mm39_v1_chr7_-_144493560_144493606	0.12318060649188528	GGCAGUG	ENSMUST00000093962.5|Ccnd1|ENSMUSG00000070348.6|cyclin D1
mm39_v1_chr18_+_78392969_78392969	0.08748713399725482	GGCAGUG	ENSMUST00000164064.2|Gm6133|ENSMUSG00000090451.2|predicted gene 6133
mm39_v1_chr7_-_25488060_25488135	0.07633091712270089	GGCAGUG	ENSMUST00000002677.11|Axl|ENSMUSG00000002602.17|AXL receptor tyrosine kinase	ENSMUST00000085948.11|Axl|ENSMUSG00000002602.17|AXL receptor tyrosine kinase
mm39_v1_chr1_+_11063678_11063702	0.0748510468685243	GGCAGUG	ENSMUST00000027056.12|Prex2|ENSMUSG00000048960.14|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm39_v1_chr2_-_84481058_84481093	0.07429150091557757	GGCAGUG	ENSMUST00000111670.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111697.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111696.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111678.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111690.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111695.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111677.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111698.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000099941.9|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111676.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111694.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111675.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111689.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111687.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111692.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111685.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111686.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111688.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111693.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1	ENSMUST00000111684.8|Ctnnd1|ENSMUSG00000034101.15|catenin (cadherin associated protein), delta 1
mm39_v1_chr11_-_97913420_97913496	0.06930076267225735	GGCAGUG	ENSMUST00000103144.10|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000017552.13|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000092736.11|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit	ENSMUST00000107562.2|Cacnb1|ENSMUSG00000020882.18|calcium channel, voltage-dependent, beta 1 subunit
mm39_v1_chr13_-_29137673_29137696	0.06680041877167986	GGCAGUG	ENSMUST00000067230.6|Sox4|ENSMUSG00000076431.5|SRY (sex determining region Y)-box 4
mm39_v1_chr1_+_91468409_91468485	0.06392306025774175	GGCAGUG	ENSMUST00000027538.9|Asb1|ENSMUSG00000026311.17|ankyrin repeat and SOCS box-containing 1	ENSMUST00000190484.7|Asb1|ENSMUSG00000026311.17|ankyrin repeat and SOCS box-containing 1	ENSMUST00000186068.2|Asb1|ENSMUSG00000026311.17|ankyrin repeat and SOCS box-containing 1
mm39_v1_chr2_-_156921135_156921196	0.06256799797679172	GGCAGUG	ENSMUST00000069098.7|Soga1|ENSMUSG00000055485.7|suppressor of glucose, autophagy associated 1
mm39_v1_chr12_-_107969853_107969872	0.05426536422031774	GGCAGUG	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr11_+_68979332_68979380	0.05123316643267807	GGCAGUG	ENSMUST00000117780.2|Vamp2|ENSMUSG00000020894.17|vesicle-associated membrane protein 2
mm39_v1_chr15_-_79430942_79430986	0.04964714842637029	GGCAGUG	ENSMUST00000054014.9|Ddx17|ENSMUSG00000055065.8|DEAD box helicase 17	ENSMUST00000229877.2|Ddx17|ENSMUSG00000055065.8|DEAD box helicase 17
mm39_v1_chr16_-_21513317_21513415	0.047810607468435413	GGCAGUG	ENSMUST00000231592.2|2510009E07Rik|ENSMUSG00000043391.11|RIKEN cDNA 2510009E07 gene	ENSMUST00000053336.8|2510009E07Rik|ENSMUSG00000043391.11|RIKEN cDNA 2510009E07 gene
mm39_v1_chr2_+_156681927_156681952	0.04576184629167046	GGCAGUG	ENSMUST00000081335.13|Tgif2|ENSMUSG00000062175.14|TGFB-induced factor homeobox 2
mm39_v1_chr9_+_113760002_113760055	0.045545944548216886	GGCAGUG	ENSMUST00000084885.12|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1	ENSMUST00000009885.14|Ubp1|ENSMUSG00000009741.16|upstream binding protein 1
mm39_v1_chr6_+_47854138_47854138	0.04422293456454956	GGCAGUG	ENSMUST00000061890.8|Zfp282|ENSMUSG00000025821.10|zinc finger protein 282
mm39_v1_chr8_-_61436249_61436353	0.04352762856698914	GGCAGUG	ENSMUST00000004430.14|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000110301.2|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3	ENSMUST00000093490.9|Clcn3|ENSMUSG00000004319.16|chloride channel, voltage-sensitive 3
mm39_v1_chr8_-_58106057_58106074	0.040519944508416755	GGCAGUG	ENSMUST00000034021.12|Galnt7|ENSMUSG00000031608.14|polypeptide N-acetylgalactosaminyltransferase 7
mm39_v1_chr4_-_16013867_16013890	0.04011951963374496	GGCAGUG	ENSMUST00000037198.10|Osgin2|ENSMUSG00000041153.10|oxidative stress induced growth inhibitor family member 2
mm39_v1_chr12_-_87247082_87247228	0.039728554439695814	GGCAGUG	ENSMUST00000037418.7|Tmed8|ENSMUSG00000034111.7|transmembrane p24 trafficking protein 8
mm39_v1_chr4_-_87951565_87951610	0.03862441892473143	GGCAGUG	ENSMUST00000078090.12|Mllt3|ENSMUSG00000028496.18|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
mm39_v1_chr1_+_93731662_93731721	0.03747425729358235	GGCAGUG	ENSMUST00000027505.13|Ing5|ENSMUSG00000026283.14|inhibitor of growth family, member 5
mm39_v1_chr11_-_76400245_76400261	0.03689689007616598	GGCAGUG	ENSMUST00000094012.11|Abr|ENSMUSG00000017631.20|active BCR-related gene
mm39_v1_chr2_+_109747984_109748003	0.03685961862250052	GGCAGUG	ENSMUST00000046548.14|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4	ENSMUST00000111037.3|Lgr4|ENSMUSG00000050199.14|leucine-rich repeat-containing G protein-coupled receptor 4
mm39_v1_chr10_-_112764879_112764919	0.036077963441765205	GGCAGUG	ENSMUST00000099276.4|Atxn7l3b|ENSMUSG00000074748.4|ataxin 7-like 3B
mm39_v1_chr1_-_133728779_133728805	0.03526578120944492	GGCAGUG	ENSMUST00000143567.8|Atp2b4|ENSMUSG00000026463.18|ATPase, Ca++ transporting, plasma membrane 4
mm39_v1_chr1_-_106641940_106642062	0.03501733999103018	GGCAGUG	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr14_-_69969959_69970031	0.0337408805301614	GGCAGUG	ENSMUST00000036381.10|Chmp7|ENSMUSG00000034190.10|charged multivesicular body protein 7
mm39_v1_chr19_+_41921903_41921979	0.03331853129070763	GGCAGUG	ENSMUST00000224258.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000026154.9|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16	ENSMUST00000224896.2|Zdhhc16|ENSMUSG00000025157.9|zinc finger, DHHC domain containing 16
mm39_v1_chr2_-_130480014_130480033	0.03285553601347047	GGCAGUG	ENSMUST00000089561.10|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3	ENSMUST00000110260.8|Lzts3|ENSMUSG00000037703.15|leucine zipper, putative tumor suppressor family member 3
mm39_v1_chr2_-_34803988_34804055	0.03242831765308111	GGCAGUG	ENSMUST00000028232.7|Phf19|ENSMUSG00000026873.10|PHD finger protein 19	ENSMUST00000202907.2|Phf19|ENSMUSG00000026873.10|PHD finger protein 19
mm39_v1_chrX_+_71006577_71006619	0.032272870991629045	GGCAGUG	ENSMUST00000048790.7|Prrg3|ENSMUSG00000033361.14|proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)
