mm39_v1_chr3_+_121220146_121220188	0.2228767653510638	GGAAGAC	ENSMUST00000029773.13|Cnn3|ENSMUSG00000053931.12|calponin 3, acidic
mm39_v1_chr14_-_98406977_98407031	0.19501028337585866	GGAAGAC	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr3_+_41510160_41510195	0.19035822876184172	GGAAGAC	ENSMUST00000026865.15|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000194181.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1	ENSMUST00000195846.6|Jade1|ENSMUSG00000025764.15|jade family PHD finger 1
mm39_v1_chr13_+_55740948_55740990	0.16046106161327922	GGAAGAC	ENSMUST00000109905.5|Tmed9|ENSMUSG00000058569.9|transmembrane p24 trafficking protein 9
mm39_v1_chr2_-_65955338_65955486	0.15527526367412442	GGAAGAC	ENSMUST00000028378.4|Galnt3|ENSMUSG00000026994.10|polypeptide N-acetylgalactosaminyltransferase 3
mm39_v1_chr11_-_102588536_102588608	0.15204034050966492	GGAAGAC	ENSMUST00000164506.3|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43	ENSMUST00000092569.13|Ccdc43|ENSMUSG00000020925.17|coiled-coil domain containing 43
mm39_v1_chr13_-_46118433_46118477	0.14755267847181475	GGAAGAC	ENSMUST00000167708.4|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000091628.11|Atxn1|ENSMUSG00000046876.17|ataxin 1	ENSMUST00000180110.9|Atxn1|ENSMUSG00000046876.17|ataxin 1
mm39_v1_chr16_+_32427738_32427763	0.1253549069630952	GGAAGAC	ENSMUST00000023486.15|Tfrc|ENSMUSG00000022797.17|transferrin receptor
mm39_v1_chr11_+_52122836_52122873	0.12141705268137983	GGAAGAC	ENSMUST00000037324.12|Skp1|ENSMUSG00000036309.15|S-phase kinase-associated protein 1	ENSMUST00000166537.8|Skp1|ENSMUSG00000036309.15|S-phase kinase-associated protein 1
mm39_v1_chr10_+_76367427_76367492	0.1202992603575347	GGAAGAC	ENSMUST00000048678.7|Lss|ENSMUSG00000033105.13|lanosterol synthase
mm39_v1_chr3_-_58433313_58433318	0.11099584749335412	GGAAGAC	ENSMUST00000029385.9|Serp1|ENSMUSG00000027808.9|stress-associated endoplasmic reticulum protein 1
mm39_v1_chr6_+_85408953_85408991	0.10521087542503448	GGAAGAC	ENSMUST00000045693.8|Smyd5|ENSMUSG00000033706.14|SET and MYND domain containing 5
mm39_v1_chr11_+_52251687_52251736	0.10336930766216113	GGAAGAC	ENSMUST00000102758.8|Vdac1|ENSMUSG00000020402.12|voltage-dependent anion channel 1
mm39_v1_chr6_-_115652831_115652925	0.10159575749401173	GGAAGAC	ENSMUST00000112949.8|Raf1|ENSMUSG00000000441.18|v-raf-leukemia viral oncogene 1
mm39_v1_chr18_+_69478790_69478882	0.09657036796807118	GGAAGAC	ENSMUST00000202116.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114982.8|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000078486.13|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000202772.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201288.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr12_-_26465253_26465303	0.09429355391549132	GGAAGAC	ENSMUST00000020971.14|Rnf144a|ENSMUSG00000020642.14|ring finger protein 144A
mm39_v1_chr8_-_22888604_22888630	0.08787108709088001	GGAAGAC	ENSMUST00000033871.8|Slc25a15|ENSMUSG00000031482.10|solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15
mm39_v1_chr18_+_36926929_36926992	0.08742955703138705	GGAAGAC	ENSMUST00000001419.10|Zmat2|ENSMUSG00000001383.10|zinc finger, matrin type 2
mm39_v1_chr12_+_59060162_59060184	0.0852964404619682	GGAAGAC	ENSMUST00000021379.8|Gemin2|ENSMUSG00000060121.16|gem nuclear organelle associated protein 2
mm39_v1_chr7_-_113716996_113717023	0.08383719027884076	GGAAGAC	ENSMUST00000069449.7|Rras2|ENSMUSG00000055723.7|related RAS viral (r-ras) oncogene 2
mm39_v1_chr9_-_44179758_44179896	0.08256211414710977	GGAAGAC	ENSMUST00000034621.16|Nlrx1|ENSMUSG00000032109.16|NLR family member X1	ENSMUST00000168499.9|Nlrx1|ENSMUSG00000032109.16|NLR family member X1
mm39_v1_chr1_+_180396478_180396525	0.08167752198725012	GGAAGAC	ENSMUST00000027777.12|Parp1|ENSMUSG00000026496.12|poly (ADP-ribose) polymerase family, member 1
