mm39_v1_chr7_+_16515265_16515277	0.03628324818522129	GGAGUGU	ENSMUST00000108496.9|Slc1a5|ENSMUSG00000001918.18|solute carrier family 1 (neutral amino acid transporter), member 5
mm39_v1_chr10_+_59159118_59159196	0.03622193957796974	GGAGUGU	ENSMUST00000009789.15|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	ENSMUST00000092512.11|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	ENSMUST00000105466.3|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
mm39_v1_chr8_+_108020092_108020118	0.02093891176236892	GGAGUGU	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chr5_-_74229021_74229099	0.017568336153626386	GGAGUGU	ENSMUST00000119154.8|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46	ENSMUST00000068058.14|Usp46|ENSMUSG00000054814.15|ubiquitin specific peptidase 46
mm39_v1_chr19_-_40576782_40576815	0.015737828970843713	GGAGUGU	ENSMUST00000176939.8|Aldh18a1|ENSMUSG00000025007.14|aldehyde dehydrogenase 18 family, member A1
mm39_v1_chr16_-_31019967_31020064	0.015466471850892248	GGAGUGU	ENSMUST00000230614.2|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	ENSMUST00000058033.9|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm39_v1_chr2_-_34803988_34804055	0.01502842174608966	GGAGUGU	ENSMUST00000028232.7|Phf19|ENSMUSG00000026873.10|PHD finger protein 19	ENSMUST00000202907.2|Phf19|ENSMUSG00000026873.10|PHD finger protein 19
mm39_v1_chr16_+_10884156_10884247	0.014257213474233647	GGAGUGU	ENSMUST00000089011.6|Snn|ENSMUSG00000037972.8|stannin
mm39_v1_chr4_-_135000109_135000130	0.012318080315908123	GGAGUGU	ENSMUST00000037099.9|Clic4|ENSMUSG00000037242.9|chloride intracellular channel 4 (mitochondrial)
mm39_v1_chr8_+_89373943_89374019	0.012150286870963275	GGAGUGU	ENSMUST00000118370.8|Nod2|ENSMUSG00000055994.16|nucleotide-binding oligomerization domain containing 2	ENSMUST00000054324.15|Nod2|ENSMUSG00000055994.16|nucleotide-binding oligomerization domain containing 2
mm39_v1_chrX_+_74425990_74426005	0.01190701868234802	GGAGUGU	ENSMUST00000033541.5|Fundc2|ENSMUSG00000031198.5|FUN14 domain containing 2
mm39_v1_chr2_-_153371861_153371907	0.011675878999760976	GGAGUGU	ENSMUST00000035346.14|Nol4l|ENSMUSG00000061411.13|nucleolar protein 4-like
mm39_v1_chrX_-_100312629_100312629	0.011034246187786529	GGAGUGU	ENSMUST00000117736.2|Gm20489|ENSMUSG00000092463.2|predicted gene 20489
mm39_v1_chr17_-_84154173_84154186	0.010392627586502362	GGAGUGU	ENSMUST00000000687.9|Haao|ENSMUSG00000000673.10|3-hydroxyanthranilate 3,4-dioxygenase
mm39_v1_chr1_-_164285914_164285932	0.009655080571131172	GGAGUGU	ENSMUST00000027863.13|Atp1b1|ENSMUSG00000026576.13|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm39_v1_chr2_-_25498459_25498533	0.009468556339683689	GGAGUGU	ENSMUST00000058137.9|Rabl6|ENSMUSG00000015087.15|RAB, member RAS oncogene family-like 6
mm39_v1_chr10_+_128173603_128173628	0.009235582520902818	GGAGUGU	ENSMUST00000005826.9|Cs|ENSMUSG00000005683.9|citrate synthase
mm39_v1_chr14_-_106134253_106134253	0.008836645041945207	GGAGUGU	ENSMUST00000022709.6|Spry2|ENSMUSG00000022114.6|sprouty RTK signaling antagonist 2
mm39_v1_chr7_-_127048280_127048338	0.008215616475870382	GGAGUGU	ENSMUST00000053392.11|Zfp689|ENSMUSG00000048921.12|zinc finger protein 689
mm39_v1_chr9_+_96078340_96078406	0.008012189989258404	GGAGUGU	ENSMUST00000034982.16|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000188008.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000188750.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000185644.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr3_+_135531409_135531425	0.00791721415699759	GGAGUGU	ENSMUST00000180196.8|Slc39a8|ENSMUSG00000053897.16|solute carrier family 39 (metal ion transporter), member 8
