mm39_v1_chr14_-_98406977_98407031	0.10573671153220476	GUAACAG	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chr11_+_77107006_77107113	0.03809688781858049	GUAACAG	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chr5_-_124387812_124387845	0.03677181820161973	GUAACAG	ENSMUST00000162812.8|Pitpnm2|ENSMUSG00000029406.16|phosphatidylinositol transfer protein, membrane-associated 2
mm39_v1_chr19_-_23425757_23425768	0.03489637333777126	GUAACAG	ENSMUST00000036069.8|Mamdc2|ENSMUSG00000033207.8|MAM domain containing 2
mm39_v1_chr16_-_76170714_76170741	0.0307642797188654	GUAACAG	ENSMUST00000231585.2|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1	ENSMUST00000121927.8|Nrip1|ENSMUSG00000048490.15|nuclear receptor interacting protein 1
mm39_v1_chr14_+_26359191_26359229	0.02905696491578331	GUAACAG	ENSMUST00000022429.9|Arf4|ENSMUSG00000021877.13|ADP-ribosylation factor 4
mm39_v1_chr14_-_10185523_10185590	0.028803633353523966	GUAACAG	ENSMUST00000223702.2|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene	ENSMUST00000223762.2|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene	ENSMUST00000112669.10|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene	ENSMUST00000163392.3|3830406C13Rik|ENSMUSG00000033111.17|RIKEN cDNA 3830406C13 gene
mm39_v1_chr12_+_59178072_59178255	0.026583782933281272	GUAACAG	ENSMUST00000176464.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000170992.9|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2	ENSMUST00000176322.8|Mia2|ENSMUSG00000021000.18|MIA SH3 domain ER export factor 2
mm39_v1_chr16_-_62607105_62607161	0.02202969204908881	GUAACAG	ENSMUST00000152553.2|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3	ENSMUST00000063089.12|Nsun3|ENSMUSG00000050312.13|NOL1/NOP2/Sun domain family member 3
mm39_v1_chr11_-_95966477_95966516	0.020871547511787207	GUAACAG	ENSMUST00000090541.12|Atp5g1|ENSMUSG00000006057.16|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)
mm39_v1_chr2_-_73722874_73722900	0.02050175124974398	GUAACAG	ENSMUST00000136958.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112010.9|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000128531.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2	ENSMUST00000112017.8|Atf2|ENSMUSG00000027104.19|activating transcription factor 2
mm39_v1_chr9_+_102988940_102989065	0.020381915751610635	GUAACAG	ENSMUST00000189134.2|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family	ENSMUST00000035155.8|Rab6b|ENSMUSG00000032549.8|RAB6B, member RAS oncogene family
mm39_v1_chr5_+_102629240_102629257	0.020134202017841503	GUAACAG	ENSMUST00000073302.12|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24	ENSMUST00000094559.9|Arhgap24|ENSMUSG00000057315.15|Rho GTPase activating protein 24
mm39_v1_chrX_+_67722147_67722159	0.01928902964155995	GUAACAG	ENSMUST00000088546.12|Fmr1|ENSMUSG00000000838.18|FMRP translational regulator 1
mm39_v1_chr4_+_134847949_134847973	0.01905352967387386	GUAACAG	ENSMUST00000056977.14|Runx3|ENSMUSG00000070691.11|runt related transcription factor 3
mm39_v1_chr19_+_6096606_6096692	0.018174649811307547	GUAACAG	ENSMUST00000138532.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000129081.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin	ENSMUST00000156550.8|Syvn1|ENSMUSG00000024807.19|synovial apoptosis inhibitor 1, synoviolin
mm39_v1_chr3_+_135144202_135144241	0.017637524654106264	GUAACAG	ENSMUST00000166033.6|Ube2d3|ENSMUSG00000078578.10|ubiquitin-conjugating enzyme E2D 3
mm39_v1_chr1_-_16689660_16689713	0.017501078493612827	GUAACAG	ENSMUST00000117146.9|Ube2w|ENSMUSG00000025939.20|ubiquitin-conjugating enzyme E2W (putative)
mm39_v1_chr2_-_33261411_33261496	0.016782040300446638	GUAACAG	ENSMUST00000131298.7|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000091039.5|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1	ENSMUST00000042615.13|Ralgps1|ENSMUSG00000038831.17|Ral GEF with PH domain and SH3 binding motif 1
mm39_v1_chr2_+_49341498_49341571	0.016257281169457904	GUAACAG	ENSMUST00000092123.11|Epc2|ENSMUSG00000069495.13|enhancer of polycomb homolog 2
mm39_v1_chr7_-_25358406_25358406	0.016188267422373146	GUAACAG	ENSMUST00000071329.8|Bckdha|ENSMUSG00000060376.8|branched chain ketoacid dehydrogenase E1, alpha polypeptide
mm39_v1_chr5_+_124577952_124578061	0.01616616022579951	GUAACAG	ENSMUST00000059580.11|Kmt5a|ENSMUSG00000049327.18|lysine methyltransferase 5A
