mm39_v1_chr12_-_73093953_73093953	1.280911740194315	GUAAACA	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr11_+_45946800_45946895	1.251369417769246	GUAAACA	ENSMUST00000011400.8|Adam19|ENSMUSG00000011256.17|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm39_v1_chr12_+_24701273_24701410	0.9343245273702199	GUAAACA	ENSMUST00000020982.7|Klf11|ENSMUSG00000020653.13|Kruppel-like factor 11
mm39_v1_chr12_-_80307110_80307145	0.9055260545272938	GUAAACA	ENSMUST00000021554.16|Actn1|ENSMUSG00000015143.16|actinin, alpha 1
mm39_v1_chr13_+_30933209_30933290	0.8107775081301739	GUAAACA	ENSMUST00000021784.10|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4	ENSMUST00000110307.3|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4	ENSMUST00000222125.2|Irf4|ENSMUSG00000021356.11|interferon regulatory factor 4
mm39_v1_chr15_-_90563510_90563635	0.764291922887089	GUAAACA	ENSMUST00000014777.9|Cpne8|ENSMUSG00000052560.16|copine VIII	ENSMUST00000064391.12|Cpne8|ENSMUSG00000052560.16|copine VIII
mm39_v1_chr3_-_100396635_100396652	0.7468653298272667	GUAAACA	ENSMUST00000061455.9|Tent5c|ENSMUSG00000044468.15|terminal nucleotidyltransferase 5C
mm39_v1_chr14_+_48358267_48358285	0.670456530004946	GUAAACA	ENSMUST00000073150.6|Peli2|ENSMUSG00000021846.10|pellino 2
mm39_v1_chr2_-_104542467_104542525	0.6583193610913921	GUAAACA	ENSMUST00000111118.8|Tcp11l1|ENSMUSG00000027175.11|t-complex 11 like 1	ENSMUST00000028597.4|Tcp11l1|ENSMUSG00000027175.11|t-complex 11 like 1
mm39_v1_chr5_+_32293145_32293201	0.6403333206528573	GUAAACA	ENSMUST00000031017.11|Fosl2|ENSMUSG00000029135.11|fos-like antigen 2
mm39_v1_chr8_+_127025265_127025343	0.6093355058580224	GUAAACA	ENSMUST00000108759.3|Slc35f3|ENSMUSG00000057060.9|solute carrier family 35, member F3
mm39_v1_chr4_-_141265745_141265838	0.602126462308591	GUAAACA	ENSMUST00000078886.10|Spen|ENSMUSG00000040761.17|spen family transcription repressor
mm39_v1_chr10_-_84276454_84276468	0.5991822260337302	GUAAACA	ENSMUST00000020220.15|Nuak1|ENSMUSG00000020032.15|NUAK family, SNF1-like kinase, 1
mm39_v1_chr4_-_136563154_136563299	0.5929500359865659	GUAAACA	ENSMUST00000105846.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000059287.14|Ephb2|ENSMUSG00000028664.15|Eph receptor B2	ENSMUST00000105845.9|Ephb2|ENSMUSG00000028664.15|Eph receptor B2
mm39_v1_chrX_+_102400061_102400094	0.5765278462425357	GUAAACA	ENSMUST00000116547.3|Chic1|ENSMUSG00000031327.11|cysteine-rich hydrophobic domain 1
mm39_v1_chr9_+_72569628_72569697	0.571469232287585	GUAAACA	ENSMUST00000034740.15|Nedd4|ENSMUSG00000032216.16|neural precursor cell expressed, developmentally down-regulated 4
mm39_v1_chr10_-_37014859_37014933	0.5264802646504592	GUAAACA	ENSMUST00000092584.6|Marcks|ENSMUSG00000069662.6|myristoylated alanine rich protein kinase C substrate
mm39_v1_chr19_-_47452840_47452894	0.5151934787822132	GUAAACA	ENSMUST00000081619.10|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr7_+_82516491_82516604	0.47993444872541896	GUAAACA	ENSMUST00000082237.7|Mex3b|ENSMUSG00000057706.8|mex3 RNA binding family member B
mm39_v1_chr17_+_31120785_31120800	0.4786486550828406	GUAAACA	ENSMUST00000114574.3|Glp1r|ENSMUSG00000024027.9|glucagon-like peptide 1 receptor
mm39_v1_chr8_+_27575611_27575626	0.4715622719926537	GUAAACA	ENSMUST00000178514.8|Adgra2|ENSMUSG00000031486.16|adhesion G protein-coupled receptor A2	ENSMUST00000033876.14|Adgra2|ENSMUSG00000031486.16|adhesion G protein-coupled receptor A2
mm39_v1_chr1_-_64995982_64995994	0.4528427005400916	GUAAACA	ENSMUST00000097713.2|Plekhm3|ENSMUSG00000051344.14|pleckstrin homology domain containing, family M, member 3
mm39_v1_chr5_+_137517140_137517140	0.442592972225192	GUAAACA	ENSMUST00000031727.10|Gigyf1|ENSMUSG00000029714.12|GRB10 interacting GYF protein 1
mm39_v1_chr10_+_59159118_59159196	0.4404566595828776	GUAAACA	ENSMUST00000009789.15|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	ENSMUST00000092512.11|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	ENSMUST00000105466.3|P4ha1|ENSMUSG00000019916.15|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide
mm39_v1_chr11_-_98040377_98040446	0.43776457528746116	GUAAACA	ENSMUST00000103143.10|Fbxl20|ENSMUSG00000020883.19|F-box and leucine-rich repeat protein 20
mm39_v1_chr10_+_115220826_115220927	0.4228291144014692	GUAAACA	ENSMUST00000036044.9|Zfc3h1|ENSMUSG00000034163.11|zinc finger, C3H1-type containing
mm39_v1_chr2_+_173918715_173918859	0.4204497813995344	GUAAACA	ENSMUST00000087908.10|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000044638.13|Stx16|ENSMUSG00000027522.16|syntaxin 16	ENSMUST00000156054.2|Stx16|ENSMUSG00000027522.16|syntaxin 16
mm39_v1_chr7_-_126620378_126620387	0.41830319682405037	GUAAACA	ENSMUST00000159916.5|Prrt2|ENSMUSG00000045114.11|proline-rich transmembrane protein 2
mm39_v1_chr4_+_150171822_150171999	0.4131311001384602	GUAAACA	ENSMUST00000094451.4|Gpr157|ENSMUSG00000047875.7|G protein-coupled receptor 157
mm39_v1_chr15_+_30172716_30172748	0.4091725915034003	GUAAACA	ENSMUST00000081728.7|Ctnnd2|ENSMUSG00000022240.11|catenin (cadherin associated protein), delta 2
mm39_v1_chr15_-_98769056_98769085	0.40379202277804194	GUAAACA	ENSMUST00000178486.9|Kmt2d|ENSMUSG00000048154.18|lysine (K)-specific methyltransferase 2D	ENSMUST00000023741.16|Kmt2d|ENSMUSG00000048154.18|lysine (K)-specific methyltransferase 2D
mm39_v1_chr7_-_25418401_25418513	0.40371165466924863	GUAAACA	ENSMUST00000125699.3|Ccdc97|ENSMUSG00000002608.9|coiled-coil domain containing 97	ENSMUST00000002683.3|Ccdc97|ENSMUSG00000002608.9|coiled-coil domain containing 97
mm39_v1_chr19_+_28967875_28967902	0.4010991814302718	GUAAACA	ENSMUST00000224599.2|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1	ENSMUST00000050148.5|Cdc37l1|ENSMUSG00000024780.8|cell division cycle 37-like 1
mm39_v1_chr15_-_38300937_38300959	0.40042207230702986	GUAAACA	ENSMUST00000227920.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000074043.7|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10	ENSMUST00000228416.2|Klf10|ENSMUSG00000037465.11|Kruppel-like factor 10
mm39_v1_chr3_+_102641822_102641846	0.39863551942683034	GUAAACA	ENSMUST00000029451.12|Tspan2|ENSMUSG00000027858.14|tetraspanin 2
mm39_v1_chr3_+_31149201_31149244	0.39412739193293866	GUAAACA	ENSMUST00000118470.8|Skil|ENSMUSG00000027660.17|SKI-like	ENSMUST00000029194.12|Skil|ENSMUSG00000027660.17|SKI-like	ENSMUST00000123532.2|Skil|ENSMUSG00000027660.17|SKI-like
mm39_v1_chr10_+_86136236_86136467	0.38697241032752616	GUAAACA	ENSMUST00000020234.14|Timp3|ENSMUSG00000020044.14|tissue inhibitor of metalloproteinase 3
mm39_v1_chr17_+_6320731_6320783	0.38537503712833	GUAAACA	ENSMUST00000088940.6|Tmem181a|ENSMUSG00000038141.12|transmembrane protein 181A
mm39_v1_chr5_+_21748523_21748587	0.3845794294335805	GUAAACA	ENSMUST00000035651.6|Lrrc17|ENSMUSG00000039883.6|leucine rich repeat containing 17
mm39_v1_chr5_+_123280250_123280350	0.37543009403593597	GUAAACA	ENSMUST00000174836.8|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B	ENSMUST00000163030.9|Setd1b|ENSMUSG00000038384.17|SET domain containing 1B
mm39_v1_chr3_-_57755500_57755519	0.3739546399028146	GUAAACA	ENSMUST00000066882.10|Pfn2|ENSMUSG00000027805.17|profilin 2
mm39_v1_chr7_-_136916123_136916174	0.3736041981209361	GUAAACA	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr8_+_117884711_117884876	0.3564310955640897	GUAAACA	ENSMUST00000064488.11|Gan|ENSMUSG00000052557.12|giant axonal neuropathy	ENSMUST00000162997.3|Gan|ENSMUSG00000052557.12|giant axonal neuropathy
mm39_v1_chr3_-_19365431_19365486	0.35537083320253915	GUAAACA	ENSMUST00000099195.10|Pde7a|ENSMUSG00000069094.13|phosphodiesterase 7A
mm39_v1_chr10_+_80972089_80972105	0.3552209574553425	GUAAACA	ENSMUST00000048128.15|Zbtb7a|ENSMUSG00000035011.16|zinc finger and BTB domain containing 7a
mm39_v1_chr7_+_131568167_131568198	0.3536390402246637	GUAAACA	ENSMUST00000045840.5|Gpr26|ENSMUSG00000040125.5|G protein-coupled receptor 26
mm39_v1_chr12_+_12312135_12312158	0.3516912103353996	GUAAACA	ENSMUST00000069066.14|Cyria|ENSMUSG00000020589.18|CYFIP related Rac1 interactor A
mm39_v1_chr11_+_117545618_117545655	0.3490405093051567	GUAAACA	ENSMUST00000106344.8|Tnrc6c|ENSMUSG00000025571.14|trinucleotide repeat containing 6C
mm39_v1_chr16_+_11140740_11140775	0.3436265968501557	GUAAACA	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr8_-_106553822_106553982	0.3388504699238067	GUAAACA	ENSMUST00000239468.2|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10	ENSMUST00000041400.6|Ranbp10|ENSMUSG00000037415.8|RAN binding protein 10
mm39_v1_chr18_+_36693646_36693673	0.33855396090867923	GUAAACA	ENSMUST00000155329.9|Ankhd1|ENSMUSG00000024483.20|ankyrin repeat and KH domain containing 1
mm39_v1_chr13_+_41013230_41013299	0.3381150743102401	GUAAACA	ENSMUST00000110191.10|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr7_-_63588610_63588704	0.3377500750155634	GUAAACA	ENSMUST00000063694.10|Klf13|ENSMUSG00000052040.11|Kruppel-like factor 13
mm39_v1_chr4_+_137321451_137321585	0.3319837841857001	GUAAACA	ENSMUST00000105840.8|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48	ENSMUST00000105839.8|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48	ENSMUST00000055131.13|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48	ENSMUST00000105838.8|Usp48|ENSMUSG00000043411.16|ubiquitin specific peptidase 48
mm39_v1_chr11_+_79230618_79230719	0.32883088614459854	GUAAACA	ENSMUST00000219057.2|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000108251.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1	ENSMUST00000071325.9|Nf1|ENSMUSG00000020716.17|neurofibromin 1
mm39_v1_chr2_+_31649946_31650001	0.3245855498146835	GUAAACA	ENSMUST00000028190.13|Abl1|ENSMUSG00000026842.17|c-abl oncogene 1, non-receptor tyrosine kinase
mm39_v1_chr9_-_95288775_95288775	0.3208815395138194	GUAAACA	ENSMUST00000036267.8|Chst2|ENSMUSG00000033350.8|carbohydrate sulfotransferase 2
mm39_v1_chr2_-_12306722_12306734	0.3184082478247251	GUAAACA	ENSMUST00000028106.11|Itga8|ENSMUSG00000026768.11|integrin alpha 8
mm39_v1_chr2_-_25873189_25873304	0.3184073806578808	GUAAACA	ENSMUST00000114167.9|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000091268.11|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1	ENSMUST00000183461.8|Camsap1|ENSMUSG00000026933.18|calmodulin regulated spectrin-associated protein 1
mm39_v1_chr9_+_121548237_121548344	0.3146740958511819	GUAAACA	ENSMUST00000035112.13|Nktr|ENSMUSG00000032525.16|natural killer tumor recognition sequence	ENSMUST00000182311.8|Nktr|ENSMUSG00000032525.16|natural killer tumor recognition sequence
mm39_v1_chr1_-_74544946_74545004	0.31308044160598686	GUAAACA	ENSMUST00000044260.11|Usp37|ENSMUSG00000033364.14|ubiquitin specific peptidase 37	ENSMUST00000186282.7|Usp37|ENSMUSG00000033364.14|ubiquitin specific peptidase 37
mm39_v1_chr6_-_116170389_116170462	0.310352327676163	GUAAACA	ENSMUST00000088896.10|Tmcc1|ENSMUSG00000030126.18|transmembrane and coiled coil domains 1
mm39_v1_chr8_-_105357941_105357976	0.3096633349490611	GUAAACA	ENSMUST00000034351.8|Rrad|ENSMUSG00000031880.8|Ras-related associated with diabetes
mm39_v1_chr12_+_71062733_71062837	0.30871675323725933	GUAAACA	ENSMUST00000046305.12|Arid4a|ENSMUSG00000048118.18|AT rich interactive domain 4A (RBP1-like)
mm39_v1_chr12_-_102671154_102671240	0.3062037790792968	GUAAACA	ENSMUST00000178697.2|Itpk1|ENSMUSG00000057963.10|inositol 1,3,4-triphosphate 5/6 kinase	ENSMUST00000046518.12|Itpk1|ENSMUSG00000057963.10|inositol 1,3,4-triphosphate 5/6 kinase
mm39_v1_chr12_+_49429574_49429666	0.30151659667489683	GUAAACA	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr6_-_57802131_57802151	0.2996282009882985	GUAAACA	ENSMUST00000204878.3|Vopp1|ENSMUSG00000037788.15|vesicular, overexpressed in cancer, prosurvival protein 1	ENSMUST00000145608.7|Vopp1|ENSMUSG00000037788.15|vesicular, overexpressed in cancer, prosurvival protein 1	ENSMUST00000203212.3|Vopp1|ENSMUSG00000037788.15|vesicular, overexpressed in cancer, prosurvival protein 1	ENSMUST00000114297.5|Vopp1|ENSMUSG00000037788.15|vesicular, overexpressed in cancer, prosurvival protein 1