mm39_v1_chr8_+_111821262_111821273	0.007830089878511283	GGAGUGU	ENSMUST00000135302.8|Pdpr|ENSMUSG00000033624.11|pyruvate dehydrogenase phosphatase regulatory subunit	ENSMUST00000039333.10|Pdpr|ENSMUSG00000033624.11|pyruvate dehydrogenase phosphatase regulatory subunit
mm39_v1_chr3_+_103009920_103010030	0.007104794249965936	GGAGUGU	ENSMUST00000173206.8|Dennd2c|ENSMUSG00000007379.16|DENN/MADD domain containing 2C
mm39_v1_chrX_-_55643429_55643467	0.006920257960356912	GGAGUGU	ENSMUST00000059899.3|Mmgt1|ENSMUSG00000061273.4|membrane magnesium transporter 1
mm39_v1_chr4_-_133399909_133399964	0.006848664448074822	GGAGUGU	ENSMUST00000062118.11|Pigv|ENSMUSG00000043257.16|phosphatidylinositol glycan anchor biosynthesis, class V	ENSMUST00000067902.13|Pigv|ENSMUSG00000043257.16|phosphatidylinositol glycan anchor biosynthesis, class V
mm39_v1_chr19_-_6947112_6947182	0.006590618159268248	GGAGUGU	ENSMUST00000025912.10|Plcb3|ENSMUSG00000024960.10|phospholipase C, beta 3
mm39_v1_chr9_-_50571080_50571107	0.0061736793964180725	GGAGUGU	ENSMUST00000034567.4|Dlat|ENSMUSG00000000168.11|dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)
mm39_v1_chr11_-_87249837_87249901	0.005871148924731441	GGAGUGU	ENSMUST00000055438.5|Ppm1e|ENSMUSG00000046442.5|protein phosphatase 1E (PP2C domain containing)
mm39_v1_chr7_-_16796309_16796352	0.005860748947221178	GGAGUGU	ENSMUST00000153833.2|Hif3a|ENSMUSG00000004328.16|hypoxia inducible factor 3, alpha subunit	ENSMUST00000108492.9|Hif3a|ENSMUSG00000004328.16|hypoxia inducible factor 3, alpha subunit
mm39_v1_chr1_+_155034452_155034522	0.005839824855850803	GGAGUGU	ENSMUST00000027743.13|Stx6|ENSMUSG00000026470.15|syntaxin 6	ENSMUST00000195302.6|Stx6|ENSMUSG00000026470.15|syntaxin 6
mm39_v1_chr1_+_55276336_55276414	0.005616861553569657	GGAGUGU	ENSMUST00000061334.10|Mars2|ENSMUSG00000046994.10|methionine-tRNA synthetase 2 (mitochondrial)
mm39_v1_chr4_-_126362372_126362446	0.005283342979896804	GGAGUGU	ENSMUST00000097888.10|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1	ENSMUST00000239399.2|Ago1|ENSMUSG00000041530.18|argonaute RISC catalytic subunit 1
mm39_v1_chr15_+_37233280_37233318	0.005054644583785138	GGAGUGU	ENSMUST00000161405.8|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000022895.15|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000161532.2|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2
mm39_v1_chr4_-_45408646_45408768	0.005021942358220118	GGAGUGU	ENSMUST00000153904.2|Slc25a51|ENSMUSG00000045973.19|solute carrier family 25, member 51	ENSMUST00000132815.3|Slc25a51|ENSMUSG00000045973.19|solute carrier family 25, member 51	ENSMUST00000107796.8|Slc25a51|ENSMUSG00000045973.19|solute carrier family 25, member 51	ENSMUST00000116341.4|Slc25a51|ENSMUSG00000045973.19|solute carrier family 25, member 51
mm39_v1_chr5_-_148336711_148336722	0.004973396068213468	GGAGUGU	ENSMUST00000048116.15|Slc7a1|ENSMUSG00000041313.15|solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
mm39_v1_chr12_+_57277192_57277289	0.0049400372232018906	GGAGUGU	ENSMUST00000139049.2|Prps1l3|ENSMUSG00000079104.5|phosphoribosyl pyrophosphate synthetase 1-like 3	ENSMUST00000145003.8|Mipol1|ENSMUSG00000047022.19|mirror-image polydactyly 1	ENSMUST00000123498.8|Mipol1|ENSMUSG00000047022.19|mirror-image polydactyly 1