mm39_v1_chr11_+_57995055_57995192	0.07687375352871603	GGAAGAC	ENSMUST00000108843.8|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8	ENSMUST00000134896.2|Cnot8|ENSMUSG00000020515.14|CCR4-NOT transcription complex, subunit 8
mm39_v1_chr1_-_34882131_34882148	0.07651855809733075	GGAAGAC	ENSMUST00000167518.8|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B	ENSMUST00000047534.12|Fam168b|ENSMUSG00000037503.13|family with sequence similarity 168, member B
mm39_v1_chr11_+_22940519_22940584	0.07426378108344515	GGAAGAC	ENSMUST00000173867.8|Cct4|ENSMUSG00000007739.11|chaperonin containing Tcp1, subunit 4 (delta)
mm39_v1_chr13_+_45660905_45660994	0.07130273998499792	GGAAGAC	ENSMUST00000000260.13|Gmpr|ENSMUSG00000000253.14|guanosine monophosphate reductase
mm39_v1_chr5_-_36905983_36906039	0.07064617914226799	GGAAGAC	ENSMUST00000071949.5|Bloc1s4|ENSMUSG00000060708.5|biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino
mm39_v1_chr17_-_74601769_74601801	0.06930578102688144	GGAAGAC	ENSMUST00000078459.8|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1	ENSMUST00000232989.2|Memo1|ENSMUSG00000058704.10|mediator of cell motility 1
mm39_v1_chr15_+_41652777_41652913	0.06861824494423625	GGAAGAC	ENSMUST00000230778.2|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000022918.15|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000090095.13|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr16_+_64672334_64672437	0.06725118456400173	GGAAGAC	ENSMUST00000067744.8|Cggbp1|ENSMUSG00000054604.8|CGG triplet repeat binding protein 1
mm39_v1_chr9_+_113641615_113641685	0.06641693142823554	GGAAGAC	ENSMUST00000111838.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000166734.10|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000214522.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2	ENSMUST00000163895.3|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr3_-_131065658_131065750	0.06553101050532184	GGAAGAC	ENSMUST00000029610.9|Hadh|ENSMUSG00000027984.9|hydroxyacyl-Coenzyme A dehydrogenase
mm39_v1_chr10_-_84369831_84369926	0.06416527564626741	GGAAGAC	ENSMUST00000167671.2|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4	ENSMUST00000053871.5|Ckap4|ENSMUSG00000046841.6|cytoskeleton-associated protein 4
mm39_v1_chr9_-_72019109_72019191	0.06185550590730023	GGAAGAC	ENSMUST00000183404.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12	ENSMUST00000184783.8|Tcf12|ENSMUSG00000032228.17|transcription factor 12
mm39_v1_chr4_+_106418224_106418235	0.05946017078951583	GGAAGAC	ENSMUST00000047973.4|Dhcr24|ENSMUSG00000034926.4|24-dehydrocholesterol reductase
mm39_v1_chr6_-_82629835_82629910	0.058922359616558825	GGAAGAC	ENSMUST00000160281.8|Pole4|ENSMUSG00000030042.16|polymerase (DNA-directed), epsilon 4 (p12 subunit)	ENSMUST00000095786.6|Pole4|ENSMUSG00000030042.16|polymerase (DNA-directed), epsilon 4 (p12 subunit)
mm39_v1_chr17_+_34135145_34135175	0.05883651984877181	GGAAGAC	ENSMUST00000053429.11|Zbtb22|ENSMUSG00000051390.11|zinc finger and BTB domain containing 22	ENSMUST00000234582.2|Tapbp|ENSMUSG00000024308.16|TAP binding protein
mm39_v1_chr5_-_92231314_92231416	0.05860948906752927	GGAAGAC	ENSMUST00000169094.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2	ENSMUST00000167918.8|G3bp2|ENSMUSG00000029405.17|GTPase activating protein (SH3 domain) binding protein 2
mm39_v1_chr16_+_20470402_20470462	0.056496989558361924	GGAAGAC	ENSMUST00000007212.9|Psmd2|ENSMUSG00000006998.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	ENSMUST00000232629.2|Psmd2|ENSMUSG00000006998.17|proteasome (prosome, macropain) 26S subunit, non-ATPase, 2
mm39_v1_chr8_-_47805383_47805401	0.05602682249184447	GGAAGAC	ENSMUST00000110367.10|Stox2|ENSMUSG00000038143.17|storkhead box 2
mm39_v1_chr12_+_85520652_85520672	0.05561489951536614	GGAAGAC	ENSMUST00000021674.7|Fos|ENSMUSG00000021250.14|FBJ osteosarcoma oncogene