mm39_v1_chr10_+_83379805_83379873	0.29648240206163773	GUAAACA	ENSMUST00000038388.7|Washc4|ENSMUSG00000034560.7|WASH complex subunit 4
mm39_v1_chr15_-_58078274_58078328	0.29396390123710947	GUAAACA	ENSMUST00000022986.8|Fbxo32|ENSMUSG00000022358.8|F-box protein 32
mm39_v1_chr6_+_29694181_29694247	0.2918470617289186	GUAAACA	ENSMUST00000046750.14|Tspan33|ENSMUSG00000001763.15|tetraspanin 33	ENSMUST00000115250.4|Tspan33|ENSMUSG00000001763.15|tetraspanin 33
mm39_v1_chr10_+_79762858_79762973	0.2912019339416019	GUAAACA	ENSMUST00000019708.12|Arid3a|ENSMUSG00000019564.13|AT rich interactive domain 3A (BRIGHT-like)	ENSMUST00000105377.8|Arid3a|ENSMUSG00000019564.13|AT rich interactive domain 3A (BRIGHT-like)
mm39_v1_chr3_+_101917455_101917487	0.29112054871579207	GUAAACA	ENSMUST00000066187.6|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2	ENSMUST00000198675.2|Nhlh2|ENSMUSG00000048540.9|nescient helix loop helix 2
mm39_v1_chr1_+_178014983_178015280	0.2905098966232707	GUAAACA	ENSMUST00000161075.8|Desi2|ENSMUSG00000026502.14|desumoylating isopeptidase 2	ENSMUST00000027783.14|Desi2|ENSMUSG00000026502.14|desumoylating isopeptidase 2
mm39_v1_chr3_+_145926709_145926764	0.2868732814687809	GUAAACA	ENSMUST00000039164.4|Lpar3|ENSMUSG00000036832.6|lysophosphatidic acid receptor 3
mm39_v1_chr14_-_25769457_25769513	0.28537944759072964	GUAAACA	ENSMUST00000069180.8|Zcchc24|ENSMUSG00000055538.8|zinc finger, CCHC domain containing 24
mm39_v1_chrX_+_137815171_137815187	0.2850774848894399	GUAAACA	ENSMUST00000064937.14|Nrk|ENSMUSG00000052854.16|Nik related kinase	ENSMUST00000113052.8|Nrk|ENSMUSG00000052854.16|Nik related kinase
mm39_v1_chrX_+_109857866_109857886	0.2803611741066777	GUAAACA	ENSMUST00000078229.5|Pou3f4|ENSMUSG00000056854.5|POU domain, class 3, transcription factor 4
mm39_v1_chr11_-_113956996_113957044	0.2779904655978102	GUAAACA	ENSMUST00000041627.14|Sdk2|ENSMUSG00000041592.17|sidekick cell adhesion molecule 2
mm39_v1_chr10_-_13350106_13350185	0.2773320150668461	GUAAACA	ENSMUST00000105545.12|Phactr2|ENSMUSG00000062866.17|phosphatase and actin regulator 2
mm39_v1_chr1_-_72576089_72576158	0.2723356907617631	GUAAACA	ENSMUST00000047786.6|Marchf4|ENSMUSG00000039372.6|membrane associated ring-CH-type finger 4
mm39_v1_chr11_-_120524362_120524431	0.2716656241275265	GUAAACA	ENSMUST00000058162.14|Mafg|ENSMUSG00000051510.14|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)
mm39_v1_chr15_-_28025920_28025970	0.2712274321541665	GUAAACA	ENSMUST00000090247.7|Trio|ENSMUSG00000022263.11|triple functional domain (PTPRF interacting)
mm39_v1_chr6_+_38410848_38410901	0.27030722081828323	GUAAACA	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr8_-_36716445_36716670	0.26821960872824335	GUAAACA	ENSMUST00000239119.2|Lonrf1|ENSMUSG00000039633.8|LON peptidase N-terminal domain and ring finger 1	ENSMUST00000065297.6|Lonrf1|ENSMUSG00000039633.8|LON peptidase N-terminal domain and ring finger 1
mm39_v1_chr11_-_97635484_97635571	0.26744900994307197	GUAAACA	ENSMUST00000018691.9|Pip4k2b|ENSMUSG00000018547.9|phosphatidylinositol-5-phosphate 4-kinase, type II, beta
mm39_v1_chr2_-_38955452_38955513	0.26678816312749953	GUAAACA	ENSMUST00000112850.9|Golga1|ENSMUSG00000026754.17|golgi autoantigen, golgin subfamily a, 1
mm39_v1_chr5_-_25703700_25703841	0.26472160749016177	GUAAACA	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr5_-_129030367_129030550	0.25799838484482146	GUAAACA	ENSMUST00000111346.6|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2	ENSMUST00000200470.5|Rimbp2|ENSMUSG00000029420.15|RIMS binding protein 2
mm39_v1_chr13_+_54722823_54722828	0.25782956865384293	GUAAACA	ENSMUST00000026988.11|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr5_-_125256117_125256294	0.2556103143267738	GUAAACA	ENSMUST00000086083.11|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111393.8|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111394.8|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111402.9|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2	ENSMUST00000111398.8|Ncor2|ENSMUSG00000029478.17|nuclear receptor co-repressor 2
mm39_v1_chr19_+_46587523_46587617	0.2555616151968165	GUAAACA	ENSMUST00000138302.9|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like	ENSMUST00000099376.11|Wbp1l|ENSMUSG00000047731.18|WW domain binding protein 1 like
mm39_v1_chr10_+_56253418_56253434	0.25525651254899656	GUAAACA	ENSMUST00000068581.9|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1	ENSMUST00000217789.2|Gja1|ENSMUSG00000050953.11|gap junction protein, alpha 1
mm39_v1_chr16_+_51851588_51851705	0.25462947274031883	GUAAACA	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr11_+_102652228_102652275	0.2531784229015198	GUAAACA	ENSMUST00000103081.10|Adam11|ENSMUSG00000020926.17|a disintegrin and metallopeptidase domain 11	ENSMUST00000068150.7|Adam11|ENSMUSG00000020926.17|a disintegrin and metallopeptidase domain 11
mm39_v1_chr1_+_105918383_105918450	0.2530757797980454	GUAAACA	ENSMUST00000119166.8|Zcchc2|ENSMUSG00000038866.16|zinc finger, CCHC domain containing 2
mm39_v1_chr12_+_59113659_59113670	0.2522457907785735	GUAAACA	ENSMUST00000021381.6|Pnn|ENSMUSG00000020994.6|pinin
mm39_v1_chr4_-_56947411_56947448	0.251860748242714	GUAAACA	ENSMUST00000107609.4|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245	ENSMUST00000068792.13|Tmem245|ENSMUSG00000055296.15|transmembrane protein 245
mm39_v1_chr3_+_79498663_79498737	0.2499746275891755	GUAAACA	ENSMUST00000029382.13|Ppid|ENSMUSG00000027804.14|peptidylprolyl isomerase D (cyclophilin D)
mm39_v1_chr19_+_57349112_57349136	0.2495119262082884	GUAAACA	ENSMUST00000036407.6|Fam160b1|ENSMUSG00000033478.6|family with sequence similarity 160, member B1
mm39_v1_chr5_+_63969706_63969891	0.24880038873246474	GUAAACA	ENSMUST00000081747.8|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene	ENSMUST00000196575.5|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene
mm39_v1_chr2_-_153371861_153371907	0.24848236781653135	GUAAACA	ENSMUST00000035346.14|Nol4l|ENSMUSG00000061411.13|nucleolar protein 4-like
mm39_v1_chr1_-_132953068_132953154	0.24799690484755357	GUAAACA	ENSMUST00000186617.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067429.10|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000067398.13|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4	ENSMUST00000188090.7|Mdm4|ENSMUSG00000054387.14|transformed mouse 3T3 cell double minute 4
mm39_v1_chr7_+_122723365_122723446	0.2455183094314244	GUAAACA	ENSMUST00000205514.2|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a	ENSMUST00000094053.7|Tnrc6a|ENSMUSG00000052707.9|trinucleotide repeat containing 6a
mm39_v1_chr3_+_53371086_53371102	0.24475929722456818	GUAAACA	ENSMUST00000058577.5|Proser1|ENSMUSG00000049504.13|proline and serine rich 1
mm39_v1_chr5_+_123532819_123532892	0.24435051768438212	GUAAACA	ENSMUST00000111596.8|Mlxip|ENSMUSG00000038342.16|MLX interacting protein	ENSMUST00000068237.12|Mlxip|ENSMUSG00000038342.16|MLX interacting protein
mm39_v1_chr17_-_12988492_12988588	0.24358927995860377	GUAAACA	ENSMUST00000024599.14|Igf2r|ENSMUSG00000023830.15|insulin-like growth factor 2 receptor
mm39_v1_chr14_-_67106037_67106137	0.24323499872937301	GUAAACA	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr16_+_24212284_24212320	0.24059251098235251	GUAAACA	ENSMUST00000038053.14|Lpp|ENSMUSG00000033306.16|LIM domain containing preferred translocation partner in lipoma
mm39_v1_chr5_-_51711237_51711264	0.23992949165648625	GUAAACA	ENSMUST00000132734.8|Ppargc1a|ENSMUSG00000029167.14|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm39_v1_chr13_-_100240570_100240602	0.2395172131534423	GUAAACA	ENSMUST00000038104.12|Bdp1|ENSMUSG00000049658.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
mm39_v1_chr9_+_118335294_118335357	0.2393806333728863	GUAAACA	ENSMUST00000084820.6|Golga4|ENSMUSG00000038708.11|golgi autoantigen, golgin subfamily a, 4
mm39_v1_chr6_-_112924205_112924239	0.23875174097809287	GUAAACA	ENSMUST00000088373.11|Srgap3|ENSMUSG00000030257.17|SLIT-ROBO Rho GTPase activating protein 3
mm39_v1_chr2_+_25222741_25222794	0.2375974005563308	GUAAACA	ENSMUST00000042390.5|Man1b1|ENSMUSG00000036646.14|mannosidase, alpha, class 1B, member 1
mm39_v1_chr9_+_74978429_74978511	0.2357095279901073	GUAAACA	ENSMUST00000123128.8|Myo5a|ENSMUSG00000034593.17|myosin VA
mm39_v1_chr16_+_17051423_17051528	0.2340105295959858	GUAAACA	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr11_+_31822211_31822263	0.2325883879999365	GUAAACA	ENSMUST00000020543.13|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4	ENSMUST00000109412.9|Cpeb4|ENSMUSG00000020300.15|cytoplasmic polyadenylation element binding protein 4
mm39_v1_chr2_-_5900130_5900243	0.23243581424382753	GUAAACA	ENSMUST00000026926.5|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000193792.6|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)	ENSMUST00000102981.10|Sec61a2|ENSMUSG00000025816.16|Sec61, alpha subunit 2 (S. cerevisiae)
mm39_v1_chr4_-_117354249_117354274	0.23166574255449576	GUAAACA	ENSMUST00000030439.15|Rnf220|ENSMUSG00000028677.20|ring finger protein 220
mm39_v1_chr4_+_59805829_59805914	0.2271127738749507	GUAAACA	ENSMUST00000030080.7|Snx30|ENSMUSG00000028385.15|sorting nexin family member 30
mm39_v1_chr5_+_108609087_108609107	0.22657852747647872	GUAAACA	ENSMUST00000112597.8|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3	ENSMUST00000046975.12|Pcgf3|ENSMUSG00000033623.14|polycomb group ring finger 3
mm39_v1_chr3_+_141170941_141170983	0.22529500529740884	GUAAACA	ENSMUST00000106236.9|Unc5c|ENSMUSG00000059921.16|unc-5 netrin receptor C
mm39_v1_chr1_+_127701901_127701975	0.2214352187166609	GUAAACA	ENSMUST00000112570.2|Ccnt2|ENSMUSG00000026349.15|cyclin T2	ENSMUST00000027587.15|Ccnt2|ENSMUSG00000026349.15|cyclin T2
mm39_v1_chr13_+_13764982_13765058	0.22099376001337337	GUAAACA	ENSMUST00000110559.3|Lyst|ENSMUSG00000019726.13|lysosomal trafficking regulator
mm39_v1_chr13_+_31809774_31809799	0.217897344268071	GUAAACA	ENSMUST00000042054.3|Foxf2|ENSMUSG00000038402.3|forkhead box F2
mm39_v1_chr11_+_21041291_21041308	0.21745322925851884	GUAAACA	ENSMUST00000093290.12|Peli1|ENSMUSG00000020134.14|pellino 1
mm39_v1_chr4_-_57143437_57143626	0.2162539372652047	GUAAACA	ENSMUST00000095076.10|Epb41l4b|ENSMUSG00000028434.13|erythrocyte membrane protein band 4.1 like 4b	ENSMUST00000030142.4|Epb41l4b|ENSMUSG00000028434.13|erythrocyte membrane protein band 4.1 like 4b
mm39_v1_chr7_+_125871761_125871791	0.21583396096932994	GUAAACA	ENSMUST00000056028.11|Sbk1|ENSMUSG00000042978.12|SH3-binding kinase 1
mm39_v1_chr18_-_46331877_46331891	0.21343635988377282	GUAAACA	ENSMUST00000167364.9|Trim36|ENSMUSG00000033949.13|tripartite motif-containing 36
mm39_v1_chr19_-_56810593_56810654	0.21175636835355408	GUAAACA	ENSMUST00000118592.8|Ccdc186|ENSMUSG00000035173.15|coiled-coil domain containing 186
mm39_v1_chrX_-_156381652_156381711	0.2104972423685879	GUAAACA	ENSMUST00000149249.2|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2	ENSMUST00000058098.15|Mbtps2|ENSMUSG00000046873.19|membrane-bound transcription factor peptidase, site 2
mm39_v1_chr6_+_113054314_113054343	0.2099441566354507	GUAAACA	ENSMUST00000042889.12|Setd5|ENSMUSG00000034269.13|SET domain containing 5
mm39_v1_chr7_-_57036920_57036972	0.2098795152719263	GUAAACA	ENSMUST00000068911.13|Gabrg3|ENSMUSG00000055026.14|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
mm39_v1_chr10_-_5872386_5872405	0.20913962822175497	GUAAACA	ENSMUST00000131996.8|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17	ENSMUST00000064225.14|Rgs17|ENSMUSG00000019775.18|regulator of G-protein signaling 17
mm39_v1_chr3_-_97134680_97134738	0.20910923144788512	GUAAACA	ENSMUST00000046521.14|Bcl9|ENSMUSG00000038256.16|B cell CLL/lymphoma 9
