mm39_v1_chr17_-_34218301_34218462	0.940632010468227	Gli1	ENSMUST00000235463.2|H2-K1|ENSMUSG00000061232.17|histocompatibility 2, K1, K region
mm39_v1_chr11_-_96714813_96714850	0.9006096374972516	Gli1	ENSMUST00000142065.2|Nfe2l1|ENSMUSG00000038615.18|nuclear factor, erythroid derived 2,-like 1	ENSMUST00000167110.8|Nfe2l1|ENSMUSG00000038615.18|nuclear factor, erythroid derived 2,-like 1
mm39_v1_chr6_-_124410452_124410474	0.7890126620076495	Gli1	ENSMUST00000124998.2|Clstn3|ENSMUSG00000008153.13|calsyntenin 3	ENSMUST00000238807.2|Clstn3|ENSMUSG00000008153.13|calsyntenin 3
mm39_v1_chr10_-_34003933_34003983	0.7601718494344428	Gli1	ENSMUST00000062784.8|Calhm6|ENSMUSG00000046031.8|calcium homeostasis modulator family member 6
mm39_v1_chr12_+_84363603_84363650	0.680153849903735	Gli1	ENSMUST00000045931.12|Zfp410|ENSMUSG00000042472.12|zinc finger protein 410
mm39_v1_chr7_+_24069680_24069773	0.6801342573267856	Gli1	ENSMUST00000205428.2|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	ENSMUST00000171904.3|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	ENSMUST00000205626.2|Kcnn4|ENSMUSG00000054342.9|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm39_v1_chrX_-_166165743_166165757	0.6542514941238428	Gli1	ENSMUST00000026839.5|Prps2|ENSMUSG00000025742.6|phosphoribosyl pyrophosphate synthetase 2
mm39_v1_chr4_-_154983533_154983592	0.6111566034954184	Gli1	ENSMUST00000030935.10|Prxl2b|ENSMUSG00000029059.10|peroxiredoxin like 2B	ENSMUST00000132281.2|Prxl2b|ENSMUSG00000029059.10|peroxiredoxin like 2B
mm39_v1_chr17_-_90217868_90217877	0.583021188317382	Gli1	ENSMUST00000086423.6|Gm10184|ENSMUSG00000066878.6|predicted pseudogene 10184
mm39_v1_chr5_-_115438971_115439003	0.5819913770652372	Gli1	ENSMUST00000112090.2|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr9_+_106083988_106084003	0.5568630225303591	Gli1	ENSMUST00000188650.2|Twf2|ENSMUSG00000023277.14|twinfilin actin binding protein 2
mm39_v1_chr15_-_103218876_103219039	0.5553291245366452	Gli1	ENSMUST00000079824.6|Gpr84|ENSMUSG00000063234.6|G protein-coupled receptor 84
mm39_v1_chr11_-_76289888_76290010	0.5315876388330064	Gli1	ENSMUST00000021204.4|Nxn|ENSMUSG00000020844.7|nucleoredoxin
mm39_v1_chr17_+_34406762_34406843	0.5279001202546603	Gli1	ENSMUST00000041633.15|Tap1|ENSMUSG00000037321.18|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chrX_-_141173330_141173341	0.5263681635923625	Gli1	ENSMUST00000112907.8|Acsl4|ENSMUSG00000031278.13|acyl-CoA synthetase long-chain family member 4
mm39_v1_chr6_-_52195663_52195696	0.521745899631987	Gli1	ENSMUST00000134367.4|Hoxa7|ENSMUSG00000038236.9|homeobox A7
mm39_v1_chr14_+_55798362_55798432	0.4911406905379564	Gli1	ENSMUST00000072530.11|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000128490.9|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr17_+_34406523_34406544	0.48946194810876564	Gli1	ENSMUST00000170086.8|Tap1|ENSMUSG00000037321.18|transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
mm39_v1_chr2_+_30061469_30061509	0.48541835861222205	Gli1	ENSMUST00000015481.6|Endog|ENSMUSG00000015337.6|endonuclease G
mm39_v1_chr18_-_35795233_35795255	0.48311376293020303	Gli1	ENSMUST00000025209.12|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000096573.4|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr4_+_106418224_106418235	0.47965288333136674	Gli1	ENSMUST00000047973.4|Dhcr24|ENSMUSG00000034926.4|24-dehydrocholesterol reductase
mm39_v1_chr19_-_46321218_46321231	0.4596197294358318	Gli1	ENSMUST00000238062.2|Cuedc2|ENSMUSG00000036748.17|CUE domain containing 2
mm39_v1_chr11_+_115310885_115310954	0.4433511615788403	Gli1	ENSMUST00000103035.10|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2
mm39_v1_chr7_-_110673269_110673456	0.4375603479344708	Gli1	ENSMUST00000163014.2|Eif4g2|ENSMUSG00000005610.18|eukaryotic translation initiation factor 4, gamma 2
mm39_v1_chr13_+_81931196_81931412	0.4274727773943927	Gli1	ENSMUST00000022009.10|Cetn3|ENSMUSG00000021537.10|centrin 3	ENSMUST00000223793.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chrX_+_158086253_158086277	0.42576831102515256	Gli1	ENSMUST00000112491.2|Rps6ka3|ENSMUSG00000031309.16|ribosomal protein S6 kinase polypeptide 3