mm39_v1_chr6_+_100810566_100810624	0.032127876222030484	GGCAGUG	ENSMUST00000063854.7|Ppp4r2|ENSMUSG00000052144.9|protein phosphatase 4, regulatory subunit 2
mm39_v1_chr11_+_70548022_70548111	0.03191995854107366	GGCAGUG	ENSMUST00000157027.8|Eno3|ENSMUSG00000060600.16|enolase 3, beta muscle	ENSMUST00000072841.12|Eno3|ENSMUSG00000060600.16|enolase 3, beta muscle	ENSMUST00000108548.8|Eno3|ENSMUSG00000060600.16|enolase 3, beta muscle	ENSMUST00000126241.8|Eno3|ENSMUSG00000060600.16|enolase 3, beta muscle
mm39_v1_chr19_+_8919228_8919413	0.031894948057535316	GGCAGUG	ENSMUST00000096240.3|Mta2|ENSMUSG00000071646.10|metastasis-associated gene family, member 2
mm39_v1_chr1_-_37580084_37580128	0.031398421329967334	GGCAGUG	ENSMUST00000151952.8|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr11_+_106167541_106167574	0.031174536070325297	GGCAGUG	ENSMUST00000044462.4|Tcam1|ENSMUSG00000020712.12|testicular cell adhesion molecule 1
mm39_v1_chr1_+_93682621_93682654	0.031156861151753312	GGCAGUG	ENSMUST00000027502.16|Atg4b|ENSMUSG00000026280.18|autophagy related 4B, cysteine peptidase
mm39_v1_chr11_+_119283887_119283926	0.030937518386205724	GGCAGUG	ENSMUST00000093902.12|Rnf213|ENSMUSG00000070327.15|ring finger protein 213	ENSMUST00000131035.10|Rnf213|ENSMUSG00000070327.15|ring finger protein 213
mm39_v1_chr14_-_47059694_47059743	0.03015324963739134	GGCAGUG	ENSMUST00000111817.8|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta	ENSMUST00000079314.12|Gmfb|ENSMUSG00000062014.14|glia maturation factor, beta
mm39_v1_chr1_-_165762469_165762605	0.029440970207999042	GGCAGUG	ENSMUST00000069609.12|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111427.9|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1	ENSMUST00000111426.11|Pou2f1|ENSMUSG00000026565.19|POU domain, class 2, transcription factor 1
mm39_v1_chr7_-_121306476_121306685	0.029363977897397944	GGCAGUG	ENSMUST00000046929.7|Usp31|ENSMUSG00000063317.8|ubiquitin specific peptidase 31
mm39_v1_chr9_-_119151428_119151517	0.029269589352346498	GGCAGUG	ENSMUST00000040853.11|Oxsr1|ENSMUSG00000036737.13|oxidative-stress responsive 1
mm39_v1_chr18_+_73706115_73706115	0.029019742223087903	GGCAGUG	ENSMUST00000091852.5|Mex3c|ENSMUSG00000037253.9|mex3 RNA binding family member C
mm39_v1_chr18_-_77652820_77652858	0.028920763571884896	GGCAGUG	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr19_-_6899173_6899208	0.028819088407419743	GGCAGUG	ENSMUST00000025906.12|Esrra|ENSMUSG00000024955.16|estrogen related receptor, alpha	ENSMUST00000239322.2|Esrra|ENSMUSG00000024955.16|estrogen related receptor, alpha
mm39_v1_chr1_-_144124871_144124980	0.02829925510397092	GGCAGUG	ENSMUST00000189061.7|Rgs1|ENSMUSG00000026358.14|regulator of G-protein signaling 1
mm39_v1_chr17_+_29020064_29020108	0.02799877356923116	GGCAGUG	ENSMUST00000004985.11|Brpf3|ENSMUSG00000063952.17|bromodomain and PHD finger containing, 3
mm39_v1_chr15_+_30172716_30172748	0.02765226990246748	GGCAGUG	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr10_+_11157047_11157103	0.027470572699798065	GGCAGUG	ENSMUST00000129456.8|Fbxo30|ENSMUSG00000047648.14|F-box protein 30
mm39_v1_chr11_+_94881861_94881916	0.02704396114289382	GGCAGUG	ENSMUST00000038696.12|Ppp1r9b|ENSMUSG00000038976.13|protein phosphatase 1, regulatory subunit 9B
mm39_v1_chr14_+_20344765_20344814	0.02654763229832443	GGCAGUG	ENSMUST00000223663.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000022343.6|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000224066.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000223941.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13	ENSMUST00000224311.2|Nudt13|ENSMUSG00000021809.11|nudix (nucleoside diphosphate linked moiety X)-type motif 13
mm39_v1_chr1_-_132953068_132953154	0.026406732390438416	GGCAGUG	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr3_+_129326004_129326089	0.02637357316615787	GGCAGUG	ENSMUST00000199910.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000197070.5|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)	ENSMUST00000071402.7|Elovl6|ENSMUSG00000041220.11|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm39_v1_chr13_+_54519161_54519173	0.0260226093122958	GGCAGUG	ENSMUST00000026985.9|Cplx2|ENSMUSG00000025867.9|complexin 2
mm39_v1_chr12_+_32870334_32870360	0.025968793300040437	GGCAGUG	ENSMUST00000020886.9|Nampt|ENSMUSG00000020572.9|nicotinamide phosphoribosyltransferase
mm39_v1_chr11_-_74787877_74787920	0.02568207258503444	GGCAGUG	ENSMUST00000057631.12|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2	ENSMUST00000081799.6|Sgsm2|ENSMUSG00000038351.15|small G protein signaling modulator 2
mm39_v1_chr10_+_128247598_128247627	0.02531399084851965	GGCAGUG	ENSMUST00000096386.13|Rnf41|ENSMUSG00000025373.15|ring finger protein 41
mm39_v1_chr9_-_43017249_43017322	0.025279637316944565	GGCAGUG	ENSMUST00000165665.9|Arhgef12|ENSMUSG00000059495.15|Rho guanine nucleotide exchange factor (GEF) 12
mm39_v1_chr9_+_109704609_109704684	0.023707461534369416	GGCAGUG	ENSMUST00000094324.8|Cdc25a|ENSMUSG00000032477.15|cell division cycle 25A
mm39_v1_chr9_-_100453102_100453178	0.023617993016910036	GGCAGUG	ENSMUST00000093792.4|Slc35g2|ENSMUSG00000070287.4|solute carrier family 35, member G2
mm39_v1_chr9_+_96078340_96078406	0.023542904068464165	GGCAGUG	ENSMUST00000034982.16|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000188008.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000188750.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2	ENSMUST00000185644.7|Tfdp2|ENSMUSG00000032411.16|transcription factor Dp 2
mm39_v1_chr4_-_136563154_136563299	0.023244711169642485	GGCAGUG	ENSMUST00000105846.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000059287.14|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000105845.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2
mm39_v1_chr1_+_43137852_43137871	0.0231651708962689	GGCAGUG	ENSMUST00000010434.8|AI597479|ENSMUSG00000010290.8|expressed sequence AI597479
mm39_v1_chr11_+_105927698_105927716	0.022846505674827794	GGCAGUG	ENSMUST00000058438.9|Dcaf7|ENSMUSG00000049354.9|DDB1 and CUL4 associated factor 7
mm39_v1_chr4_+_106173384_106173439	0.02237537270924084	GGCAGUG	ENSMUST00000165709.8|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24	ENSMUST00000094933.5|Usp24|ENSMUSG00000028514.16|ubiquitin specific peptidase 24
mm39_v1_chr1_-_58625431_58625482	0.02162714776577915	GGCAGUG	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr5_-_115236354_115236354	0.021480322339573518	GGCAGUG	ENSMUST00000100848.3|Gm10401|ENSMUSG00000072693.3|predicted gene 10401
mm39_v1_chrX_-_94488394_94488478	0.021266227722233563	GGCAGUG	ENSMUST00000084535.6|Amer1|ENSMUSG00000050332.8|APC membrane recruitment 1
mm39_v1_chr3_-_95014090_95014208	0.021214848012069985	GGCAGUG	ENSMUST00000005768.8|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	ENSMUST00000107232.9|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	ENSMUST00000107236.9|Pip5k1a|ENSMUSG00000028126.17|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm39_v1_chr5_-_143255713_143255777	0.020876337476501708	GGCAGUG	ENSMUST00000161448.8|Zfp316|ENSMUSG00000046658.17|zinc finger protein 316