mm39_v1_chr11_-_22932090_22932382	0.0514198108648536	GGAAGAC	ENSMUST00000160826.2|Commd1b|ENSMUSG00000098650.2|COMM domain containing 1B	ENSMUST00000093270.6|Commd1|ENSMUSG00000051355.19|COMM domain containing 1	ENSMUST00000071068.9|Commd1|ENSMUSG00000051355.19|COMM domain containing 1	ENSMUST00000159081.8|Commd1|ENSMUSG00000051355.19|COMM domain containing 1
mm39_v1_chr4_-_126362372_126362446	0.05089831083342116	GGAAGAC	ENSMUST00000097888.10|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1	ENSMUST00000239399.2|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1
mm39_v1_chr8_-_85573489_85573563	0.05046354884819791	GGAAGAC	ENSMUST00000003912.7|Calr|ENSMUSG00000003814.9|calreticulin
mm39_v1_chr13_+_91609169_91609262	0.04865211018783929	GGAAGAC	ENSMUST00000004094.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2	ENSMUST00000042122.15|Ssbp2|ENSMUSG00000003992.16|single-stranded DNA binding protein 2
mm39_v1_chr2_-_60793536_60793595	0.04856805580140437	GGAAGAC	ENSMUST00000028347.13|Rbms1|ENSMUSG00000026970.17|RNA binding motif, single stranded interacting protein 1
mm39_v1_chr7_-_143294051_143294105	0.047834411599578686	GGAAGAC	ENSMUST00000119499.8|Osbpl5|ENSMUSG00000037606.19|oxysterol binding protein-like 5
mm39_v1_chr1_-_16727067_16727121	0.04777925988674448	GGAAGAC	ENSMUST00000188641.7|Eloc|ENSMUSG00000079658.10|elongin C
mm39_v1_chr6_+_8209216_8209265	0.047641687608452186	GGAAGAC	ENSMUST00000040017.8|Mios|ENSMUSG00000042447.14|meiosis regulator for oocyte development
mm39_v1_chr16_-_21982049_21982049	0.047345655715780005	GGAAGAC	ENSMUST00000100052.11|Igf2bp2|ENSMUSG00000033581.18|insulin-like growth factor 2 mRNA binding protein 2
mm39_v1_chr7_-_110443557_110443664	0.04504692319383337	GGAAGAC	ENSMUST00000177462.8|Rnf141|ENSMUSG00000030788.17|ring finger protein 141	ENSMUST00000176716.3|Rnf141|ENSMUSG00000030788.17|ring finger protein 141	ENSMUST00000176746.8|Rnf141|ENSMUSG00000030788.17|ring finger protein 141	ENSMUST00000177236.8|Rnf141|ENSMUSG00000030788.17|ring finger protein 141
mm39_v1_chr2_+_156705030_156705090	0.04351529133477682	GGAAGAC	ENSMUST00000029165.4|Rab5if|ENSMUSG00000027637.4|RAB5 interacting factor
mm39_v1_chr14_+_54701594_54701677	0.04340425315362476	GGAAGAC	ENSMUST00000022782.10|Lrp10|ENSMUSG00000022175.10|low-density lipoprotein receptor-related protein 10
mm39_v1_chr1_-_58625431_58625482	0.04243347423295688	GGAAGAC	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr4_-_149783097_149783165	0.04088875894809357	GGAAGAC	ENSMUST00000038859.14|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	ENSMUST00000105690.9|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
mm39_v1_chr10_-_119075910_119076002	0.04048936599651561	GGAAGAC	ENSMUST00000020315.13|Cand1|ENSMUSG00000020114.13|cullin associated and neddylation disassociated 1
mm39_v1_chr3_+_146110387_146110487	0.03962820054394136	GGAAGAC	ENSMUST00000106151.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000106153.9|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000039021.11|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000106149.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein	ENSMUST00000149262.8|Ssx2ip|ENSMUSG00000036825.13|synovial sarcoma, X 2 interacting protein
mm39_v1_chr3_-_104771716_104771821	0.039267333740156694	GGAAGAC	ENSMUST00000195912.2|Capza1|ENSMUSG00000070372.12|capping protein (actin filament) muscle Z-line, alpha 1	ENSMUST00000094028.10|Capza1|ENSMUSG00000070372.12|capping protein (actin filament) muscle Z-line, alpha 1
mm39_v1_chr2_-_34716083_34716099	0.038336086349537626	GGAAGAC	ENSMUST00000113077.8|Fbxw2|ENSMUSG00000035949.16|F-box and WD-40 domain protein 2	ENSMUST00000028220.10|Fbxw2|ENSMUSG00000035949.16|F-box and WD-40 domain protein 2
mm39_v1_chr16_-_11072131_11072167	0.03750390706816934	GGAAGAC	ENSMUST00000167571.8|Gspt1|ENSMUSG00000062203.16|G1 to S phase transition 1