mm39_v1_chr3_-_58433313_58433318	0.01596342358842858	GUAACAG	ENSMUST00000029385.9|Serp1|ENSMUSG00000027808.9|stress-associated endoplasmic reticulum protein 1
mm39_v1_chr5_+_23639432_23639478	0.015634275727205754	GUAACAG	ENSMUST00000094962.9|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E	ENSMUST00000115128.8|Kmt2e|ENSMUSG00000029004.16|lysine (K)-specific methyltransferase 2E
mm39_v1_chr15_-_50753061_50753118	0.015308372670807091	GUAACAG	ENSMUST00000165201.9|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1	ENSMUST00000184458.8|Trps1|ENSMUSG00000038679.17|transcriptional repressor GATA binding 1
mm39_v1_chr15_+_58805605_58805685	0.015005248516323323	GUAACAG	ENSMUST00000022980.5|Ndufb9|ENSMUSG00000022354.5|NADH:ubiquinone oxidoreductase subunit B9
mm39_v1_chr19_-_10217968_10218125	0.014443391545564956	GUAACAG	ENSMUST00000189897.2|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000186056.7|Myrf|ENSMUSG00000036098.16|myelin regulatory factor	ENSMUST00000088013.12|Myrf|ENSMUSG00000036098.16|myelin regulatory factor
mm39_v1_chr7_+_67602565_67602576	0.014234610025422043	GUAACAG	ENSMUST00000005671.10|Igf1r|ENSMUSG00000005533.11|insulin-like growth factor I receptor
mm39_v1_chrX_-_13712746_13712826	0.014121833346343558	GUAACAG	ENSMUST00000115436.9|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000033321.11|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)	ENSMUST00000115438.10|Cask|ENSMUSG00000031012.18|calcium/calmodulin-dependent serine protein kinase (MAGUK family)
mm39_v1_chr7_+_112278520_112278532	0.01370503282913247	GUAACAG	ENSMUST00000084705.13|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239442.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000239404.2|Tead1|ENSMUSG00000055320.19|TEA domain family member 1	ENSMUST00000059768.18|Tead1|ENSMUSG00000055320.19|TEA domain family member 1
mm39_v1_chr19_+_53588808_53588869	0.013548224750644587	GUAACAG	ENSMUST00000025930.10|Smc3|ENSMUSG00000024974.11|structural maintenance of chromosomes 3
mm39_v1_chr18_+_35731658_35731729	0.013374938957497336	GUAACAG	ENSMUST00000041314.17|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236666.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000236020.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2	ENSMUST00000235400.2|Paip2|ENSMUSG00000037058.17|polyadenylate-binding protein-interacting protein 2
mm39_v1_chr7_-_24672083_24672179	0.013273910908176109	GUAACAG	ENSMUST00000076961.9|Rabac1|ENSMUSG00000003380.12|Rab acceptor 1 (prenylated)
mm39_v1_chr13_+_108452866_108452892	0.01307086595542253	GUAACAG	ENSMUST00000051594.12|Depdc1b|ENSMUSG00000021697.13|DEP domain containing 1B
mm39_v1_chr11_+_101207021_101207123	0.012845880006179478	GUAACAG	ENSMUST00000142640.8|Psme3|ENSMUSG00000078652.10|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	ENSMUST00000019470.14|Psme3|ENSMUSG00000078652.10|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm39_v1_chrX_-_37653396_37653432	0.012738366200035212	GUAACAG	ENSMUST00000016681.15|Cul4b|ENSMUSG00000031095.16|cullin 4B
mm39_v1_chr1_+_131838294_131838310	0.012593031625268947	GUAACAG	ENSMUST00000062264.8|Nucks1|ENSMUSG00000026434.13|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm39_v1_chr4_-_108637979_108638000	0.012578201692070889	GUAACAG	ENSMUST00000106657.8|Zfyve9|ENSMUSG00000034557.15|zinc finger, FYVE domain containing 9
mm39_v1_chr12_+_71877838_71877948	0.012451504192248051	GUAACAG	ENSMUST00000223272.2|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1	ENSMUST00000085299.4|Daam1|ENSMUSG00000034574.11|dishevelled associated activator of morphogenesis 1
mm39_v1_chr15_+_96185399_96185487	0.011652347556638198	GUAACAG	ENSMUST00000134985.9|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)	ENSMUST00000096250.5|Arid2|ENSMUSG00000033237.20|AT rich interactive domain 2 (ARID, RFX-like)
mm39_v1_chr8_+_129085719_129085787	0.011504744689848601	GUAACAG	ENSMUST00000026917.10|Nrp1|ENSMUSG00000025810.10|neuropilin 1
mm39_v1_chr6_-_13677928_13677974	0.011244398009757458	GUAACAG	ENSMUST00000203078.2|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2	ENSMUST00000045235.8|Bmt2|ENSMUSG00000042742.8|base methyltransferase of 25S rRNA 2
mm39_v1_chr12_-_85421467_85421621	0.01098978621732754	GUAACAG	ENSMUST00000040766.9|Tmed10|ENSMUSG00000021248.10|transmembrane p24 trafficking protein 10
