mm39_v1_chr6_-_38853097_38853167	0.4605529899715923	GCUACAU	ENSMUST00000161779.8|Hipk2|ENSMUSG00000061436.16|homeodomain interacting protein kinase 2
mm39_v1_chr13_+_45543208_45543226	0.31289075191871524	GCUACAU	ENSMUST00000038275.11|Mylip|ENSMUSG00000038175.11|myosin regulatory light chain interacting protein
mm39_v1_chr2_-_5719302_5719349	0.27908662334291745	GCUACAU	ENSMUST00000044009.14|Camk1d|ENSMUSG00000039145.17|calcium/calmodulin-dependent protein kinase ID
mm39_v1_chrX_+_137815171_137815187	0.27280116082713063	GCUACAU	ENSMUST00000064937.14|Nrk|ENSMUSG00000052854.16|Nik related kinase	ENSMUST00000113052.8|Nrk|ENSMUSG00000052854.16|Nik related kinase
mm39_v1_chr8_+_109441276_109441276	0.2708233770811794	GCUACAU	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chrX_+_71006577_71006619	0.23127017247967305	GCUACAU	ENSMUST00000048790.7|Prrg3|ENSMUSG00000033361.14|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm39_v1_chr6_-_116170389_116170462	0.23021796403303435	GCUACAU	ENSMUST00000088896.10|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr3_+_131791042_131791060	0.22476525489217078	GCUACAU	ENSMUST00000029665.7|Dkk2|ENSMUSG00000028031.7|dickkopf WNT signaling pathway inhibitor 2
mm39_v1_chr14_+_26359191_26359229	0.22017115440948629	GCUACAU	ENSMUST00000022429.9|Arf4|ENSMUSG00000021877.13|ADP-ribosylation factor 4
mm39_v1_chr4_-_56990306_56990394	0.2130036469392569	GCUACAU	ENSMUST00000053681.6|Frrs1l|ENSMUSG00000045589.8|ferric-chelate reductase 1 like
mm39_v1_chr11_+_77985486_77985504	0.2064209073764172	GCUACAU	ENSMUST00000073705.12|Fam222b|ENSMUSG00000037750.17|family with sequence similarity 222, member B
mm39_v1_chr16_+_11140740_11140775	0.1953809397230121	GCUACAU	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr15_-_103248512_103248527	0.19314274753191588	GCUACAU	ENSMUST00000168828.3|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr8_-_32408864_32408913	0.19025434900322893	GCUACAU	ENSMUST00000073884.7|Nrg1|ENSMUSG00000062991.10|neuregulin 1	ENSMUST00000238812.2|Nrg1|ENSMUSG00000062991.10|neuregulin 1
mm39_v1_chr12_-_91556761_91556783	0.1881995388181051	GCUACAU	ENSMUST00000021345.14|Gtf2a1|ENSMUSG00000020962.15|general transcription factor II A, 1
mm39_v1_chr13_-_54835508_54835623	0.18582448591611164	GCUACAU	ENSMUST00000177950.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44	ENSMUST00000146931.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44
mm39_v1_chr10_+_79984097_79984115	0.17703841593450226	GCUACAU	ENSMUST00000099492.10|Midn|ENSMUSG00000035621.14|midnolin	ENSMUST00000042057.12|Midn|ENSMUSG00000035621.14|midnolin
mm39_v1_chr8_+_47192767_47192829	0.17698729268717048	GCUACAU	ENSMUST00000034041.9|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000208507.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2	ENSMUST00000207105.2|Irf2|ENSMUSG00000031627.10|interferon regulatory factor 2
mm39_v1_chr14_-_21102487_21102592	0.17507315759446243	GCUACAU	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr15_-_50753061_50753118	0.16012621258068752	GCUACAU	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr6_+_86826470_86826577	0.1593255713250261	GCUACAU	ENSMUST00000089519.13|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1	ENSMUST00000204414.3|Aak1|ENSMUSG00000057230.15|AP2 associated kinase 1