mm39_v1_chr14_+_105496008_105496064	0.41750031861268677	Gli1	ENSMUST00000181969.8|Ndfip2|ENSMUSG00000053253.17|Nedd4 family interacting protein 2
mm39_v1_chr5_-_110927803_110927833	0.41685755818819775	Gli1	ENSMUST00000112426.8|Pus1|ENSMUSG00000029507.17|pseudouridine synthase 1
mm39_v1_chr17_-_85097945_85098014	0.41202575088265064	Gli1	ENSMUST00000112308.9|Lrpprc|ENSMUSG00000024120.13|leucine-rich PPR-motif containing
mm39_v1_chr14_+_55798517_55798528	0.4042829388350588	Gli1	ENSMUST00000117701.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr14_+_105496147_105496196	0.37702469049904735	Gli1	ENSMUST00000138283.2|Ndfip2|ENSMUSG00000053253.17|Nedd4 family interacting protein 2
mm39_v1_chr3_-_94566107_94566185	0.3763926892720245	Gli1	ENSMUST00000196655.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000200407.2|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000006123.11|Tuft1|ENSMUSG00000005968.15|tuftelin 1	ENSMUST00000196733.5|Tuft1|ENSMUSG00000005968.15|tuftelin 1
mm39_v1_chr7_-_139696308_139696389	0.37294231968070934	Gli1	ENSMUST00000026538.13|Echs1|ENSMUSG00000025465.14|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm39_v1_chr6_-_67014348_67014376	0.36882926160301105	Gli1	ENSMUST00000204369.2|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chr6_+_95094721_95094938	0.36637901023235436	Gli1	ENSMUST00000032107.10|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8	ENSMUST00000119582.3|Kbtbd8|ENSMUSG00000030031.15|kelch repeat and BTB (POZ) domain containing 8
mm39_v1_chr12_-_69243871_69243893	0.366275503677261	Gli1	ENSMUST00000223192.2|Gm49383|ENSMUSG00000113149.2|predicted gene, 49383
mm39_v1_chr10_+_79613083_79613116	0.36614838929828647	Gli1	ENSMUST00000020575.5|Fstl3|ENSMUSG00000020325.11|follistatin-like 3
mm39_v1_chr18_-_35795175_35795228	0.3523245790687269	Gli1	ENSMUST00000236574.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000236971.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr5_-_123038329_123038438	0.3521821637860999	Gli1	ENSMUST00000031435.14|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr8_-_106692668_106692755	0.3421319555692786	Gli1	ENSMUST00000116429.9|Slc12a4|ENSMUSG00000017765.18|solute carrier family 12, member 4	ENSMUST00000034370.17|Slc12a4|ENSMUSG00000017765.18|solute carrier family 12, member 4
mm39_v1_chrX_-_141173487_141173531	0.33283016291403655	Gli1	ENSMUST00000112904.8|Acsl4|ENSMUSG00000031278.13|acyl-CoA synthetase long-chain family member 4	ENSMUST00000112903.8|Acsl4|ENSMUSG00000031278.13|acyl-CoA synthetase long-chain family member 4	ENSMUST00000033634.5|Acsl4|ENSMUSG00000031278.13|acyl-CoA synthetase long-chain family member 4
mm39_v1_chr11_+_115310963_115311008	0.32101655239819976	Gli1	ENSMUST00000106533.8|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2	ENSMUST00000123345.2|Kctd2|ENSMUSG00000016940.19|potassium channel tetramerisation domain containing 2
mm39_v1_chr17_-_23783063_23783212	0.3147893820964853	Gli1	ENSMUST00000095606.5|Zfp213|ENSMUSG00000071256.5|zinc finger protein 213
mm39_v1_chr6_+_28423539_28423629	0.3124503314385517	Gli1	ENSMUST00000020717.12|Arf5|ENSMUSG00000020440.14|ADP-ribosylation factor 5	ENSMUST00000169841.2|Arf5|ENSMUSG00000020440.14|ADP-ribosylation factor 5
mm39_v1_chr5_-_110987441_110987600	0.30913662640625433	Gli1	ENSMUST00000145318.2|Hscb|ENSMUSG00000043510.13|HscB iron-sulfur cluster co-chaperone
mm39_v1_chr13_+_81931642_81931677	0.3033658943805162	Gli1	ENSMUST00000224574.2|Cetn3|ENSMUSG00000021537.10|centrin 3
mm39_v1_chr12_+_17778198_17778227	0.3019155097099125	Gli1	ENSMUST00000222944.2|Hpcal1|ENSMUSG00000071379.3|hippocalcin-like 1
mm39_v1_chr3_+_95836558_95836611	0.3003731977159668	Gli1	ENSMUST00000165307.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000015893.13|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000169426.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chrX_-_139857424_139857477	0.2988461288771405	Gli1	ENSMUST00000033805.15|Psmd10|ENSMUSG00000031429.15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	ENSMUST00000112978.2|Psmd10|ENSMUSG00000031429.15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