mm39_v1_chr17_+_83658354_83658453	0.20844158466630897	GUAAACA	ENSMUST00000096766.12|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000049503.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000112363.10|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4	ENSMUST00000234460.2|Eml4|ENSMUSG00000032624.17|echinoderm microtubule associated protein like 4
mm39_v1_chr13_-_103470937_103471007	0.20749372349792397	GUAAACA	ENSMUST00000167058.8|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4	ENSMUST00000164111.2|Mast4|ENSMUSG00000034751.18|microtubule associated serine/threonine kinase family member 4
mm39_v1_chr16_+_91526169_91526272	0.20665345436350208	GUAAACA	ENSMUST00000114001.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113999.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000064797.12|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000114002.9|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000095909.10|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000056482.14|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)	ENSMUST00000113996.8|Itsn1|ENSMUSG00000022957.21|intersectin 1 (SH3 domain protein 1A)
mm39_v1_chr14_-_30075424_30075492	0.20622281031053352	GUAAACA	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr1_-_91386976_91387058	0.2061653403773304	GUAAACA	ENSMUST00000069620.10|Per2|ENSMUSG00000055866.10|period circadian clock 2
mm39_v1_chr14_+_30547541_30547595	0.20405264391571715	GUAAACA	ENSMUST00000006701.8|Stimate|ENSMUSG00000006526.14|STIM activating enhancer
mm39_v1_chr14_+_62793175_62793260	0.20332083484092858	GUAAACA	ENSMUST00000039064.8|Fam124a|ENSMUSG00000035184.16|family with sequence similarity 124, member A
mm39_v1_chr10_-_60588539_60588600	0.2033206593902181	GUAAACA	ENSMUST00000117513.8|Slc29a3|ENSMUSG00000020100.16|solute carrier family 29 (nucleoside transporters), member 3	ENSMUST00000119595.8|Slc29a3|ENSMUSG00000020100.16|solute carrier family 29 (nucleoside transporters), member 3
mm39_v1_chr17_-_84495364_84495381	0.2027894641106057	GUAAACA	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr18_+_77981636_77981692	0.20070961538193852	GUAAACA	ENSMUST00000044622.7|Epg5|ENSMUSG00000039840.9|ectopic P-granules autophagy protein 5 homolog (C. elegans)
mm39_v1_chr16_+_32882882_32882919	0.198764442223709	GUAAACA	ENSMUST00000023497.3|Lmln|ENSMUSG00000022802.3|leishmanolysin-like (metallopeptidase M8 family)
mm39_v1_chr2_-_167191087_167191150	0.19865888222309638	GUAAACA	ENSMUST00000109221.9|B4galt5|ENSMUSG00000017929.14|UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5
mm39_v1_chr2_-_26393826_26393849	0.1967711126100583	GUAAACA	ENSMUST00000028288.5|Notch1|ENSMUSG00000026923.16|notch 1
mm39_v1_chr14_+_75253453_75253514	0.1954861493513421	GUAAACA	ENSMUST00000036072.8|Rubcnl|ENSMUSG00000034959.9|RUN and cysteine rich domain containing beclin 1 interacting protein like
mm39_v1_chrX_+_23559282_23559357	0.19341192224998993	GUAAACA	ENSMUST00000035766.13|Wdr44|ENSMUSG00000036769.15|WD repeat domain 44	ENSMUST00000101670.3|Wdr44|ENSMUSG00000036769.15|WD repeat domain 44
mm39_v1_chr11_+_55095144_55095211	0.1929169606747052	GUAAACA	ENSMUST00000108872.9|Slc36a1|ENSMUSG00000020261.16|solute carrier family 36 (proton/amino acid symporter), member 1	ENSMUST00000147506.8|Slc36a1|ENSMUSG00000020261.16|solute carrier family 36 (proton/amino acid symporter), member 1	ENSMUST00000020499.14|Slc36a1|ENSMUSG00000020261.16|solute carrier family 36 (proton/amino acid symporter), member 1
mm39_v1_chr8_-_116434517_116434533	0.1924894604566924	GUAAACA	ENSMUST00000109104.2|Maf|ENSMUSG00000055435.7|avian musculoaponeurotic fibrosarcoma oncogene homolog
mm39_v1_chr8_-_29709652_29709669	0.19199043657617806	GUAAACA	ENSMUST00000168630.4|Unc5d|ENSMUSG00000063626.7|unc-5 netrin receptor D
mm39_v1_chr11_+_23615612_23615697	0.19154356782218307	GUAAACA	ENSMUST00000109525.8|Pus10|ENSMUSG00000020280.13|pseudouridylate synthase 10	ENSMUST00000020520.11|Pus10|ENSMUSG00000020280.13|pseudouridylate synthase 10
mm39_v1_chr9_+_65816206_65816302	0.1907311968204569	GUAAACA	ENSMUST00000205379.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000206048.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000034949.10|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1	ENSMUST00000154589.2|Csnk1g1|ENSMUSG00000032384.17|casein kinase 1, gamma 1
mm39_v1_chr5_-_102217770_102217807	0.18996712745134656	GUAAACA	ENSMUST00000053177.14|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3	ENSMUST00000174698.2|Wdfy3|ENSMUSG00000043940.16|WD repeat and FYVE domain containing 3
mm39_v1_chr1_+_87254719_87254728	0.18966269938010985	GUAAACA	ENSMUST00000027475.15|Gigyf2|ENSMUSG00000048000.16|GRB10 interacting GYF protein 2
mm39_v1_chr8_+_71725332_71725429	0.18607898148452395	GUAAACA	ENSMUST00000212935.2|Myo9b|ENSMUSG00000004677.18|myosin IXb	ENSMUST00000170242.8|Myo9b|ENSMUSG00000004677.18|myosin IXb	ENSMUST00000071935.7|Myo9b|ENSMUSG00000004677.18|myosin IXb	ENSMUST00000168839.9|Myo9b|ENSMUSG00000004677.18|myosin IXb
mm39_v1_chr2_+_90770742_90770888	0.18574956903109033	GUAAACA	ENSMUST00000005643.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000111451.10|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000177642.8|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068726.13|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1	ENSMUST00000068747.14|Celf1|ENSMUSG00000005506.17|CUGBP, Elav-like family member 1
mm39_v1_chr13_-_34529157_34529257	0.18323558604043008	GUAAACA	ENSMUST00000040336.12|Slc22a23|ENSMUSG00000038267.16|solute carrier family 22, member 23
mm39_v1_chr18_-_10610048_10610146	0.18125809517740546	GUAAACA	ENSMUST00000115864.8|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000145320.2|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1	ENSMUST00000097670.10|Esco1|ENSMUSG00000024293.17|establishment of sister chromatid cohesion N-acetyltransferase 1
mm39_v1_chr6_-_149003171_149003184	0.17946152526939915	GUAAACA	ENSMUST00000111557.8|Dennd5b|ENSMUSG00000030313.16|DENN/MADD domain containing 5B
mm39_v1_chr19_-_45986919_45986960	0.17869206375686325	GUAAACA	ENSMUST00000045396.9|Armh3|ENSMUSG00000039901.11|armadillo-like helical domain containing 3
mm39_v1_chr10_+_107998219_107998269	0.17691116380602398	GUAAACA	ENSMUST00000070663.6|Ppp1r12a|ENSMUSG00000019907.11|protein phosphatase 1, regulatory subunit 12A
mm39_v1_chr1_-_106641940_106642062	0.17584558000619074	GUAAACA	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr9_-_65487322_65487343	0.1748453014812547	GUAAACA	ENSMUST00000068944.9|Plekho2|ENSMUSG00000050721.10|pleckstrin homology domain containing, family O member 2
mm39_v1_chr6_-_38230890_38231089	0.17422160607794482	GUAAACA	ENSMUST00000117556.8|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene	ENSMUST00000169256.5|D630045J12Rik|ENSMUSG00000063455.17|RIKEN cDNA D630045J12 gene
mm39_v1_chr12_+_4967376_4967438	0.17318494744850857	GUAAACA	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr16_+_4867876_4867992	0.17137227950806366	GUAAACA	ENSMUST00000230703.2|Ubn1|ENSMUSG00000039473.9|ubinuclein 1	ENSMUST00000052449.6|Ubn1|ENSMUSG00000039473.9|ubinuclein 1
mm39_v1_chr1_-_155293075_155293104	0.17112628839414376	GUAAACA	ENSMUST00000027741.12|Xpr1|ENSMUSG00000026469.15|xenotropic and polytropic retrovirus receptor 1
mm39_v1_chr6_+_103487973_103488039	0.1703891974563874	GUAAACA	ENSMUST00000066905.9|Chl1|ENSMUSG00000030077.12|cell adhesion molecule L1-like
mm39_v1_chr14_-_21102487_21102592	0.1703814413668037	GUAAACA	ENSMUST00000154460.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit	ENSMUST00000130291.8|Ap3m1|ENSMUSG00000021824.14|adaptor-related protein complex 3, mu 1 subunit
mm39_v1_chr5_-_121974913_121974927	0.16993254474449881	GUAAACA	ENSMUST00000040308.14|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3	ENSMUST00000086310.8|Sh2b3|ENSMUSG00000042594.17|SH2B adaptor protein 3
mm39_v1_chr11_-_86884507_86884538	0.1696673539155036	GUAAACA	ENSMUST00000018571.5|Ypel2|ENSMUSG00000018427.9|yippee like 2
mm39_v1_chr10_+_50468765_50468837	0.1695478310099145	GUAAACA	ENSMUST00000035606.10|Ascc3|ENSMUSG00000038774.10|activating signal cointegrator 1 complex subunit 3
mm39_v1_chr10_+_52566616_52566651	0.16919213222156104	GUAAACA	ENSMUST00000105473.3|Slc35f1|ENSMUSG00000038602.8|solute carrier family 35, member F1
mm39_v1_chr6_-_24664959_24665039	0.1685501699872744	GUAAACA	ENSMUST00000041737.8|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor	ENSMUST00000031695.15|Wasl|ENSMUSG00000029684.15|WASP like actin nucleation promoting factor
mm39_v1_chr11_-_116472272_116472298	0.1682662312748178	GUAAACA	ENSMUST00000082152.5|Ube2o|ENSMUSG00000020802.9|ubiquitin-conjugating enzyme E2O
mm39_v1_chr19_+_23736205_23736274	0.16670873976487444	GUAAACA	ENSMUST00000025830.9|Apba1|ENSMUSG00000024897.10|amyloid beta (A4) precursor protein binding, family  A, member 1
mm39_v1_chr19_-_7083094_7083094	0.16651890353800072	GUAAACA	ENSMUST00000113383.4|Flrt1|ENSMUSG00000047787.9|fibronectin leucine rich transmembrane protein 1
mm39_v1_chr6_+_4903299_4903347	0.1659200544642943	GUAAACA	ENSMUST00000035813.9|Ppp1r9a|ENSMUSG00000032827.16|protein phosphatase 1, regulatory subunit 9A
mm39_v1_chr3_-_95725944_95726114	0.16577183742981982	GUAAACA	ENSMUST00000200164.5|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2	ENSMUST00000090791.8|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2	ENSMUST00000197449.2|Rprd2|ENSMUSG00000028106.14|regulation of nuclear pre-mRNA domain containing 2
mm39_v1_chr19_-_29783389_29783389	0.16560408548416367	GUAAACA	ENSMUST00000177155.8|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr11_-_116303791_116303830	0.16336433506850856	GUAAACA	ENSMUST00000100202.10|Rnf157|ENSMUSG00000052949.15|ring finger protein 157	ENSMUST00000106398.9|Rnf157|ENSMUSG00000052949.15|ring finger protein 157
mm39_v1_chr10_+_3316057_3316162	0.1620851491149685	GUAAACA	ENSMUST00000043374.7|Ppp1r14c|ENSMUSG00000040653.7|protein phosphatase 1, regulatory inhibitor subunit 14C
mm39_v1_chr3_+_103009920_103010030	0.16197208861036877	GUAAACA	ENSMUST00000173206.8|Dennd2c|ENSMUSG00000007379.16|DENN/MADD domain containing 2C
mm39_v1_chr16_-_90081188_90081236	0.16166289732367298	GUAAACA	ENSMUST00000163419.9|Scaf4|ENSMUSG00000022983.17|SR-related CTD-associated factor 4
mm39_v1_chr14_-_57983511_57983604	0.16088023866225815	GUAAACA	ENSMUST00000173990.8|Lats2|ENSMUSG00000021959.17|large tumor suppressor 2	ENSMUST00000022531.14|Lats2|ENSMUSG00000021959.17|large tumor suppressor 2
mm39_v1_chr7_-_126807581_126807676	0.15985827881575682	GUAAACA	ENSMUST00000120705.3|Tbc1d10b|ENSMUSG00000042492.13|TBC1 domain family, member 10b
mm39_v1_chr19_+_7471398_7471460	0.1594773142614743	GUAAACA	ENSMUST00000170373.9|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3	ENSMUST00000236308.2|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3	ENSMUST00000235557.2|Atl3|ENSMUSG00000024759.15|atlastin GTPase 3
mm39_v1_chr14_-_75991903_75992003	0.15794678678755764	GUAAACA	ENSMUST00000049168.9|Cog3|ENSMUSG00000034893.10|component of oligomeric golgi complex 3
mm39_v1_chr1_+_179373935_179373970	0.1566702905329443	GUAAACA	ENSMUST00000040706.9|Cnst|ENSMUSG00000038949.9|consortin, connexin sorting protein
mm39_v1_chr7_-_119494918_119494975	0.15646059408449703	GUAAACA	ENSMUST00000059851.14|Dcun1d3|ENSMUSG00000048787.14|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm39_v1_chr15_+_80595486_80595541	0.15601444199192635	GUAAACA	ENSMUST00000067689.9|Tnrc6b|ENSMUSG00000047888.11|trinucleotide repeat containing 6b
mm39_v1_chr7_+_29821340_29821426	0.1558534284854707	GUAAACA	ENSMUST00000098596.11|Zfp382|ENSMUSG00000074220.11|zinc finger protein 382	ENSMUST00000153792.2|Zfp382|ENSMUSG00000074220.11|zinc finger protein 382