mm39_v1_chr11_-_103158190_103158298	0.15636847672092055	GCUACAU	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr6_-_142910094_142910178	0.15529838242958935	GCUACAU	ENSMUST00000032421.4|St8sia1|ENSMUSG00000030283.8|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
mm39_v1_chr17_-_43187280_43187368	0.14675653660849644	GCUACAU	ENSMUST00000024709.9|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein	ENSMUST00000233476.2|Cd2ap|ENSMUSG00000061665.8|CD2-associated protein
mm39_v1_chr10_-_5872386_5872405	0.14385391943697176	GCUACAU	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr12_-_46865709_46865720	0.13677052388394006	GCUACAU	ENSMUST00000021438.8|Nova1|ENSMUSG00000021047.8|NOVA alternative splicing regulator 1
mm39_v1_chr4_-_70453140_70453224	0.13453129923595195	GCUACAU	ENSMUST00000107359.9|Megf9|ENSMUSG00000039270.10|multiple EGF-like-domains 9
mm39_v1_chr12_+_4967376_4967438	0.13310268276748277	GCUACAU	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr1_-_155912159_155912200	0.13221453081692025	GCUACAU	ENSMUST00000097527.10|Tor1aip1|ENSMUSG00000026466.17|torsin A interacting protein 1
mm39_v1_chr1_+_88998115_88998147	0.1211604614323145	GCUACAU	ENSMUST00000066279.11|Sh3bp4|ENSMUSG00000036206.13|SH3-domain binding protein 4
mm39_v1_chr18_-_16942289_16942384	0.12097232455298015	GCUACAU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr9_+_61279640_61279665	0.11693022749335705	GCUACAU	ENSMUST00000178113.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3	ENSMUST00000159386.8|Tle3|ENSMUSG00000032280.17|transducin-like enhancer of split 3
mm39_v1_chr11_+_117545618_117545655	0.11641753487139284	GCUACAU	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr17_-_45047521_45047561	0.11283974707252334	GCUACAU	ENSMUST00000113572.9|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr18_-_73836810_73836877	0.10906946180968673	GCUACAU	ENSMUST00000025393.14|Smad4|ENSMUSG00000024515.14|SMAD family member 4
mm39_v1_chr11_+_45742782_45742846	0.10854227638336497	GCUACAU	ENSMUST00000109261.11|Clint1|ENSMUSG00000006169.21|clathrin interactor 1	ENSMUST00000109260.3|Clint1|ENSMUSG00000006169.21|clathrin interactor 1
mm39_v1_chrX_-_107877909_107877987	0.1064809422127694	GCUACAU	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr1_-_134006847_134006862	0.10054790465575254	GCUACAU	ENSMUST00000020692.7|Btg2|ENSMUSG00000020423.7|BTG anti-proliferation factor 2
mm39_v1_chr11_+_95603494_95603529	0.09262966751839592	GCUACAU	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr10_-_10958031_10958116	0.09244433408851117	GCUACAU	ENSMUST00000105561.9|Grm1|ENSMUSG00000019828.14|glutamate receptor, metabotropic 1	ENSMUST00000044306.13|Grm1|ENSMUSG00000019828.14|glutamate receptor, metabotropic 1
mm39_v1_chr2_-_63928339_63928367	0.089061836225	GCUACAU	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr11_+_32297803_32297865	0.0885912193047943	GCUACAU	ENSMUST00000038753.6|Sh3pxd2b|ENSMUSG00000040711.9|SH3 and PX domains 2B	ENSMUST00000239041.2|Sh3pxd2b|ENSMUSG00000040711.9|SH3 and PX domains 2B
mm39_v1_chr14_+_54598283_54598308	0.08752501968522158	GCUACAU	ENSMUST00000000985.7|Oxa1l|ENSMUSG00000000959.8|oxidase assembly 1-like
mm39_v1_chr9_+_74860335_74860374	0.08451419457887505	GCUACAU	ENSMUST00000170846.8|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr14_-_4198510_4198572	0.08399202827228851	GCUACAU	ENSMUST00000133460.2|Nkiras1|ENSMUSG00000021772.16|NFKB inhibitor interacting Ras-like protein 1	ENSMUST00000132374.9|Nkiras1|ENSMUSG00000021772.16|NFKB inhibitor interacting Ras-like protein 1