mm39_v1_chr4_-_117539431_117539477	0.2984980227235965	Gli1	ENSMUST00000102687.4|Dmap1|ENSMUSG00000009640.12|DNA methyltransferase 1-associated protein 1
mm39_v1_chr8_-_41494890_41494903	0.29784080862345585	Gli1	ENSMUST00000051379.14|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr7_-_79989900_79989958	0.29602916766977416	Gli1	ENSMUST00000133728.8|Unc45a|ENSMUSG00000030533.17|unc-45 myosin chaperone A
mm39_v1_chr5_-_110987604_110987653	0.29219957863606383	Gli1	ENSMUST00000056937.12|Hscb|ENSMUSG00000043510.13|HscB iron-sulfur cluster co-chaperone
mm39_v1_chr11_+_23256883_23256908	0.28529521013201137	Gli1	ENSMUST00000180046.8|Usp34|ENSMUSG00000056342.17|ubiquitin specific peptidase 34
mm39_v1_chr7_+_101034604_101034759	0.2788623673644391	Gli1	ENSMUST00000130016.8|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	ENSMUST00000134143.2|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm39_v1_chr9_+_32607301_32607417	0.2689619045007557	Gli1	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr13_-_63579497_63579547	0.2668985040544825	Gli1	ENSMUST00000160931.2|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000099444.10|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000220684.2|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000161977.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C	ENSMUST00000163091.8|Fancc|ENSMUSG00000021461.18|Fanconi anemia, complementation group C
mm39_v1_chr14_+_55797934_55797990	0.25966716522685546	Gli1	ENSMUST00000121622.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000143431.2|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11	ENSMUST00000150481.8|Dcaf11|ENSMUSG00000022214.16|DDB1 and CUL4 associated factor 11
mm39_v1_chr7_-_126074222_126074251	0.25941469332196776	Gli1	ENSMUST00000205497.2|Sh2b1|ENSMUSG00000030733.11|SH2B adaptor protein 1
mm39_v1_chr11_+_23256909_23256937	0.2576398510265503	Gli1	ENSMUST00000137823.8|Usp34|ENSMUSG00000056342.17|ubiquitin specific peptidase 34
mm39_v1_chr11_+_4085164_4085222	0.25021783395025	Gli1	ENSMUST00000003677.11|Rnf215|ENSMUSG00000003581.15|ring finger protein 215	ENSMUST00000145705.8|Rnf215|ENSMUSG00000003581.15|ring finger protein 215
mm39_v1_chr7_-_126073994_126074148	0.24139426193422783	Gli1	ENSMUST00000205733.2|Sh2b1|ENSMUSG00000030733.11|SH2B adaptor protein 1	ENSMUST00000205889.2|Sh2b1|ENSMUSG00000030733.11|SH2B adaptor protein 1
mm39_v1_chr11_+_78136569_78136646	0.23300243205090246	Gli1	ENSMUST00000002133.9|Sdf2|ENSMUSG00000002064.11|stromal cell derived factor 2
mm39_v1_chr19_-_21418215_21418238	0.2299539028169882	Gli1	ENSMUST00000237823.2|Gda|ENSMUSG00000058624.14|guanine deaminase
mm39_v1_chr8_-_96161414_96161458	0.22136307759319243	Gli1	ENSMUST00000211908.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr7_+_139695707_139695717	0.2203749343641026	Gli1	ENSMUST00000211757.2|Paox|ENSMUSG00000025464.16|polyamine oxidase (exo-N4-amino)
mm39_v1_chr2_-_152672535_152672600	0.21694233149503062	Gli1	ENSMUST00000146380.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134902.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000134357.2|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1	ENSMUST00000109820.5|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr6_-_148846247_148846324	0.2114168600067352	Gli1	ENSMUST00000111562.8|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor	ENSMUST00000081956.12|Sinhcaf|ENSMUSG00000039985.15|SIN3-HDAC complex associated factor
mm39_v1_chr6_-_67014191_67014235	0.20658044241195886	Gli1	ENSMUST00000204282.2|Gadd45a|ENSMUSG00000036390.9|growth arrest and DNA-damage-inducible 45 alpha
mm39_v1_chrX_+_154045439_154045454	0.20275759228140178	Gli1	ENSMUST00000026324.10|Acot9|ENSMUSG00000025287.16|acyl-CoA thioesterase 9
mm39_v1_chr9_-_106762818_106762818	0.20275196889743977	Gli1	ENSMUST00000185707.2|Rbm15b|ENSMUSG00000074102.5|RNA binding motif protein 15B