mm39_v1_chr17_-_31877703_31877866	0.02074014981267164	GGCAGUG	ENSMUST00000236475.2|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000166526.9|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	ENSMUST00000014684.6|U2af1|ENSMUSG00000061613.14|U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
mm39_v1_chr4_+_59805829_59805914	0.02052762227301753	GGCAGUG	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr6_-_146536025_146536110	0.020419391077378665	GGCAGUG	ENSMUST00000037709.16|Tm7sf3|ENSMUSG00000040234.17|transmembrane 7 superfamily member 3
mm39_v1_chr13_-_8921732_8921945	0.019625458902856472	GGCAGUG	ENSMUST00000054251.13|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000176813.8|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37	ENSMUST00000175958.2|Wdr37|ENSMUSG00000021147.18|WD repeat domain 37
mm39_v1_chr11_+_79482005_79482047	0.01918660120529884	GGCAGUG	ENSMUST00000017783.13|Rab11fip4|ENSMUSG00000017639.14|RAB11 family interacting protein 4 (class II)
mm39_v1_chr11_-_23447866_23447962	0.019174331533166947	GGCAGUG	ENSMUST00000128559.2|Ahsa2|ENSMUSG00000020288.14|AHA1, activator of heat shock protein ATPase 2	ENSMUST00000147157.8|Ahsa2|ENSMUSG00000020288.14|AHA1, activator of heat shock protein ATPase 2	ENSMUST00000109539.8|Ahsa2|ENSMUSG00000020288.14|AHA1, activator of heat shock protein ATPase 2
mm39_v1_chr2_+_28403255_28403338	0.018931494010422704	GGCAGUG	ENSMUST00000028170.15|Ralgds|ENSMUSG00000026821.17|ral guanine nucleotide dissociation stimulator
mm39_v1_chr16_+_91526169_91526272	0.018803029557692762	GGCAGUG	ENSMUST00000114001.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113999.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000064797.12|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000114002.9|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000095909.10|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000056482.14|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113996.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)
mm39_v1_chr11_-_80268800_80268860	0.018021864662321085	GGCAGUG	ENSMUST00000179332.8|5730455P16Rik|ENSMUSG00000057181.16|RIKEN cDNA 5730455P16 gene	ENSMUST00000103225.11|5730455P16Rik|ENSMUSG00000057181.16|RIKEN cDNA 5730455P16 gene	ENSMUST00000134274.2|5730455P16Rik|ENSMUSG00000057181.16|RIKEN cDNA 5730455P16 gene
mm39_v1_chr12_-_51738666_51738738	0.017746866327264417	GGCAGUG	ENSMUST00000013130.15|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3	ENSMUST00000169503.4|Strn3|ENSMUSG00000020954.17|striatin, calmodulin binding protein 3
mm39_v1_chr17_-_52139693_52139706	0.0176693286430669	GGCAGUG	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr2_+_4405769_4405786	0.017624654912103258	GGCAGUG	ENSMUST00000075767.14|Frmd4a|ENSMUSG00000026657.18|FERM domain containing 4A
mm39_v1_chr5_+_122988111_122988228	0.017563224749380137	GGCAGUG	ENSMUST00000031434.8|Rnf34|ENSMUSG00000029474.8|ring finger protein 34	ENSMUST00000198602.2|Rnf34|ENSMUSG00000029474.8|ring finger protein 34
mm39_v1_chr5_-_100822097_100822150	0.01737993749311459	GGCAGUG	ENSMUST00000031262.9|Coq2|ENSMUSG00000029319.9|coenzyme Q2 4-hydroxybenzoate polyprenyltransferase
mm39_v1_chr13_-_30170031_30170048	0.017210832957883067	GGCAGUG	ENSMUST00000102948.11|E2f3|ENSMUSG00000016477.19|E2F transcription factor 3
mm39_v1_chr10_+_128212953_128213024	0.01695579130568128	GGCAGUG	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr14_+_47514368_47514406	0.01692952893933795	GGCAGUG	ENSMUST00000065562.6|Socs4|ENSMUSG00000048379.10|suppressor of cytokine signaling 4
mm39_v1_chr2_+_58991352_58991398	0.01692644789129021	GGCAGUG	ENSMUST00000037903.15|Pkp4|ENSMUSG00000026991.21|plakophilin 4
mm39_v1_chrX_+_98179725_98179744	0.016923079540324806	GGCAGUG	ENSMUST00000052839.7|Efnb1|ENSMUSG00000031217.9|ephrin B1
mm39_v1_chr11_-_49603501_49603555	0.016683981192685125	GGCAGUG	ENSMUST00000020624.7|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6	ENSMUST00000145353.8|Cnot6|ENSMUSG00000020362.14|CCR4-NOT transcription complex, subunit 6
mm39_v1_chr1_+_75498162_75498247	0.01665252296697287	GGCAGUG	ENSMUST00000027414.16|Stk11ip|ENSMUSG00000026213.16|serine/threonine kinase 11 interacting protein	ENSMUST00000113553.2|Stk11ip|ENSMUSG00000026213.16|serine/threonine kinase 11 interacting protein
mm39_v1_chr1_-_151965876_151965918	0.01653443662827931	GGCAGUG	ENSMUST00000044581.14|1700025G04Rik|ENSMUSG00000032666.17|RIKEN cDNA 1700025G04 gene
mm39_v1_chr10_+_126914755_126914787	0.016283833003799555	GGCAGUG	ENSMUST00000039259.7|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	ENSMUST00000217941.2|Agap2|ENSMUSG00000025422.11|ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
mm39_v1_chr9_-_70564403_70564470	0.016252242444263862	GGCAGUG	ENSMUST00000213380.2|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2	ENSMUST00000049031.6|Mindy2|ENSMUSG00000042444.11|MINDY lysine 48 deubiquitinase 2
mm39_v1_chr2_-_63014622_63014681	0.016140352499846106	GGCAGUG	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr6_+_29768470_29768541	0.0159905732423042	GGCAGUG	ENSMUST00000102995.9|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2	ENSMUST00000115242.9|Ahcyl2|ENSMUSG00000029772.18|S-adenosylhomocysteine hydrolase-like 2
mm39_v1_chr18_+_86413077_86413094	0.015948924101635554	GGCAGUG	ENSMUST00000058829.4|Neto1|ENSMUSG00000050321.4|neuropilin (NRP) and tolloid (TLL)-like 1
mm39_v1_chr1_-_161704224_161704251	0.015387052541993065	GGCAGUG	ENSMUST00000048377.11|Suco|ENSMUSG00000040297.13|SUN domain containing ossification factor
mm39_v1_chr9_+_68561042_68561068	0.014920428148249934	GGCAGUG	ENSMUST00000034766.14|Rora|ENSMUSG00000032238.18|RAR-related orphan receptor alpha
mm39_v1_chr7_+_79836581_79836651	0.014835111891988263	GGCAGUG	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chr7_-_74204222_74204436	0.014791211941669732	GGCAGUG	ENSMUST00000134539.2|Slco3a1|ENSMUSG00000025790.15|solute carrier organic anion transporter family, member 3a1	ENSMUST00000026897.14|Slco3a1|ENSMUSG00000025790.15|solute carrier organic anion transporter family, member 3a1	ENSMUST00000098371.9|Slco3a1|ENSMUSG00000025790.15|solute carrier organic anion transporter family, member 3a1
mm39_v1_chr19_+_30007910_30007928	0.014689050171920676	GGCAGUG	ENSMUST00000025739.14|Uhrf2|ENSMUSG00000024817.14|ubiquitin-like, containing PHD and RING finger domains 2
mm39_v1_chr1_-_36484328_36484352	0.014654638844923771	GGCAGUG	ENSMUST00000125304.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like	ENSMUST00000115011.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like
mm39_v1_chr9_+_108820846_108821046	0.014448053398174761	GGCAGUG	ENSMUST00000198140.5|Pfkfb4|ENSMUSG00000025648.19|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	ENSMUST00000051873.15|Pfkfb4|ENSMUSG00000025648.19|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
mm39_v1_chr3_-_138195133_138195276	0.014349946065654068	GGCAGUG	ENSMUST00000197531.2|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1	ENSMUST00000029804.13|Metap1|ENSMUSG00000005813.13|methionyl aminopeptidase 1