mm39_v1_chr7_-_127423641_127423751	0.08203590476984718	GCUACAU	ENSMUST00000106267.5|Stx1b|ENSMUSG00000030806.7|syntaxin 1B
mm39_v1_chr4_-_59549314_59549364	0.08175555410886866	GCUACAU	ENSMUST00000148331.9|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3	ENSMUST00000030076.12|Ptbp3|ENSMUSG00000028382.16|polypyrimidine tract binding protein 3
mm39_v1_chr2_+_102488985_102489014	0.08034147644965402	GCUACAU	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr17_+_29768757_29768773	0.0794645153653883	GCUACAU	ENSMUST00000048677.9|Tbc1d22b|ENSMUSG00000042203.9|TBC1 domain family, member 22B	ENSMUST00000150388.3|Gm28052|ENSMUSG00000099329.3|predicted gene, 28052
mm39_v1_chr3_+_101284391_101284421	0.0792232231064254	GCUACAU	ENSMUST00000043983.11|Igsf3|ENSMUSG00000042035.12|immunoglobulin superfamily, member 3
mm39_v1_chr10_-_116984386_116984452	0.07654508286551981	GCUACAU	ENSMUST00000020381.5|Frs2|ENSMUSG00000020170.5|fibroblast growth factor receptor substrate 2
mm39_v1_chr11_+_77873535_77873649	0.07603070013456291	GCUACAU	ENSMUST00000108360.8|Phf12|ENSMUSG00000037791.16|PHD finger protein 12	ENSMUST00000049167.14|Phf12|ENSMUSG00000037791.16|PHD finger protein 12
mm39_v1_chr2_-_118380149_118380168	0.0746160830473663	GCUACAU	ENSMUST00000090219.13|Bmf|ENSMUSG00000040093.17|BCL2 modifying factor
mm39_v1_chr6_+_134897364_134897394	0.07316164239091899	GCUACAU	ENSMUST00000067327.11|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B	ENSMUST00000003115.9|Cdkn1b|ENSMUSG00000003031.15|cyclin-dependent kinase inhibitor 1B
mm39_v1_chr4_+_135899678_135899738	0.0708667695382507	GCUACAU	ENSMUST00000061721.6|E2f2|ENSMUSG00000018983.10|E2F transcription factor 2
mm39_v1_chr8_-_81466126_81466126	0.06715648957948896	GCUACAU	ENSMUST00000043359.9|Smarca5|ENSMUSG00000031715.15|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
mm39_v1_chr3_-_119576911_119577037	0.06711951671503771	GCUACAU	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr9_+_72439496_72439553	0.06661824483182316	GCUACAU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr4_+_83443777_83443851	0.05581524654094373	GCUACAU	ENSMUST00000053414.13|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000231339.2|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171	ENSMUST00000126429.8|Ccdc171|ENSMUSG00000052407.18|coiled-coil domain containing 171
mm39_v1_chr2_-_34262012_34262056	0.05495417589852028	GCUACAU	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr1_+_133058881_133058992	0.05471617849008922	GCUACAU	ENSMUST00000052529.4|Ppp1r15b|ENSMUSG00000046062.6|protein phosphatase 1, regulatory subunit 15B
mm39_v1_chr3_+_88439616_88439703	0.054430907223018625	GCUACAU	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr17_+_24633614_24633671	0.053874760449616324	GCUACAU	ENSMUST00000115371.9|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000088512.13|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1	ENSMUST00000163717.2|Rnps1|ENSMUSG00000034681.18|RNA binding protein with serine rich domain 1
mm39_v1_chr17_-_47922374_47922471	0.053054399303101005	GCUACAU	ENSMUST00000024783.9|Bysl|ENSMUSG00000023988.9|bystin-like
mm39_v1_chr2_+_33106062_33106096	0.051248375067372766	GCUACAU	ENSMUST00000004208.7|Angptl2|ENSMUSG00000004105.9|angiopoietin-like 2