mm39_v1_chr2_+_26220403_26220453	0.2027036236255511	Gli1	ENSMUST00000114134.9|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)	ENSMUST00000127453.2|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chr9_-_96774719_96774740	0.19813808985544956	Gli1	ENSMUST00000154146.8|Pxylp1|ENSMUSG00000043587.16|2-phosphoxylose phosphatase 1
mm39_v1_chr12_+_84363876_84363920	0.19811359904120204	Gli1	ENSMUST00000222258.2|Zfp410|ENSMUSG00000042472.12|zinc finger protein 410	ENSMUST00000222832.2|Zfp410|ENSMUSG00000042472.12|zinc finger protein 410	ENSMUST00000220931.2|Zfp410|ENSMUSG00000042472.12|zinc finger protein 410
mm39_v1_chr13_+_54722833_54722906	0.19764876276150944	Gli1	ENSMUST00000156024.2|Arl10|ENSMUSG00000025870.11|ADP-ribosylation factor-like 10
mm39_v1_chr4_-_45320579_45320634	0.194303351771973	Gli1	ENSMUST00000030003.10|Exosc3|ENSMUSG00000028322.12|exosome component 3
mm39_v1_chr5_-_134485081_134485118	0.1926427996981641	Gli1	ENSMUST00000111244.5|Gtf2ird1|ENSMUSG00000023079.15|general transcription factor II I repeat domain-containing 1
mm39_v1_chr1_-_84817000_84817011	0.19261875201347528	Gli1	ENSMUST00000186648.7|Trip12|ENSMUSG00000026219.15|thyroid hormone receptor interactor 12
mm39_v1_chr2_+_29780122_29780168	0.1924486231377471	Gli1	ENSMUST00000113762.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113765.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr2_+_181139016_181139037	0.19121730828563366	Gli1	ENSMUST00000108799.10|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr2_+_119181703_119181716	0.1904613797073131	Gli1	ENSMUST00000028780.4|Chac1|ENSMUSG00000027313.4|ChaC, cation transport regulator 1
mm39_v1_chr9_+_103940879_103940935	0.19039926094142318	Gli1	ENSMUST00000047799.13|Acad11|ENSMUSG00000090150.11|acyl-Coenzyme A dehydrogenase family, member 11	ENSMUST00000189998.3|Acad11|ENSMUSG00000090150.11|acyl-Coenzyme A dehydrogenase family, member 11
mm39_v1_chr11_-_34724458_34724490	0.1896427991709411	Gli1	ENSMUST00000093191.3|Spdl1|ENSMUSG00000069910.3|spindle apparatus coiled-coil protein 1
mm39_v1_chr5_-_123127346_123127401	0.18916750807397428	Gli1	ENSMUST00000118027.8|Kdm2b|ENSMUSG00000029475.18|lysine (K)-specific demethylase 2B
mm39_v1_chr10_-_128727542_128727587	0.18680580678684638	Gli1	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr1_-_106641940_106642062	0.18675747149214322	Gli1	ENSMUST00000112751.2|Bcl2|ENSMUSG00000057329.8|B cell leukemia/lymphoma 2
mm39_v1_chr9_-_108183162_108183206	0.18480844538032745	Gli1	ENSMUST00000044725.9|Tcta|ENSMUSG00000039461.13|T cell leukemia translocation altered gene
mm39_v1_chrX_+_135950334_135950415	0.1842268065526735	Gli1	ENSMUST00000047852.8|Fam199x|ENSMUSG00000042595.8|family with sequence similarity 199, X-linked
mm39_v1_chr10_+_79722081_79722153	0.18118808121527943	Gli1	ENSMUST00000046091.7|Elane|ENSMUSG00000020125.8|elastase, neutrophil expressed
mm39_v1_chr2_+_181138958_181139009	0.17749548531732642	Gli1	ENSMUST00000149163.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000000844.15|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000184849.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000108800.8|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2	ENSMUST00000069712.9|Tpd52l2|ENSMUSG00000000827.19|tumor protein D52-like 2
mm39_v1_chr4_-_133601990_133602042	0.175505857704446	Gli1	ENSMUST00000168974.9|Rps6ka1|ENSMUSG00000003644.18|ribosomal protein S6 kinase polypeptide 1
mm39_v1_chr11_+_3239868_3239993	0.1727882037001736	Gli1	ENSMUST00000094471.10|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1	ENSMUST00000110043.8|Patz1|ENSMUSG00000020453.18|POZ (BTB) and AT hook containing zinc finger 1
mm39_v1_chr7_+_24310171_24310201	0.16893898068929822	Gli1	ENSMUST00000206422.2|Phldb3|ENSMUSG00000074277.5|pleckstrin homology like domain, family B, member 3
mm39_v1_chr9_-_54569128_54569154	0.16767637980986494	Gli1	ENSMUST00000034822.12|Acsbg1|ENSMUSG00000032281.12|acyl-CoA synthetase bubblegum family member 1
