST00000119274.3|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr12_+_52746158_52746186	0.07579362850494227	En2	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr11_+_68950533_68950571	0.07547407150461857	En2	ENSMUST00000051888.4|Borcs6|ENSMUSG00000045176.4|BLOC-1 related complex subunit 6
mm39_v1_chr5_-_36641456_36641650	0.07481961805873684	En2	ENSMUST00000119916.2|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B	ENSMUST00000031097.8|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B
mm39_v1_chr3_+_103740056_103740156	0.07465559920132686	En2	ENSMUST00000106822.2|Bcl2l15|ENSMUSG00000044165.13|BCLl2-like 15
mm39_v1_chr1_-_92446383_92446383	0.07411001509421596	En2	ENSMUST00000062353.12|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr9_-_71070506_71070572	0.07406229434698319	En2	ENSMUST00000074465.9|Aqp9|ENSMUSG00000032204.14|aquaporin 9
mm39_v1_chr6_-_30304512_30304569	0.07102996348827313	En2	ENSMUST00000094543.3|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H	ENSMUST00000102993.10|Ube2h|ENSMUSG00000039159.17|ubiquitin-conjugating enzyme E2H
mm39_v1_chr17_-_29226700_29226804	0.07023555788613604	En2	ENSMUST00000233441.2|Stk38|ENSMUSG00000024006.18|serine/threonine kinase 38
mm39_v1_chr14_+_32321341_32321498	0.06992822226137825	En2	ENSMUST00000187377.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000189022.8|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1	ENSMUST00000186452.7|Prrxl1|ENSMUSG00000041730.15|paired related homeobox protein-like 1
mm39_v1_chr11_+_75422953_75422979	0.06724149408794067	En2	ENSMUST00000127226.3|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr16_+_44913974_44913985	0.06683658903782608	En2	ENSMUST00000099498.10|Ccdc80|ENSMUSG00000022665.16|coiled-coil domain containing 80
mm39_v1_chrM_+_9459_9459	0.06651699400794128	En2	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm39_v1_chr3_+_75464837_75464869	0.06407399742802448	En2	ENSMUST00000161776.8|Serpini1|ENSMUSG00000027834.16|serine (or cysteine) peptidase inhibitor, clade I, member 1	ENSMUST00000029423.9|Serpini1|ENSMUSG00000027834.16|serine (or cysteine) peptidase inhibitor, clade I, member 1
mm39_v1_chr14_+_60615128_60615153	0.06402776065946736	En2	ENSMUST00000022561.9|Amer2|ENSMUSG00000021986.10|APC membrane recruitment 2
mm39_v1_chr7_+_106630381_106630381	0.06207819765605496	En2	ENSMUST00000213623.2|Olfr713|ENSMUSG00000073898.4|olfactory receptor 713
mm39_v1_chr17_+_3447465_3447482	0.06156192016303054	En2	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr12_+_102094977_102094997	0.059731694209693174	En2	ENSMUST00000159329.8|Slc24a4|ENSMUSG00000041771.15|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm39_v1_chr8_+_84682136_84682293	0.05926874446552106	En2	ENSMUST00000005607.9|Asf1b|ENSMUSG00000005470.9|anti-silencing function 1B histone chaperone
mm39_v1_chr9_+_20209828_20209891	0.05899194944304014	En2	ENSMUST00000215540.2|Olfr873|ENSMUSG00000049028.9|olfactory receptor 873	ENSMUST00000075717.7|Olfr873|ENSMUSG00000049028.9|olfactory receptor 873