mm39_v1_chr12_+_84161095_84161165	0.05087068586565619	GCUACAU	ENSMUST00000123491.8|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000046340.9|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1	ENSMUST00000136159.2|Dnal1|ENSMUSG00000042523.13|dynein, axonemal, light chain 1
mm39_v1_chr1_+_134343107_134343146	0.05001785380397352	GCUACAU	ENSMUST00000027727.15|Adipor1|ENSMUSG00000026457.15|adiponectin receptor 1
mm39_v1_chr5_+_86952072_86952135	0.0496063136953168	GCUACAU	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chr5_-_138153956_138154006	0.04878195455822891	GCUACAU	ENSMUST00000132318.2|Zfp113|ENSMUSG00000037007.18|zinc finger protein 113	ENSMUST00000049393.15|Zfp113|ENSMUSG00000037007.18|zinc finger protein 113
mm39_v1_chr6_+_141194886_141194995	0.0475576485647286	GCUACAU	ENSMUST00000043259.10|Pde3a|ENSMUSG00000041741.11|phosphodiesterase 3A, cGMP inhibited
mm39_v1_chr2_-_104324745_104324809	0.04676954177344764	GCUACAU	ENSMUST00000028600.14|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr3_-_103698853_103698879	0.04624242268407835	GCUACAU	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr2_-_45003270_45003296	0.044952492188897956	GCUACAU	ENSMUST00000202935.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000068415.11|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000127520.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr4_+_148888877_148888897	0.0446835398364514	GCUACAU	ENSMUST00000094464.10|Casz1|ENSMUSG00000028977.18|castor zinc finger 1	ENSMUST00000122222.8|Casz1|ENSMUSG00000028977.18|castor zinc finger 1
mm39_v1_chr2_+_127967951_127967976	0.04451086454552358	GCUACAU	ENSMUST00000089634.12|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000019281.14|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000110341.9|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103211.8|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)	ENSMUST00000103210.2|Bcl2l11|ENSMUSG00000027381.17|BCL2-like 11 (apoptosis facilitator)
mm39_v1_chr9_-_107512566_107512584	0.04404240576528538	GCUACAU	ENSMUST00000055704.12|Gnai2|ENSMUSG00000032562.14|guanine nucleotide binding protein (G protein), alpha inhibiting 2
mm39_v1_chr6_-_97156032_97156120	0.04364678932227777	GCUACAU	ENSMUST00000095664.6|Tmf1|ENSMUSG00000030059.16|TATA element modulatory factor 1
mm39_v1_chr8_+_4543021_4543199	0.042262812792381935	GCUACAU	ENSMUST00000176042.2|Cers4|ENSMUSG00000008206.17|ceramide synthase 4	ENSMUST00000008350.16|Cers4|ENSMUSG00000008206.17|ceramide synthase 4
mm39_v1_chr5_+_106024398_106024451	0.04131082794433397	GCUACAU	ENSMUST00000150440.8|Zfp326|ENSMUSG00000029290.13|zinc finger protein 326	ENSMUST00000031227.11|Zfp326|ENSMUSG00000029290.13|zinc finger protein 326
mm39_v1_chr5_-_121147593_121147639	0.04028919351805162	GCUACAU	ENSMUST00000079204.9|Rph3a|ENSMUSG00000029608.11|rabphilin 3A
mm39_v1_chr7_+_125871761_125871791	0.036912234545413786	GCUACAU	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr6_-_99243455_99243501	0.03650180817844131	GCUACAU	ENSMUST00000113326.9|Foxp1|ENSMUSG00000030067.18|forkhead box P1
mm39_v1_chr6_+_38410848_38410901	0.036452493006126255	GCUACAU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr10_-_128481833_128481881	0.03599397720129808	GCUACAU	ENSMUST00000133342.10|Ikzf4|ENSMUSG00000002578.19|IKAROS family zinc finger 4
mm39_v1_chr3_+_30847024_30847024	0.0352784089473446	GCUACAU	ENSMUST00000029256.9|Sec62|ENSMUSG00000027706.9|SEC62 homolog (S. cerevisiae)