mm39_v1_chr9_-_64160899_64160918	0.014346288370777803	GGCAGUG	ENSMUST00000005066.9|Map2k1|ENSMUSG00000004936.9|mitogen-activated protein kinase kinase 1
mm39_v1_chr12_+_102710008_102710038	0.014224301714976958	GGCAGUG	ENSMUST00000057416.8|Tmem251|ENSMUSG00000046675.8|transmembrane protein 251
mm39_v1_chr17_+_46513666_46513782	0.014177700658159884	GGCAGUG	ENSMUST00000087031.7|Xpo5|ENSMUSG00000067150.7|exportin 5
mm39_v1_chr2_+_10377237_10377309	0.014171648057404668	GGCAGUG	ENSMUST00000114864.9|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2	ENSMUST00000116594.9|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2	ENSMUST00000041105.7|Sfmbt2|ENSMUSG00000061186.16|Scm-like with four mbt domains 2
mm39_v1_chr9_-_50639230_50639308	0.014146585387615915	GGCAGUG	ENSMUST00000118707.2|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1	ENSMUST00000034566.15|Dixdc1|ENSMUSG00000032064.18|DIX domain containing 1
mm39_v1_chr10_+_61516078_61516146	0.0139493196571531	GGCAGUG	ENSMUST00000220372.2|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A	ENSMUST00000020285.10|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A	ENSMUST00000219506.2|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A	ENSMUST00000218474.2|Sar1a|ENSMUSG00000020088.11|secretion associated Ras related GTPase 1A
mm39_v1_chr17_-_23864237_23864267	0.013453648267890125	GGCAGUG	ENSMUST00000024696.9|Mmp25|ENSMUSG00000023903.9|matrix metallopeptidase 25
mm39_v1_chr3_+_14643669_14643756	0.013420107147361018	GGCAGUG	ENSMUST00000029069.13|E2f5|ENSMUSG00000027552.15|E2F transcription factor 5	ENSMUST00000165922.3|E2f5|ENSMUSG00000027552.15|E2F transcription factor 5
mm39_v1_chr2_-_25873189_25873304	0.013311542760406038	GGCAGUG	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr4_-_132649798_132649874	0.013191806528509388	GGCAGUG	ENSMUST00000097856.10|Fam76a|ENSMUSG00000028878.12|family with sequence similarity 76, member A	ENSMUST00000030696.11|Fam76a|ENSMUSG00000028878.12|family with sequence similarity 76, member A
mm39_v1_chr7_-_99508117_99508184	0.013184385881604744	GGCAGUG	ENSMUST00000209032.2|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)	ENSMUST00000036274.8|Spcs2|ENSMUSG00000035227.8|signal peptidase complex subunit 2 homolog (S. cerevisiae)
mm39_v1_chr1_-_170978157_170978180	0.013141570825025333	GGCAGUG	ENSMUST00000155798.2|Sdhc|ENSMUSG00000058076.13|succinate dehydrogenase complex, subunit C, integral membrane protein	ENSMUST00000081560.5|Sdhc|ENSMUSG00000058076.13|succinate dehydrogenase complex, subunit C, integral membrane protein	ENSMUST00000111336.10|Sdhc|ENSMUSG00000058076.13|succinate dehydrogenase complex, subunit C, integral membrane protein
mm39_v1_chr11_+_95304903_95305069	0.013098841287167618	GGCAGUG	ENSMUST00000107724.9|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000150884.8|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000107722.8|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein	ENSMUST00000127713.2|Spop|ENSMUSG00000057522.16|speckle-type BTB/POZ protein
mm39_v1_chr11_-_118309844_118309912	0.013079838170226819	GGCAGUG	ENSMUST00000092378.10|Cant1|ENSMUSG00000025575.15|calcium activated nucleotidase 1	ENSMUST00000106289.9|Cant1|ENSMUSG00000025575.15|calcium activated nucleotidase 1	ENSMUST00000106288.8|Cant1|ENSMUSG00000025575.15|calcium activated nucleotidase 1	ENSMUST00000106287.8|Cant1|ENSMUSG00000025575.15|calcium activated nucleotidase 1	ENSMUST00000017620.10|Cant1|ENSMUSG00000025575.15|calcium activated nucleotidase 1
mm39_v1_chr6_-_87788753_87788784	0.013046228578765395	GGCAGUG	ENSMUST00000078647.11|Rab43|ENSMUSG00000030055.17|RAB43, member RAS oncogene family	ENSMUST00000032135.6|Rab43|ENSMUSG00000030055.17|RAB43, member RAS oncogene family
mm39_v1_chr4_+_99786611_99786729	0.012827564033798582	GGCAGUG	ENSMUST00000058351.16|Pgm1|ENSMUSG00000025791.19|phosphoglucomutase 1
mm39_v1_chr12_+_72807985_72808090	0.011832340252477964	GGCAGUG	ENSMUST00000021514.10|Ppm1a|ENSMUSG00000021096.12|protein phosphatase 1A, magnesium dependent, alpha isoform
mm39_v1_chr8_+_4216556_4216739	0.011773122134508839	GGCAGUG	ENSMUST00000239400.2|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000177053.8|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176149.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176072.9|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like	ENSMUST00000176825.3|Evi5l|ENSMUSG00000011832.17|ecotropic viral integration site 5 like
mm39_v1_chr11_-_107361525_107361554	0.011618435341850763	GGCAGUG	ENSMUST00000103064.10|Pitpnc1|ENSMUSG00000040430.19|phosphatidylinositol transfer protein, cytoplasmic 1
mm39_v1_chr2_-_84508385_84508462	0.011602618236026156	GGCAGUG	ENSMUST00000189772.2|Gm28635|ENSMUSG00000101645.2|predicted gene 28635	ENSMUST00000053664.9|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2	ENSMUST00000111664.8|Tmx2|ENSMUSG00000050043.17|thioredoxin-related transmembrane protein 2
mm39_v1_chr13_+_55357585_55357602	0.0113230498374291	GGCAGUG	ENSMUST00000224973.2|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1	ENSMUST00000099490.3|Nsd1|ENSMUSG00000021488.9|nuclear receptor-binding SET-domain protein 1
mm39_v1_chr10_+_84753480_84753520	0.011203150117223695	GGCAGUG	ENSMUST00000038523.15|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000214693.2|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B	ENSMUST00000095385.5|Ric8b|ENSMUSG00000035620.16|RIC8 guanine nucleotide exchange factor B
mm39_v1_chr6_-_82916655_82916750	0.01091704456591953	GGCAGUG	ENSMUST00000000641.15|Sema4f|ENSMUSG00000000627.16|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm39_v1_chr7_-_144107401_144107533	0.010886836131079778	GGCAGUG	ENSMUST00000168134.10|Ppfia1|ENSMUSG00000037519.18|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
mm39_v1_chr10_-_110845860_110845927	0.010876814977840658	GGCAGUG	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr2_+_155223728_155223804	0.010853875742950526	GGCAGUG	ENSMUST00000043237.14|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2	ENSMUST00000174685.8|Trp53inp2|ENSMUSG00000038375.16|transformation related protein 53 inducible nuclear protein 2
mm39_v1_chr1_-_189902868_189902942	0.010737383957439358	GGCAGUG	ENSMUST00000177288.4|Prox1|ENSMUSG00000010175.14|prospero homeobox 1	ENSMUST00000175916.8|Prox1|ENSMUSG00000010175.14|prospero homeobox 1
mm39_v1_chr7_-_130148984_130149141	0.010429189305470406	GGCAGUG	ENSMUST00000160289.9|Nsmce4a|ENSMUSG00000040331.17|NSE4 homolog A, SMC5-SMC6 complex component
mm39_v1_chr5_-_114582097_114582121	0.010370763726171687	GGCAGUG	ENSMUST00000031560.14|Mmab|ENSMUSG00000029575.18|methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
mm39_v1_chr7_-_119319965_119320026	0.0102857306452432	GGCAGUG	ENSMUST00000033236.9|Thumpd1|ENSMUSG00000030942.9|THUMP domain containing 1
mm39_v1_chr6_-_31540913_31540924	0.01014870162201333	GGCAGUG	ENSMUST00000026698.8|Podxl|ENSMUSG00000025608.10|podocalyxin-like
mm39_v1_chr5_-_123711098_123711103	0.009770866684431983	GGCAGUG	ENSMUST00000031388.13|Vps33a|ENSMUSG00000029434.13|VPS33A CORVET/HOPS core subunit