mm39_v1_chr8_+_4216556_4216739	0.004720031797654151	GGAGUGU	ENSMUST00000239400.2|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000177053.8|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176149.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176072.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176825.3|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like
mm39_v1_chr12_-_104718159_104718211	0.004718236685538316	GGAGUGU	ENSMUST00000041987.7|Dicer1|ENSMUSG00000041415.11|dicer 1, ribonuclease type III
mm39_v1_chr7_-_126807581_126807676	0.004693616043934977	GGAGUGU	ENSMUST00000120705.3|Tbc1d10b|ENSMUSG00000042492.13|TBC1 domain family, member 10b
mm39_v1_chr17_-_28705082_28705123	0.004676905253324357	GGAGUGU	ENSMUST00000079413.11|Fkbp5|ENSMUSG00000024222.18|FK506 binding protein 5
mm39_v1_chr17_-_57242413_57242504	0.004503224453842034	GGAGUGU	ENSMUST00000025053.10|Mllt1|ENSMUSG00000024212.10|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1
mm39_v1_chr10_+_69932930_69933066	0.004272065671876416	GGAGUGU	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr7_-_25418401_25418513	0.004185214903061229	GGAGUGU	ENSMUST00000125699.3|Ccdc97|ENSMUSG00000002608.9|coiled-coil domain containing 97	ENSMUST00000002683.3|Ccdc97|ENSMUSG00000002608.9|coiled-coil domain containing 97
mm39_v1_chr4_-_151142351_151142444	0.003808681812486033	GGAGUGU	ENSMUST00000030797.4|Vamp3|ENSMUSG00000028955.4|vesicle-associated membrane protein 3
mm39_v1_chr1_+_139349912_139350120	0.003771566875935614	GGAGUGU	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr1_+_131755715_131755757	0.003603006903401378	GGAGUGU	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr15_+_76423012_76423076	0.003434219889408679	GGAGUGU	ENSMUST00000023220.10|Slc52a2|ENSMUSG00000022560.10|solute carrier protein 52, member 2
mm39_v1_chr12_-_55867941_55867995	0.003056644448348768	GGAGUGU	ENSMUST00000085385.7|Ralgapa1|ENSMUSG00000021027.18|Ral GTPase activating protein, alpha subunit 1	ENSMUST00000110687.8|Ralgapa1|ENSMUSG00000021027.18|Ral GTPase activating protein, alpha subunit 1
mm39_v1_chr2_-_120234539_120234584	0.003015188319425449	GGAGUGU	ENSMUST00000090042.12|Tmem87a|ENSMUSG00000033808.17|transmembrane protein 87A	ENSMUST00000110729.2|Tmem87a|ENSMUSG00000033808.17|transmembrane protein 87A	ENSMUST00000090046.12|Tmem87a|ENSMUSG00000033808.17|transmembrane protein 87A
mm39_v1_chr11_-_40646090_40646138	0.00278820776202264	GGAGUGU	ENSMUST00000020576.8|Ccng1|ENSMUSG00000020326.8|cyclin G1
mm39_v1_chr13_+_92491234_92491274	0.002664885165684418	GGAGUGU	ENSMUST00000022218.6|Dhfr|ENSMUSG00000021707.6|dihydrofolate reductase
mm39_v1_chr11_+_4136789_4136864	0.0025485323290679067	GGAGUGU	ENSMUST00000041042.13|Tbc1d10a|ENSMUSG00000034412.14|TBC1 domain family, member 10a	ENSMUST00000180088.2|Tbc1d10a|ENSMUSG00000034412.14|TBC1 domain family, member 10a
mm39_v1_chr6_-_85046430_85046505	0.0025093844592388817	GGAGUGU	ENSMUST00000160197.6|Exoc6b|ENSMUSG00000033769.17|exocyst complex component 6B
mm39_v1_chr4_+_136013372_136013425	0.0022708750697056582	GGAGUGU	ENSMUST00000069195.5|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46	ENSMUST00000130658.2|Zfp46|ENSMUSG00000051351.15|zinc finger protein 46
mm39_v1_chr13_+_16189041_16189060	0.002255564478173284	GGAGUGU	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr4_+_133097013_133097020	0.002188807855915699	GGAGUGU	ENSMUST00000030669.8|Slc9a1|ENSMUSG00000028854.10|solute carrier family 9 (sodium/hydrogen exchanger), member 1