mm39_v1_chr4_+_128548479_128548531	0.03509777792337143	GCUACAU	ENSMUST00000030588.13|Phc2|ENSMUSG00000028796.18|polyhomeotic 2	ENSMUST00000136377.8|Phc2|ENSMUSG00000028796.18|polyhomeotic 2
mm39_v1_chr14_+_27150750_27150830	0.034591820650543864	GCUACAU	ENSMUST00000022450.6|Tasor|ENSMUSG00000040651.10|transcription activation suppressor
mm39_v1_chr18_-_35348049_35348092	0.033751320638330105	GCUACAU	ENSMUST00000091636.5|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2	ENSMUST00000236680.2|Lrrtm2|ENSMUSG00000071862.4|leucine rich repeat transmembrane neuronal 2
mm39_v1_chr11_+_77576981_77577005	0.033557375927427635	GCUACAU	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr2_-_59955995_59956119	0.0327840602214448	GCUACAU	ENSMUST00000112550.8|Baz2b|ENSMUSG00000026987.17|bromodomain adjacent to zinc finger domain, 2B
mm39_v1_chr5_+_150183201_150183232	0.03270670410425264	GCUACAU	ENSMUST00000087204.9|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein
mm39_v1_chr1_-_64160557_64160650	0.032659539089693206	GCUACAU	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr18_+_36693646_36693673	0.031657386189479435	GCUACAU	ENSMUST00000155329.9|Ankhd1|ENSMUSG00000024483.20|ankyrin repeat and KH domain containing 1
mm39_v1_chr5_+_89034666_89034684	0.031262857619011486	GCUACAU	ENSMUST00000148750.8|Slc4a4|ENSMUSG00000060961.17|solute carrier family 4 (anion exchanger), member 4
mm39_v1_chr4_+_114263914_114263930	0.031200866640179927	GCUACAU	ENSMUST00000094894.4|Trabd2b|ENSMUSG00000070867.5|TraB domain containing 2B
mm39_v1_chr14_+_63673843_63673974	0.029748797585550487	GCUACAU	ENSMUST00000121288.2|Fam167a|ENSMUSG00000035095.12|family with sequence similarity 167, member A
mm39_v1_chr5_-_25703700_25703841	0.028233697422915583	GCUACAU	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr13_-_49024583_49024642	0.02804153323171251	GCUACAU	ENSMUST00000035540.9|Phf2|ENSMUSG00000038025.9|PHD finger protein 2
mm39_v1_chrX_+_67722147_67722159	0.027977120165122882	GCUACAU	ENSMUST00000088546.12|Fmr1|ENSMUSG00000000838.18|FMRP translational regulator 1
mm39_v1_chr11_+_87959067_87959115	0.027442943710756704	GCUACAU	ENSMUST00000018521.11|Vezf1|ENSMUSG00000018377.11|vascular endothelial zinc finger 1
mm39_v1_chr17_+_50816296_50816431	0.027097774708885452	GCUACAU	ENSMUST00000043938.8|Plcl2|ENSMUSG00000038910.8|phospholipase C-like 2
mm39_v1_chr18_-_77801624_77801673	0.026785976669566853	GCUACAU	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr18_-_63520195_63520260	0.026055611800115352	GCUACAU	ENSMUST00000047480.13|Piezo2|ENSMUSG00000041482.18|piezo-type mechanosensitive ion channel component 2
mm39_v1_chr7_-_132415528_132415635	0.024558408329769753	GCUACAU	ENSMUST00000097998.9|Fam53b|ENSMUSG00000030956.16|family with sequence similarity 53, member B
mm39_v1_chr1_-_151304191_151304225	0.024092011336212135	GCUACAU	ENSMUST00000064771.12|Swt1|ENSMUSG00000052748.15|SWT1 RNA endoribonuclease homolog (S. cerevisiae)
mm39_v1_chr11_-_78588194_78588205	0.024007854378265064	GCUACAU	ENSMUST00000142739.8|Nlk|ENSMUSG00000017376.16|nemo like kinase
mm39_v1_chr3_-_79474989_79475000	0.02383869264216091	GCUACAU	ENSMUST00000076136.7|Fnip2|ENSMUSG00000061175.13|folliculin interacting protein 2
mm39_v1_chr10_+_56253418_56253434	0.02369223768704504	GCUACAU	ENSMUST00000068581.9|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1	ENSMUST00000217789.2|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1