mm39_v1_chr1_-_64776890_64776915	0.010945208655373588	GUAACAG	ENSMUST00000116133.4|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5	ENSMUST00000063982.7|Fzd5|ENSMUSG00000045005.10|frizzled class receptor 5
mm39_v1_chr7_-_127490139_127490144	0.010745096175470559	GUAACAG	ENSMUST00000205300.2|Prss53|ENSMUSG00000044139.13|protease, serine 53	ENSMUST00000121394.3|Prss53|ENSMUSG00000044139.13|protease, serine 53
mm39_v1_chr13_+_55740948_55740990	0.010511599091171839	GUAACAG	ENSMUST00000109905.5|Tmed9|ENSMUSG00000058569.9|transmembrane p24 trafficking protein 9
mm39_v1_chr1_-_10038030_10038157	0.010454149690378731	GUAACAG	ENSMUST00000185184.2|Tcf24|ENSMUSG00000099032.3|transcription factor 24
mm39_v1_chr6_+_145156860_145156933	0.010416034186825435	GUAACAG	ENSMUST00000111725.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111726.10|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000039729.5|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111723.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111724.8|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111721.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1	ENSMUST00000111719.2|Etfrf1|ENSMUSG00000040370.14|electron transfer flavoprotein regulatory factor 1
mm39_v1_chr1_+_166828982_166828999	0.010241929248285545	GUAACAG	ENSMUST00000165874.8|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B	ENSMUST00000190081.7|Fam78b|ENSMUSG00000060568.15|family with sequence similarity 78, member B
mm39_v1_chr14_+_77394173_77394265	0.010104534975914068	GUAACAG	ENSMUST00000022589.9|Enox1|ENSMUSG00000022012.10|ecto-NOX disulfide-thiol exchanger 1
mm39_v1_chr13_-_38712387_38712466	0.010035472136267798	GUAACAG	ENSMUST00000035988.16|Txndc5|ENSMUSG00000038991.18|thioredoxin domain containing 5
mm39_v1_chr15_-_86070338_86070385	0.009964353847204685	GUAACAG	ENSMUST00000044332.16|Cerk|ENSMUSG00000035891.17|ceramide kinase
mm39_v1_chr11_-_100713348_100713405	0.009381912542000345	GUAACAG	ENSMUST00000107358.9|Stat5b|ENSMUSG00000020919.12|signal transducer and activator of transcription 5B
mm39_v1_chr8_-_26609153_26609260	0.009312740270144358	GUAACAG	ENSMUST00000037182.14|Hook3|ENSMUSG00000037234.18|hook microtubule tethering protein 3
mm39_v1_chr11_-_106811507_106811599	0.009101271776280789	GUAACAG	ENSMUST00000103067.10|Smurf2|ENSMUSG00000018363.17|SMAD specific E3 ubiquitin protein ligase 2
mm39_v1_chrX_+_10583629_10583730	0.008999577500364744	GUAACAG	ENSMUST00000115524.8|Mid1ip1|ENSMUSG00000008035.13|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	ENSMUST00000008179.7|Mid1ip1|ENSMUSG00000008035.13|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	ENSMUST00000156321.2|Mid1ip1|ENSMUSG00000008035.13|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm39_v1_chr14_+_34395845_34395890	0.008602755562982636	GUAACAG	ENSMUST00000048263.14|Wapl|ENSMUSG00000041408.19|WAPL cohesin release factor
mm39_v1_chr2_-_156728988_156729003	0.008361792091415118	GUAACAG	ENSMUST00000029164.9|Sla2|ENSMUSG00000027636.12|Src-like-adaptor 2
mm39_v1_chr12_-_84265609_84265663	0.008050897332324506	GUAACAG	ENSMUST00000046266.13|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein	ENSMUST00000220974.2|Mideas|ENSMUSG00000042507.16|mitotic deacetylase associated SANT domain protein
mm39_v1_chr7_-_110682204_110682244	0.007679367533347574	GUAACAG	ENSMUST00000161051.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000160132.8|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2	ENSMUST00000162415.9|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr17_-_26240827_26240840	0.007532022992947962	GUAACAG	ENSMUST00000118828.8|Rab11fip3|ENSMUSG00000037098.19|RAB11 family interacting protein 3 (class II)
mm39_v1_chr17_+_74835290_74835369	0.007199618815081407	GUAACAG	ENSMUST00000180037.8|Birc6|ENSMUSG00000024073.17|baculoviral IAP repeat-containing 6
mm39_v1_chr17_-_65920481_65920550	0.007009065825295566	GUAACAG	ENSMUST00000024897.10|Vapa|ENSMUSG00000024091.10|vesicle-associated membrane protein, associated protein A
mm39_v1_chr2_-_104240679_104240679	0.0069625133546197026	GUAACAG	ENSMUST00000136156.9|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene	ENSMUST00000141159.9|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene	ENSMUST00000089726.10|D430041D05Rik|ENSMUSG00000068373.16|RIKEN cDNA D430041D05 gene
mm39_v1_chr4_+_138920210_138920271	0.006632798570169265	GUAACAG	ENSMUST00000102508.10|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta	ENSMUST00000131912.8|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta	ENSMUST00000102507.10|Capzb|ENSMUSG00000028745.19|capping protein (actin filament) muscle Z-line, beta