mm39_v1_chr16_+_17269845_17269903	0.15394400712043854	GUAAACA	ENSMUST00000006293.5|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like	ENSMUST00000231228.2|Crkl|ENSMUSG00000006134.5|v-crk avian sarcoma virus CT10 oncogene homolog-like
mm39_v1_chr12_-_118265103_118265162	0.15367717227372546	GUAAACA	ENSMUST00000222314.2|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4	ENSMUST00000026367.11|Sp4|ENSMUSG00000025323.11|trans-acting transcription factor 4
mm39_v1_chr6_+_91661034_91661058	0.15344077766980804	GUAAACA	ENSMUST00000032185.9|Slc6a6|ENSMUSG00000030096.9|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm39_v1_chr5_-_106844685_106844707	0.15340719948504208	GUAAACA	ENSMUST00000127434.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112696.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644	ENSMUST00000112698.8|Zfp644|ENSMUSG00000049606.17|zinc finger protein 644
mm39_v1_chr2_-_126718129_126718191	0.15336799147575483	GUAAACA	ENSMUST00000103224.10|Trpm7|ENSMUSG00000027365.15|transient receptor potential cation channel, subfamily M, member 7
mm39_v1_chr5_-_99400698_99400786	0.15325614077080832	GUAAACA	ENSMUST00000031276.15|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B	ENSMUST00000168092.8|Rasgef1b|ENSMUSG00000089809.10|RasGEF domain family, member 1B
mm39_v1_chr9_+_107217786_107217848	0.15294606920138512	GUAAACA	ENSMUST00000042581.4|6430571L13Rik|ENSMUSG00000037977.7|RIKEN cDNA 6430571L13 gene
mm39_v1_chr16_+_55794244_55794255	0.15163081485422744	GUAAACA	ENSMUST00000050248.9|Zbtb11|ENSMUSG00000022601.12|zinc finger and BTB domain containing 11
mm39_v1_chr17_-_45047521_45047561	0.15143501829283695	GUAAACA	ENSMUST00000113572.9|Runx2|ENSMUSG00000039153.18|runt related transcription factor 2
mm39_v1_chr9_+_118435755_118435823	0.15140958042740696	GUAAACA	ENSMUST00000044165.14|Itga9|ENSMUSG00000039115.14|integrin alpha 9
mm39_v1_chr8_-_71229293_71229361	0.15098813443127718	GUAAACA	ENSMUST00000034296.15|Pik3r2|ENSMUSG00000031834.16|phosphoinositide-3-kinase regulatory subunit 2
mm39_v1_chr8_+_106895488_106895562	0.1503490222506088	GUAAACA	ENSMUST00000034378.5|Slc7a6|ENSMUSG00000031904.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	ENSMUST00000212421.2|Slc7a6|ENSMUSG00000031904.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
mm39_v1_chr16_-_32065972_32065997	0.15029990878181554	GUAAACA	ENSMUST00000042732.6|Fbxo45|ENSMUSG00000035764.6|F-box protein 45
mm39_v1_chr8_+_108020092_108020118	0.15014745429018478	GUAAACA	ENSMUST00000169453.8|Nfat5|ENSMUSG00000003847.17|nuclear factor of activated T cells 5
mm39_v1_chr2_-_63928339_63928367	0.14970910287561823	GUAAACA	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr1_-_63153675_63153826	0.14923465938759245	GUAAACA	ENSMUST00000097718.9|Ino80d|ENSMUSG00000040865.16|INO80 complex subunit D
mm39_v1_chr9_-_21963306_21963322	0.14633646894936655	GUAAACA	ENSMUST00000003501.9|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3	ENSMUST00000215901.2|Elavl3|ENSMUSG00000003410.9|ELAV like RNA binding protein 3
mm39_v1_chr2_+_173501553_173501664	0.14607748424583716	GUAAACA	ENSMUST00000029024.10|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family	ENSMUST00000109110.4|Rab22a|ENSMUSG00000027519.11|RAB22A, member RAS oncogene family
mm39_v1_chr5_+_122422428_122422461	0.14578819904258178	GUAAACA	ENSMUST00000053426.15|Pptc7|ENSMUSG00000038582.16|PTC7 protein phosphatase homolog
mm39_v1_chr17_-_63806963_63807070	0.14559860543848013	GUAAACA	ENSMUST00000024761.13|Fbxl17|ENSMUSG00000023965.14|F-box and leucine-rich repeat protein 17
mm39_v1_chr9_+_45924105_45924119	0.14553302760489462	GUAAACA	ENSMUST00000126865.8|Sik3|ENSMUSG00000034135.16|SIK family kinase 3
mm39_v1_chr7_-_97827461_97827481	0.145020451178912	GUAAACA	ENSMUST00000040971.14|Capn5|ENSMUSG00000035547.15|calpain 5
mm39_v1_chr1_+_139349912_139350120	0.14474467025374985	GUAAACA	ENSMUST00000200243.5|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41	ENSMUST00000039867.10|Zbtb41|ENSMUSG00000033964.13|zinc finger and BTB domain containing 41
mm39_v1_chr10_+_128212953_128213024	0.14459317921031664	GUAAACA	ENSMUST00000014642.10|Ankrd52|ENSMUSG00000014498.10|ankyrin repeat domain 52
mm39_v1_chr10_+_110581293_110581433	0.144284563812447	GUAAACA	ENSMUST00000174857.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000073781.12|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173471.8|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7	ENSMUST00000173634.2|E2f7|ENSMUSG00000020185.17|E2F transcription factor 7
mm39_v1_chr11_-_79037213_79037236	0.14232863869329315	GUAAACA	ENSMUST00000018478.11|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1	ENSMUST00000108264.8|Ksr1|ENSMUSG00000018334.19|kinase suppressor of ras 1
mm39_v1_chr1_-_78173744_78173771	0.1421000597083236	GUAAACA	ENSMUST00000087086.7|Pax3|ENSMUSG00000004872.16|paired box 3
mm39_v1_chr2_-_28730286_28730372	0.1406067245184555	GUAAACA	ENSMUST00000037117.6|Gtf3c4|ENSMUSG00000035666.15|general transcription factor IIIC, polypeptide 4	ENSMUST00000171404.8|Gtf3c4|ENSMUSG00000035666.15|general transcription factor IIIC, polypeptide 4
mm39_v1_chr16_-_31019967_31020064	0.13927541708381924	GUAAACA	ENSMUST00000230614.2|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	ENSMUST00000058033.9|Acap2|ENSMUSG00000049076.13|ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
mm39_v1_chr10_-_110845860_110845927	0.13902986495071684	GUAAACA	ENSMUST00000041723.15|Zdhhc17|ENSMUSG00000035798.15|zinc finger, DHHC domain containing 17
mm39_v1_chr11_+_90140294_90140312	0.13766122328940864	GUAAACA	ENSMUST00000004050.7|Mmd|ENSMUSG00000003948.18|monocyte to macrophage differentiation-associated
mm39_v1_chr5_-_123711098_123711103	0.1371995120452609	GUAAACA	ENSMUST00000031388.13|Vps33a|ENSMUSG00000029434.13|VPS33A CORVET/HOPS core subunit
mm39_v1_chr5_-_90514360_90514469	0.13641997904306258	GUAAACA	ENSMUST00000168058.7|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17	ENSMUST00000014421.15|Ankrd17|ENSMUSG00000055204.16|ankyrin repeat domain 17
mm39_v1_chr17_+_69463786_69463845	0.13605061531834345	GUAAACA	ENSMUST00000112680.8|Epb41l3|ENSMUSG00000024044.20|erythrocyte membrane protein band 4.1 like 3	ENSMUST00000080208.7|Epb41l3|ENSMUSG00000024044.20|erythrocyte membrane protein band 4.1 like 3	ENSMUST00000225977.2|Epb41l3|ENSMUSG00000024044.20|erythrocyte membrane protein band 4.1 like 3
mm39_v1_chr11_+_77107006_77107113	0.13595803299661152	GUAAACA	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr3_-_79474989_79475000	0.1352337165293842	GUAAACA	ENSMUST00000076136.7|Fnip2|ENSMUSG00000061175.13|folliculin interacting protein 2
mm39_v1_chr17_+_28075415_28075486	0.13457065806212465	GUAAACA	ENSMUST00000114849.3|Uhrf1bp1|ENSMUSG00000039512.13|UHRF1 (ICBP90) binding protein 1
mm39_v1_chr10_+_98750978_98751034	0.13436876429356304	GUAAACA	ENSMUST00000020107.8|Atp2b1|ENSMUSG00000019943.11|ATPase, Ca++ transporting, plasma membrane 1
mm39_v1_chr11_+_95603494_95603529	0.1329147008247449	GUAAACA	ENSMUST00000107717.8|Zfp652|ENSMUSG00000075595.10|zinc finger protein 652
mm39_v1_chr7_-_35502392_35502433	0.13289958892640552	GUAAACA	ENSMUST00000187282.3|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000205670.2|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507	ENSMUST00000061586.11|Zfp507|ENSMUSG00000044452.11|zinc finger protein 507
mm39_v1_chr4_+_109264284_109264364	0.1320648556871054	GUAAACA	ENSMUST00000064129.14|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A	ENSMUST00000106619.8|Ttc39a|ENSMUSG00000028555.16|tetratricopeptide repeat domain 39A
mm39_v1_chr18_+_32296126_32296249	0.13102256499064913	GUAAACA	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr11_+_67477347_67477366	0.13065595446207937	GUAAACA	ENSMUST00000108682.9|Gas7|ENSMUSG00000033066.17|growth arrest specific 7
mm39_v1_chr11_-_101193106_101193117	0.12994151387403285	GUAAACA	ENSMUST00000130916.8|Becn1|ENSMUSG00000035086.14|beclin 1, autophagy related
mm39_v1_chr1_-_60605867_60605938	0.12931383659930554	GUAAACA	ENSMUST00000027168.12|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	ENSMUST00000090293.11|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	ENSMUST00000140485.8|Raph1|ENSMUSG00000026014.16|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm39_v1_chr15_+_80556023_80556062	0.12888313903803927	GUAAACA	ENSMUST00000023044.7|Fam83f|ENSMUSG00000022408.8|family with sequence similarity 83, member F
mm39_v1_chr11_+_112673041_112673059	0.12881319761760956	GUAAACA	ENSMUST00000000579.3|Sox9|ENSMUSG00000000567.6|SRY (sex determining region Y)-box 9
mm39_v1_chrX_+_84617624_84617756	0.12745173311011868	GUAAACA	ENSMUST00000048250.10|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000137438.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3	ENSMUST00000146063.2|Tab3|ENSMUSG00000035476.10|TGF-beta activated kinase 1/MAP3K7 binding protein 3
mm39_v1_chr1_+_104696235_104696254	0.12571131919941866	GUAAACA	ENSMUST00000062528.9|Cdh20|ENSMUSG00000050840.9|cadherin 20
mm39_v1_chr2_-_142743438_142743530	0.1253552945130875	GUAAACA	ENSMUST00000230763.2|Kif16b|ENSMUSG00000038844.11|kinesin family member 16B	ENSMUST00000043589.8|Kif16b|ENSMUSG00000038844.11|kinesin family member 16B
mm39_v1_chr16_+_32734464_32734512	0.12491651589216511	GUAAACA	ENSMUST00000023491.13|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000170899.8|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000170201.8|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000165616.8|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3	ENSMUST00000135193.9|Lrch3|ENSMUSG00000022801.14|leucine-rich repeats and calponin homology (CH) domain containing 3
mm39_v1_chr12_-_56581823_56581891	0.12427195913458229	GUAAACA	ENSMUST00000178477.9|Nkx2-1|ENSMUSG00000001496.16|NK2 homeobox 1
mm39_v1_chr8_+_91555449_91555470	0.12304601408434597	GUAAACA	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr2_+_92430043_92430069	0.12285761903669017	GUAAACA	ENSMUST00000065797.7|Chst1|ENSMUSG00000027221.6|carbohydrate sulfotransferase 1
mm39_v1_chr19_+_38919353_38919364	0.12284507600280528	GUAAACA	ENSMUST00000025965.12|Hells|ENSMUSG00000025001.12|helicase, lymphoid specific
mm39_v1_chr1_-_57011595_57011661	0.12270087685163696	GUAAACA	ENSMUST00000042857.14|Satb2|ENSMUSG00000038331.16|special AT-rich sequence binding protein 2
mm39_v1_chrX_-_94488394_94488478	0.12162139795808372	GUAAACA	ENSMUST00000084535.6|Amer1|ENSMUSG00000050332.8|APC membrane recruitment 1
mm39_v1_chr1_+_91178017_91178103	0.12136592359974535	GUAAACA	ENSMUST00000059743.12|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)	ENSMUST00000178627.8|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)	ENSMUST00000171165.8|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)	ENSMUST00000191368.7|Ube2f|ENSMUSG00000034343.15|ubiquitin-conjugating enzyme E2F (putative)
mm39_v1_chr5_-_135963408_135963467	0.12083726962242025	GUAAACA	ENSMUST00000198270.2|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	ENSMUST00000055808.6|Ywhag|ENSMUSG00000051391.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm39_v1_chr10_+_71183571_71183593	0.12027996569628711	GUAAACA	ENSMUST00000079252.13|Ipmk|ENSMUSG00000060733.14|inositol polyphosphate multikinase
mm39_v1_chr7_-_34012956_34012993	0.12024856621614996	GUAAACA	ENSMUST00000108074.8|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
mm39_v1_chr10_+_69932930_69933066	0.11962858351726592	GUAAACA	ENSMUST00000147545.8|Ccdc6|ENSMUSG00000048701.14|coiled-coil domain containing 6
mm39_v1_chr11_+_77576981_77577005	0.1191937977313972	GUAAACA	ENSMUST00000100802.11|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2	ENSMUST00000181023.2|Nufip2|ENSMUSG00000037857.17|nuclear fragile X mental retardation protein interacting protein 2
mm39_v1_chr17_+_25407352_25407392	0.1188038836396342	GUAAACA	ENSMUST00000039734.12|Unkl|ENSMUSG00000015127.15|unkempt family like zinc finger