mm39_v1_chr17_-_52139693_52139706	0.03738899831985676	GGAAGAC	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr1_-_93406515_93406544	0.0370115962410594	GGAAGAC	ENSMUST00000170883.8|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein	ENSMUST00000189025.7|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chr13_+_81931196_81931412	0.036611313879646494	GGAAGAC	ENSMUST00000022009.10|Cetn3|ENSMUSG00000021537.10|centrin 3	ENSMUST00000223793.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chr4_+_48045143_48045160	0.03639892409563143	GGAAGAC	ENSMUST00000030025.10|Nr4a3|ENSMUSG00000028341.10|nuclear receptor subfamily 4, group A, member 3
mm39_v1_chr6_+_47431254_47431359	0.034901964638804746	GGAAGAC	ENSMUST00000031697.9|Cul1|ENSMUSG00000029686.16|cullin 1	ENSMUST00000143941.3|Cul1|ENSMUSG00000029686.16|cullin 1
mm39_v1_chr11_+_94520567_94520660	0.03353333705150009	GGAAGAC	ENSMUST00000021239.7|Lrrc59|ENSMUSG00000020869.9|leucine rich repeat containing 59
mm39_v1_chr2_-_156728988_156729003	0.029648500829264762	GGAAGAC	ENSMUST00000029164.9|Sla2|ENSMUSG00000027636.12|Src-like-adaptor 2
mm39_v1_chr7_+_121888520_121888563	0.029344506748142492	GGAAGAC	ENSMUST00000064989.12|Prkcb|ENSMUSG00000052889.12|protein kinase C, beta	ENSMUST00000064921.5|Prkcb|ENSMUSG00000052889.12|protein kinase C, beta
mm39_v1_chr15_-_85918378_85918413	0.028861179923118326	GGAAGAC	ENSMUST00000016172.10|Celsr1|ENSMUSG00000016028.12|cadherin, EGF LAG seven-pass G-type receptor 1
mm39_v1_chr2_+_75662511_75662538	0.028505029472921165	GGAAGAC	ENSMUST00000047232.14|Agps|ENSMUSG00000042410.17|alkylglycerone phosphate synthase	ENSMUST00000111952.9|Agps|ENSMUSG00000042410.17|alkylglycerone phosphate synthase
mm39_v1_chr15_-_96597610_96597617	0.027784131753549452	GGAAGAC	ENSMUST00000023099.8|Slc38a2|ENSMUSG00000022462.8|solute carrier family 38, member 2
mm39_v1_chr9_-_77452152_77452196	0.027747447073596703	GGAAGAC	ENSMUST00000183873.8|Lrrc1|ENSMUSG00000032352.17|leucine rich repeat containing 1
mm39_v1_chr10_-_120815232_120815279	0.027447195678230257	GGAAGAC	ENSMUST00000119944.8|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3	ENSMUST00000119093.2|Lemd3|ENSMUSG00000048661.15|LEM domain containing 3
mm39_v1_chr19_-_53378990_53379012	0.027164852103361423	GGAAGAC	ENSMUST00000025997.7|Smndc1|ENSMUSG00000025024.8|survival motor neuron domain containing 1
mm39_v1_chr3_-_101017594_101017652	0.026086137887645827	GGAAGAC	ENSMUST00000102694.4|Ptgfrn|ENSMUSG00000027864.10|prostaglandin F2 receptor negative regulator
mm39_v1_chr1_-_181669891_181669949	0.02434124126121459	GGAAGAC	ENSMUST00000193028.2|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000191878.6|Lbr|ENSMUSG00000004880.12|lamin B receptor	ENSMUST00000005003.12|Lbr|ENSMUSG00000004880.12|lamin B receptor
mm39_v1_chr17_+_29709723_29709742	0.02388550242666963	GGAAGAC	ENSMUST00000024811.9|Pim1|ENSMUSG00000024014.9|proviral integration site 1
mm39_v1_chr7_+_18659787_18659826	0.023849755650914708	GGAAGAC	ENSMUST00000032571.10|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2	ENSMUST00000220302.2|Nova2|ENSMUSG00000030411.17|NOVA alternative splicing regulator 2
mm39_v1_chr11_-_120524362_120524431	0.021817476381993325	GGAAGAC	ENSMUST00000058162.14|Mafg|ENSMUSG00000051510.14|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm39_v1_chr10_+_82534841_82534983	0.021697518881054076	GGAAGAC	ENSMUST00000020478.14|Hcfc2|ENSMUSG00000020246.14|host cell factor C2
mm39_v1_chr19_-_12773472_12773510	0.021656409055129097	GGAAGAC	ENSMUST00000038627.9|Zfp91|ENSMUSG00000024695.17|zinc finger protein 91
mm39_v1_chr2_-_34262012_34262056	0.02116133807222759	GGAAGAC	ENSMUST00000113132.9|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000040638.15|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr1_-_75119277_75119360	0.020954337373440882	GGAAGAC	ENSMUST00000168720.8|Cnppd1|ENSMUSG00000033159.15|cyclin Pas1/PHO80 domain containing 1	ENSMUST00000041213.12|Cnppd1|ENSMUSG00000033159.15|cyclin Pas1/PHO80 domain containing 1	ENSMUST00000189809.2|Cnppd1|ENSMUSG00000033159.15|cyclin Pas1/PHO80 domain containing 1