mm39_v1_chr10_-_121933276_121933276	0.006625250841541352	GUAACAG	ENSMUST00000140299.3|Rxylt1|ENSMUSG00000034620.18|ribitol xylosyltransferase 1
mm39_v1_chr4_-_133273243_133273320	0.0066004187837542085	GUAACAG	ENSMUST00000030665.7|Nudc|ENSMUSG00000028851.7|nudC nuclear distribution protein
mm39_v1_chr15_-_64184485_64184537	0.006356559214423398	GUAACAG	ENSMUST00000177083.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1	ENSMUST00000177371.8|Asap1|ENSMUSG00000022377.17|ArfGAP with SH3 domain, ankyrin repeat and PH domain1
mm39_v1_chr10_-_61288437_61288589	0.0062496979217674525	GUAACAG	ENSMUST00000167087.2|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2	ENSMUST00000020288.15|Eif4ebp2|ENSMUSG00000020091.16|eukaryotic translation initiation factor 4E binding protein 2
mm39_v1_chr5_+_63806451_63806451	0.006169703305257622	GUAACAG	ENSMUST00000159584.3|Nwd2|ENSMUSG00000090061.10|NACHT and WD repeat domain containing 2
mm39_v1_chr8_-_69848167_69848205	0.006031840945756411	GUAACAG	ENSMUST00000072427.7|Gm10033|ENSMUSG00000110444.3|predicted gene 10033	ENSMUST00000213012.2|Gm10033|ENSMUSG00000110444.3|predicted gene 10033	ENSMUST00000239456.2|Gm10033|ENSMUSG00000110444.3|predicted gene 10033
mm39_v1_chr18_-_36648850_36648866	0.005846780104165833	GUAACAG	ENSMUST00000025363.7|Hbegf|ENSMUSG00000024486.7|heparin-binding EGF-like growth factor
mm39_v1_chr5_-_25703700_25703841	0.005710012500069878	GUAACAG	ENSMUST00000173073.8|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000045291.14|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C	ENSMUST00000173174.2|Kmt2c|ENSMUSG00000038056.16|lysine (K)-specific methyltransferase 2C
mm39_v1_chr9_-_101128976_101129003	0.005686901601220456	GUAACAG	ENSMUST00000075941.12|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr15_+_38869415_38869443	0.005675597286788676	GUAACAG	ENSMUST00000179165.9|Fzd6|ENSMUSG00000022297.16|frizzled class receptor 6
mm39_v1_chr1_+_185187000_185187045	0.005630315563749358	GUAACAG	ENSMUST00000061093.7|Slc30a10|ENSMUSG00000026614.8|solute carrier family 30, member 10
mm39_v1_chr16_+_11140740_11140775	0.0055529305942426796	GUAACAG	ENSMUST00000180792.8|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr18_-_77801624_77801673	0.005509379049804056	GUAACAG	ENSMUST00000074653.6|8030462N17Rik|ENSMUSG00000047466.11|RIKEN cDNA 8030462N17 gene
mm39_v1_chr2_-_63928339_63928367	0.005464582360883552	GUAACAG	ENSMUST00000131615.9|Fign|ENSMUSG00000075324.14|fidgetin
mm39_v1_chr8_-_89770790_89770823	0.005461863064932229	GUAACAG	ENSMUST00000034090.8|Sall1|ENSMUSG00000031665.8|spalt like transcription factor 1
mm39_v1_chr10_+_7556948_7556990	0.005333471371175943	GUAACAG	ENSMUST00000165952.9|Lats1|ENSMUSG00000040021.14|large tumor suppressor
mm39_v1_chr7_+_127084283_127084393	0.005210661401042303	GUAACAG	ENSMUST00000048896.8|Fbrs|ENSMUSG00000042423.10|fibrosin
mm39_v1_chr2_+_121786444_121786498	0.005176611820874144	GUAACAG	ENSMUST00000036647.13|Ctdspl2|ENSMUSG00000033411.17|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm39_v1_chr3_-_129854477_129854556	0.005175076171675562	GUAACAG	ENSMUST00000001079.15|Sec24b|ENSMUSG00000001052.16|Sec24 related gene family, member B (S. cerevisiae)
mm39_v1_chr16_+_34842764_34842811	0.005148509957162503	GUAACAG	ENSMUST00000061156.10|Hacd2|ENSMUSG00000035376.11|3-hydroxyacyl-CoA dehydratase 2
mm39_v1_chr1_+_93163553_93163569	0.0047881307434557915	GUAACAG	ENSMUST00000062202.14|Sned1|ENSMUSG00000047793.14|sushi, nidogen and EGF-like domains 1
mm39_v1_chr10_-_121146940_121147094	0.004668152679159654	GUAACAG	ENSMUST00000064107.7|Tbc1d30|ENSMUSG00000052302.7|TBC1 domain family, member 30
mm39_v1_chr10_-_128727542_128727587	0.004629785709217166	GUAACAG	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chrX_+_81992467_81992521	0.004463789650162977	GUAACAG	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr8_+_121811091_121811125	0.004457351335804284	GUAACAG	ENSMUST00000181504.2|Foxf1|ENSMUSG00000042812.6|forkhead box F1
mm39_v1_chr7_-_133826817_133826865	0.0043816116031356	GUAACAG	ENSMUST00000067680.11|Adam12|ENSMUSG00000054555.12|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm39_v1_chr16_-_22084700_22084755	0.004330216355158569	GUAACAG	ENSMUST00000161286.8|Tra2b|ENSMUSG00000022858.17|transformer 2 beta