mm39_v1_chr12_-_79343040_79343086	0.11857127169023272	GUAAACA	ENSMUST00000218377.2|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26	ENSMUST00000021547.8|Zfyve26|ENSMUSG00000066440.6|zinc finger, FYVE domain containing 26
mm39_v1_chr1_-_160958998_160959081	0.11705041945444881	GUAAACA	ENSMUST00000111611.8|Klhl20|ENSMUSG00000026705.17|kelch-like 20
mm39_v1_chr14_-_39194782_39195045	0.11678060727789936	GUAAACA	ENSMUST00000168810.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000173780.2|Nrg3|ENSMUSG00000041014.18|neuregulin 3	ENSMUST00000166968.9|Nrg3|ENSMUSG00000041014.18|neuregulin 3
mm39_v1_chr14_-_60324265_60324374	0.11626798741725108	GUAAACA	ENSMUST00000080368.13|Atp8a2|ENSMUSG00000021983.17|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm39_v1_chr12_-_34578842_34578903	0.11623514585251432	GUAAACA	ENSMUST00000110819.4|Hdac9|ENSMUSG00000004698.12|histone deacetylase 9
mm39_v1_chr1_+_130645056_130645070	0.11597494425259623	GUAAACA	ENSMUST00000049813.6|Yod1|ENSMUSG00000046404.6|YOD1 deubiquitinase
mm39_v1_chr4_-_145041710_145041739	0.11554390677249146	GUAAACA	ENSMUST00000030339.13|Tnfrsf8|ENSMUSG00000028602.13|tumor necrosis factor receptor superfamily, member 8
mm39_v1_chr7_+_55699883_55700001	0.11520702635836275	GUAAACA	ENSMUST00000205653.2|Herc2|ENSMUSG00000030451.17|HECT and RLD domain containing E3 ubiquitin protein ligase 2	ENSMUST00000076226.13|Herc2|ENSMUSG00000030451.17|HECT and RLD domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr11_+_75570085_75570167	0.11500468482342201	GUAAACA	ENSMUST00000017920.14|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108426.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000108425.8|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog	ENSMUST00000093115.4|Crk|ENSMUSG00000017776.16|v-crk avian sarcoma virus CT10 oncogene homolog
mm39_v1_chr13_+_118851214_118851238	0.1145578897488454	GUAAACA	ENSMUST00000022246.9|Fgf10|ENSMUSG00000021732.15|fibroblast growth factor 10
mm39_v1_chr9_-_96513529_96513670	0.11157625182404975	GUAAACA	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr5_+_121798623_121798696	0.10989633043509717	GUAAACA	ENSMUST00000031414.15|Brap|ENSMUSG00000029458.15|BRCA1 associated protein
mm39_v1_chr2_-_51039112_51039127	0.10988547414550423	GUAAACA	ENSMUST00000154545.2|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3	ENSMUST00000017288.9|Rnd3|ENSMUSG00000017144.9|Rho family GTPase 3
mm39_v1_chr12_-_107969853_107969872	0.1093893008304985	GUAAACA	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr6_-_134543876_134543959	0.10690147043076811	GUAAACA	ENSMUST00000032322.15|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6	ENSMUST00000126836.4|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6
mm39_v1_chr19_+_8966641_8966662	0.10649548107783627	GUAAACA	ENSMUST00000092956.4|Ahnak|ENSMUSG00000069833.14|AHNAK nucleoprotein (desmoyokin)	ENSMUST00000092955.11|Ahnak|ENSMUSG00000069833.14|AHNAK nucleoprotein (desmoyokin)
mm39_v1_chr4_+_101574601_101574659	0.10563047244638064	GUAAACA	ENSMUST00000102777.10|Lepr|ENSMUSG00000057722.18|leptin receptor	ENSMUST00000106921.9|Lepr|ENSMUSG00000057722.18|leptin receptor	ENSMUST00000037552.10|Lepr|ENSMUSG00000057722.18|leptin receptor	ENSMUST00000145024.2|Lepr|ENSMUSG00000057722.18|leptin receptor
mm39_v1_chr14_+_67470884_67471035	0.10530201402068798	GUAAACA	ENSMUST00000176161.8|Ebf2|ENSMUSG00000022053.14|early B cell factor 2
mm39_v1_chr1_+_60448703_60448811	0.10460699887223256	GUAAACA	ENSMUST00000052332.15|Abi2|ENSMUSG00000026782.16|abl interactor 2
mm39_v1_chr12_+_16944896_16944904	0.10327921394945538	GUAAACA	ENSMUST00000020904.8|Rock2|ENSMUSG00000020580.11|Rho-associated coiled-coil containing protein kinase 2
mm39_v1_chr13_+_14238361_14238407	0.10233850695859154	GUAAACA	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr16_+_58548273_58548426	0.10079792470854779	GUAAACA	ENSMUST00000023426.12|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1	ENSMUST00000162057.8|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1	ENSMUST00000162191.2|Cldnd1|ENSMUSG00000022744.13|claudin domain containing 1
mm39_v1_chr1_+_156386414_156386619	0.10061909941957767	GUAAACA	ENSMUST00000166172.9|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	ENSMUST00000027888.13|Abl2|ENSMUSG00000026596.14|v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)
mm39_v1_chr1_-_84818223_84818261	0.1003827337438005	GUAAACA	ENSMUST00000186465.7|Trip12|ENSMUSG00000026219.15|thyroid hormone receptor interactor 12
mm39_v1_chr15_-_73056713_73056822	0.09985261532970832	GUAAACA	ENSMUST00000044113.12|Ago2|ENSMUSG00000036698.12|argonaute RISC catalytic subunit 2
mm39_v1_chr4_-_148215135_148215164	0.09947637504828667	GUAAACA	ENSMUST00000030862.5|Draxin|ENSMUSG00000029005.5|dorsal inhibitory axon guidance protein
mm39_v1_chrX_+_163202852_163202905	0.0988553235110414	GUAAACA	ENSMUST00000112255.8|Piga|ENSMUSG00000031381.17|phosphatidylinositol glycan anchor biosynthesis, class A
mm39_v1_chr15_-_64184485_64184537	0.09864682951719145	GUAAACA	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr5_+_110283689_110283791	0.09843884074838086	GUAAACA	ENSMUST00000200038.2|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000112519.9|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000198633.5|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000014812.13|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains	ENSMUST00000199811.3|Chfr|ENSMUSG00000014668.16|checkpoint with forkhead and ring finger domains
mm39_v1_chr15_-_9140460_9140526	0.09783401084797586	GUAAACA	ENSMUST00000110585.10|Skp2|ENSMUSG00000054115.13|S-phase kinase-associated protein 2
mm39_v1_chr12_+_65083093_65083132	0.09709965967541322	GUAAACA	ENSMUST00000120580.8|Prpf39|ENSMUSG00000035597.20|pre-mRNA processing factor 39
mm39_v1_chr2_-_57004933_57005050	0.09669213006905332	GUAAACA	ENSMUST00000028166.9|Nr4a2|ENSMUSG00000026826.14|nuclear receptor subfamily 4, group A, member 2
mm39_v1_chr16_-_45830575_45830587	0.0943150036089857	GUAAACA	ENSMUST00000130481.2|Plcxd2|ENSMUSG00000087141.2|phosphatidylinositol-specific phospholipase C, X domain containing 2
mm39_v1_chr10_-_123032821_123032868	0.0931455993975873	GUAAACA	ENSMUST00000219619.2|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15	ENSMUST00000020334.9|Usp15|ENSMUSG00000020124.11|ubiquitin specific peptidase 15
mm39_v1_chr16_+_87495792_87495872	0.09279717123916033	GUAAACA	ENSMUST00000026703.6|Bach1|ENSMUSG00000025612.6|BTB and CNC homology 1, basic leucine zipper transcription factor 1
mm39_v1_chr17_-_57137898_57138013	0.09224539816687155	GUAAACA	ENSMUST00000233000.2|Rfx2|ENSMUSG00000024206.16|regulatory factor X, 2 (influences HLA class II expression)	ENSMUST00000002444.15|Rfx2|ENSMUSG00000024206.16|regulatory factor X, 2 (influences HLA class II expression)	ENSMUST00000086801.7|Rfx2|ENSMUSG00000024206.16|regulatory factor X, 2 (influences HLA class II expression)
mm39_v1_chr7_+_119773070_119773117	0.09221053849417253	GUAAACA	ENSMUST00000033201.7|Anks4b|ENSMUSG00000030909.7|ankyrin repeat and sterile alpha motif domain containing 4B
mm39_v1_chr15_-_89199456_89199515	0.09186312682541466	GUAAACA	ENSMUST00000144585.9|Sbf1|ENSMUSG00000036529.18|SET binding factor 1	ENSMUST00000123791.8|Sbf1|ENSMUSG00000036529.18|SET binding factor 1
mm39_v1_chr18_-_38471962_38472056	0.09145586010405446	GUAAACA	ENSMUST00000139885.2|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1	ENSMUST00000235590.2|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1	ENSMUST00000237487.2|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1	ENSMUST00000063814.15|Gnpda1|ENSMUSG00000052102.16|glucosamine-6-phosphate deaminase 1
mm39_v1_chr2_-_19002932_19002971	0.09131952982827905	GUAAACA	ENSMUST00000006912.12|Pip4k2a|ENSMUSG00000026737.13|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm39_v1_chr2_-_63014622_63014681	0.09120474340881915	GUAAACA	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr2_+_126850613_126850680	0.09100856450770677	GUAAACA	ENSMUST00000110394.8|Ap4e1|ENSMUSG00000001998.16|adaptor-related protein complex AP-4, epsilon 1	ENSMUST00000002063.15|Ap4e1|ENSMUSG00000001998.16|adaptor-related protein complex AP-4, epsilon 1
mm39_v1_chr18_+_44513547_44513644	0.09072598885681665	GUAAACA	ENSMUST00000202306.2|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2	ENSMUST00000025350.10|Dcp2|ENSMUSG00000024472.10|decapping mRNA 2
mm39_v1_chr13_+_104424359_104424432	0.089989659350005	GUAAACA	ENSMUST00000065766.7|Adamts6|ENSMUSG00000046169.11|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6
mm39_v1_chr1_+_136059101_136059142	0.08955112480580052	GUAAACA	ENSMUST00000075164.11|Kif21b|ENSMUSG00000041642.19|kinesin family member 21B
mm39_v1_chr11_-_4068779_4068831	0.089286401479289	GUAAACA	ENSMUST00000003681.8|Sec14l2|ENSMUSG00000003585.14|SEC14-like lipid binding 2
mm39_v1_chr3_-_94490023_94490077	0.0890445885511484	GUAAACA	ENSMUST00000029783.16|Snx27|ENSMUSG00000028136.16|sorting nexin family member 27
mm39_v1_chr11_-_50183129_50183191	0.08737280743833231	GUAAACA	ENSMUST00000059458.5|Maml1|ENSMUSG00000050567.17|mastermind like transcriptional coactivator 1
mm39_v1_chr9_+_30941924_30941997	0.0866604858266769	GUAAACA	ENSMUST00000216649.2|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44	ENSMUST00000115222.10|Zbtb44|ENSMUSG00000047412.17|zinc finger and BTB domain containing 44
mm39_v1_chr3_-_104725535_104725558	0.08585611454293972	GUAAACA	ENSMUST00000002297.12|Mov10|ENSMUSG00000002227.16|Mov10 RISC complex RNA helicase
mm39_v1_chr19_+_41471067_41471128	0.08573011758421362	GUAAACA	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr9_+_72439496_72439553	0.08420328087099353	GUAAACA	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr15_+_99936516_99936552	0.08395496212856118	GUAAACA	ENSMUST00000100203.10|Dip2b|ENSMUSG00000023026.17|disco interacting protein 2 homolog B
mm39_v1_chr16_+_91855158_91855216	0.08373726888542182	GUAAACA	ENSMUST00000047429.9|Mrps6|ENSMUSG00000039680.11|mitochondrial ribosomal protein S6	ENSMUST00000232677.2|Gm49711|ENSMUSG00000116930.2|predicted gene, 49711	ENSMUST00000113975.3|Slc5a3|ENSMUSG00000089774.3|solute carrier family 5 (inositol transporters), member 3
mm39_v1_chr8_+_107877252_107877322	0.08373538139567079	GUAAACA	ENSMUST00000034400.5|Cyb5b|ENSMUSG00000031924.5|cytochrome b5 type B
mm39_v1_chr10_-_42152684_42152759	0.08281603329046867	GUAAACA	ENSMUST00000175881.8|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000056974.4|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000105502.8|Foxo3|ENSMUSG00000048756.12|forkhead box O3	ENSMUST00000105501.2|Foxo3|ENSMUSG00000048756.12|forkhead box O3
mm39_v1_chr3_-_58599812_58599834	0.08281183658113203	GUAAACA	ENSMUST00000070368.8|Siah2|ENSMUSG00000036432.9|siah E3 ubiquitin protein ligase 2
mm39_v1_chr1_-_157240138_157240191	0.08276593482588623	GUAAACA	ENSMUST00000078308.13|Rasal2|ENSMUSG00000070565.12|RAS protein activator like 2
mm39_v1_chr2_-_33321306_33321359	0.08235299877022727	GUAAACA	ENSMUST00000113158.8|Zbtb34|ENSMUSG00000068966.11|zinc finger and BTB domain containing 34
mm39_v1_chr18_+_36414122_36414204	0.08074772024017322	GUAAACA	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr1_-_152642032_152642069	0.07959546091663759	GUAAACA	ENSMUST00000111859.8|Rgl1|ENSMUSG00000026482.14|ral guanine nucleotide dissociation stimulator,-like 1
mm39_v1_chr1_-_155848917_155849012	0.07887089291118038	GUAAACA	ENSMUST00000138762.8|Cep350|ENSMUSG00000033671.19|centrosomal protein 350
mm39_v1_chr4_-_22488296_22488366	0.07871772947141276	GUAAACA	ENSMUST00000178174.3|Pou3f2|ENSMUSG00000095139.3|POU domain, class 3, transcription factor 2
mm39_v1_chr12_+_85793313_85793347	0.07786391423942718	GUAAACA	ENSMUST00000040461.4|Flvcr2|ENSMUSG00000034258.5|feline leukemia virus subgroup C cellular receptor 2