mm39_v1_chr3_+_95836637_95836698	0.16156504442082437	Gli1	ENSMUST00000171368.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	ENSMUST00000168106.8|Anp32e|ENSMUSG00000015749.13|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
mm39_v1_chr4_+_12140263_12140317	0.16002621270526127	Gli1	ENSMUST00000050069.9|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1	ENSMUST00000069128.8|Rbm12b1|ENSMUSG00000046667.15|RNA binding motif protein 12 B1
mm39_v1_chr2_-_92264374_92264398	0.15741823732215662	Gli1	ENSMUST00000111278.2|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)	ENSMUST00000090559.12|Cry2|ENSMUSG00000068742.12|cryptochrome 2 (photolyase-like)
mm39_v1_chr3_+_68401536_68401565	0.1573860080411279	Gli1	ENSMUST00000182719.8|Schip1|ENSMUSG00000027777.16|schwannomin interacting protein 1
mm39_v1_chr13_-_53531391_53531433	0.15650707516040024	Gli1	ENSMUST00000021920.8|Sptlc1|ENSMUSG00000021468.9|serine palmitoyltransferase, long chain base subunit 1
mm39_v1_chr8_+_77628916_77629104	0.15591202875355084	Gli1	ENSMUST00000109912.8|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2	ENSMUST00000128862.2|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2	ENSMUST00000109911.8|Nr3c2|ENSMUSG00000031618.14|nuclear receptor subfamily 3, group C, member 2
mm39_v1_chr2_+_84867554_84867649	0.15548718790469443	Gli1	ENSMUST00000077798.13|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr7_+_79836581_79836651	0.15076369165509781	Gli1	ENSMUST00000032754.9|Sema4b|ENSMUSG00000030539.14|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm39_v1_chrX_+_139857640_139857673	0.14934964946794044	Gli1	ENSMUST00000112971.2|Atg4a|ENSMUSG00000079418.6|autophagy related 4A, cysteine peptidase
mm39_v1_chr13_+_6598185_6598226	0.14854510753890346	Gli1	ENSMUST00000021611.10|Pitrm1|ENSMUSG00000021193.11|pitrilysin metallepetidase 1	ENSMUST00000222485.2|Pitrm1|ENSMUSG00000021193.11|pitrilysin metallepetidase 1
mm39_v1_chr12_+_44375747_44375845	0.14822194102561292	Gli1	ENSMUST00000020939.16|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule	ENSMUST00000220126.2|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule
mm39_v1_chrX_+_139857688_139857703	0.14632174817548602	Gli1	ENSMUST00000239541.1|Atg4a|ENSMUSG00000079418.6|autophagy related 4A, cysteine peptidase
mm39_v1_chr7_+_140796537_140796557	0.1424762986889281	Gli1	ENSMUST00000141804.2|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr10_+_80085275_80085306	0.13961184051288078	Gli1	ENSMUST00000020361.7|Ndufs7|ENSMUSG00000020153.15|NADH:ubiquinone oxidoreductase core subunit S7
mm39_v1_chr6_-_113508536_113508628	0.1302754692998652	Gli1	ENSMUST00000032425.7|Emc3|ENSMUSG00000030286.7|ER membrane protein complex subunit 3
mm39_v1_chr14_+_19801333_19801360	0.12997947000200274	Gli1	ENSMUST00000022340.5|Nid2|ENSMUSG00000021806.5|nidogen 2
mm39_v1_chr12_+_77285770_77285849	0.1271033007857444	Gli1	ENSMUST00000062804.8|Fut8|ENSMUSG00000021065.17|fucosyltransferase 8
mm39_v1_chr14_-_40730180_40730232	0.1256976849147178	Gli1	ENSMUST00000136661.8|Prxl2a|ENSMUSG00000021792.16|peroxiredoxin like 2A
mm39_v1_chr2_+_129642371_129642493	0.12478793318565495	Gli1	ENSMUST00000165413.9|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35	ENSMUST00000166282.3|Stk35|ENSMUSG00000037885.19|serine/threonine kinase 35
mm39_v1_chr15_-_51855073_51855159	0.12459324284468828	Gli1	ENSMUST00000022927.11|Rad21|ENSMUSG00000022314.11|RAD21 cohesin complex component
mm39_v1_chr2_+_76200299_76200386	0.12356725439468569	Gli1	ENSMUST00000046389.5|Rbm45|ENSMUSG00000042369.9|RNA binding motif protein 45
mm39_v1_chr7_+_25016492_25016589	0.12323343564435693	Gli1	ENSMUST00000128119.2|Megf8|ENSMUSG00000045039.10|multiple EGF-like-domains 8
mm39_v1_chr2_-_152673032_152673246	0.122196175341704	Gli1	ENSMUST00000128172.3|Bcl2l1|ENSMUSG00000007659.19|BCL2-like 1
mm39_v1_chr6_+_113508636_113508682	0.12164253676369219	Gli1	ENSMUST00000036340.12|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2	ENSMUST00000204827.3|Fancd2|ENSMUSG00000034023.17|Fanconi anemia, complementation group D2