mm39_v1_chr11_-_61821072_61821083	0.00200432279726149	GGAGUGU	ENSMUST00000102650.10|Akap10|ENSMUSG00000047804.16|A kinase (PRKA) anchor protein 10
mm39_v1_chr18_+_32296126_32296249	0.001980412267121949	GGAGUGU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr19_+_11493825_11493876	0.0019679430774729267	GGAGUGU	ENSMUST00000163078.8|Ms4a6b|ENSMUSG00000024677.14|membrane-spanning 4-domains, subfamily A, member 6B
mm39_v1_chrX_-_100307592_100307608	0.0017916689747197604	GGAGUGU	ENSMUST00000101358.3|Gm614|ENSMUSG00000090141.2|predicted gene 614
mm39_v1_chr4_+_123095297_123095322	0.001604273143320986	GGAGUGU	ENSMUST00000068262.6|Nt5c1a|ENSMUSG00000054958.7|5'-nucleotidase, cytosolic IA
mm39_v1_chr18_+_77032080_77032145	0.001592220994922928	GGAGUGU	ENSMUST00000026485.15|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000150990.9|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2	ENSMUST00000148955.3|Hdhd2|ENSMUSG00000025421.16|haloacid dehalogenase-like hydrolase domain containing 2
mm39_v1_chr10_+_116137277_116137333	0.0014770167733288784	GGAGUGU	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr10_+_94350687_94350784	0.0011630682107955427	GGAGUGU	ENSMUST00000065060.12|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr4_-_141351110_141351151	0.0011504627910008149	GGAGUGU	ENSMUST00000038661.8|Slc25a34|ENSMUSG00000040740.8|solute carrier family 25, member 34
mm39_v1_chr3_-_106455042_106455118	0.0010788747135084009	GGAGUGU	ENSMUST00000039153.14|Cept1|ENSMUSG00000040774.16|choline/ethanolaminephosphotransferase 1	ENSMUST00000148269.2|Cept1|ENSMUSG00000040774.16|choline/ethanolaminephosphotransferase 1	ENSMUST00000068301.11|Cept1|ENSMUSG00000040774.16|choline/ethanolaminephosphotransferase 1
mm39_v1_chr11_-_97171294_97171464	0.0009778414850346196	GGAGUGU	ENSMUST00000167806.8|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive	ENSMUST00000172108.8|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive	ENSMUST00000001480.14|Npepps|ENSMUSG00000001441.14|aminopeptidase puromycin sensitive
mm39_v1_chr2_-_146353911_146353936	0.0005345496616021706	GGAGUGU	ENSMUST00000109986.9|Ralgapa2|ENSMUSG00000037110.21|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm39_v1_chr14_-_63482668_63482714	0.00043802719562637877	GGAGUGU	ENSMUST00000118022.8|Gata4|ENSMUSG00000021944.16|GATA binding protein 4
mm39_v1_chr8_+_12807001_12807028	0.0002812090220621581	GGAGUGU	ENSMUST00000033818.10|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A	ENSMUST00000091237.12|Atp11a|ENSMUSG00000031441.16|ATPase, class VI, type 11A
mm39_v1_chr10_-_42152684_42152759	0.0002808913983433369	GGAGUGU	ENSMUST00000175881.8|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000056974.4|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000105502.8|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000105501.2|Foxo3|ENSMUSG00000048756.12|forkhead box O3
mm39_v1_chr5_-_31337453_31337502	9.209535780433983e-05	GGAGUGU	ENSMUST00000202639.4|Gtf3c2|ENSMUSG00000106864.4|general transcription factor IIIC, polypeptide 2, beta	ENSMUST00000088010.12|Gtf3c2|ENSMUSG00000106864.4|general transcription factor IIIC, polypeptide 2, beta
mm39_v1_chr2_-_173118315_173118336	5.2803450445736215e-05	GGAGUGU	ENSMUST00000036248.13|Pmepa1|ENSMUSG00000038400.16|prostate transmembrane protein, androgen induced 1