mm39_v1_chr18_-_77652820_77652858	0.07686838261552237	GUAAACA	ENSMUST00000026494.14|Rnf165|ENSMUSG00000025427.16|ring finger protein 165	ENSMUST00000182024.2|Rnf165|ENSMUSG00000025427.16|ring finger protein 165
mm39_v1_chr2_-_92264374_92264398	0.07657442906705976	GUAAACA	ENSMUST00000111278.2|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)	ENSMUST00000090559.12|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)
mm39_v1_chr15_-_79816785_79816876	0.07619371318482278	GUAAACA	ENSMUST00000089293.11|Cbx7|ENSMUSG00000053411.17|chromobox 7	ENSMUST00000109616.9|Cbx7|ENSMUSG00000053411.17|chromobox 7
mm39_v1_chr13_+_95012107_95012119	0.07526156054315329	GUAAACA	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr2_+_129642371_129642493	0.07489723114817216	GUAAACA	ENSMUST00000165413.9|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35	ENSMUST00000166282.3|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35
mm39_v1_chr15_+_100125693_100125705	0.07457858250515355	GUAAACA	ENSMUST00000023769.11|Atf1|ENSMUSG00000023027.14|activating transcription factor 1
mm39_v1_chr2_-_3476067_3476115	0.07453254177294055	GUAAACA	ENSMUST00000027956.9|Suv39h2|ENSMUSG00000026646.17|suppressor of variegation 3-9 2
mm39_v1_chr9_+_57615816_57615891	0.07450711467486006	GUAAACA	ENSMUST00000043990.14|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3	ENSMUST00000142807.2|Edc3|ENSMUSG00000038957.14|enhancer of mRNA decapping 3
mm39_v1_chr9_+_43978290_43978319	0.07377556755139657	GUAAACA	ENSMUST00000034508.14|Usp2|ENSMUSG00000032010.16|ubiquitin specific peptidase 2
mm39_v1_chr6_+_56691875_56691937	0.07332999012673236	GUAAACA	ENSMUST00000031805.11|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated	ENSMUST00000177249.3|Avl9|ENSMUSG00000029787.11|AVL9 cell migration associated
mm39_v1_chr1_+_74545203_74545264	0.07223442206055376	GUAAACA	ENSMUST00000087215.7|Cnot9|ENSMUSG00000026174.10|CCR4-NOT transcription complex, subunit 9
mm39_v1_chr1_-_21149392_21149467	0.07147291816658867	GUAAACA	ENSMUST00000037998.6|Tram2|ENSMUSG00000041779.6|translocating chain-associating membrane protein 2
mm39_v1_chr18_-_33596792_33596853	0.07127919156159714	GUAAACA	ENSMUST00000051087.16|Nrep|ENSMUSG00000042834.16|neuronal regeneration related protein
mm39_v1_chr5_+_76988444_76988484	0.07026849822776321	GUAAACA	ENSMUST00000120639.9|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000163347.8|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin	ENSMUST00000121851.2|Cracd|ENSMUSG00000036377.20|capping protein inhibiting regulator of actin
mm39_v1_chr17_-_80787398_80787398	0.0700329342957647	GUAAACA	ENSMUST00000068714.7|Sos1|ENSMUSG00000024241.8|SOS Ras/Rac guanine nucleotide exchange factor 1
mm39_v1_chr10_-_94780695_94780724	0.06994634564087085	GUAAACA	ENSMUST00000099337.5|Plxnc1|ENSMUSG00000074785.6|plexin C1
mm39_v1_chr2_-_25982160_25982189	0.06915194455622435	GUAAACA	ENSMUST00000114159.9|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr15_+_37233280_37233318	0.06875259662847197	GUAAACA	ENSMUST00000161405.8|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000022895.15|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2	ENSMUST00000161532.2|Grhl2|ENSMUSG00000022286.17|grainyhead like transcription factor 2
mm39_v1_chr10_+_95776543_95776647	0.06825884489563719	GUAAACA	ENSMUST00000053484.8|Eea1|ENSMUSG00000036499.10|early endosome antigen 1
mm39_v1_chr2_+_172187485_172187513	0.06822192763157271	GUAAACA	ENSMUST00000028995.5|Fam210b|ENSMUSG00000027495.5|family with sequence similarity 210, member B
mm39_v1_chr5_-_114131934_114131964	0.06771403300198346	GUAAACA	ENSMUST00000159592.8|Ssh1|ENSMUSG00000042121.17|slingshot protein phosphatase 1
mm39_v1_chr3_-_58792633_58792775	0.06671064136420608	GUAAACA	ENSMUST00000055636.13|Clrn1|ENSMUSG00000043850.16|clarin 1	ENSMUST00000072551.7|Clrn1|ENSMUSG00000043850.16|clarin 1	ENSMUST00000051408.8|Clrn1|ENSMUSG00000043850.16|clarin 1
mm39_v1_chr8_+_109441276_109441276	0.06641027339038356	GUAAACA	ENSMUST00000043896.10|Zfhx3|ENSMUSG00000038872.11|zinc finger homeobox 3
mm39_v1_chr8_-_78451055_78451113	0.06621304551872664	GUAAACA	ENSMUST00000034029.8|Ednra|ENSMUSG00000031616.8|endothelin receptor type A
mm39_v1_chr5_-_36641456_36641650	0.06606794876760531	GUAAACA	ENSMUST00000119916.2|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B	ENSMUST00000031097.8|Tada2b|ENSMUSG00000029196.10|transcriptional adaptor 2B
mm39_v1_chr1_+_51328265_51328301	0.06581570853601809	GUAAACA	ENSMUST00000051572.8|Cavin2|ENSMUSG00000045954.8|caveolae associated 2
mm39_v1_chr16_-_23807602_23807602	0.06510921511171283	GUAAACA	ENSMUST00000023151.6|Bcl6|ENSMUSG00000022508.6|B cell leukemia/lymphoma 6
mm39_v1_chr17_-_48235560_48235577	0.06506342816522889	GUAAACA	ENSMUST00000113265.8|Foxp4|ENSMUSG00000023991.17|forkhead box P4
mm39_v1_chr14_-_65499835_65499941	0.064655801778201	GUAAACA	ENSMUST00000131309.3|Fzd3|ENSMUSG00000007989.8|frizzled class receptor 3
mm39_v1_chr17_+_6157154_6157182	0.06465450594527355	GUAAACA	ENSMUST00000149756.8|Tulp4|ENSMUSG00000034377.11|tubby like protein 4
mm39_v1_chr14_+_30673409_30673426	0.06450884515102644	GUAAACA	ENSMUST00000050171.10|Nek4|ENSMUSG00000021918.11|NIMA (never in mitosis gene a)-related expressed kinase 4
mm39_v1_chr12_+_112688597_112688673	0.06254618515254368	GUAAACA	ENSMUST00000101018.11|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000092279.7|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000179041.8|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B	ENSMUST00000222711.2|Cep170b|ENSMUSG00000072825.12|centrosomal protein 170B
mm39_v1_chr2_+_31462780_31462841	0.061735647428416446	GUAAACA	ENSMUST00000137889.7|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000194386.6|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3	ENSMUST00000055244.13|Fubp3|ENSMUSG00000026843.16|far upstream element (FUSE) binding protein 3
mm39_v1_chr3_-_80710097_80710147	0.06061281545408898	GUAAACA	ENSMUST00000075316.10|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)	ENSMUST00000107745.8|Gria2|ENSMUSG00000033981.15|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm39_v1_chr10_-_45346297_45346386	0.0603468467355334	GUAAACA	ENSMUST00000079390.7|Lin28b|ENSMUSG00000063804.9|lin-28 homolog B (C. elegans)
mm39_v1_chr15_-_50753061_50753118	0.06013640383455161	GUAAACA	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr2_-_79287095_79287102	0.059404796653493894	GUAAACA	ENSMUST00000041099.5|Neurod1|ENSMUSG00000034701.10|neurogenic differentiation 1
mm39_v1_chr11_+_107438751_107438794	0.059303985410756675	GUAAACA	ENSMUST00000100305.8|Helz|ENSMUSG00000020721.17|helicase with zinc finger domain	ENSMUST00000075012.8|Helz|ENSMUSG00000020721.17|helicase with zinc finger domain	ENSMUST00000106746.8|Helz|ENSMUSG00000020721.17|helicase with zinc finger domain
mm39_v1_chr19_-_56996617_56996660	0.05861089062862846	GUAAACA	ENSMUST00000118800.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000111584.9|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000122359.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2	ENSMUST00000148049.8|Afap1l2|ENSMUSG00000025083.19|actin filament associated protein 1-like 2
mm39_v1_chr5_-_92457862_92457883	0.05854627976384163	GUAAACA	ENSMUST00000031364.5|Sdad1|ENSMUSG00000029415.5|SDA1 domain containing 1
mm39_v1_chr2_+_71811526_71811631	0.058144264830554335	GUAAACA	ENSMUST00000090826.12|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4	ENSMUST00000102698.10|Rapgef4|ENSMUSG00000049044.17|Rap guanine nucleotide exchange factor (GEF) 4
mm39_v1_chr17_+_24689366_24689455	0.057684754474537824	GUAAACA	ENSMUST00000053024.8|Pgp|ENSMUSG00000043445.8|phosphoglycolate phosphatase
mm39_v1_chr4_-_149783097_149783165	0.057397134117815496	GUAAACA	ENSMUST00000038859.14|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	ENSMUST00000105690.9|Pik3cd|ENSMUSG00000039936.19|phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta
mm39_v1_chr11_-_117859997_117860018	0.05733956430881823	GUAAACA	ENSMUST00000054002.4|Socs3|ENSMUSG00000053113.4|suppressor of cytokine signaling 3
mm39_v1_chr9_+_74860335_74860374	0.05705601109077029	GUAAACA	ENSMUST00000170846.8|Fam214a|ENSMUSG00000034858.17|family with sequence similarity 214, member A
mm39_v1_chr1_+_132345293_132345348	0.05601063349718778	GUAAACA	ENSMUST00000045110.14|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase	ENSMUST00000188389.2|Dstyk|ENSMUSG00000042046.16|dual serine/threonine and tyrosine protein kinase
mm39_v1_chr15_-_96540760_96540865	0.05599768136562781	GUAAACA	ENSMUST00000088452.11|Slc38a1|ENSMUSG00000023169.16|solute carrier family 38, member 1
mm39_v1_chr12_-_73160181_73160230	0.05572123771098255	GUAAACA	ENSMUST00000043208.8|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4	ENSMUST00000175693.3|Six4|ENSMUSG00000034460.10|sine oculis-related homeobox 4
mm39_v1_chr4_-_82777746_82777917	0.05544439896541134	GUAAACA	ENSMUST00000156055.2|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21	ENSMUST00000030110.15|Zdhhc21|ENSMUSG00000028403.16|zinc finger, DHHC domain containing 21
mm39_v1_chr1_-_132470672_132470692	0.05521435684490626	GUAAACA	ENSMUST00000086521.11|Cntn2|ENSMUSG00000053024.15|contactin 2
mm39_v1_chr16_+_91444730_91444794	0.05407421367094039	GUAAACA	ENSMUST00000119368.8|Son|ENSMUSG00000022961.19|Son DNA binding protein	ENSMUST00000114037.9|Son|ENSMUSG00000022961.19|Son DNA binding protein	ENSMUST00000114036.9|Son|ENSMUSG00000022961.19|Son DNA binding protein	ENSMUST00000122302.8|Son|ENSMUSG00000022961.19|Son DNA binding protein
mm39_v1_chr1_-_52766615_52766632	0.053091744049091005	GUAAACA	ENSMUST00000156876.8|Mfsd6|ENSMUSG00000041439.16|major facilitator superfamily domain containing 6	ENSMUST00000087701.4|Mfsd6|ENSMUSG00000041439.16|major facilitator superfamily domain containing 6
mm39_v1_chr17_+_36176485_36176735	0.05192882126541195	GUAAACA	ENSMUST00000127442.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18	ENSMUST00000144382.8|Ppp1r18|ENSMUSG00000034595.18|protein phosphatase 1, regulatory subunit 18
mm39_v1_chr15_-_88618391_88618444	0.050863841559993454	GUAAACA	ENSMUST00000109381.9|Brd1|ENSMUSG00000022387.18|bromodomain containing 1
mm39_v1_chr4_+_21879660_21879726	0.050799853217409215	GUAAACA	ENSMUST00000029909.3|Coq3|ENSMUSG00000028247.3|coenzyme Q3 methyltransferase
mm39_v1_chr10_+_29087602_29087646	0.050421052625360216	GUAAACA	ENSMUST00000092627.6|9330159F19Rik|ENSMUSG00000004360.10|RIKEN cDNA 9330159F19 gene
mm39_v1_chr4_+_21776261_21776297	0.05015575892854475	GUAAACA	ENSMUST00000065111.15|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000040429.12|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45	ENSMUST00000148304.8|Usp45|ENSMUSG00000040455.18|ubiquitin specific petidase 45
mm39_v1_chr9_+_102594867_102594929	0.04950746966322012	GUAAACA	ENSMUST00000035121.14|Amotl2|ENSMUSG00000032531.16|angiomotin-like 2
mm39_v1_chrX_-_73129195_73129296	0.04882175888351306	GUAAACA	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr15_-_93173032_93173060	0.048596568935395136	GUAAACA	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr14_+_47710005_47710082	0.047670815036353724	GUAAACA	ENSMUST00000043112.9|Fbxo34|ENSMUSG00000037536.15|F-box protein 34	ENSMUST00000163324.8|Fbxo34|ENSMUSG00000037536.15|F-box protein 34	ENSMUST00000228668.2|Fbxo34|ENSMUSG00000037536.15|F-box protein 34	ENSMUST00000168833.9|Fbxo34|ENSMUSG00000037536.15|F-box protein 34
mm39_v1_chr10_-_127587576_127587606	0.04726310511850133	GUAAACA	ENSMUST00000079692.6|Gpr182|ENSMUSG00000058396.8|G protein-coupled receptor 182
mm39_v1_chr8_+_70992334_70992360	0.04715070059678891	GUAAACA	ENSMUST00000093454.8|Ell|ENSMUSG00000070002.8|elongation factor RNA polymerase II
mm39_v1_chr7_-_134539993_134540159	0.04689916011918761	GUAAACA	ENSMUST00000171394.3|Insyn2a|ENSMUSG00000073805.6|inhibitory synaptic factor 2A