mm39_v1_chr5_+_103573367_103573367	0.004139692990056316	GUAACAG	ENSMUST00000048957.11|Ptpn13|ENSMUSG00000034573.15|protein tyrosine phosphatase, non-receptor type 13
mm39_v1_chr3_+_58322119_58322161	0.004074015047260207	GUAACAG	ENSMUST00000099090.7|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2	ENSMUST00000199164.2|Tsc22d2|ENSMUSG00000027806.10|TSC22 domain family, member 2
mm39_v1_chr3_+_88439616_88439703	0.004067422449850116	GUAACAG	ENSMUST00000172699.2|Mex3a|ENSMUSG00000074480.5|mex3 RNA binding family member A
mm39_v1_chr5_-_135378896_135378903	0.003973969100818518	GUAACAG	ENSMUST00000201534.2|Fkbp6|ENSMUSG00000040013.12|FK506 binding protein 6	ENSMUST00000044972.11|Fkbp6|ENSMUSG00000040013.12|FK506 binding protein 6
mm39_v1_chr1_+_66214445_66214508	0.0038512334411503527	GUAACAG	ENSMUST00000114017.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2	ENSMUST00000114015.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr6_-_148113872_148113889	0.0038231304093548604	GUAACAG	ENSMUST00000136008.8|Ergic2|ENSMUSG00000030304.12|ERGIC and golgi 2
mm39_v1_chr7_+_120276801_120276868	0.003799868082742854	GUAACAG	ENSMUST00000208454.2|Mosmo|ENSMUSG00000046096.8|modulator of smoothened	ENSMUST00000060175.8|Mosmo|ENSMUSG00000046096.8|modulator of smoothened
mm39_v1_chr10_-_43050516_43050565	0.0036559950538332083	GUAACAG	ENSMUST00000040275.9|Sobp|ENSMUSG00000038248.9|sine oculis binding protein
mm39_v1_chr6_-_99643723_99643784	0.0036548809406324466	GUAACAG	ENSMUST00000032151.3|Eif4e3|ENSMUSG00000093661.2|eukaryotic translation initiation factor 4E member 3
mm39_v1_chr14_+_111912529_111912556	0.0036487887787526635	GUAACAG	ENSMUST00000042767.9|Slitrk5|ENSMUSG00000033214.11|SLIT and NTRK-like family, member 5
mm39_v1_chr4_+_80828883_80828922	0.0036396139782669985	GUAACAG	ENSMUST00000055922.4|Lurap1l|ENSMUSG00000048706.4|leucine rich adaptor protein 1-like
mm39_v1_chr10_+_111000613_111000627	0.0035178535027360295	GUAACAG	ENSMUST00000105275.9|Osbpl8|ENSMUSG00000020189.16|oxysterol binding protein-like 8
mm39_v1_chr15_-_96358612_96358724	0.0034042105148605352	GUAACAG	ENSMUST00000047835.8|Scaf11|ENSMUSG00000033228.9|SR-related CTD-associated factor 11
mm39_v1_chr2_+_69727563_69727591	0.0033782340663614093	GUAACAG	ENSMUST00000055758.16|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3	ENSMUST00000112251.9|Ubr3|ENSMUSG00000044308.18|ubiquitin protein ligase E3 component n-recognin 3
mm39_v1_chr9_-_91247809_91247827	0.0030544639038276146	GUAACAG	ENSMUST00000034927.13|Zic1|ENSMUSG00000032368.15|zinc finger protein of the cerebellum 1
mm39_v1_chr15_-_93493758_93493795	0.002978036513896633	GUAACAG	ENSMUST00000048982.11|Prickle1|ENSMUSG00000036158.13|prickle planar cell polarity protein 1
mm39_v1_chr11_-_116197523_116197576	0.002936389450155961	GUAACAG	ENSMUST00000133468.2|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7	ENSMUST00000106411.10|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7	ENSMUST00000106413.10|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7	ENSMUST00000021147.14|Exoc7|ENSMUSG00000020792.16|exocyst complex component 7
mm39_v1_chr12_-_100486950_100487112	0.0029309465008082623	GUAACAG	ENSMUST00000223020.2|Ttc7b|ENSMUSG00000033530.9|tetratricopeptide repeat domain 7B	ENSMUST00000062957.8|Ttc7b|ENSMUSG00000033530.9|tetratricopeptide repeat domain 7B
mm39_v1_chr18_+_64473091_64473114	0.002916445237497801	GUAACAG	ENSMUST00000175965.10|Onecut2|ENSMUSG00000045991.20|one cut domain, family member 2
mm39_v1_chr2_-_115896279_115896334	0.002653887150370989	GUAACAG	ENSMUST00000110907.8|Meis2|ENSMUSG00000027210.21|Meis homeobox 2	ENSMUST00000110908.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr14_+_47120311_47120446	0.002577329431183161	GUAACAG	ENSMUST00000022386.15|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4	ENSMUST00000228404.2|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4	ENSMUST00000100672.11|Samd4|ENSMUSG00000021838.18|sterile alpha motif domain containing 4
mm39_v1_chr13_-_96269076_96269136	0.00256026500902816	GUAACAG	ENSMUST00000161263.8|Sv2c|ENSMUSG00000051111.17|synaptic vesicle glycoprotein 2c
mm39_v1_chr1_+_63485002_63485102	0.0025431987563764957	GUAACAG	ENSMUST00000087374.10|Adam23|ENSMUSG00000025964.16|a disintegrin and metallopeptidase domain 23
mm39_v1_chr2_+_119156265_119156298	0.0025405699546372407	GUAACAG	ENSMUST00000102517.4|Dll4|ENSMUSG00000027314.7|delta like canonical Notch ligand 4