mm39_v1_chr2_+_124452493_124452534	0.023498869970795196	GCUACAU	ENSMUST00000103239.10|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	ENSMUST00000103240.9|Sema6d|ENSMUSG00000027200.18|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm39_v1_chr15_+_25622611_25622644	0.023139112622837698	GCUACAU	ENSMUST00000110457.8|Myo10|ENSMUSG00000022272.18|myosin X	ENSMUST00000137601.8|Myo10|ENSMUSG00000022272.18|myosin X
mm39_v1_chr6_-_124865155_124865184	0.02297821828377396	GCUACAU	ENSMUST00000024044.7|Cd4|ENSMUSG00000023274.15|CD4 antigen
mm39_v1_chr11_-_46057224_46057335	0.022914279535361418	GCUACAU	ENSMUST00000020679.3|Nipal4|ENSMUSG00000020411.3|NIPA-like domain containing 4
mm39_v1_chr10_-_33500583_33500765	0.02267472191723977	GCUACAU	ENSMUST00000161692.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000160299.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000019920.13|Clvs2|ENSMUSG00000019785.15|clavesin 2
mm39_v1_chr9_+_117869543_117869567	0.022540110569535046	GCUACAU	ENSMUST00000044454.12|Azi2|ENSMUSG00000039285.13|5-azacytidine induced gene 2
mm39_v1_chr7_-_144024451_144024512	0.022299447086868224	GCUACAU	ENSMUST00000033407.13|Cttn|ENSMUSG00000031078.16|cortactin
mm39_v1_chr8_+_12445287_12445295	0.02022251740297074	GCUACAU	ENSMUST00000180353.2|Sox1|ENSMUSG00000096014.2|SRY (sex determining region Y)-box 1
mm39_v1_chr13_+_81031512_81031543	0.0201316754709624	GCUACAU	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr11_-_104333059_104333117	0.01899146240412371	GCUACAU	ENSMUST00000106977.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1	ENSMUST00000106972.8|Kansl1|ENSMUSG00000018412.17|KAT8 regulatory NSL complex subunit 1
mm39_v1_chr4_+_62883796_62883854	0.018513336475264913	GCUACAU	ENSMUST00000030043.13|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000107415.8|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618	ENSMUST00000064814.6|Zfp618|ENSMUSG00000028358.16|zinc finger protein 618
mm39_v1_chr18_+_35731658_35731729	0.01686034082351159	GCUACAU	ENSMUST00000041314.17|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236666.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236020.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000235400.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr19_+_41471067_41471128	0.016485602239821876	GCUACAU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr9_+_100956734_100956815	0.01647937063522299	GCUACAU	ENSMUST00000085177.5|Msl2|ENSMUSG00000066415.5|MSL complex subunit 2
mm39_v1_chr3_+_28835425_28835493	0.01618487384965689	GCUACAU	ENSMUST00000060500.9|Eif5a2|ENSMUSG00000050192.9|eukaryotic translation initiation factor 5A2
mm39_v1_chr3_+_94744844_94744884	0.015885280292660134	GCUACAU	ENSMUST00000107270.9|Pogz|ENSMUSG00000038902.15|pogo transposable element with ZNF domain
mm39_v1_chr5_-_135963408_135963467	0.015277277951865948	GCUACAU	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr13_-_49121461_49121603	0.015063649657365372	GCUACAU	ENSMUST00000060805.7|Fam120a|ENSMUSG00000038014.8|family with sequence similarity 120, member A
mm39_v1_chr14_-_65187287_65187335	0.014170665756946605	GCUACAU	ENSMUST00000067843.10|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176489.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175905.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000022544.14|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000175744.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1	ENSMUST00000176128.8|Hmbox1|ENSMUSG00000021972.15|homeobox containing 1