mm39_v1_chr5_+_121535999_121536072	0.04661217381568555	GUAAACA	ENSMUST00000042163.15|Naa25|ENSMUSG00000042719.18|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm39_v1_chr13_+_77856801_77856857	0.04595897438447607	GUAAACA	ENSMUST00000163257.9|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000091459.12|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000099358.5|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000225623.2|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A	ENSMUST00000224908.2|Fam172a|ENSMUSG00000064138.15|family with sequence similarity 172, member A
mm39_v1_chr2_+_127205117_127205137	0.04592759574838565	GUAAACA	ENSMUST00000104934.2|Adra2b|ENSMUSG00000058620.6|adrenergic receptor, alpha 2b
mm39_v1_chr15_+_10177709_10177741	0.045702775734074004	GUAAACA	ENSMUST00000124470.8|Prlr|ENSMUSG00000005268.21|prolactin receptor
mm39_v1_chr1_+_128031055_128031097	0.04560018711417497	GUAAACA	ENSMUST00000188381.7|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1	ENSMUST00000187900.7|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1	ENSMUST00000036288.11|R3hdm1|ENSMUSG00000056211.14|R3H domain containing 1
mm39_v1_chr11_+_102175757_102175857	0.04509831197463553	GUAAACA	ENSMUST00000036376.13|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2	ENSMUST00000100387.11|Tmub2|ENSMUSG00000034757.16|transmembrane and ubiquitin-like domain containing 2
mm39_v1_chr16_+_13176238_13176334	0.04379296463117734	GUAAACA	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr5_-_140375010_140375019	0.043096197234541736	GUAAACA	ENSMUST00000031539.12|Snx8|ENSMUSG00000029560.13|sorting nexin 8
mm39_v1_chr10_-_119075910_119076002	0.042355611809053596	GUAAACA	ENSMUST00000020315.13|Cand1|ENSMUSG00000020114.13|cullin associated and neddylation disassociated 1
mm39_v1_chr2_+_22785534_22785581	0.04232215131732182	GUAAACA	ENSMUST00000053729.14|Pdss1|ENSMUSG00000026784.15|prenyl (solanesyl) diphosphate synthase, subunit 1
mm39_v1_chr9_-_86577940_86578012	0.04161071416978927	GUAAACA	ENSMUST00000034989.15|Me1|ENSMUSG00000032418.16|malic enzyme 1, NADP(+)-dependent, cytosolic
mm39_v1_chr12_-_80159768_80159793	0.03956907661444138	GUAAACA	ENSMUST00000219642.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000165114.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000218835.2|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1	ENSMUST00000021552.3|Zfp36l1|ENSMUSG00000021127.8|zinc finger protein 36, C3H type-like 1
mm39_v1_chr5_-_76452365_76452398	0.03879289339028737	GUAAACA	ENSMUST00000075159.5|Clock|ENSMUSG00000029238.12|circadian locomotor output cycles kaput
mm39_v1_chr9_-_14956704_14956798	0.03851925488306078	GUAAACA	ENSMUST00000164273.9|Panx1|ENSMUSG00000031934.15|pannexin 1
mm39_v1_chr7_+_89779564_89779724	0.038040369556052445	GUAAACA	ENSMUST00000208742.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein	ENSMUST00000049537.9|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr8_-_80126120_80126168	0.037809845172685125	GUAAACA	ENSMUST00000066091.14|Smad1|ENSMUSG00000031681.17|SMAD family member 1	ENSMUST00000109885.8|Smad1|ENSMUSG00000031681.17|SMAD family member 1
mm39_v1_chrX_-_107877909_107877987	0.03758089549218937	GUAAACA	ENSMUST00000101283.4|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3	ENSMUST00000150434.8|Brwd3|ENSMUSG00000063663.12|bromodomain and WD repeat domain containing 3
mm39_v1_chr5_+_93241287_93241310	0.03679911012308551	GUAAACA	ENSMUST00000074733.11|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000201700.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202196.4|Septin11|ENSMUSG00000058013.12|septin 11	ENSMUST00000202308.4|Septin11|ENSMUSG00000058013.12|septin 11
mm39_v1_chr6_+_86381201_86381222	0.03647970333927151	GUAAACA	ENSMUST00000095754.10|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1	ENSMUST00000095753.9|Tia1|ENSMUSG00000071337.12|cytotoxic granule-associated RNA binding protein 1
mm39_v1_chr2_-_37537224_37537297	0.03617760036953983	GUAAACA	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr11_-_88609048_88609136	0.035520627560494615	GUAAACA	ENSMUST00000107909.8|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr2_+_165497157_165497273	0.03500666264106478	GUAAACA	ENSMUST00000063433.8|Eya2|ENSMUSG00000017897.19|EYA transcriptional coactivator and phosphatase 2
mm39_v1_chr5_+_86952072_86952135	0.034604842623905716	GUAAACA	ENSMUST00000119339.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1	ENSMUST00000120498.8|Ythdc1|ENSMUSG00000035851.15|YTH domain containing 1
mm39_v1_chrX_+_135950334_135950415	0.03411585979991211	GUAAACA	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr3_+_16237371_16237447	0.033923513609566754	GUAAACA	ENSMUST00000108345.9|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000191774.6|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3	ENSMUST00000108346.5|Ythdf3|ENSMUSG00000047213.15|YTH N6-methyladenosine RNA binding protein 3
mm39_v1_chr5_+_121987050_121987069	0.033843658300638124	GUAAACA	ENSMUST00000056654.8|Pheta1|ENSMUSG00000044134.10|PH domain containing endocytic trafficking adaptor 1	ENSMUST00000198155.2|Pheta1|ENSMUSG00000044134.10|PH domain containing endocytic trafficking adaptor 1
mm39_v1_chr10_+_39608094_39608137	0.03337431347751612	GUAAACA	ENSMUST00000019986.13|Rev3l|ENSMUSG00000019841.16|REV3 like, DNA directed polymerase zeta catalytic subunit
mm39_v1_chr4_-_129566505_129566567	0.03336058956486856	GUAAACA	ENSMUST00000102590.11|Kpna6|ENSMUSG00000003731.14|karyopherin (importin) alpha 6
mm39_v1_chr14_+_30201569_30201642	0.03334957486330232	GUAAACA	ENSMUST00000022535.9|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A	ENSMUST00000223658.2|Dcp1a|ENSMUSG00000021962.10|decapping mRNA 1A
mm39_v1_chr7_+_34885782_34885833	0.03333027264672158	GUAAACA	ENSMUST00000135452.8|Slc7a10|ENSMUSG00000030495.13|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	ENSMUST00000001854.12|Slc7a10|ENSMUSG00000030495.13|solute carrier family 7 (cationic amino acid transporter, y+ system), member 10
mm39_v1_chr2_-_33261411_33261496	0.033005417381440465	GUAAACA	ENSMUST00000131298.7|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000091039.5|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000042615.13|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1
mm39_v1_chr17_-_52139693_52139706	0.0321503599085192	GUAAACA	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr10_-_66932685_66932738	0.03163691231927666	GUAAACA	ENSMUST00000020023.9|Reep3|ENSMUSG00000019873.9|receptor accessory protein 3
mm39_v1_chr9_+_78020554_78020659	0.03151886927740748	GUAAACA	ENSMUST00000009972.6|Cilk1|ENSMUSG00000009828.16|ciliogenesis associated kinase 1	ENSMUST00000117330.8|Cilk1|ENSMUSG00000009828.16|ciliogenesis associated kinase 1	ENSMUST00000044551.8|Cilk1|ENSMUSG00000009828.16|ciliogenesis associated kinase 1
mm39_v1_chr3_+_101284391_101284421	0.03060210276737315	GUAAACA	ENSMUST00000043983.11|Igsf3|ENSMUSG00000042035.12|immunoglobulin superfamily, member 3
mm39_v1_chr6_+_97187650_97187690	0.03042245682114375	GUAAACA	ENSMUST00000044681.7|Arl6ip5|ENSMUSG00000035199.7|ADP-ribosylation factor-like 6 interacting protein 5
mm39_v1_chr10_+_19810037_19810272	0.030249842230061077	GUAAACA	ENSMUST00000095806.10|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5	ENSMUST00000120259.8|Map3k5|ENSMUSG00000071369.12|mitogen-activated protein kinase kinase kinase 5
mm39_v1_chr6_-_40413056_40413085	0.030073359614170264	GUAAACA	ENSMUST00000039008.10|Dennd11|ENSMUSG00000037172.15|DENN domain containing 11	ENSMUST00000101492.10|Dennd11|ENSMUSG00000037172.15|DENN domain containing 11
mm39_v1_chr8_+_80366247_80366333	0.029856157603869636	GUAAACA	ENSMUST00000173078.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4	ENSMUST00000173286.8|Otud4|ENSMUSG00000036990.14|OTU domain containing 4
mm39_v1_chr2_+_112097087_112097207	0.029687554222744512	GUAAACA	ENSMUST00000110987.9|Slc12a6|ENSMUSG00000027130.16|solute carrier family 12, member 6	ENSMUST00000028549.14|Slc12a6|ENSMUSG00000027130.16|solute carrier family 12, member 6
mm39_v1_chr6_+_37847721_37847892	0.028883072358253853	GUAAACA	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr13_+_111822712_111822745	0.0287153365543258	GUAAACA	ENSMUST00000109272.9|Mier3|ENSMUSG00000032727.15|MIER family member 3
mm39_v1_chr3_-_103698853_103698879	0.028572278857847817	GUAAACA	ENSMUST00000118317.8|Hipk1|ENSMUSG00000008730.18|homeodomain interacting protein kinase 1
mm39_v1_chr11_+_53410552_53410627	0.028147667790612237	GUAAACA	ENSMUST00000108987.8|Septin8|ENSMUSG00000018398.19|septin 8	ENSMUST00000121334.8|Septin8|ENSMUSG00000018398.19|septin 8	ENSMUST00000117061.8|Septin8|ENSMUSG00000018398.19|septin 8
mm39_v1_chr4_+_117109204_117109254	0.02773938173428	GUAAACA	ENSMUST00000125943.8|Tmem53|ENSMUSG00000048772.16|transmembrane protein 53	ENSMUST00000106434.8|Tmem53|ENSMUSG00000048772.16|transmembrane protein 53
mm39_v1_chr4_+_155648157_155648200	0.027711367000269185	GUAAACA	ENSMUST00000105613.10|Nadk|ENSMUSG00000029063.17|NAD kinase
mm39_v1_chr12_+_80837284_80837348	0.024016180997105827	GUAAACA	ENSMUST00000220238.2|Susd6|ENSMUSG00000021133.10|sushi domain containing 6	ENSMUST00000068519.7|Susd6|ENSMUSG00000021133.10|sushi domain containing 6
mm39_v1_chr1_-_121255753_121255778	0.023944331212093432	GUAAACA	ENSMUST00000003818.14|Insig2|ENSMUSG00000003721.15|insulin induced gene 2
mm39_v1_chr13_+_107083613_107083675	0.02389750887797042	GUAAACA	ENSMUST00000022203.10|Dimt1|ENSMUSG00000021692.10|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
mm39_v1_chr11_-_79394904_79394915	0.023835061037490692	GUAAACA	ENSMUST00000164465.3|Omg|ENSMUSG00000049612.11|oligodendrocyte myelin glycoprotein
mm39_v1_chr1_+_151447124_151447191	0.023343226175513553	GUAAACA	ENSMUST00000148810.8|Niban1|ENSMUSG00000026483.14|niban apoptosis regulator 1
mm39_v1_chr16_+_37688744_37688844	0.022861736549897378	GUAAACA	ENSMUST00000078717.7|Lrrc58|ENSMUSG00000034158.10|leucine rich repeat containing 58
mm39_v1_chr11_-_51647290_51647445	0.02256708214622451	GUAAACA	ENSMUST00000109097.9|Sec24a|ENSMUSG00000036391.17|Sec24 related gene family, member A (S. cerevisiae)
mm39_v1_chr15_-_102165884_102165952	0.022425433877759894	GUAAACA	ENSMUST00000043172.15|Rarg|ENSMUSG00000001288.16|retinoic acid receptor, gamma
mm39_v1_chr2_+_91033230_91033281	0.022109853262048857	GUAAACA	ENSMUST00000150403.8|Acp2|ENSMUSG00000002103.17|acid phosphatase 2, lysosomal	ENSMUST00000002172.14|Acp2|ENSMUSG00000002103.17|acid phosphatase 2, lysosomal	ENSMUST00000238832.2|Acp2|ENSMUSG00000002103.17|acid phosphatase 2, lysosomal	ENSMUST00000239169.2|Acp2|ENSMUSG00000002103.17|acid phosphatase 2, lysosomal	ENSMUST00000155418.2|Acp2|ENSMUSG00000002103.17|acid phosphatase 2, lysosomal
mm39_v1_chr13_-_54835508_54835623	0.021879638566274496	GUAAACA	ENSMUST00000177950.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44	ENSMUST00000146931.8|Rnf44|ENSMUSG00000034928.17|ring finger protein 44
mm39_v1_chr13_-_100688949_100689006	0.02177092149539653	GUAAACA	ENSMUST00000159515.2|Ocln|ENSMUSG00000021638.13|occludin	ENSMUST00000160859.8|Ocln|ENSMUSG00000021638.13|occludin	ENSMUST00000069756.11|Ocln|ENSMUSG00000021638.13|occludin
mm39_v1_chr2_-_180929828_180929828	0.020762638273563477	GUAAACA	ENSMUST00000049032.13|Gmeb2|ENSMUSG00000038705.14|glucocorticoid modulatory element binding protein 2
mm39_v1_chr9_-_114762986_114763067	0.02061109895132363	GUAAACA	ENSMUST00000146623.8|Gpd1l|ENSMUSG00000050627.14|glycerol-3-phosphate dehydrogenase 1-like
mm39_v1_chr7_+_122814031_122814075	0.02037812251855762	GUAAACA	ENSMUST00000033035.13|Slc5a11|ENSMUSG00000030769.16|solute carrier family 5 (sodium/glucose cotransporter), member 11
mm39_v1_chr11_-_118931731_118931795	0.020324631235079653	GUAAACA	ENSMUST00000026663.8|Cbx8|ENSMUSG00000025578.10|chromobox 8
mm39_v1_chr15_-_103275190_103275225	0.020076214307437768	GUAAACA	ENSMUST00000023128.8|Itga5|ENSMUSG00000000555.9|integrin alpha 5 (fibronectin receptor alpha)