mm39_v1_chr8_-_41469332_41469360	0.12122642460276173	Gli1	ENSMUST00000131965.2|Mtus1|ENSMUSG00000045636.17|mitochondrial tumor suppressor 1
mm39_v1_chr2_-_121287174_121287262	0.11739848984429169	Gli1	ENSMUST00000110613.9|Serinc4|ENSMUSG00000046110.16|serine incorporator 4	ENSMUST00000056312.10|Serinc4|ENSMUSG00000046110.16|serine incorporator 4
mm39_v1_chr2_+_20742115_20742152	0.11350886221841858	Gli1	ENSMUST00000114606.8|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4	ENSMUST00000114608.3|Etl4|ENSMUSG00000036617.18|enhancer trap locus 4
mm39_v1_chr2_-_91762033_91762069	0.11335354513585344	Gli1	ENSMUST00000111309.8|Mdk|ENSMUSG00000027239.15|midkine	ENSMUST00000090602.6|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr9_+_113570506_113570551	0.1105525944645523	Gli1	ENSMUST00000213663.2|Clasp2|ENSMUSG00000033392.17|CLIP associating protein 2
mm39_v1_chr2_+_29779750_29779929	0.11003537521003834	Gli1	ENSMUST00000113763.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113757.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113756.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000133233.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113759.9|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000113755.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000137558.8|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2	ENSMUST00000046571.14|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr2_+_29780073_29780096	0.10977766506623353	Gli1	ENSMUST00000028128.13|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr15_+_99290763_99290785	0.10928933246195917	Gli1	ENSMUST00000023749.15|Tmbim6|ENSMUSG00000023010.16|transmembrane BAX inhibitor motif containing 6
mm39_v1_chr7_-_6334239_6334290	0.10858184045008994	Gli1	ENSMUST00000127658.2|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583	ENSMUST00000062765.14|Zfp583|ENSMUSG00000030443.17|zinc finger protein 583
mm39_v1_chr16_+_10229786_10229827	0.10804874067936764	Gli1	ENSMUST00000023146.5|Nubp1|ENSMUSG00000022503.11|nucleotide binding protein 1
mm39_v1_chr12_+_44375665_44375740	0.10669182635930674	Gli1	ENSMUST00000110748.4|Nrcam|ENSMUSG00000020598.17|neuronal cell adhesion molecule
mm39_v1_chr7_+_27198740_27198756	0.10359010599584983	Gli1	ENSMUST00000098644.9|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000108355.2|Prx|ENSMUSG00000053198.15|periaxin	ENSMUST00000238936.2|Prx|ENSMUSG00000053198.15|periaxin
mm39_v1_chr2_-_91762119_91762141	0.09823846201615742	Gli1	ENSMUST00000069423.13|Mdk|ENSMUSG00000027239.15|midkine
mm39_v1_chr7_+_28682253_28682318	0.09626573242556197	Gli1	ENSMUST00000085835.8|Map4k1|ENSMUSG00000037337.12|mitogen-activated protein kinase kinase kinase kinase 1
mm39_v1_chr6_-_52222776_52222806	0.09570753572710095	Gli1	ENSMUST00000048026.10|Hoxa11|ENSMUSG00000038210.11|homeobox A11
mm39_v1_chr5_-_115439016_115439058	0.09363776353219835	Gli1	ENSMUST00000009157.4|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr4_-_43454561_43454590	0.0919843058557662	Gli1	ENSMUST00000107926.8|Cd72|ENSMUSG00000028459.12|CD72 antigen	ENSMUST00000107925.8|Cd72|ENSMUSG00000028459.12|CD72 antigen
mm39_v1_chr17_-_34247016_34247050	0.091952337463236	Gli1	ENSMUST00000236627.2|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000237759.2|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000045467.14|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6	ENSMUST00000114303.4|H2-Ke6|ENSMUSG00000073422.12|H2-K region expressed gene 6
mm39_v1_chr12_-_113945961_113945961	0.08482656861972893	Gli1	ENSMUST00000103466.2|Ighv11-1|ENSMUSG00000094533.2|immunoglobulin heavy variable 11-1
mm39_v1_chr9_+_110134241_110134299	0.08394597894268474	Gli1	ENSMUST00000199592.5|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6	ENSMUST00000068071.12|Elp6|ENSMUSG00000054836.13|elongator acetyltransferase complex subunit 6
mm39_v1_chr2_+_29780532_29780557	0.07893593688036991	Gli1	ENSMUST00000113764.4|Odf2|ENSMUSG00000026790.20|outer dense fiber of sperm tails 2