mm39_v1_chr13_+_118851214_118851238	0.05457124108594412	En2	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr7_+_78922947_78922973	0.05422644430300398	En2	ENSMUST00000037315.13|Abhd2|ENSMUSG00000039202.13|abhydrolase domain containing 2
mm39_v1_chr2_+_89821818_89821818	0.053829075028246264	En2	ENSMUST00000216953.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261
mm39_v1_chr15_+_39522905_39522982	0.04982934307869205	En2	ENSMUST00000226410.2|Rims2|ENSMUSG00000037386.17|regulating synaptic membrane exocytosis 2
mm39_v1_chr2_-_84545504_84545562	0.04965800847846658	En2	ENSMUST00000035840.6|Zdhhc5|ENSMUSG00000034075.11|zinc finger, DHHC domain containing 5
mm39_v1_chr11_-_73290321_73290440	0.04923185941223103	En2	ENSMUST00000131253.2|Olfr1|ENSMUSG00000069823.12|olfactory receptor 1	ENSMUST00000120303.9|Olfr1|ENSMUSG00000069823.12|olfactory receptor 1
mm39_v1_chr11_+_75422925_75422938	0.049054834545051156	En2	ENSMUST00000169547.9|Slc43a2|ENSMUSG00000038178.17|solute carrier family 43, member 2
mm39_v1_chr11_-_118103540_118103574	0.04747084872857873	En2	ENSMUST00000106302.9|Cyth1|ENSMUSG00000017132.18|cytohesin 1	ENSMUST00000151165.2|Cyth1|ENSMUSG00000017132.18|cytohesin 1
mm39_v1_chr12_-_111780268_111780292	0.04671679364920291	En2	ENSMUST00000021715.6|Xrcc3|ENSMUSG00000021287.13|X-ray repair complementing defective repair in Chinese hamster cells 3
mm39_v1_chr2_+_89821565_89821582	0.04461672319857388	En2	ENSMUST00000111509.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261	ENSMUST00000213909.3|Olfr1261|ENSMUSG00000061295.6|olfactory receptor 1261
mm39_v1_chr3_+_96537235_96537273	0.043665881308995146	En2	ENSMUST00000048915.11|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000196456.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a	ENSMUST00000198027.5|Rbm8a|ENSMUSG00000038374.11|RNA binding motif protein 8a
mm39_v1_chr17_+_34544632_34544654	0.042933515152880866	En2	ENSMUST00000050325.10|H2-Eb2|ENSMUSG00000067341.7|histocompatibility 2, class II antigen E beta2
mm39_v1_chr11_+_120358461_120358545	0.042926540228012	En2	ENSMUST00000140862.7|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate	ENSMUST00000106205.9|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate	ENSMUST00000106203.9|Hgs|ENSMUSG00000025793.18|HGF-regulated tyrosine kinase substrate
mm39_v1_chr9_+_32027335_32027432	0.04284529011089882	En2	ENSMUST00000174641.8|Arhgap32|ENSMUSG00000041444.15|Rho GTPase activating protein 32
mm39_v1_chr10_-_126956991_126957019	0.04239232758804712	En2	ENSMUST00000080975.6|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma	ENSMUST00000164259.9|Os9|ENSMUSG00000040462.14|amplified in osteosarcoma
mm39_v1_chr5_+_138185747_138185829	0.041976039119372234	En2	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chr2_-_27365633_27365710	0.04146630875420467	En2	ENSMUST00000138693.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000113941.9|Brd3|ENSMUSG00000026918.17|bromodomain containing 3	ENSMUST00000077737.13|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr11_-_69127848_69127865	0.03773609949192078	En2	ENSMUST00000021259.9|Gucy2e|ENSMUSG00000020890.12|guanylate cyclase 2e	ENSMUST00000108665.8|Gucy2e|ENSMUSG00000020890.12|guanylate cyclase 2e	ENSMUST00000108664.2|Gucy2e|ENSMUSG00000020890.12|guanylate cyclase 2e