mm39_v1_chrX_+_141464393_141464425	0.009686111447077712	GGCAGUG	ENSMUST00000112889.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000101198.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000112891.8|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164	ENSMUST00000087333.9|Tmem164|ENSMUSG00000047045.18|transmembrane protein 164
mm39_v1_chr19_+_16110176_16110285	0.009518816150858924	GGCAGUG	ENSMUST00000025541.6|Gnaq|ENSMUSG00000024639.6|guanine nucleotide binding protein, alpha q polypeptide
mm39_v1_chr18_+_14916295_14916316	0.009503156554198054	GGCAGUG	ENSMUST00000234789.2|Taf4b|ENSMUSG00000054321.8|TATA-box binding protein associated factor 4b	ENSMUST00000169862.2|Taf4b|ENSMUSG00000054321.8|TATA-box binding protein associated factor 4b
mm39_v1_chr3_-_144275897_144275989	0.0094911890242724	GGCAGUG	ENSMUST00000043325.9|Hs2st1|ENSMUSG00000040151.10|heparan sulfate 2-O-sulfotransferase 1
mm39_v1_chr9_+_21249118_21249155	0.009320866162482662	GGCAGUG	ENSMUST00000034697.8|Slc44a2|ENSMUSG00000057193.9|solute carrier family 44, member 2
mm39_v1_chr5_-_114046746_114046819	0.00917029053903714	GGCAGUG	ENSMUST00000004646.13|Coro1c|ENSMUSG00000004530.13|coronin, actin binding protein 1C
mm39_v1_chr4_+_48124902_48124938	0.009087211320414549	GGCAGUG	ENSMUST00000107721.8|Stx17|ENSMUSG00000061455.14|syntaxin 17	ENSMUST00000153502.8|Stx17|ENSMUSG00000061455.14|syntaxin 17	ENSMUST00000107720.9|Stx17|ENSMUSG00000061455.14|syntaxin 17	ENSMUST00000064765.6|Stx17|ENSMUSG00000061455.14|syntaxin 17
mm39_v1_chr3_-_138780937_138781008	0.009015938881951353	GGCAGUG	ENSMUST00000098574.9|Rap1gds1|ENSMUSG00000028149.13|RAP1, GTP-GDP dissociation stimulator 1
mm39_v1_chr5_-_67585137_67585157	0.00901199631602471	GGCAGUG	ENSMUST00000169190.5|Bend4|ENSMUSG00000092060.5|BEN domain containing 4
mm39_v1_chr19_-_41252370_41252447	0.008796470498550538	GGCAGUG	ENSMUST00000237871.2|Tm9sf3|ENSMUSG00000025016.12|transmembrane 9 superfamily member 3	ENSMUST00000025989.10|Tm9sf3|ENSMUSG00000025016.12|transmembrane 9 superfamily member 3
mm39_v1_chr7_+_125871761_125871791	0.008780544123866571	GGCAGUG	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr2_+_180609008_180609099	0.008741640085420855	GGCAGUG	ENSMUST00000108862.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000029092.13|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000108861.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000108860.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1	ENSMUST00000108859.8|Arfgap1|ENSMUSG00000027575.20|ADP-ribosylation factor GTPase activating protein 1
mm39_v1_chr19_+_37184927_37184988	0.008711586301009095	GGCAGUG	ENSMUST00000024078.15|Marchf5|ENSMUSG00000023307.15|membrane associated ring-CH-type finger 5	ENSMUST00000112391.8|Marchf5|ENSMUSG00000023307.15|membrane associated ring-CH-type finger 5
mm39_v1_chr6_-_119394634_119394668	0.008522575618084843	GGCAGUG	ENSMUST00000032272.13|Adipor2|ENSMUSG00000030168.14|adiponectin receptor 2
mm39_v1_chr19_-_4978238_4978315	0.008432731475716946	GGCAGUG	ENSMUST00000237394.2|Dpp3|ENSMUSG00000063904.5|dipeptidylpeptidase 3	ENSMUST00000025851.4|Dpp3|ENSMUSG00000063904.5|dipeptidylpeptidase 3
mm39_v1_chr11_-_97944239_97944293	0.008304378861630202	GGCAGUG	ENSMUST00000017544.9|Stac2|ENSMUSG00000017400.11|SH3 and cysteine rich domain 2
mm39_v1_chr1_-_36597430_36597446	0.008241837898219353	GGCAGUG	ENSMUST00000191677.6|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	ENSMUST00000114991.8|Sema4c|ENSMUSG00000026121.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm39_v1_chr1_-_75168567_75168641	0.008197748211640148	GGCAGUG	ENSMUST00000040689.15|Atg9a|ENSMUSG00000033124.17|autophagy related 9A	ENSMUST00000189702.7|Atg9a|ENSMUSG00000033124.17|autophagy related 9A
mm39_v1_chr11_-_7163897_7163937	0.007715950819673432	GGCAGUG	ENSMUST00000020702.11|Igfbp3|ENSMUSG00000020427.12|insulin-like growth factor binding protein 3	ENSMUST00000135887.3|Igfbp3|ENSMUSG00000020427.12|insulin-like growth factor binding protein 3
mm39_v1_chr2_-_136958544_136958564	0.007564507862675257	GGCAGUG	ENSMUST00000028735.8|Jag1|ENSMUSG00000027276.8|jagged 1
mm39_v1_chr4_-_24800890_24800890	0.007530200729879323	GGCAGUG	ENSMUST00000108214.9|Klhl32|ENSMUSG00000040387.17|kelch-like 32
mm39_v1_chr14_+_49303952_49304045	0.007518827928461867	GGCAGUG	ENSMUST00000037473.6|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit	ENSMUST00000228238.2|Ap5m1|ENSMUSG00000036291.7|adaptor-related protein complex 5, mu 1 subunit
mm39_v1_chr2_-_26393826_26393849	0.0075020085942646905	GGCAGUG	ENSMUST00000028288.5|Notch1|ENSMUSG00000026923.16|notch 1
mm39_v1_chr17_-_43978056_43978105	0.006991999615649717	GGCAGUG	ENSMUST00000024705.6|Slc25a27|ENSMUSG00000023912.11|solute carrier family 25, member 27
mm39_v1_chr2_+_32477069_32477145	0.006923897663184624	GGCAGUG	ENSMUST00000102818.11|St6galnac4|ENSMUSG00000079442.13|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
mm39_v1_chr6_+_38410848_38410901	0.006911649565881785	GGCAGUG	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr12_+_108758871_108758914	0.006888211925057357	GGCAGUG	ENSMUST00000021692.9|Yy1|ENSMUSG00000021264.13|YY1 transcription factor
mm39_v1_chrX_-_142716200_142716307	0.006837989069176991	GGCAGUG	ENSMUST00000112851.8|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000112856.3|Dcx|ENSMUSG00000031285.15|doublecortin	ENSMUST00000033642.10|Dcx|ENSMUSG00000031285.15|doublecortin
mm39_v1_chr7_-_97827461_97827481	0.006751986026042448	GGCAGUG	ENSMUST00000040971.14|Capn5|ENSMUSG00000035547.15|calpain 5
mm39_v1_chr11_+_101066867_101066867	0.006709691104016042	GGCAGUG	ENSMUST00000103109.4|Cntnap1|ENSMUSG00000017167.7|contactin associated protein-like 1
mm39_v1_chr11_+_4936824_4936894	0.0066283611877170955	GGCAGUG	ENSMUST00000109897.8|Ap1b1|ENSMUSG00000009090.18|adaptor protein complex AP-1, beta 1 subunit	ENSMUST00000009234.16|Ap1b1|ENSMUSG00000009090.18|adaptor protein complex AP-1, beta 1 subunit
mm39_v1_chr14_+_34542053_34542108	0.006482959336222375	GGCAGUG	ENSMUST00000043349.7|Grid1|ENSMUSG00000041078.8|glutamate receptor, ionotropic, delta 1
mm39_v1_chr9_+_108815078_108815078	0.0064709598981917025	GGCAGUG	ENSMUST00000052724.5|Ucn2|ENSMUSG00000049699.5|urocortin 2
mm39_v1_chr15_+_103148824_103148921	0.0063771353251208885	GGCAGUG	ENSMUST00000036004.16|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000087351.9|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1	ENSMUST00000231141.2|Hnrnpa1|ENSMUSG00000046434.17|heterogeneous nuclear ribonucleoprotein A1
mm39_v1_chr9_-_45866550_45866589	0.006319434985806121	GGCAGUG	ENSMUST00000038488.17|Sidt2|ENSMUSG00000034908.17|SID1 transmembrane family, member 2
mm39_v1_chr19_-_6178237_6178334	0.006054159608805184	GGCAGUG	ENSMUST00000025702.14|Snx15|ENSMUSG00000024787.15|sorting nexin 15
mm39_v1_chr4_-_141518202_141518252	0.006045382401729905	GGCAGUG	ENSMUST00000038014.11|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16	ENSMUST00000153880.2|Dnajc16|ENSMUSG00000040697.11|DnaJ heat shock protein family (Hsp40) member C16