mm39_v1_chr10_+_69369590_69369603	0.07667976782970815	Gli1	ENSMUST00000182884.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr5_-_32903615_32903657	0.07356730006233397	Gli1	ENSMUST00000120591.8|Pisd|ENSMUSG00000023452.20|phosphatidylserine decarboxylase
mm39_v1_chr2_+_130748380_130748421	0.07330728064522626	Gli1	ENSMUST00000028781.9|Atrn|ENSMUSG00000027312.15|attractin
mm39_v1_chr11_+_4085233_4085282	0.06917568033786016	Gli1	ENSMUST00000124670.2|Rnf215|ENSMUSG00000003581.15|ring finger protein 215
mm39_v1_chr9_-_108183356_108183360	0.06912228193215347	Gli1	ENSMUST00000192886.6|Tcta|ENSMUSG00000039461.13|T cell leukemia translocation altered gene
mm39_v1_chr2_+_84867783_84867874	0.06551186760968271	Gli1	ENSMUST00000168266.8|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1	ENSMUST00000130729.3|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr17_+_37356872_37356972	0.06155863359336421	Gli1	ENSMUST00000174456.8|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr12_-_70158348_70158403	0.06049868461178972	Gli1	ENSMUST00000220689.2|Nin|ENSMUSG00000021068.18|ninein
mm39_v1_chr3_+_115801106_115801202	0.05792685020777525	Gli1	ENSMUST00000029575.12|Extl2|ENSMUSG00000027963.15|exostosin-like glycosyltransferase 2	ENSMUST00000106501.8|Extl2|ENSMUSG00000027963.15|exostosin-like glycosyltransferase 2
mm39_v1_chr12_-_114419703_114419777	0.055747254685206735	Gli1	ENSMUST00000193397.2|Ighv6-7|ENSMUSG00000087582.7|immunoglobulin heavy variable V6-7
mm39_v1_chr4_+_118285275_118285392	0.053341562725988244	Gli1	ENSMUST00000006557.13|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000167636.8|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	ENSMUST00000102673.11|Elovl1|ENSMUSG00000006390.16|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
mm39_v1_chr13_-_114595475_114595493	0.05073165942240937	Gli1	ENSMUST00000022287.8|Fst|ENSMUSG00000021765.10|follistatin	ENSMUST00000223640.3|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chr7_-_19043525_19043627	0.048946223284126796	Gli1	ENSMUST00000208446.2|Fosb|ENSMUSG00000003545.4|FBJ osteosarcoma oncogene B
mm39_v1_chr7_+_140796559_140796613	0.048117977551331834	Gli1	ENSMUST00000148975.3|Rassf7|ENSMUSG00000038618.13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm39_v1_chr10_-_63257568_63257568	0.04743099201467647	Gli1	ENSMUST00000054760.6|Gm7075|ENSMUSG00000048185.6|predicted gene 7075
mm39_v1_chr9_+_117888124_117888169	0.045652201472935916	Gli1	ENSMUST00000123690.2|Azi2|ENSMUSG00000039285.13|5-azacytidine induced gene 2
mm39_v1_chr10_+_69369632_69369677	0.04345199417393399	Gli1	ENSMUST00000182155.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000183169.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000183148.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr10_-_43934774_43934879	0.04165849771186454	Gli1	ENSMUST00000239010.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr17_+_34457868_34457938	0.04122885759333896	Gli1	ENSMUST00000095342.11|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000167280.8|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus	ENSMUST00000236838.2|H2-Ob|ENSMUSG00000041538.17|histocompatibility 2, O region beta locus
mm39_v1_chr8_-_96161466_96161497	0.04113998234631667	Gli1	ENSMUST00000213086.2|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20	ENSMUST00000034249.8|Cfap20|ENSMUSG00000031796.8|cilia and flagella associated protein 20
mm39_v1_chr5_-_146900548_146900617	0.04074518691285221	Gli1	ENSMUST00000125217.2|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000110564.8|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000066675.10|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000016654.9|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000110566.2|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3	ENSMUST00000140526.2|Mtif3|ENSMUSG00000016510.12|mitochondrial translational initiation factor 3
mm39_v1_chr11_-_45845992_45846020	0.037145971688552507	Gli1	ENSMUST00000109254.2|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr1_+_125488747_125488832	0.03591738382874961	Gli1	ENSMUST00000027580.11|Slc35f5|ENSMUSG00000026342.11|solute carrier family 35, member F5