mm39_v1_chr2_+_112097087_112097207	0.0025346803288065363	GUAACAG	ENSMUST00000110987.9|Slc12a6|ENSMUSG00000027130.16|solute carrier family 12, member 6	ENSMUST00000028549.14|Slc12a6|ENSMUSG00000027130.16|solute carrier family 12, member 6
mm39_v1_chrX_+_72683020_72683041	0.0024551368138535984	GUAACAG	ENSMUST00000019701.9|Dusp9|ENSMUSG00000031383.9|dual specificity phosphatase 9
mm39_v1_chr2_-_74489763_74489901	0.0024454262008876716	GUAACAG	ENSMUST00000173623.2|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2	ENSMUST00000001867.13|Evx2|ENSMUSG00000001815.16|even-skipped homeobox 2
mm39_v1_chr13_+_48414582_48414704	0.002400802748345133	GUAACAG	ENSMUST00000021810.3|Id4|ENSMUSG00000021379.3|inhibitor of DNA binding 4
mm39_v1_chr10_+_51553852_51553906	0.0023435965149232276	GUAACAG	ENSMUST00000122922.10|Rfx6|ENSMUSG00000019900.20|regulatory factor X, 6	ENSMUST00000219364.2|Rfx6|ENSMUSG00000019900.20|regulatory factor X, 6
mm39_v1_chr3_+_123240562_123240562	0.0022261763837123686	GUAACAG	ENSMUST00000029603.10|Prss12|ENSMUSG00000027978.10|protease, serine 12 neurotrypsin (motopsin)
mm39_v1_chr2_-_75534985_75535023	0.0021620017843268368	GUAACAG	ENSMUST00000102672.5|Nfe2l2|ENSMUSG00000015839.7|nuclear factor, erythroid derived 2, like 2
mm39_v1_chr12_+_4967376_4967438	0.0021541997289485225	GUAACAG	ENSMUST00000045664.7|Atad2b|ENSMUSG00000052812.6|ATPase family, AAA domain containing 2B
mm39_v1_chr9_+_27702243_27702299	0.00213678012011388	GUAACAG	ENSMUST00000115243.9|Opcml|ENSMUSG00000062257.14|opioid binding protein/cell adhesion molecule-like
mm39_v1_chr17_+_75312520_75312563	0.0021025787861199377	GUAACAG	ENSMUST00000234490.2|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1	ENSMUST00000001927.12|Ltbp1|ENSMUSG00000001870.17|latent transforming growth factor beta binding protein 1
mm39_v1_chr10_-_70435114_70435132	0.0020642565187843293	GUAACAG	ENSMUST00000046513.10|Phyhipl|ENSMUSG00000037747.10|phytanoyl-CoA hydroxylase interacting protein-like
mm39_v1_chr12_-_21423551_21423594	0.0020423272054397065	GUAACAG	ENSMUST00000101551.10|Adam17|ENSMUSG00000052593.17|a disintegrin and metallopeptidase domain 17
mm39_v1_chr7_-_109585649_109585676	0.001965141284959104	GUAACAG	ENSMUST00000094097.12|Tmem41b|ENSMUSG00000047554.15|transmembrane protein 41B
mm39_v1_chr7_-_115637970_115637985	0.0018838855002106325	GUAACAG	ENSMUST00000166877.8|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr15_-_58953838_58953867	0.0018814108397418802	GUAACAG	ENSMUST00000080371.8|Mtss1|ENSMUSG00000022353.11|MTSS I-BAR domain containing 1
mm39_v1_chr3_-_51184895_51184996	0.0018645184538747582	GUAACAG	ENSMUST00000108051.8|Elf2|ENSMUSG00000037174.19|E74-like factor 2	ENSMUST00000108053.9|Elf2|ENSMUSG00000037174.19|E74-like factor 2
mm39_v1_chrX_+_165021897_165021909	0.0018231809605449851	GUAACAG	ENSMUST00000112235.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chr7_+_18828519_18828558	0.0018189871883855491	GUAACAG	ENSMUST00000049454.6|Six5|ENSMUSG00000040841.6|sine oculis-related homeobox 5
mm39_v1_chr4_-_35845204_35845204	0.0016128027318376068	GUAACAG	ENSMUST00000164772.8|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2	ENSMUST00000065173.9|Lingo2|ENSMUSG00000045083.15|leucine rich repeat and Ig domain containing 2
mm39_v1_chr4_+_33924632_33924651	0.0015862321368288381	GUAACAG	ENSMUST00000057188.7|Cnr1|ENSMUSG00000044288.7|cannabinoid receptor 1 (brain)
mm39_v1_chr3_-_110050312_110050326	0.0015744108125451727	GUAACAG	ENSMUST00000156177.9|Ntng1|ENSMUSG00000059857.16|netrin G1
mm39_v1_chr10_-_23225781_23225817	0.0015548757372302949	GUAACAG	ENSMUST00000092665.12|Eya4|ENSMUSG00000010461.17|EYA transcriptional coactivator and phosphatase 4
mm39_v1_chr4_+_108736260_108736283	0.0015476584606818032	GUAACAG	ENSMUST00000106650.9|Rab3b|ENSMUSG00000003411.11|RAB3B, member RAS oncogene family
mm39_v1_chr5_+_124678758_124678849	0.0015366414209729451	GUAACAG	ENSMUST00000060226.11|Tmed2|ENSMUSG00000029390.14|transmembrane p24 trafficking protein 2
mm39_v1_chr14_-_49304110_49304132	0.0014541925282969808	GUAACAG	ENSMUST00000162175.9|Exoc5|ENSMUSG00000061244.15|exocyst complex component 5
mm39_v1_chr1_-_86287080_86287122	0.0014449457900572267	GUAACAG	ENSMUST00000027438.8|Ncl|ENSMUSG00000026234.13|nucleolin