mm39_v1_chr8_-_71916244_71916324	0.02080355390049428	GGAAGAC	ENSMUST00000008094.10|Abhd8|ENSMUSG00000007950.10|abhydrolase domain containing 8
mm39_v1_chr19_+_38919353_38919364	0.0207285557302852	GGAAGAC	ENSMUST00000025965.12|Hells|ENSMUSG00000025001.12|helicase, lymphoid specific
mm39_v1_chr8_-_111985824_111985858	0.02066108965207391	GGAAGAC	ENSMUST00000169020.8|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1	ENSMUST00000003404.9|Glg1|ENSMUSG00000003316.15|golgi apparatus protein 1
mm39_v1_chr13_+_117738972_117739018	0.020548933422205384	GGAAGAC	ENSMUST00000006991.9|Hcn1|ENSMUSG00000021730.9|hyperpolarization activated cyclic nucleotide gated potassium channel 1
mm39_v1_chr6_-_42301574_42301606	0.02045962509815734	GGAAGAC	ENSMUST00000031891.15|Fam131b|ENSMUSG00000029861.18|family with sequence similarity 131, member B	ENSMUST00000143278.8|Fam131b|ENSMUSG00000029861.18|family with sequence similarity 131, member B
mm39_v1_chr18_+_35904541_35904655	0.020436339858551606	GGAAGAC	ENSMUST00000170693.9|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000237984.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A	ENSMUST00000167406.2|Ube2d2a|ENSMUSG00000091896.9|ubiquitin-conjugating enzyme E2D 2A
mm39_v1_chr3_+_34074048_34074092	0.02029478870822688	GGAAGAC	ENSMUST00000001620.13|Fxr1|ENSMUSG00000027680.16|fragile X mental retardation gene 1, autosomal homolog
mm39_v1_chr12_+_76417040_76417040	0.019918210923808938	GGAAGAC	ENSMUST00000042779.4|Zbtb1|ENSMUSG00000033454.7|zinc finger and BTB domain containing 1
mm39_v1_chr12_-_73160181_73160230	0.01963818540233942	GGAAGAC	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr15_-_78602971_78602971	0.01962729935811967	GGAAGAC	ENSMUST00000088592.6|Elfn2|ENSMUSG00000043460.8|leucine rich repeat and fibronectin type III, extracellular 2
mm39_v1_chr11_-_78642480_78642555	0.0193443338846996	GGAAGAC	ENSMUST00000059468.6|Ccnq|ENSMUSG00000049489.6|cyclin Q
mm39_v1_chr11_+_102175757_102175857	0.019333415926929522	GGAAGAC	ENSMUST00000036376.13|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2	ENSMUST00000100387.11|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr2_+_131028861_131028891	0.01820245419954325	GGAAGAC	ENSMUST00000028804.15|Cdc25b|ENSMUSG00000027330.17|cell division cycle 25B	ENSMUST00000079857.9|Cdc25b|ENSMUSG00000027330.17|cell division cycle 25B
mm39_v1_chr1_+_187730018_187730031	0.01796628158882161	GGAAGAC	ENSMUST00000027906.13|Esrrg|ENSMUSG00000026610.14|estrogen-related receptor gamma
mm39_v1_chr16_-_87229485_87229503	0.01769549362610854	GGAAGAC	ENSMUST00000039449.9|Ltn1|ENSMUSG00000052299.10|listerin E3 ubiquitin protein ligase 1
mm39_v1_chr7_-_28011451_28011497	0.017612919577754578	GGAAGAC	ENSMUST00000081946.5|Timm50|ENSMUSG00000003438.18|translocase of inner mitochondrial membrane 50
mm39_v1_chr15_+_102314809_102314833	0.017089036238025948	GGAAGAC	ENSMUST00000001326.7|Sp1|ENSMUSG00000001280.14|trans-acting transcription factor 1
mm39_v1_chr8_-_80784619_80784646	0.017054212983287194	GGAAGAC	ENSMUST00000079038.4|Hhip|ENSMUSG00000064325.5|Hedgehog-interacting protein
mm39_v1_chr2_-_167032068_167032093	0.016413179804948407	GGAAGAC	ENSMUST00000059826.10|Kcnb1|ENSMUSG00000050556.10|potassium voltage gated channel, Shab-related subfamily, member 1
mm39_v1_chr3_+_138231935_138231940	0.016409601965359778	GGAAGAC	ENSMUST00000029803.12|Eif4e|ENSMUSG00000028156.13|eukaryotic translation initiation factor 4E
mm39_v1_chr6_-_124715560_124715588	0.015984071616490892	GGAAGAC	ENSMUST00000004377.15|Ptpn6|ENSMUSG00000004266.16|protein tyrosine phosphatase, non-receptor type 6
mm39_v1_chr2_+_132688558_132688628	0.01583612239093308	GGAAGAC	ENSMUST00000028835.13|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1	ENSMUST00000110122.10|Crls1|ENSMUSG00000027357.17|cardiolipin synthase 1