mm39_v1_chr4_+_123811212_123811304	0.005748960389416782	GGCAGUG	ENSMUST00000030399.7|Rragc|ENSMUSG00000028646.17|Ras-related GTP binding C
mm39_v1_chr15_+_82159398_82159482	0.005632433244781113	GGCAGUG	ENSMUST00000023095.14|Septin3|ENSMUSG00000022456.19|septin 3	ENSMUST00000230365.2|Septin3|ENSMUSG00000022456.19|septin 3
mm39_v1_chr4_+_11191726_11191790	0.005564661086574774	GGCAGUG	ENSMUST00000029866.16|Ccne2|ENSMUSG00000028212.17|cyclin E2	ENSMUST00000108324.4|Ccne2|ENSMUSG00000028212.17|cyclin E2
mm39_v1_chr2_+_154975419_154975479	0.005455689996554798	GGCAGUG	ENSMUST00000029126.15|Itch|ENSMUSG00000027598.17|itchy, E3 ubiquitin protein ligase	ENSMUST00000109685.8|Itch|ENSMUSG00000027598.17|itchy, E3 ubiquitin protein ligase
mm39_v1_chr1_-_9818601_9818676	0.0054221000967008244	GGCAGUG	ENSMUST00000057438.7|Vcpip1|ENSMUSG00000045210.9|valosin containing protein (p97)/p47 complex interacting protein 1
mm39_v1_chr15_-_10713621_10713632	0.005373161672852931	GGCAGUG	ENSMUST00000090339.11|Rai14|ENSMUSG00000022246.15|retinoic acid induced 14
mm39_v1_chr4_+_120711974_120712041	0.005313270309715358	GGCAGUG	ENSMUST00000071093.9|Rims3|ENSMUSG00000032890.18|regulating synaptic membrane exocytosis 3
mm39_v1_chr1_+_180553569_180553669	0.00515807310707096	GGCAGUG	ENSMUST00000027780.6|Acbd3|ENSMUSG00000026499.6|acyl-Coenzyme A binding domain containing 3
mm39_v1_chr2_+_129642371_129642493	0.005101633040906942	GGCAGUG	ENSMUST00000165413.9|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35	ENSMUST00000166282.3|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35
mm39_v1_chr12_-_101785307_101785321	0.005099682920356621	GGCAGUG	ENSMUST00000021603.9|Fbln5|ENSMUSG00000021186.10|fibulin 5
mm39_v1_chr14_-_72947422_72947467	0.0049906745318285765	GGCAGUG	ENSMUST00000089017.12|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chr5_+_30745447_30745514	0.004875717814288648	GGCAGUG	ENSMUST00000066295.5|Kcnk3|ENSMUSG00000049265.9|potassium channel, subfamily K, member 3
mm39_v1_chrX_+_55391749_55391775	0.004768904572678617	GGCAGUG	ENSMUST00000101560.4|Zfp449|ENSMUSG00000073176.5|zinc finger protein 449
mm39_v1_chr8_+_125519751_125519831	0.00473161843592118	GGCAGUG	ENSMUST00000041106.9|Trim67|ENSMUSG00000036913.16|tripartite motif-containing 67	ENSMUST00000167588.9|Trim67|ENSMUSG00000036913.16|tripartite motif-containing 67
mm39_v1_chr9_-_106315518_106315591	0.004673911924923669	GGCAGUG	ENSMUST00000024031.13|Acy1|ENSMUSG00000023262.14|aminoacylase 1	ENSMUST00000190972.3|Acy1|ENSMUSG00000023262.14|aminoacylase 1
mm39_v1_chr15_-_98729333_98729402	0.004579999825352015	GGCAGUG	ENSMUST00000168846.3|Prkag1|ENSMUSG00000067713.8|protein kinase, AMP-activated, gamma 1 non-catalytic subunit
mm39_v1_chr11_+_75541324_75541370	0.004457405884515578	GGCAGUG	ENSMUST00000102505.10|Myo1c|ENSMUSG00000017774.20|myosin IC
mm39_v1_chr3_+_69224189_69224202	0.004420117320292047	GGCAGUG	ENSMUST00000029355.9|Ppm1l|ENSMUSG00000027784.11|protein phosphatase 1 (formerly 2C)-like
mm39_v1_chrX_-_12539778_12539907	0.004267275536172504	GGCAGUG	ENSMUST00000060108.7|1810030O07Rik|ENSMUSG00000044148.7|RIKEN cDNA 1810030O07 gene
mm39_v1_chr11_+_5905693_5905822	0.004177844020579693	GGCAGUG	ENSMUST00000002818.9|Ykt6|ENSMUSG00000002741.10|YKT6 v-SNARE homolog (S. cerevisiae)
mm39_v1_chr3_-_41037427_41037481	0.004158029530586721	GGCAGUG	ENSMUST00000058578.8|Pgrmc2|ENSMUSG00000049940.8|progesterone receptor membrane component 2
mm39_v1_chr2_-_57004933_57005050	0.00401839906737477	GGCAGUG	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr8_-_106553822_106553982	0.003881396337551379	GGCAGUG	ENSMUST00000239468.2|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10	ENSMUST00000041400.6|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10
mm39_v1_chr1_+_75358758_75358793	0.003877237939768177	GGCAGUG	ENSMUST00000148515.8|Speg|ENSMUSG00000026207.17|SPEG complex locus	ENSMUST00000113590.8|Speg|ENSMUSG00000026207.17|SPEG complex locus
mm39_v1_chr3_-_108819003_108819062	0.0038314459218242165	GGCAGUG	ENSMUST00000029480.9|Prpf38b|ENSMUSG00000027881.15|PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
mm39_v1_chr15_+_66449385_66449487	0.003416645456280244	GGCAGUG	ENSMUST00000230882.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000048188.10|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000230948.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1	ENSMUST00000229160.2|Phf20l1|ENSMUSG00000072501.6|PHD finger protein 20-like 1
mm39_v1_chr16_+_20367327_20367426	0.0033742057661519864	GGCAGUG	ENSMUST00000003319.6|Abcf3|ENSMUSG00000003234.17|ATP-binding cassette, sub-family F (GCN20), member 3	ENSMUST00000232680.2|Abcf3|ENSMUSG00000003234.17|ATP-binding cassette, sub-family F (GCN20), member 3	ENSMUST00000232490.2|Abcf3|ENSMUSG00000003234.17|ATP-binding cassette, sub-family F (GCN20), member 3
mm39_v1_chr3_-_90416757_90416813	0.0032967483253956566	GGCAGUG	ENSMUST00000107343.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000001043.14|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107344.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000076639.11|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107346.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000146740.8|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000107342.2|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1	ENSMUST00000049937.13|Chtop|ENSMUSG00000001017.16|chromatin target of PRMT1
mm39_v1_chr3_-_107425316_107425339	0.00315174450677844	GGCAGUG	ENSMUST00000169449.8|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17	ENSMUST00000029499.15|Slc6a17|ENSMUSG00000027894.15|solute carrier family 6 (neurotransmitter transporter), member 17
mm39_v1_chr15_-_66841465_66841496	0.003054984240428392	GGCAGUG	ENSMUST00000170903.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000166420.8|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000005256.14|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1	ENSMUST00000164070.2|Ndrg1|ENSMUSG00000005125.14|N-myc downstream regulated gene 1
mm39_v1_chr5_+_147367237_147367355	0.002920459619416275	GGCAGUG	ENSMUST00000176600.8|Pan3|ENSMUSG00000029647.16|PAN3 poly(A) specific ribonuclease subunit
mm39_v1_chr8_+_41315419_41315472	0.0028437161314421723	GGCAGUG	ENSMUST00000098816.10|Slc7a2|ENSMUSG00000031596.16|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	ENSMUST00000057784.15|Slc7a2|ENSMUSG00000031596.16|solute carrier family 7 (cationic amino acid transporter, y+ system), member 2
mm39_v1_chr9_+_65816206_65816302	0.0028240841433541572	GGCAGUG	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr19_-_7083094_7083094	0.002674289092484378	GGCAGUG	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chr7_-_113716996_113717023	0.002668215940873692	GGCAGUG	ENSMUST00000069449.7|Rras2|ENSMUSG00000055723.7|related RAS viral (r-ras) oncogene 2
mm39_v1_chr2_-_39080701_39080762	0.0026539850724529505	GGCAGUG	ENSMUST00000142872.2|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion	ENSMUST00000038874.12|Scai|ENSMUSG00000035236.18|suppressor of cancer cell invasion