mm39_v1_chr4_-_122854966_122854986	0.0014174624493878138	GUAACAG	ENSMUST00000030408.12|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A	ENSMUST00000127047.2|Mfsd2a|ENSMUSG00000028655.12|major facilitator superfamily domain containing 2A
mm39_v1_chr1_-_4566619_4566643	0.0013693325661668014	GUAACAG	ENSMUST00000192913.2|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17	ENSMUST00000027035.10|Sox17|ENSMUSG00000025902.14|SRY (sex determining region Y)-box 17
mm39_v1_chr11_-_100363551_100363585	0.0013158641797903728	GUAACAG	ENSMUST00000056665.4|Klhl11|ENSMUSG00000048732.6|kelch-like 11
mm39_v1_chr11_-_84416340_84416369	0.0013002236332668269	GUAACAG	ENSMUST00000018842.14|Lhx1|ENSMUSG00000018698.16|LIM homeobox protein 1
mm39_v1_chr10_+_20188207_20188238	0.0012926977269125356	GUAACAG	ENSMUST00000092678.10|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1	ENSMUST00000043881.12|Bclaf1|ENSMUSG00000037608.17|BCL2-associated transcription factor 1
mm39_v1_chr12_-_57592907_57592926	0.0012610038587760697	GUAACAG	ENSMUST00000044380.8|Foxa1|ENSMUSG00000035451.8|forkhead box A1
mm39_v1_chr9_-_86762467_86762520	0.0012462880740228685	GUAACAG	ENSMUST00000074501.12|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000239074.2|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000098495.10|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000036347.13|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91	ENSMUST00000074468.13|Snap91|ENSMUSG00000033419.17|synaptosomal-associated protein 91
mm39_v1_chrX_-_56549092_56549117	0.0012404646414187128	GUAACAG	ENSMUST00000057645.6|Gpr101|ENSMUSG00000036357.6|G protein-coupled receptor 101
mm39_v1_chr1_-_64160557_64160650	0.001185597670376239	GUAACAG	ENSMUST00000055001.10|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)	ENSMUST00000114086.8|Klf7|ENSMUSG00000025959.14|Kruppel-like factor 7 (ubiquitous)
mm39_v1_chr3_+_134534754_134534776	0.0011564327777818914	GUAACAG	ENSMUST00000029822.6|Tacr3|ENSMUSG00000028172.6|tachykinin receptor 3
mm39_v1_chr18_+_35695199_35695313	0.0011556120178728257	GUAACAG	ENSMUST00000236860.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000166793.10|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237780.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000236507.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000235960.2|Matr3|ENSMUSG00000037236.17|matrin 3	ENSMUST00000237061.2|Matr3|ENSMUSG00000037236.17|matrin 3
mm39_v1_chr3_-_32791296_32791296	0.0011306663280780428	GUAACAG	ENSMUST00000043966.8|Mrpl47|ENSMUSG00000037531.9|mitochondrial ribosomal protein L47
mm39_v1_chr6_+_114374897_114375047	0.0011273458115616754	GUAACAG	ENSMUST00000088987.3|Hrh1|ENSMUSG00000053004.10|histamine receptor H1	ENSMUST00000160212.2|Hrh1|ENSMUSG00000053004.10|histamine receptor H1
mm39_v1_chr7_+_63094489_63094510	0.001125942492303136	GUAACAG	ENSMUST00000058476.14|Otud7a|ENSMUSG00000033510.15|OTU domain containing 7A
mm39_v1_chr14_+_123897383_123897621	0.001116157434280397	GUAACAG	ENSMUST00000049681.14|Itgbl1|ENSMUSG00000032925.17|integrin, beta-like 1
mm39_v1_chr2_-_171885386_171885386	0.0010701324621232831	GUAACAG	ENSMUST00000087950.4|Cbln4|ENSMUSG00000067578.4|cerebellin 4 precursor protein
mm39_v1_chr3_-_141687987_141688025	0.0010514515308369021	GUAACAG	ENSMUST00000029948.15|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr11_+_101443674_101443727	0.0010397163311866662	GUAACAG	ENSMUST00000107213.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor	ENSMUST00000107208.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor	ENSMUST00000107212.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor	ENSMUST00000127421.8|Nbr1|ENSMUSG00000017119.21|NBR1, autophagy cargo receptor
mm39_v1_chrX_+_100419965_100419984	0.0010353515048866313	GUAACAG	ENSMUST00000119080.8|Gjb1|ENSMUSG00000047797.15|gap junction protein, beta 1
mm39_v1_chr19_+_36532061_36532115	0.0010130184176015626	GUAACAG	ENSMUST00000169036.9|Hectd2|ENSMUSG00000041180.14|HECT domain E3 ubiquitin protein ligase 2	ENSMUST00000047247.12|Hectd2|ENSMUSG00000041180.14|HECT domain E3 ubiquitin protein ligase 2
mm39_v1_chr10_-_117681864_117681940	0.0009670962381902844	GUAACAG	ENSMUST00000064667.9|Rap1b|ENSMUSG00000052681.9|RAS related protein 1b
mm39_v1_chr5_+_37025810_37025914	0.0008801866084657887	GUAACAG	ENSMUST00000031003.11|Ppp2r2c|ENSMUSG00000029120.11|protein phosphatase 2, regulatory subunit B, gamma
mm39_v1_chrX_+_10351360_10351402	0.0007427397411559832	GUAACAG	ENSMUST00000076354.13|Tspan7|ENSMUSG00000058254.13|tetraspanin 7	ENSMUST00000115526.2|Tspan7|ENSMUSG00000058254.13|tetraspanin 7