mm39_v1_chr10_+_62756409_62756425	0.015800876966418267	GGAAGAC	ENSMUST00000044977.10|Slc25a16|ENSMUSG00000071253.9|solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16
mm39_v1_chr2_+_118731860_118731969	0.015621594983585872	GGAAGAC	ENSMUST00000036578.7|Bahd1|ENSMUSG00000040007.9|bromo adjacent homology domain containing 1
mm39_v1_chr13_+_15638466_15638565	0.01522882463524562	GGAAGAC	ENSMUST00000110510.4|Gli3|ENSMUSG00000021318.16|GLI-Kruppel family member GLI3
mm39_v1_chr11_+_72498029_72498133	0.015112367461816493	GGAAGAC	ENSMUST00000021148.13|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1	ENSMUST00000138247.8|Ube2g1|ENSMUSG00000020794.14|ubiquitin-conjugating enzyme E2G 1
mm39_v1_chr4_-_135221926_135221939	0.015052735343435904	GGAAGAC	ENSMUST00000102549.10|Nipal3|ENSMUSG00000028803.19|NIPA-like domain containing 3
mm39_v1_chr7_+_65729391_65729450	0.014977112327917229	GGAAGAC	ENSMUST00000101801.8|Selenos|ENSMUSG00000075701.11|selenoprotein S	ENSMUST00000206575.2|Selenos|ENSMUSG00000075701.11|selenoprotein S
mm39_v1_chr12_+_80837284_80837348	0.01466524296909509	GGAAGAC	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr9_-_59393893_59393919	0.014314049910607031	GGAAGAC	ENSMUST00000171975.8|Arih1|ENSMUSG00000025234.12|ariadne RBR E3 ubiquitin protein ligase 1
mm39_v1_chr2_+_155223728_155223804	0.014087599223003342	GGAAGAC	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr1_-_151965876_151965918	0.01326234722801447	GGAAGAC	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr9_+_45817795_45817850	0.012784899031018688	GGAAGAC	ENSMUST00000039059.8|Pcsk7|ENSMUSG00000035382.10|proprotein convertase subtilisin/kexin type 7
mm39_v1_chr9_+_57615816_57615891	0.012463407258635154	GGAAGAC	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr16_-_4950285_4950347	0.012425653150025409	GGAAGAC	ENSMUST00000035672.5|Ppl|ENSMUSG00000039457.5|periplakin
mm39_v1_chr12_+_95658987_95659011	0.01241958335269378	GGAAGAC	ENSMUST00000057324.4|Flrt2|ENSMUSG00000047414.7|fibronectin leucine rich transmembrane protein 2
mm39_v1_chr19_-_37340010_37340010	0.011732752900264763	GGAAGAC	ENSMUST00000131070.3|Ide|ENSMUSG00000056999.17|insulin degrading enzyme
mm39_v1_chr1_-_182169150_182169190	0.01141879749129738	GGAAGAC	ENSMUST00000051431.10|Fbxo28|ENSMUSG00000047539.10|F-box protein 28
mm39_v1_chr1_+_75119419_75119443	0.010832413015246843	GGAAGAC	ENSMUST00000097694.11|Retreg2|ENSMUSG00000049339.17|reticulophagy regulator family member 2	ENSMUST00000190240.7|Retreg2|ENSMUSG00000049339.17|reticulophagy regulator family member 2
mm39_v1_chr7_+_109617456_109617481	0.010345540320027156	GGAAGAC	ENSMUST00000084731.5|Ipo7|ENSMUSG00000066232.5|importin 7
mm39_v1_chr15_-_96953823_96953845	0.00974855033069219	GGAAGAC	ENSMUST00000023101.10|Slc38a4|ENSMUSG00000022464.15|solute carrier family 38, member 4
mm39_v1_chr11_+_110956980_110957000	0.009512988723117738	GGAAGAC	ENSMUST00000042970.3|Kcnj2|ENSMUSG00000041695.3|potassium inwardly-rectifying channel, subfamily J, member 2
mm39_v1_chr1_+_131838294_131838310	0.009027740690635132	GGAAGAC	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr12_-_85871281_85871330	0.008846218368857815	GGAAGAC	ENSMUST00000021676.12|Erg28|ENSMUSG00000021252.12|ergosterol biosynthesis 28	ENSMUST00000142331.2|Erg28|ENSMUSG00000021252.12|ergosterol biosynthesis 28
mm39_v1_chr1_+_58432021_58432057	0.008779278462218406	GGAAGAC	ENSMUST00000050552.15|Bzw1|ENSMUSG00000051223.15|basic leucine zipper and W2 domains 1
mm39_v1_chr8_+_105951777_105951827	0.008608623470539218	GGAAGAC	ENSMUST00000034361.10|D230025D16Rik|ENSMUSG00000031889.10|RIKEN cDNA D230025D16 gene
mm39_v1_chr11_-_102709936_102710041	0.008334836545650435	GGAAGAC	ENSMUST00000068933.12|Gjc1|ENSMUSG00000034520.15|gap junction protein, gamma 1
mm39_v1_chr4_-_82423985_82424044	0.008322852499456647	GGAAGAC	ENSMUST00000107245.9|Nfib|ENSMUSG00000008575.18|nuclear factor I/B	ENSMUST00000107246.2|Nfib|ENSMUSG00000008575.18|nuclear factor I/B