mm39_v1_chr6_-_39354570_39354612	0.0025724080285292935	GGCAGUG	ENSMUST00000200771.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202204.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202952.2|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202400.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000200969.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000202749.4|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3	ENSMUST00000090243.8|Slc37a3|ENSMUSG00000029924.13|solute carrier family 37 (glycerol-3-phosphate transporter), member 3
mm39_v1_chr18_-_10182007_10182092	0.0025518449954247302	GGCAGUG	ENSMUST00000067947.7|Rock1|ENSMUSG00000024290.10|Rho-associated coiled-coil containing protein kinase 1
mm39_v1_chr7_+_46495256_46495294	0.0024807430779722472	GGCAGUG	ENSMUST00000048209.16|Ldha|ENSMUSG00000063229.16|lactate dehydrogenase A	ENSMUST00000210815.2|Ldha|ENSMUSG00000063229.16|lactate dehydrogenase A	ENSMUST00000125862.8|Ldha|ENSMUSG00000063229.16|lactate dehydrogenase A	ENSMUST00000210968.2|Ldha|ENSMUSG00000063229.16|lactate dehydrogenase A	ENSMUST00000092621.12|Ldha|ENSMUSG00000063229.16|lactate dehydrogenase A	ENSMUST00000210467.2|Ldha|ENSMUSG00000063229.16|lactate dehydrogenase A
mm39_v1_chr16_+_43960183_43960263	0.002462359518501115	GGCAGUG	ENSMUST00000159514.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000161326.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063520.15|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit	ENSMUST00000063542.8|Naa50|ENSMUSG00000022698.18|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm39_v1_chr3_+_107008867_107008883	0.0024410237721868453	GGCAGUG	ENSMUST00000038695.6|Kcna2|ENSMUSG00000040724.6|potassium voltage-gated channel, shaker-related subfamily, member 2
mm39_v1_chr2_+_79538124_79538271	0.0024332167536373858	GGCAGUG	ENSMUST00000090760.9|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C	ENSMUST00000040863.11|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C	ENSMUST00000111780.3|Ppp1r1c|ENSMUSG00000034683.13|protein phosphatase 1, regulatory inhibitor subunit 1C
mm39_v1_chr10_+_94350687_94350784	0.0023900645766144943	GGCAGUG	ENSMUST00000065060.12|Tmcc3|ENSMUSG00000020023.19|transmembrane and coiled coil domains 3
mm39_v1_chr17_-_35178208_35178214	0.0023178986185341034	GGCAGUG	ENSMUST00000172753.2|Hspa1b|ENSMUSG00000090877.4|heat shock protein 1B
mm39_v1_chr12_+_11315868_11315887	0.0022725100999853036	GGCAGUG	ENSMUST00000020931.6|Smc6|ENSMUSG00000020608.8|structural maintenance of chromosomes 6
mm39_v1_chr2_+_20742115_20742152	0.002244071828598301	GGCAGUG	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr9_-_36708569_36708589	0.002120496875056191	GGCAGUG	ENSMUST00000163192.11|Ei24|ENSMUSG00000062762.18|etoposide induced 2.4 mRNA
mm39_v1_chr2_-_156848923_156849074	0.002077019740800979	GGCAGUG	ENSMUST00000146413.8|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component	ENSMUST00000103129.9|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component	ENSMUST00000103130.8|Dsn1|ENSMUSG00000027635.16|DSN1 homolog, MIS12 kinetochore complex component
mm39_v1_chr11_+_69891398_69891465	0.0020094454646867946	GGCAGUG	ENSMUST00000019362.15|Dvl2|ENSMUSG00000020888.17|dishevelled segment polarity protein 2	ENSMUST00000190940.2|Dvl2|ENSMUSG00000020888.17|dishevelled segment polarity protein 2
mm39_v1_chr1_+_75336965_75336997	0.0019148916362613485	GGCAGUG	ENSMUST00000027409.10|Des|ENSMUSG00000026208.10|desmin
mm39_v1_chr2_-_93164812_93164869	0.0018325553007503782	GGCAGUG	ENSMUST00000111265.9|Tspan18|ENSMUSG00000027217.14|tetraspanin 18
mm39_v1_chr19_+_8718777_8718820	0.0018193122006868252	GGCAGUG	ENSMUST00000176381.8|Stx5a|ENSMUSG00000010110.18|syntaxin 5A
mm39_v1_chr3_+_85481416_85481456	0.001805524664266555	GGCAGUG	ENSMUST00000107672.8|Gatb|ENSMUSG00000028085.13|glutamyl-tRNA(Gln) amidotransferase, subunit B	ENSMUST00000127348.8|Gatb|ENSMUSG00000028085.13|glutamyl-tRNA(Gln) amidotransferase, subunit B	ENSMUST00000107674.2|Gatb|ENSMUSG00000028085.13|glutamyl-tRNA(Gln) amidotransferase, subunit B
mm39_v1_chr1_+_42734889_42734937	0.0017080235576752004	GGCAGUG	ENSMUST00000054883.4|Pou3f3|ENSMUSG00000045515.5|POU domain, class 3, transcription factor 3
mm39_v1_chr11_+_75521800_75521902	0.0017052761767921475	GGCAGUG	ENSMUST00000006286.9|Inpp5k|ENSMUSG00000006127.10|inositol polyphosphate 5-phosphatase K
mm39_v1_chr13_+_95833359_95833376	0.0016943131225295046	GGCAGUG	ENSMUST00000022182.5|F2rl2|ENSMUSG00000021675.5|coagulation factor II (thrombin) receptor-like 2
mm39_v1_chr9_+_45029080_45029179	0.0016867444074671468	GGCAGUG	ENSMUST00000170998.9|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta	ENSMUST00000093855.4|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta
mm39_v1_chr18_-_61533434_61533520	0.0016824829627388753	GGCAGUG	ENSMUST00000063307.6|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta	ENSMUST00000075299.13|Ppargc1b|ENSMUSG00000033871.15|peroxisome proliferative activated receptor, gamma, coactivator 1 beta
mm39_v1_chr6_-_119825081_119825129	0.001642422772281268	GGCAGUG	ENSMUST00000183703.8|Erc1|ENSMUSG00000030172.16|ELKS/RAB6-interacting/CAST family member 1	ENSMUST00000183911.8|Erc1|ENSMUSG00000030172.16|ELKS/RAB6-interacting/CAST family member 1
mm39_v1_chr4_-_126647156_126647239	0.0015990609906970314	GGCAGUG	ENSMUST00000030637.14|Ncdn|ENSMUSG00000028833.14|neurochondrin	ENSMUST00000106116.2|Ncdn|ENSMUSG00000028833.14|neurochondrin
mm39_v1_chr9_-_90152759_90152898	0.0015795615801975282	GGCAGUG	ENSMUST00000041767.14|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B	ENSMUST00000128874.3|Tbc1d2b|ENSMUSG00000037410.14|TBC1 domain family, member 2B
mm39_v1_chr13_-_60325170_60325190	0.0015290616999947262	GGCAGUG	ENSMUST00000065086.6|Gas1|ENSMUSG00000052957.9|growth arrest specific 1
mm39_v1_chr7_+_126832215_126832248	0.0014701133289974986	GGCAGUG	ENSMUST00000106312.4|Zfp553|ENSMUSG00000045598.11|zinc finger protein 553
mm39_v1_chr12_+_71062733_71062837	0.0014290437377466208	GGCAGUG	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr5_+_117979899_117979922	0.0013747039329647926	GGCAGUG	ENSMUST00000142742.9|Nos1|ENSMUSG00000029361.19|nitric oxide synthase 1, neuronal
mm39_v1_chr10_+_126814542_126814618	0.0013501960460530116	GGCAGUG	ENSMUST00000105256.10|Ctdsp2|ENSMUSG00000078429.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm39_v1_chr10_+_62816005_62816041	0.001349855046990198	GGCAGUG	ENSMUST00000131718.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000119567.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2	ENSMUST00000122231.8|Rufy2|ENSMUSG00000020070.19|RUN and FYVE domain-containing 2
mm39_v1_chr3_+_95496239_95496264	0.001334042176426556	GGCAGUG	ENSMUST00000177390.8|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like	ENSMUST00000060323.12|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like	ENSMUST00000098861.11|Golph3l|ENSMUSG00000046519.16|golgi phosphoprotein 3-like
mm39_v1_chr11_+_62172283_62172324	0.001225684873456805	GGCAGUG	ENSMUST00000101075.11|Ttc19|ENSMUSG00000042298.19|tetratricopeptide repeat domain 19	ENSMUST00000050646.13|Ttc19|ENSMUSG00000042298.19|tetratricopeptide repeat domain 19