mm39_v1_chr9_+_72714156_72714156	0.0007398486176511032	GUAACAG	ENSMUST00000055535.9|Prtg|ENSMUSG00000036030.10|protogenin
mm39_v1_chr5_+_91039092_91039112	0.0007132628676287557	GUAACAG	ENSMUST00000031327.9|Cxcl1|ENSMUSG00000029380.12|chemokine (C-X-C motif) ligand 1
mm39_v1_chr8_+_91555449_91555470	0.0006857758325119914	GUAACAG	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr10_-_95252712_95252723	0.0006766442191439549	GUAACAG	ENSMUST00000020215.16|Socs2|ENSMUSG00000020027.19|suppressor of cytokine signaling 2
mm39_v1_chr9_+_70450130_70450152	0.0006484450551553432	GUAACAG	ENSMUST00000049263.9|Sltm|ENSMUSG00000032212.11|SAFB-like, transcription modulator
mm39_v1_chr8_-_45715049_45715095	0.0005974322681912026	GUAACAG	ENSMUST00000034064.5|F11|ENSMUSG00000031645.5|coagulation factor XI
mm39_v1_chr16_+_32219324_32219324	0.0005498170182712127	GUAACAG	ENSMUST00000115149.3|Tm4sf19|ENSMUSG00000079625.3|transmembrane 4 L six family member 19
mm39_v1_chr4_-_134262509_134262625	0.0005391967954849945	GUAACAG	ENSMUST00000102550.10|Mtfr1l|ENSMUSG00000046671.19|mitochondrial fission regulator 1-like
mm39_v1_chr13_+_95012107_95012119	0.0005298330950370211	GUAACAG	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr15_-_95426419_95426523	0.0005087043838736703	GUAACAG	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr18_-_47501897_47501945	0.0005006174209464118	GUAACAG	ENSMUST00000019791.14|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000115449.9|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr1_+_5153300_5153388	0.0004809661593194644	GUAACAG	ENSMUST00000044369.13|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H	ENSMUST00000194676.6|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H	ENSMUST00000192029.6|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H	ENSMUST00000192698.3|Atp6v1h|ENSMUSG00000033793.13|ATPase, H+ transporting, lysosomal V1 subunit H
mm39_v1_chr2_-_18397547_18397649	0.0004545720327905282	GUAACAG	ENSMUST00000091418.12|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1	ENSMUST00000166495.8|Dnajc1|ENSMUSG00000026740.13|DnaJ heat shock protein family (Hsp40) member C1
mm39_v1_chr2_-_35994072_35994085	0.00045449117281342406	GUAACAG	ENSMUST00000112961.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6	ENSMUST00000112966.10|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr1_+_183766572_183766583	0.0004388097334920751	GUAACAG	ENSMUST00000048655.8|Dusp10|ENSMUSG00000039384.9|dual specificity phosphatase 10
mm39_v1_chr6_+_51500881_51500915	0.00043117265658176493	GUAACAG	ENSMUST00000049152.15|Snx10|ENSMUSG00000038301.16|sorting nexin 10
mm39_v1_chr2_-_20973692_20973768	0.00039612401057121776	GUAACAG	ENSMUST00000114594.8|Arhgap21|ENSMUSG00000036591.17|Rho GTPase activating protein 21
mm39_v1_chr12_-_15866763_15866923	0.00037294742714623005	GUAACAG	ENSMUST00000020922.8|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221215.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2	ENSMUST00000221518.2|Trib2|ENSMUSG00000020601.9|tribbles pseudokinase 2
mm39_v1_chr18_-_16942289_16942384	0.00027644976842195883	GUAACAG	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr4_+_53440516_53440684	0.00024467837990942414	GUAACAG	ENSMUST00000107651.9|Slc44a1|ENSMUSG00000028412.18|solute carrier family 44, member 1	ENSMUST00000107647.8|Slc44a1|ENSMUSG00000028412.18|solute carrier family 44, member 1
mm39_v1_chr4_-_109333866_109333924	0.0002249044503046594	GUAACAG	ENSMUST00000030284.10|Rnf11|ENSMUSG00000028557.11|ring finger protein 11
mm39_v1_chr7_-_45750153_45750194	0.00021205313894853735	GUAACAG	ENSMUST00000180081.3|Kcnj11|ENSMUSG00000096146.3|potassium inwardly rectifying channel, subfamily J, member 11
mm39_v1_chr11_+_17109263_17109404	0.00014009686457769184	GUAACAG	ENSMUST00000102880.5|Ppp3r1|ENSMUSG00000033953.11|protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)
mm39_v1_chr11_+_104441489_104441525	0.00010447145308133583	GUAACAG	ENSMUST00000018800.9|Myl4|ENSMUSG00000061086.13|myosin, light polypeptide 4
mm39_v1_chr7_+_120991489_120991513	6.432583532662856e-05	GUAACAG	ENSMUST00000084628.5|Hs3st2|ENSMUSG00000046321.9|heparan sulfate (glucosamine) 3-O-sulfotransferase 2
mm39_v1_chr13_-_47083194_47083276	2.9831577520991326e-05	GUAACAG	ENSMUST00000056978.8|Kif13a|ENSMUSG00000021375.12|kinesin family member 13A