mm39_v1_chr2_-_57004933_57005050	0.03623035686515895	En2	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr19_-_28945194_28945253	0.03382354462025517	En2	ENSMUST00000162110.8|Spata6l|ENSMUSG00000064202.16|spermatogenesis associated 6 like
mm39_v1_chr6_+_37847721_37847892	0.03352920348259727	En2	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr5_-_143279378_143279378	0.0332958797016073	En2	ENSMUST00000212715.2|Zfp853|ENSMUSG00000093910.3|zinc finger protein 853
mm39_v1_chr8_-_45835234_45835328	0.03137456543217148	En2	ENSMUST00000093526.13|Fam149a|ENSMUSG00000070044.16|family with sequence similarity 149, member A
mm39_v1_chr11_+_116734104_116734104	0.030495863913506584	En2	ENSMUST00000106370.10|Mettl23|ENSMUSG00000090266.11|methyltransferase like 23
mm39_v1_chr5_-_146158201_146158230	0.029885292172458496	En2	ENSMUST00000161574.8|Rnf6|ENSMUSG00000029634.16|ring finger protein (C3H2C3 type) 6
mm39_v1_chr7_+_141503411_141503540	0.02965012072790662	En2	ENSMUST00000078200.12|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2	ENSMUST00000018971.15|Brsk2|ENSMUSG00000053046.17|BR serine/threonine kinase 2
mm39_v1_chr2_+_177760768_177760955	0.027752217827029364	En2	ENSMUST00000108917.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr12_-_84497718_84497792	0.02737655354535163	En2	ENSMUST00000085192.7|Aldh6a1|ENSMUSG00000021238.12|aldehyde dehydrogenase family 6, subfamily A1	ENSMUST00000220491.2|Aldh6a1|ENSMUSG00000021238.12|aldehyde dehydrogenase family 6, subfamily A1
mm39_v1_chr4_+_21848039_21848077	0.027313606219298382	En2	ENSMUST00000098238.9|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich	ENSMUST00000108229.2|Pnisr|ENSMUSG00000028248.16|PNN interacting serine/arginine-rich
mm39_v1_chr11_+_95915366_95915384	0.026636677520357924	En2	ENSMUST00000103157.10|Gip|ENSMUSG00000014351.13|gastric inhibitory polypeptide
mm39_v1_chr19_-_56810593_56810654	0.026634711538037238	En2	ENSMUST00000118592.8|Ccdc186|ENSMUSG00000035173.15|coiled-coil domain containing 186
mm39_v1_chr1_+_127657142_127657155	0.026024019022458707	En2	ENSMUST00000038006.8|Acmsd|ENSMUSG00000026348.8|amino carboxymuconate semialdehyde decarboxylase
mm39_v1_chr1_-_132318039_132318105	0.024020524111682928	En2	ENSMUST00000132435.2|Tmcc2|ENSMUSG00000042066.17|transmembrane and coiled-coil domains 2
mm39_v1_chr16_+_33504829_33504842	0.02398579813002218	En2	ENSMUST00000152782.8|Heg1|ENSMUSG00000075254.13|heart development protein with EGF-like domains 1
mm39_v1_chr2_-_122016670_122016670	0.02289174774964189	En2	ENSMUST00000028665.5|Patl2|ENSMUSG00000027233.5|protein associated with topoisomerase II homolog 2 (yeast)
mm39_v1_chr18_+_34757666_34757683	0.02161613361346557	En2	ENSMUST00000167161.9|Kif20a|ENSMUSG00000003779.17|kinesin family member 20A