mm39_v1_chr15_-_98661076_98661101	0.008156775001910168	GGAAGAC	ENSMUST00000053183.12|Arf3|ENSMUSG00000051853.11|ADP-ribosylation factor 3
mm39_v1_chr19_+_11889752_11889839	0.008146739468833436	GGAAGAC	ENSMUST00000061618.9|Patl1|ENSMUSG00000046139.9|protein associated with topoisomerase II homolog 1 (yeast)
mm39_v1_chr3_+_88461059_88461112	0.007579474246964421	GGAAGAC	ENSMUST00000008748.8|Ubqln4|ENSMUSG00000008604.12|ubiquilin 4
mm39_v1_chr2_+_152068729_152068828	0.007576323399681962	GGAAGAC	ENSMUST00000099224.10|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000124791.8|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide	ENSMUST00000133119.2|Csnk2a1|ENSMUSG00000074698.11|casein kinase 2, alpha 1 polypeptide
mm39_v1_chr2_-_92264374_92264398	0.007476941278249166	GGAAGAC	ENSMUST00000111278.2|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)	ENSMUST00000090559.12|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)
mm39_v1_chr7_-_46658144_46658169	0.0070738553693411145	GGAAGAC	ENSMUST00000061639.10|Spty2d1|ENSMUSG00000049516.10|SPT2 chromatin protein domain containing 1
mm39_v1_chr11_-_6425877_6425917	0.006267689167278207	GGAAGAC	ENSMUST00000179343.3|Purb|ENSMUSG00000094483.3|purine rich element binding protein B
mm39_v1_chr11_-_42073737_42073762	0.006250611346248723	GGAAGAC	ENSMUST00000206085.2|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000020707.12|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	ENSMUST00000132971.3|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm39_v1_chr10_-_125164399_125164410	0.005971669530690677	GGAAGAC	ENSMUST00000063318.10|Slc16a7|ENSMUSG00000020102.16|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm39_v1_chr11_+_97253221_97253377	0.005791725690323433	GGAAGAC	ENSMUST00000238729.2|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7	ENSMUST00000045540.4|Socs7|ENSMUSG00000038485.7|suppressor of cytokine signaling 7
mm39_v1_chr5_+_91051722_91051739	0.005681320060818555	GGAAGAC	ENSMUST00000200681.4|Cxcl2|ENSMUSG00000058427.11|chemokine (C-X-C motif) ligand 2	ENSMUST00000075433.8|Cxcl2|ENSMUSG00000058427.11|chemokine (C-X-C motif) ligand 2
mm39_v1_chr18_+_34891941_34891959	0.004776967551587844	GGAAGAC	ENSMUST00000049281.12|Fam53c|ENSMUSG00000034300.18|family with sequence similarity 53, member C
mm39_v1_chr15_-_48655329_48655459	0.004668699870930844	GGAAGAC	ENSMUST00000160658.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000100670.10|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3	ENSMUST00000162830.8|Csmd3|ENSMUSG00000022311.16|CUB and Sushi multiple domains 3
mm39_v1_chr1_+_153528689_153528771	0.004442026985819776	GGAAGAC	ENSMUST00000041776.12|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr2_-_155356716_155356775	0.004357027226691459	GGAAGAC	ENSMUST00000029131.11|Ggt7|ENSMUSG00000027603.16|gamma-glutamyltransferase 7
mm39_v1_chr7_+_3381434_3381471	0.0041645597342123385	GGAAGAC	ENSMUST00000092891.6|Cacng7|ENSMUSG00000069806.6|calcium channel, voltage-dependent, gamma subunit 7
mm39_v1_chr11_-_118800314_118800398	0.004001623598544142	GGAAGAC	ENSMUST00000117731.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000106278.9|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000120061.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000017576.11|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3
mm39_v1_chr16_+_33201164_33201206	0.0037443468846614907	GGAAGAC	ENSMUST00000165418.9|Zfp148|ENSMUSG00000022811.18|zinc finger protein 148
mm39_v1_chr18_+_11052458_11052479	0.0036223324133089108	GGAAGAC	ENSMUST00000047762.10|Gata6|ENSMUSG00000005836.11|GATA binding protein 6
mm39_v1_chr3_+_68776884_68776921	0.0034104759436596466	GGAAGAC	ENSMUST00000054551.3|1110032F04Rik|ENSMUSG00000046999.3|RIKEN cDNA 1110032F04 gene
mm39_v1_chr6_+_47897410_47897572	0.003195813941689206	GGAAGAC	ENSMUST00000009411.9|Zfp212|ENSMUSG00000052763.8|Zinc finger protein 212