mm39_v1_chr7_-_37927399_37927440	0.0011914635494887252	GGCAGUG	ENSMUST00000098513.6|Plekhf1|ENSMUSG00000074170.6|pleckstrin homology domain containing, family F (with FYVE domain) member 1
mm39_v1_chr8_+_26008773_26008788	0.001141554154955815	GGCAGUG	ENSMUST00000084027.13|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000178276.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1	ENSMUST00000179592.8|Fgfr1|ENSMUSG00000031565.19|fibroblast growth factor receptor 1
mm39_v1_chr5_+_75312939_75312967	0.001074004668647145	GGCAGUG	ENSMUST00000202681.4|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide	ENSMUST00000000476.15|Pdgfra|ENSMUSG00000029231.16|platelet derived growth factor receptor, alpha polypeptide
mm39_v1_chr12_+_75355082_75355096	0.0010524013340673646	GGCAGUG	ENSMUST00000118602.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000118966.8|Rhoj|ENSMUSG00000046768.14|ras homolog family member J	ENSMUST00000055390.6|Rhoj|ENSMUSG00000046768.14|ras homolog family member J
mm39_v1_chr9_+_94551929_94551984	0.0010374003816854113	GGCAGUG	ENSMUST00000033463.10|Slc9a9|ENSMUSG00000031129.10|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm39_v1_chr6_-_136150076_136150146	0.0009728705227450664	GGCAGUG	ENSMUST00000053880.13|Grin2b|ENSMUSG00000030209.15|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm39_v1_chr14_+_5894220_5894254	0.0009101143892951191	GGCAGUG	ENSMUST00000063750.8|Rarb|ENSMUSG00000017491.10|retinoic acid receptor, beta
mm39_v1_chr15_-_98705791_98705813	0.0009044099304702682	GGCAGUG	ENSMUST00000075444.8|Ddn|ENSMUSG00000059213.8|dendrin
mm39_v1_chr3_-_9069745_9069809	0.0007932997251276817	GGCAGUG	ENSMUST00000120143.8|Tpd52|ENSMUSG00000027506.16|tumor protein D52
mm39_v1_chr5_-_137101108_137101131	0.0007535215160062822	GGCAGUG	ENSMUST00000077523.4|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1	ENSMUST00000041388.11|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm39_v1_chr19_-_5974825_5974851	0.0007488030488070195	GGCAGUG	ENSMUST00000055458.6|Cdc42ep2|ENSMUSG00000045664.6|CDC42 effector protein (Rho GTPase binding) 2
mm39_v1_chr12_+_112688597_112688673	0.0006945911411305068	GGCAGUG	ENSMUST00000101018.11|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000092279.7|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000179041.8|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000222711.2|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B
mm39_v1_chr5_-_96309849_96309956	0.0006056839864233063	GGCAGUG	ENSMUST00000155901.8|Cnot6l|ENSMUSG00000034724.19|CCR4-NOT transcription complex, subunit 6-like
mm39_v1_chr14_-_8457069_8457272	0.0005462214037687938	GGCAGUG	ENSMUST00000022257.4|Atxn7|ENSMUSG00000021738.6|ataxin 7
mm39_v1_chr15_-_76702170_76702375	0.0005295658607172882	GGCAGUG	ENSMUST00000175843.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000177026.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000176736.3|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000036176.16|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000176219.9|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000239134.2|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000239003.2|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39	ENSMUST00000077821.10|Arhgap39|ENSMUSG00000033697.17|Rho GTPase activating protein 39
mm39_v1_chr13_+_14238361_14238407	0.000512976260762531	GGCAGUG	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr9_+_74769166_74769203	0.0005026303970723898	GGCAGUG	ENSMUST00000056006.11|Onecut1|ENSMUSG00000043013.11|one cut domain, family member 1
mm39_v1_chr7_+_18810097_18810163	0.0004547285828687544	GGCAGUG	ENSMUST00000032570.14|Dmwd|ENSMUSG00000030410.17|dystrophia myotonica-containing WD repeat motif
mm39_v1_chr11_+_82782938_82782954	0.00044745211935507247	GGCAGUG	ENSMUST00000018988.6|Fndc8|ENSMUSG00000018844.7|fibronectin type III domain containing 8
mm39_v1_chr6_+_4747298_4747354	0.00040359620077738673	GGCAGUG	ENSMUST00000166678.2|Peg10|ENSMUSG00000092035.9|paternally expressed 10	ENSMUST00000176204.8|Peg10|ENSMUSG00000092035.9|paternally expressed 10
mm39_v1_chr4_+_32982981_32983155	0.0004008177259897727	GGCAGUG	ENSMUST00000098190.10|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D	ENSMUST00000029946.14|Rragd|ENSMUSG00000028278.15|Ras-related GTP binding D
mm39_v1_chr6_+_103487973_103488039	0.0003599801165294038	GGCAGUG	ENSMUST00000066905.9|Chl1|ENSMUSG00000030077.12|cell adhesion molecule L1-like
mm39_v1_chr17_+_26028059_26028146	0.00030054811202796095	GGCAGUG	ENSMUST00000045692.9|Fbxl16|ENSMUSG00000025738.9|F-box and leucine-rich repeat protein 16
mm39_v1_chr5_-_34345014_34345083	0.0002640257214094235	GGCAGUG	ENSMUST00000042701.13|Mxd4|ENSMUSG00000037235.14|Max dimerization protein 4	ENSMUST00000119171.2|Mxd4|ENSMUSG00000037235.14|Max dimerization protein 4
mm39_v1_chr6_+_66873381_66873533	0.00018228962382488834	GGCAGUG	ENSMUST00000043148.13|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114228.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114227.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114226.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000204511.3|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114225.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114224.8|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12	ENSMUST00000114222.4|Gng12|ENSMUSG00000036402.14|guanine nucleotide binding protein (G protein), gamma 12
mm39_v1_chr9_-_62029877_62029900	0.0001515263291878409	GGCAGUG	ENSMUST00000185675.7|Glce|ENSMUSG00000032252.15|glucuronyl C5-epimerase
mm39_v1_chr16_-_26808724_26808724	0.00012022691505599284	GGCAGUG	ENSMUST00000089832.6|Gmnc|ENSMUSG00000068428.8|geminin coiled-coil domain containing
mm39_v1_chr11_+_61376257_61376287	0.00011322196334151866	GGCAGUG	ENSMUST00000064783.10|Mfap4|ENSMUSG00000042436.13|microfibrillar-associated protein 4	ENSMUST00000040522.7|Mfap4|ENSMUSG00000042436.13|microfibrillar-associated protein 4
mm39_v1_chr11_-_28534260_28534325	0.00010205920245656778	GGCAGUG	ENSMUST00000093253.10|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000109502.9|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A	ENSMUST00000042534.15|Ccdc85a|ENSMUSG00000032878.17|coiled-coil domain containing 85A
mm39_v1_chr10_+_80438698_80438791	4.003332377228927e-05	GGCAGUG	ENSMUST00000079883.12|Scamp4|ENSMUSG00000113949.2|secretory carrier membrane protein 4	ENSMUST00000038411.5|Adat3|ENSMUSG00000113640.2|adenosine deaminase, tRNA-specific 3	ENSMUST00000221960.2|Adat3|ENSMUSG00000113640.2|adenosine deaminase, tRNA-specific 3	ENSMUST00000221387.2|Scamp4|ENSMUSG00000113949.2|secretory carrier membrane protein 4	ENSMUST00000221032.2|Scamp4|ENSMUSG00000113949.2|secretory carrier membrane protein 4	ENSMUST00000180350.3|Scamp4|ENSMUSG00000113949.2|secretory carrier membrane protein 4
mm39_v1_chr2_-_119060366_119060394	3.6728894993371095e-06	GGCAGUG	ENSMUST00000076084.6|Ppp1r14d|ENSMUSG00000027317.9|protein phosphatase 1, regulatory inhibitor subunit 14D