mm39_v1_chr15_-_98779269_98779361	0.019383033530626925	GUAAACA	ENSMUST00000024518.11|Rhebl1|ENSMUSG00000023755.11|Ras homolog enriched in brain like 1
mm39_v1_chr5_-_122917341_122917496	0.019258983715815324	GUAAACA	ENSMUST00000198257.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000199599.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000196742.2|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000200109.5|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta	ENSMUST00000111668.8|Camkk2|ENSMUSG00000029471.14|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm39_v1_chr2_-_157988303_157988356	0.019133947929401807	GUAAACA	ENSMUST00000103122.10|Tgm2|ENSMUSG00000037820.16|transglutaminase 2, C polypeptide
mm39_v1_chr13_+_95112852_95112934	0.019062745185046952	GUAAACA	ENSMUST00000160115.8|Wdr41|ENSMUSG00000042015.18|WD repeat domain 41	ENSMUST00000222995.2|Wdr41|ENSMUSG00000042015.18|WD repeat domain 41	ENSMUST00000160801.8|Wdr41|ENSMUSG00000042015.18|WD repeat domain 41	ENSMUST00000056512.14|Wdr41|ENSMUSG00000042015.18|WD repeat domain 41
mm39_v1_chr12_+_105750952_105751131	0.018980762286072077	GUAAACA	ENSMUST00000109901.9|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000168186.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000163473.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170540.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000166735.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha	ENSMUST00000170002.8|Papola|ENSMUSG00000021111.16|poly (A) polymerase alpha
mm39_v1_chr1_+_86510614_86510660	0.018662395612678025	GUAAACA	ENSMUST00000121534.8|Cops7b|ENSMUSG00000026240.13|COP9 signalosome subunit 7B	ENSMUST00000149542.2|Cops7b|ENSMUSG00000026240.13|COP9 signalosome subunit 7B
mm39_v1_chr3_-_154036180_154036296	0.01816584498757143	GUAAACA	ENSMUST00000177846.8|Lhx8|ENSMUSG00000096225.8|LIM homeobox protein 8
mm39_v1_chr6_-_55658242_55658255	0.017837056001223883	GUAAACA	ENSMUST00000044767.10|Neurod6|ENSMUSG00000037984.10|neurogenic differentiation 6
mm39_v1_chr8_-_122379631_122379652	0.017820880631171657	GUAAACA	ENSMUST00000046386.5|Zcchc14|ENSMUSG00000061410.7|zinc finger, CCHC domain containing 14
mm39_v1_chr3_-_84489783_84489841	0.017644725690655644	GUAAACA	ENSMUST00000107687.9|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1	ENSMUST00000098990.10|Arfip1|ENSMUSG00000074513.10|ADP-ribosylation factor interacting protein 1
mm39_v1_chr18_-_39623698_39623771	0.01759273483568289	GUAAACA	ENSMUST00000115567.8|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr4_+_119112692_119112706	0.01599241262046893	GUAAACA	ENSMUST00000094823.4|Cldn19|ENSMUSG00000066058.12|claudin 19
mm39_v1_chr9_-_59393893_59393919	0.014833654181577435	GUAAACA	ENSMUST00000171975.8|Arih1|ENSMUSG00000025234.12|ariadne RBR E3 ubiquitin protein ligase 1
mm39_v1_chr7_-_70010341_70010494	0.014530277464139726	GUAAACA	ENSMUST00000032768.15|Nr2f2|ENSMUSG00000030551.15|nuclear receptor subfamily 2, group F, member 2
mm39_v1_chr10_-_22607136_22607346	0.014492730679328847	GUAAACA	ENSMUST00000238910.2|ENSMUSG00000118528.2|ENSMUSG00000118528.2|novel protein	ENSMUST00000127698.8|Tbpl1|ENSMUSG00000071359.14|TATA box binding protein-like 1
mm39_v1_chr2_+_102488985_102489014	0.0142322113885878	GUAAACA	ENSMUST00000080210.10|Slc1a2|ENSMUSG00000005089.16|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm39_v1_chr4_+_97665843_97665870	0.014124424175335411	GUAAACA	ENSMUST00000075448.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A	ENSMUST00000092532.13|Nfia|ENSMUSG00000028565.19|nuclear factor I/A
mm39_v1_chr13_-_114595475_114595493	0.01409168602859185	GUAAACA	ENSMUST00000022287.8|Fst|ENSMUSG00000021765.10|follistatin	ENSMUST00000223640.3|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr3_-_51468236_51468300	0.013741920893266101	GUAAACA	ENSMUST00000037141.9|Setd7|ENSMUSG00000037111.10|SET domain containing (lysine methyltransferase) 7
mm39_v1_chr2_+_156562989_156563004	0.013357276869949815	GUAAACA	ENSMUST00000000094.14|Dlgap4|ENSMUSG00000061689.16|DLG associated protein 4
mm39_v1_chrX_-_105647282_105647292	0.01313067267303193	GUAAACA	ENSMUST00000113480.2|Cysltr1|ENSMUSG00000052821.4|cysteinyl leukotriene receptor 1
mm39_v1_chr8_+_88925821_88925852	0.013014812366659703	GUAAACA	ENSMUST00000066748.10|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000119033.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B	ENSMUST00000118952.8|Tent4b|ENSMUSG00000036779.13|terminal nucleotidyltransferase 4B
mm39_v1_chr16_+_56942050_56942066	0.012841876375617027	GUAAACA	ENSMUST00000166897.3|Tomm70a|ENSMUSG00000022752.10|translocase of outer mitochondrial membrane 70A
mm39_v1_chr6_-_92920466_92920488	0.012115512844865853	GUAAACA	ENSMUST00000113438.8|Adamts9|ENSMUSG00000030022.15|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9
mm39_v1_chr13_-_29137673_29137696	0.011841995957181838	GUAAACA	ENSMUST00000067230.6|Sox4|ENSMUSG00000076431.5|SRY (sex determining region Y)-box 4
mm39_v1_chr1_+_33758937_33759080	0.011273190943637374	GUAAACA	ENSMUST00000088287.10|Rab23|ENSMUSG00000004768.15|RAB23, member RAS oncogene family
mm39_v1_chr8_+_104897074_104897247	0.010858263605336416	GUAAACA	ENSMUST00000164076.3|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000171018.8|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000167633.8|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000093245.13|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1	ENSMUST00000212979.2|Bean1|ENSMUSG00000031872.15|brain expressed, associated with Nedd4, 1
mm39_v1_chr2_-_139908615_139908725	0.01046866330120282	GUAAACA	ENSMUST00000046656.9|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1	ENSMUST00000099304.4|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1	ENSMUST00000110079.9|Tasp1|ENSMUSG00000039033.12|taspase, threonine aspartase 1
mm39_v1_chr5_-_129085610_129085660	0.010151402087664187	GUAAACA	ENSMUST00000031378.14|Stx2|ENSMUSG00000029428.14|syntaxin 2
mm39_v1_chr17_-_24292453_24292464	0.009848065419281361	GUAAACA	ENSMUST00000017090.6|Kctd5|ENSMUSG00000016946.7|potassium channel tetramerisation domain containing 5
mm39_v1_chr8_-_126625029_126625061	0.009531770471977154	GUAAACA	ENSMUST00000047239.13|Pcnx2|ENSMUSG00000060212.14|pecanex homolog 2	ENSMUST00000131127.3|Pcnx2|ENSMUSG00000060212.14|pecanex homolog 2
mm39_v1_chr15_-_31531122_31531215	0.009390358461820458	GUAAACA	ENSMUST00000090227.6|Marchf6|ENSMUSG00000039100.11|membrane associated ring-CH-type finger 6
mm39_v1_chr9_+_72714156_72714156	0.009233353532049042	GUAAACA	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr6_-_59001455_59001534	0.008996086214821064	GUAAACA	ENSMUST00000089860.12|Fam13a|ENSMUSG00000037709.14|family with sequence similarity 13, member A
mm39_v1_chr13_+_13612136_13612136	0.008325993622262827	GUAAACA	ENSMUST00000005532.9|Nid1|ENSMUSG00000005397.9|nidogen 1
mm39_v1_chr11_-_17903861_17903897	0.008236226991601451	GUAAACA	ENSMUST00000076661.7|Etaa1|ENSMUSG00000016984.8|Ewing tumor-associated antigen 1
mm39_v1_chr10_+_127575407_127575457	0.00823120826474562	GUAAACA	ENSMUST00000054287.9|Zbtb39|ENSMUSG00000044617.9|zinc finger and BTB domain containing 39
mm39_v1_chr5_+_150597204_150597269	0.008139120868006363	GUAAACA	ENSMUST00000202170.4|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B	ENSMUST00000016569.11|Pds5b|ENSMUSG00000034021.16|PDS5 cohesin associated factor B
mm39_v1_chr4_+_57434247_57434369	0.008052445320113032	GUAAACA	ENSMUST00000102905.8|Pakap|ENSMUSG00000090053.10|paralemmin A kinase anchor protein
mm39_v1_chr18_-_63520195_63520260	0.008012839624221387	GUAAACA	ENSMUST00000047480.13|Piezo2|ENSMUSG00000041482.18|piezo-type mechanosensitive ion channel component 2
mm39_v1_chr9_-_44792575_44792621	0.007719375046314678	GUAAACA	ENSMUST00000114689.8|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000002095.11|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A	ENSMUST00000128768.3|Kmt2a|ENSMUSG00000002028.14|lysine (K)-specific methyltransferase 2A
mm39_v1_chr4_+_132291369_132291389	0.007602170361588377	GUAAACA	ENSMUST00000070690.8|Ptafr|ENSMUSG00000056529.8|platelet-activating factor receptor
mm39_v1_chr2_-_120234539_120234584	0.006937054785014271	GUAAACA	ENSMUST00000090042.12|Tmem87a|ENSMUSG00000033808.17|transmembrane protein 87A	ENSMUST00000110729.2|Tmem87a|ENSMUSG00000033808.17|transmembrane protein 87A	ENSMUST00000090046.12|Tmem87a|ENSMUSG00000033808.17|transmembrane protein 87A
mm39_v1_chr12_+_56742413_56742459	0.006440433448584449	GUAAACA	ENSMUST00000001538.10|Pax9|ENSMUSG00000001497.19|paired box 9
mm39_v1_chr1_-_58625431_58625482	0.006238409884287839	GUAAACA	ENSMUST00000161000.2|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B	ENSMUST00000161600.8|Fam126b|ENSMUSG00000038174.15|family with sequence similarity 126, member B
mm39_v1_chr4_+_11191726_11191790	0.00560462996838635	GUAAACA	ENSMUST00000029866.16|Ccne2|ENSMUSG00000028212.17|cyclin E2	ENSMUST00000108324.4|Ccne2|ENSMUSG00000028212.17|cyclin E2
mm39_v1_chr11_-_82719850_82719869	0.005366363094823792	GUAAACA	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr6_-_72416531_72416548	0.005310875645630945	GUAAACA	ENSMUST00000205335.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000206692.2|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha	ENSMUST00000059472.10|Mat2a|ENSMUSG00000053907.11|methionine adenosyltransferase II, alpha
mm39_v1_chr9_-_56835633_56835676	0.005281216640700169	GUAAACA	ENSMUST00000050916.7|Snx33|ENSMUSG00000032733.7|sorting nexin 33
mm39_v1_chr8_-_40739994_40739994	0.004550569493918598	GUAAACA	ENSMUST00000034014.14|Fgf20|ENSMUSG00000031603.15|fibroblast growth factor 20
mm39_v1_chrX_+_52001108_52001238	0.004256703796203292	GUAAACA	ENSMUST00000078944.13|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000101587.10|Phf6|ENSMUSG00000025626.17|PHD finger protein 6	ENSMUST00000154864.4|Phf6|ENSMUSG00000025626.17|PHD finger protein 6
mm39_v1_chrX_+_81992467_81992521	0.004208954881903846	GUAAACA	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr13_+_54769592_54769606	0.003400268417597721	GUAAACA	ENSMUST00000126071.9|Faf2|ENSMUSG00000025873.17|Fas associated factor family member 2
mm39_v1_chr11_-_105834953_105835053	0.003131472514805754	GUAAACA	ENSMUST00000184086.8|Cyb561|ENSMUSG00000019590.17|cytochrome b-561
mm39_v1_chr1_-_13062873_13062892	0.002360336242658234	GUAAACA	ENSMUST00000188454.7|Slco5a1|ENSMUSG00000025938.17|solute carrier organic anion transporter family, member 5A1
mm39_v1_chr13_+_16189041_16189060	0.002041292660676244	GUAAACA	ENSMUST00000164993.2|Inhba|ENSMUSG00000041324.15|inhibin beta-A
mm39_v1_chr2_-_25498459_25498533	0.0018388402488531516	GUAAACA	ENSMUST00000058137.9|Rabl6|ENSMUSG00000015087.15|RAB, member RAS oncogene family-like 6
mm39_v1_chr10_+_39245746_39245808	0.0013149532533669316	GUAAACA	ENSMUST00000063091.13|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000099967.10|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene	ENSMUST00000126486.8|Fyn|ENSMUSG00000019843.15|Fyn proto-oncogene
mm39_v1_chr11_+_43419586_43419623	0.0009033898278351986	GUAAACA	ENSMUST00000050574.7|Ccnjl|ENSMUSG00000044707.8|cyclin J-like
mm39_v1_chr18_+_63841756_63841801	0.0008835848303591224	GUAAACA	ENSMUST00000072726.7|Wdr7|ENSMUSG00000040560.11|WD repeat domain 7	ENSMUST00000235648.2|Wdr7|ENSMUSG00000040560.11|WD repeat domain 7	ENSMUST00000236879.2|Wdr7|ENSMUSG00000040560.11|WD repeat domain 7
mm39_v1_chr13_-_111945499_111945552	0.0002780290178089278	GUAAACA	ENSMUST00000109267.9|Map3k1|ENSMUSG00000021754.18|mitogen-activated protein kinase kinase kinase 1
mm39_v1_chr8_-_110894836_110894853	0.00010734044952011732	GUAAACA	ENSMUST00000003754.8|Calb2|ENSMUSG00000003657.10|calbindin 2	ENSMUST00000212297.2|Calb2|ENSMUSG00000003657.10|calbindin 2