mm39_v1_chr5_-_53864874_53865047	0.019995448010036224	En2	ENSMUST00000031093.5|Cckar|ENSMUSG00000029193.8|cholecystokinin A receptor
mm39_v1_chr10_-_128361731_128361746	0.018359841051199803	En2	ENSMUST00000026427.8|Esyt1|ENSMUSG00000025366.9|extended synaptotagmin-like protein 1
mm39_v1_chr4_+_109835224_109835250	0.018246554959237812	En2	ENSMUST00000061187.4|Dmrta2|ENSMUSG00000047143.4|doublesex and mab-3 related transcription factor like family A2
mm39_v1_chr14_+_33662976_33663011	0.017885349686113636	En2	ENSMUST00000100720.2|Gdf2|ENSMUSG00000072625.2|growth differentiation factor 2
mm39_v1_chr14_+_50360643_50360643	0.01766532012189174	En2	ENSMUST00000215317.2|Olfr727|ENSMUSG00000059488.4|olfactory receptor 727
mm39_v1_chr18_+_84869456_84869473	0.016738641746669596	En2	ENSMUST00000160180.9|Cyb5a|ENSMUSG00000024646.15|cytochrome b5 type A (microsomal)
mm39_v1_chr3_-_32546380_32546380	0.016195212278719427	En2	ENSMUST00000164954.3|Kcnmb3|ENSMUSG00000091091.3|potassium large conductance calcium-activated channel, subfamily M, beta member 3
mm39_v1_chr12_-_56660054_56660113	0.015965017462332285	En2	ENSMUST00000072631.6|Nkx2-9|ENSMUSG00000058669.8|NK2 homeobox 9
mm39_v1_chr11_-_99265721_99265735	0.015465975904474741	En2	ENSMUST00000006963.3|Krt28|ENSMUSG00000055937.2|keratin 28
mm39_v1_chr4_-_43823866_43823895	0.015112929632842437	En2	ENSMUST00000215406.2|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156	ENSMUST00000079234.6|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156	ENSMUST00000214843.2|Olfr156|ENSMUSG00000110970.3|olfactory receptor 156
mm39_v1_chr8_-_3675024_3675049	0.014724845781987949	En2	ENSMUST00000133459.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr3_-_151953894_151953912	0.014603663203859004	En2	ENSMUST00000196529.5|Nexn|ENSMUSG00000039103.13|nexilin
mm39_v1_chr6_+_42762027_42762038	0.014145580650243525	En2	ENSMUST00000217701.2|Olfr452|ENSMUSG00000094192.6|olfactory receptor 452	ENSMUST00000215719.2|Olfr452|ENSMUSG00000094192.6|olfactory receptor 452	ENSMUST00000214465.2|Olfr452|ENSMUSG00000094192.6|olfactory receptor 452
mm39_v1_chr3_+_113824181_113824220	0.01280245585444835	En2	ENSMUST00000123619.8|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1	ENSMUST00000092155.12|Col11a1|ENSMUSG00000027966.21|collagen, type XI, alpha 1
mm39_v1_chr8_+_21382681_21382685	0.012688869263402023	En2	ENSMUST00000098908.4|Defb33|ENSMUSG00000074454.4|defensin beta 33
mm39_v1_chr1_+_173924457_173924457	0.012573252458384856	En2	ENSMUST00000213832.2|Olfr427|ENSMUSG00000059371.5|olfactory receptor 427
mm39_v1_chr12_+_99930757_99930798	0.012470507074085674	En2	ENSMUST00000160413.8|Kcnk13|ENSMUSG00000045404.17|potassium channel, subfamily K, member 13	ENSMUST00000177549.8|Kcnk13|ENSMUSG00000045404.17|potassium channel, subfamily K, member 13	ENSMUST00000049788.9|Kcnk13|ENSMUSG00000045404.17|potassium channel, subfamily K, member 13
mm39_v1_chr10_+_127734384_127734401	0.01209335312683552	En2	ENSMUST00000047134.8|Sdr9c7|ENSMUSG00000040127.14|4short chain dehydrogenase/reductase family 9C, member 7