mm39_v1_chr2_+_105499233_105499259	0.003188219876604837	GGAAGAC	ENSMUST00000111086.11|Pax6|ENSMUSG00000027168.22|paired box 6	ENSMUST00000111087.10|Pax6|ENSMUSG00000027168.22|paired box 6
mm39_v1_chr7_-_64806164_64806318	0.0030092357319120434	GGAAGAC	ENSMUST00000148459.3|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1	ENSMUST00000119118.8|Fam189a1|ENSMUSG00000030518.18|family with sequence similarity 189, member A1
mm39_v1_chr15_-_97902576_97902589	0.0029323179664602216	GGAAGAC	ENSMUST00000023123.15|Col2a1|ENSMUSG00000022483.18|collagen, type II, alpha 1
mm39_v1_chr14_-_8457069_8457272	0.002784933574015752	GGAAGAC	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr17_+_27874519_27874542	0.002713453284911098	GGAAGAC	ENSMUST00000045896.11|Pacsin1|ENSMUSG00000040276.16|protein kinase C and casein kinase substrate in neurons 1
mm39_v1_chr8_+_95328558_95328631	0.0026384752468559657	GGAAGAC	ENSMUST00000060389.10|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000212729.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1	ENSMUST00000121101.2|Rspry1|ENSMUSG00000050079.11|ring finger and SPRY domain containing 1
mm39_v1_chrX_-_140508177_140508259	0.002563402412874757	GGAAGAC	ENSMUST00000067841.8|Irs4|ENSMUSG00000054667.8|insulin receptor substrate 4
mm39_v1_chr16_+_91855158_91855216	0.002444360693233319	GGAAGAC	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr10_+_36383008_36383022	0.002150127079794669	GGAAGAC	ENSMUST00000168572.8|Hs3st5|ENSMUSG00000044499.12|heparan sulfate (glucosamine) 3-O-sulfotransferase 5
mm39_v1_chr6_-_89339581_89339602	0.002121747771351866	GGAAGAC	ENSMUST00000163139.8|Plxna1|ENSMUSG00000030084.12|plexin A1
mm39_v1_chr18_+_59308722_59308722	0.002007920214651776	GGAAGAC	ENSMUST00000080721.6|Chsy3|ENSMUSG00000058152.9|chondroitin sulfate synthase 3
mm39_v1_chr15_+_96185399_96185487	0.001913801173979644	GGAAGAC	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr9_-_96634874_96634924	0.0018816960851110883	GGAAGAC	ENSMUST00000152594.8|Zbtb38|ENSMUSG00000040433.17|zinc finger and BTB domain containing 38
mm39_v1_chr6_+_4505493_4505493	0.0017462449432795748	GGAAGAC	ENSMUST00000031668.10|Col1a2|ENSMUSG00000029661.17|collagen, type I, alpha 2
mm39_v1_chr5_-_31453206_31453424	0.0014685140510122998	GGAAGAC	ENSMUST00000041266.11|Fndc4|ENSMUSG00000038552.15|fibronectin type III domain containing 4	ENSMUST00000172435.8|Fndc4|ENSMUSG00000038552.15|fibronectin type III domain containing 4	ENSMUST00000201417.2|Fndc4|ENSMUSG00000038552.15|fibronectin type III domain containing 4
mm39_v1_chr12_+_4819277_4819337	0.0013747601367846722	GGAAGAC	ENSMUST00000020967.11|Pfn4|ENSMUSG00000020639.15|profilin family, member 4
mm39_v1_chr13_+_38010203_38010291	0.0011687142768616063	GGAAGAC	ENSMUST00000128570.9|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr11_-_75686874_75686907	0.0011514008732427948	GGAAGAC	ENSMUST00000021209.8|Doc2b|ENSMUSG00000020848.8|double C2, beta
mm39_v1_chr4_-_120144546_120144546	0.0010862407055963557	GGAAGAC	ENSMUST00000102656.4|Foxo6|ENSMUSG00000052135.9|forkhead box O6
mm39_v1_chr4_-_119349760_119349825	0.001086175497268375	GGAAGAC	ENSMUST00000049994.8|Rimkla|ENSMUSG00000048899.9|ribosomal modification protein rimK-like family member A
mm39_v1_chr16_+_6166982_6167008	0.0009424722595291938	GGAAGAC	ENSMUST00000056416.9|Rbfox1|ENSMUSG00000008658.17|RNA binding protein, fox-1 homolog (C. elegans) 1
mm39_v1_chr10_-_80861239_80861246	0.0008570622509872874	GGAAGAC	ENSMUST00000055125.5|Diras1|ENSMUSG00000043670.5|DIRAS family, GTP-binding RAS-like 1
mm39_v1_chr13_+_75237939_75237952	0.0007939490380583987	GGAAGAC	ENSMUST00000022075.6|Pcsk1|ENSMUSG00000021587.6|proprotein convertase subtilisin/kexin type 1
mm39_v1_chr17_+_70276068_70276083	0.000584296543586893	GGAAGAC	ENSMUST00000133983.8|Dlgap1|ENSMUSG00000003279.18|DLG associated protein 1