mm39_v1_chr10_+_40225272_40225385	0.013054942487383085	GCUACAU	ENSMUST00000044672.11|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19	ENSMUST00000095743.4|Cdk19|ENSMUSG00000038481.14|cyclin-dependent kinase 19
mm39_v1_chr5_-_51711237_51711264	0.012523796623005143	GCUACAU	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr4_-_133480922_133480977	0.012255821883007183	GCUACAU	ENSMUST00000145664.9|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)	ENSMUST00000105897.10|Arid1a|ENSMUSG00000007880.17|AT rich interactive domain 1A (SWI-like)
mm39_v1_chr2_-_142743438_142743530	0.011382881836657428	GCUACAU	ENSMUST00000230763.2|Kif16b|ENSMUSG00000038844.11|kinesin family member 16B	ENSMUST00000043589.8|Kif16b|ENSMUSG00000038844.11|kinesin family member 16B
mm39_v1_chr1_+_167516771_167516806	0.011313051767868922	GCUACAU	ENSMUST00000111377.8|Lmx1a|ENSMUSG00000026686.15|LIM homeobox transcription factor 1 alpha
mm39_v1_chr16_-_97723753_97723833	0.011106586540805355	GCUACAU	ENSMUST00000170757.3|C2cd2|ENSMUSG00000045975.9|C2 calcium-dependent domain containing 2
mm39_v1_chr7_+_128346655_128346745	0.010973114733941207	GCUACAU	ENSMUST00000042942.10|Sec23ip|ENSMUSG00000055319.9|Sec23 interacting protein
mm39_v1_chr19_+_55730696_55730774	0.01042741035555118	GCUACAU	ENSMUST00000153888.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000127233.9|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000061496.17|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111656.8|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box	ENSMUST00000111657.11|Tcf7l2|ENSMUSG00000024985.21|transcription factor 7 like 2, T cell specific, HMG box
mm39_v1_chr7_-_73191484_73191503	0.00913785619999486	GCUACAU	ENSMUST00000197642.2|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000026895.14|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2	ENSMUST00000169922.9|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr3_+_95341698_95341739	0.00796153170204025	GCUACAU	ENSMUST00000102749.11|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000090804.12|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000107161.8|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000107160.8|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator	ENSMUST00000015666.17|Arnt|ENSMUSG00000015522.19|aryl hydrocarbon receptor nuclear translocator
mm39_v1_chr6_-_39702381_39702413	0.007891491032818916	GCUACAU	ENSMUST00000002487.15|Braf|ENSMUSG00000002413.16|Braf transforming gene
mm39_v1_chr19_+_25587896_25587919	0.0073993473906153245	GCUACAU	ENSMUST00000048935.6|Dmrt3|ENSMUSG00000042372.6|doublesex and mab-3 related transcription factor 3
mm39_v1_chr18_-_58343423_58343559	0.007223166050402182	GCUACAU	ENSMUST00000025497.8|Fbn2|ENSMUSG00000024598.10|fibrillin 2
mm39_v1_chr14_+_111912529_111912556	0.0061803236159612895	GCUACAU	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr1_-_184731672_184731767	0.004357984867177087	GCUACAU	ENSMUST00000192657.2|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1	ENSMUST00000027929.10|Mark1|ENSMUSG00000026620.12|MAP/microtubule affinity regulating kinase 1
mm39_v1_chr2_+_6327431_6327478	0.004213433041316878	GCUACAU	ENSMUST00000114937.8|Usp6nl|ENSMUSG00000039046.16|USP6 N-terminal like