mm39_v1_chr18_+_23548534_23548567	0.012080121411168819	En2	ENSMUST00000221880.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000220904.2|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha	ENSMUST00000047954.15|Dtna|ENSMUSG00000024302.17|dystrobrevin alpha
mm39_v1_chr2_-_111854754_111854757	0.011199691582546727	En2	ENSMUST00000213602.2|Olfr1311|ENSMUSG00000109403.3|olfactory receptor 1311	ENSMUST00000215321.2|Olfr1311|ENSMUSG00000109403.3|olfactory receptor 1311
mm39_v1_chr10_+_88721854_88721872	0.011197758460275944	En2	ENSMUST00000020255.8|Slc5a8|ENSMUSG00000020062.8|solute carrier family 5 (iodide transporter), member 8
mm39_v1_chr18_-_88945571_88945605	0.01064331765606556	En2	ENSMUST00000147313.2|Socs6|ENSMUSG00000056153.16|suppressor of cytokine signaling 6
mm39_v1_chr11_+_114742331_114742380	0.009539885014979736	En2	ENSMUST00000177952.8|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr16_-_45544960_45544982	0.009227970280416994	En2	ENSMUST00000096057.5|Tagln3|ENSMUSG00000022658.11|transgelin 3
mm39_v1_chr13_-_22289994_22289994	0.0084773623689926	En2	ENSMUST00000227357.2|Vmn1r189|ENSMUSG00000099611.3|vomeronasal 1 receptor 189	ENSMUST00000228428.2|Vmn1r189|ENSMUSG00000099611.3|vomeronasal 1 receptor 189
mm39_v1_chr2_+_153780138_153780143	0.00839809610755492	En2	ENSMUST00000109757.8|Bpifb4|ENSMUSG00000074665.12|BPI fold containing family B, member 4	ENSMUST00000154281.3|Bpifb4|ENSMUSG00000074665.12|BPI fold containing family B, member 4
mm39_v1_chr8_+_95807814_95807833	0.008154914623290604	En2	ENSMUST00000034239.9|Katnb1|ENSMUSG00000031787.9|katanin p80 (WD40-containing) subunit B 1
mm39_v1_chr7_+_44240310_44240344	0.008069507159693446	En2	ENSMUST00000107906.6|Kcnc3|ENSMUSG00000062785.15|potassium voltage gated channel, Shaw-related subfamily, member 3
mm39_v1_chr11_+_114741948_114741999	0.007946662984689564	En2	ENSMUST00000133245.2|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C	ENSMUST00000122967.3|Gprc5c|ENSMUSG00000051043.17|G protein-coupled receptor, family C, group 5, member C
mm39_v1_chr8_+_121842902_121842916	0.007796481703206221	En2	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr15_+_100262423_100262454	0.00746898757046976	En2	ENSMUST00000175683.8|Higd1c|ENSMUSG00000093550.8|HIG1 domain family, member 1C	ENSMUST00000177211.2|Higd1c|ENSMUSG00000093550.8|HIG1 domain family, member 1C
mm39_v1_chr9_+_43222104_43222145	0.007435332348052381	En2	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr16_+_3410262_3410262	0.007349067438688613	En2	ENSMUST00000061541.2|Olfr161|ENSMUSG00000051003.3|olfactory receptor 161
mm39_v1_chr3_+_63203516_63203615	0.007329834977211526	En2	ENSMUST00000029400.7|Mme|ENSMUSG00000027820.13|membrane metallo endopeptidase
mm39_v1_chr17_-_36008863_36008894	0.0073273760641924665	En2	ENSMUST00000146472.8|Ddr1|ENSMUSG00000003534.18|discoidin domain receptor family, member 1
mm39_v1_chr8_+_82582953_82583006	0.007179578145363191	En2	ENSMUST00000109851.3|Inpp4b|ENSMUSG00000037940.18|inositol polyphosphate-4-phosphatase, type II