mm39_v1_chr4_-_151946219_151946333	0.002953464964632573	GCUACAU	ENSMUST00000097774.9|Camta1|ENSMUSG00000014592.22|calmodulin binding transcription activator 1
mm39_v1_chr11_-_116743898_116743925	0.0029145958608665598	GCUACAU	ENSMUST00000190993.7|Srsf2|ENSMUSG00000034120.19|serine and arginine-rich splicing factor 2	ENSMUST00000092404.13|Srsf2|ENSMUSG00000034120.19|serine and arginine-rich splicing factor 2
mm39_v1_chr11_+_108811168_108811184	0.0026864385408516497	GCUACAU	ENSMUST00000052915.14|Axin2|ENSMUSG00000000142.16|axin 2
mm39_v1_chr13_+_46571910_46571986	0.002623037944598555	GCUACAU	ENSMUST00000037923.5|Rbm24|ENSMUSG00000038132.7|RNA binding motif protein 24
mm39_v1_chr10_+_86136236_86136467	0.002478678641497288	GCUACAU	ENSMUST00000020234.14|Timp3|ENSMUSG00000020044.14|tissue inhibitor of metalloproteinase 3
mm39_v1_chr8_-_111532495_111532585	0.0023361427066119623	GCUACAU	ENSMUST00000150680.2|Il34|ENSMUSG00000031750.16|interleukin 34	ENSMUST00000076846.11|Il34|ENSMUSG00000031750.16|interleukin 34
mm39_v1_chr1_+_153528689_153528771	0.002298715768540385	GCUACAU	ENSMUST00000041776.12|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr3_+_137770813_137770839	0.0021560587519263885	GCUACAU	ENSMUST00000163080.3|1110002E22Rik|ENSMUSG00000090066.3|RIKEN cDNA 1110002E22 gene
mm39_v1_chr2_-_25471703_25471770	0.0020386269987431875	GCUACAU	ENSMUST00000114217.3|Ajm1|ENSMUSG00000029419.9|apical junction component 1	ENSMUST00000191602.2|Ajm1|ENSMUSG00000029419.9|apical junction component 1
mm39_v1_chr13_-_54914366_54914408	0.0019418206423399522	GCUACAU	ENSMUST00000036825.14|Sncb|ENSMUSG00000034891.14|synuclein, beta
mm39_v1_chr14_-_124914516_124914539	0.0014984679557800296	GCUACAU	ENSMUST00000095529.10|Fgf14|ENSMUSG00000025551.14|fibroblast growth factor 14
mm39_v1_chr4_+_49059255_49059331	0.0011804304299171222	GCUACAU	ENSMUST00000076670.3|Plppr1|ENSMUSG00000063446.5|phospholipid phosphatase related 1
mm39_v1_chr11_-_42073737_42073762	0.001065742853924372	GCUACAU	ENSMUST00000206085.2|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000020707.12|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000132971.3|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm39_v1_chr11_-_55227388_55227416	0.0008667575202265524	GCUACAU	ENSMUST00000068853.13|Fat2|ENSMUSG00000055333.15|FAT atypical cadherin 2
mm39_v1_chr15_+_92294762_92294849	0.0008386636601294555	GCUACAU	ENSMUST00000169942.10|Pdzrn4|ENSMUSG00000036218.17|PDZ domain containing RING finger 4
mm39_v1_chr6_+_14901343_14901363	0.0006807481368265252	GCUACAU	ENSMUST00000115477.8|Foxp2|ENSMUSG00000029563.17|forkhead box P2
mm39_v1_chr16_+_13804461_13804538	0.0005319652643031694	GCUACAU	ENSMUST00000056521.12|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1	ENSMUST00000118412.8|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1	ENSMUST00000131608.2|Bmerb1|ENSMUSG00000044117.13|bMERB domain containing 1
mm39_v1_chr5_-_103247920_103247954	0.0004707479632062125	GCUACAU	ENSMUST00000112848.8|Mapk10|ENSMUSG00000046709.19|mitogen-activated protein kinase 10
mm39_v1_chr9_-_107486381_107486446	0.00010884561565445985	GCUACAU	ENSMUST00000102531.7|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000102530.8|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000195057.2|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	ENSMUST00000102532.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