mm39_v1_chr1_+_92499044_92499044	0.007107275266922181	En2	ENSMUST00000214239.2|Olfr1413|ENSMUSG00000058904.4|olfactory receptor 1413
mm39_v1_chr4_+_62501737_62501838	0.006761220994791894	En2	ENSMUST00000098031.10|Rgs3|ENSMUSG00000059810.19|regulator of G-protein signaling 3
mm39_v1_chr17_-_37430949_37430975	0.006667707522895602	En2	ENSMUST00000214994.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92	ENSMUST00000216341.2|Olfr92|ENSMUSG00000096477.3|olfactory receptor 92
mm39_v1_chr7_-_103092357_103092357	0.006571762172077118	En2	ENSMUST00000080660.6|Olfr605|ENSMUSG00000109659.4|olfactory receptor 605
mm39_v1_chr17_+_69746321_69746321	0.006425968248768569	En2	ENSMUST00000169935.2|Akain1|ENSMUSG00000091636.3|A kinase (PRKA) anchor inhibitor 1
mm39_v1_chr1_-_90771638_90771666	0.0063503776561854765	En2	ENSMUST00000130846.9|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3
mm39_v1_chr4_-_63072367_63072410	0.005924111384545245	En2	ENSMUST00000030041.5|Ambp|ENSMUSG00000028356.5|alpha 1 microglobulin/bikunin precursor
mm39_v1_chr10_-_128974829_128974867	0.0057674267639119215	En2	ENSMUST00000203887.3|Olfr770|ENSMUSG00000047868.7|olfactory receptor 770	ENSMUST00000204250.3|Olfr770|ENSMUSG00000047868.7|olfactory receptor 770	ENSMUST00000204712.4|Olfr770|ENSMUSG00000047868.7|olfactory receptor 770
mm39_v1_chr1_-_90771674_90771703	0.005737321683228652	En2	ENSMUST00000097653.11|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3	ENSMUST00000188587.7|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3	ENSMUST00000056925.16|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3	ENSMUST00000187753.2|Col6a3|ENSMUSG00000048126.17|collagen, type VI, alpha 3
mm39_v1_chr11_-_99241924_99241937	0.0056425771887594536	En2	ENSMUST00000017732.3|Krt27|ENSMUSG00000017588.3|keratin 27
mm39_v1_chr2_+_49956441_49956481	0.005240514086583605	En2	ENSMUST00000112712.10|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000128451.8|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6	ENSMUST00000053208.14|Lypd6|ENSMUSG00000050447.16|LY6/PLAUR domain containing 6
mm39_v1_chr12_-_104439589_104439633	0.005148765723414497	En2	ENSMUST00000021513.6|Gsc|ENSMUSG00000021095.6|goosecoid homeobox
mm39_v1_chr12_+_84498196_84498292	0.005097713780587158	En2	ENSMUST00000137170.3|Lin52|ENSMUSG00000085793.3|lin-52 homolog (C. elegans)
mm39_v1_chr10_+_59239466_59239491	0.005015856241324213	En2	ENSMUST00000009790.14|Pla2g12b|ENSMUSG00000009646.14|phospholipase A2, group XIIB
mm39_v1_chrM_+_7779_7927	0.004734485949872667	En2	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm39_v1_chr5_+_81169430_81169440	0.004531416341276825	En2	ENSMUST00000121707.8|Adgrl3|ENSMUSG00000037605.17|adhesion G protein-coupled receptor L3
mm39_v1_chr9_+_37683933_37683933	0.004089441360748362	En2	ENSMUST00000080634.4|Olfr875|ENSMUSG00000058628.5|olfactory receptor 875
mm39_v1_chr11_+_67689094_67689113	0.0035245821757898927	En2	ENSMUST00000168612.8|Dhrs7c|ENSMUSG00000033044.13|dehydrogenase/reductase (SDR family) member 7C
mm39_v1_chr7_-_119494669_119494766	0.0033654998868686815	En2	ENSMUST00000098080.9|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr1_-_92446141_92446141	0.002949208336153893	En2	ENSMUST00000189174.2|Olfr1414|ENSMUSG00000042849.12|olfactory receptor 1414
mm39_v1_chr7_+_63835154_63835207	0.002840031691000376	En2	ENSMUST00000177102.8|Trpm1|ENSMUSG00000030523.19|transient receptor potential cation channel, subfamily M, member 1
mm39_v1_chr1_-_79417732_79417837	0.0028314464545588195	En2	ENSMUST00000185234.2|Scg2|ENSMUSG00000050711.8|secretogranin II	ENSMUST00000049972.6|Scg2|ENSMUSG00000050711.8|secretogranin II
mm39_v1_chr2_-_87322762_87322762	0.0027070785126591	En2	ENSMUST00000026957.4|Pramel7|ENSMUSG00000025839.4|PRAME like 7
mm39_v1_chr17_-_84154196_84154241	0.0026202923439949386	En2	ENSMUST00000234214.2|Haao|ENSMUSG00000000673.10|3-hydroxyanthranilate 3,4-dioxygenase
mm39_v1_chr8_-_3674993_3675015	0.0022523342438063414	En2	ENSMUST00000142431.8|Pcp2|ENSMUSG00000004630.19|Purkinje cell protein 2 (L7)
mm39_v1_chr4_-_3872105_3872105	0.0021031054145224776	En2	ENSMUST00000105158.2|Mos|ENSMUSG00000078365.6|Moloney sarcoma oncogene
mm39_v1_chr2_+_177760959_177760977	0.0019656639150575123	En2	ENSMUST00000108916.8|Phactr3|ENSMUSG00000027525.19|phosphatase and actin regulator 3
mm39_v1_chr13_-_114595122_114595272	0.0014877023840812748	En2	ENSMUST00000231252.2|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr11_+_49360881_49360881	0.0014847393152874976	En2	ENSMUST00000071905.5|Olfr1386|ENSMUSG00000108167.3|olfactory receptor 1386
mm39_v1_chr6_+_92793440_92793465	0.0013136150814218705	En2	ENSMUST00000057977.4|A730049H05Rik|ENSMUSG00000048636.8|RIKEN cDNA A730049H05 gene
mm39_v1_chr14_+_53698556_53698556	0.0013127924971607073	En2	ENSMUST00000181728.3|Trav7-4|ENSMUSG00000094766.4|T cell receptor alpha variable 7-4
mm39_v1_chr7_+_102203493_102203493	0.0011469753483468485	En2	ENSMUST00000098227.2|Olfr549|ENSMUSG00000073977.3|olfactory receptor 549
mm39_v1_chr17_-_37409147_37409170	0.0009215408138551608	En2	ENSMUST00000216376.2|Olfr91|ENSMUSG00000095377.3|olfactory receptor 91	ENSMUST00000217372.2|Olfr91|ENSMUSG00000095377.3|olfactory receptor 91
mm39_v1_chr18_-_43925932_43925949	0.0008342114716274955	En2	ENSMUST00000237926.2|Gm94|ENSMUSG00000071858.5|predicted gene 94	ENSMUST00000096570.4|Gm94|ENSMUSG00000071858.5|predicted gene 94
mm39_v1_chr11_-_99213769_99213783	0.0008261654851111985	En2	ENSMUST00000038004.3|Krt25|ENSMUSG00000035831.3|keratin 25
mm39_v1_chr3_-_54962458_54962476	0.0006887676610066368	En2	ENSMUST00000199352.2|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000198320.5|Ccna1|ENSMUSG00000027793.7|cyclin A1	ENSMUST00000029368.7|Ccna1|ENSMUSG00000027793.7|cyclin A1
mm39_v1_chr10_+_73657753_73657810	0.0005864481225026325	En2	ENSMUST00000134009.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000177420.7|Pcdh15|ENSMUSG00000052613.17|protocadherin 15	ENSMUST00000125006.9|Pcdh15|ENSMUSG00000052613.17|protocadherin 15
mm39_v1_chr6_+_8948608_8948619	0.0005695705419453294	En2	ENSMUST00000160300.2|Nxph1|ENSMUSG00000046178.4|neurexophilin 1