mm39_v1_chr2_+_118865262_118865350	0.03568919059367316	Gli1	ENSMUST00000028796.2|Rpusd2|ENSMUSG00000027324.2|RNA pseudouridylate synthase domain containing 2
mm39_v1_chr4_-_40948196_40948296	0.0344616750673694	Gli1	ENSMUST00000030125.5|Bag1|ENSMUSG00000028416.14|BCL2-associated athanogene 1	ENSMUST00000108089.8|Bag1|ENSMUSG00000028416.14|BCL2-associated athanogene 1	ENSMUST00000191273.7|Bag1|ENSMUSG00000028416.14|BCL2-associated athanogene 1
mm39_v1_chr4_+_62398262_62398337	0.03151091808594349	Gli1	ENSMUST00000030088.12|Bspry|ENSMUSG00000028392.16|B-box and SPRY domain containing	ENSMUST00000107449.4|Bspry|ENSMUSG00000028392.16|B-box and SPRY domain containing
mm39_v1_chr4_+_116953218_116953280	0.0294521690615311	Gli1	ENSMUST00000030443.12|Ptch2|ENSMUSG00000028681.12|patched 2
mm39_v1_chr16_-_19703014_19703035	0.02878492575180552	Gli1	ENSMUST00000100083.5|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene	ENSMUST00000231564.2|A930003A15Rik|ENSMUSG00000075330.5|RIKEN cDNA A930003A15 gene
mm39_v1_chrX_-_58612709_58612832	0.02641475107327707	Gli1	ENSMUST00000124402.2|Fgf13|ENSMUSG00000031137.18|fibroblast growth factor 13
mm39_v1_chr11_-_115310743_115310796	0.02623063579777016	Gli1	ENSMUST00000106537.8|Atp5h|ENSMUSG00000034566.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	ENSMUST00000043931.9|Atp5h|ENSMUSG00000034566.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	ENSMUST00000073791.10|Atp5h|ENSMUSG00000034566.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D
mm39_v1_chr2_-_87734018_87734018	0.022326919813909593	Gli1	ENSMUST00000099844.2|Olfr1154|ENSMUSG00000075146.3|olfactory receptor 1154
mm39_v1_chr8_+_46111703_46111764	0.021550873467528063	Gli1	ENSMUST00000134675.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000139869.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2	ENSMUST00000126067.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr7_-_66915756_66915910	0.02109637172792925	Gli1	ENSMUST00000207715.2|Mef2a|ENSMUSG00000030557.18|myocyte enhancer factor 2A
mm39_v1_chr11_+_118324652_118324689	0.020944007082057518	Gli1	ENSMUST00000106286.3|C1qtnf1|ENSMUSG00000017446.15|C1q and tumor necrosis factor related protein 1
mm39_v1_chr8_+_55407872_55407889	0.020755358276748532	Gli1	ENSMUST00000033915.9|Gpm6a|ENSMUSG00000031517.9|glycoprotein m6a
mm39_v1_chr10_+_69370038_69370052	0.01990602226052917	Gli1	ENSMUST00000182439.8|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092434.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000047061.13|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092432.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000092431.12|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial	ENSMUST00000054167.15|Ank3|ENSMUSG00000069601.15|ankyrin 3, epithelial
mm39_v1_chr6_+_107506678_107506741	0.019797813958123817	Gli1	ENSMUST00000049285.10|Lrrn1|ENSMUSG00000034648.10|leucine rich repeat protein 1, neuronal
mm39_v1_chr11_+_9141934_9141948	0.01936663560580647	Gli1	ENSMUST00000042740.13|Abca13|ENSMUSG00000004668.15|ATP-binding cassette, sub-family A (ABC1), member 13
mm39_v1_chr19_-_42740898_42740959	0.018122130652571542	Gli1	ENSMUST00000237747.2|Pyroxd2|ENSMUSG00000060224.5|pyridine nucleotide-disulphide oxidoreductase domain 2
mm39_v1_chr2_+_106523532_106523624	0.017773824214581836	Gli1	ENSMUST00000111063.8|Mpped2|ENSMUSG00000016386.16|metallophosphoesterase domain containing 2
mm39_v1_chr13_-_114595122_114595272	0.017531051188889233	Gli1	ENSMUST00000231252.2|Fst|ENSMUSG00000021765.10|follistatin
mm39_v1_chrX_-_111315519_111315519	0.01715366817960074	Gli1	ENSMUST00000124335.8|Satl1|ENSMUSG00000025527.10|spermidine/spermine N1-acetyl transferase-like 1
mm39_v1_chr19_+_13745671_13745671	0.016809361187478878	Gli1	ENSMUST00000061669.3|Olfr1495|ENSMUSG00000047207.4|olfactory receptor 1495
mm39_v1_chr9_-_54568950_54569001	0.016373856384019628	Gli1	ENSMUST00000128624.2|Acsbg1|ENSMUSG00000032281.12|acyl-CoA synthetase bubblegum family member 1
mm39_v1_chr19_+_4771089_4771193	0.015439190575701681	Gli1	ENSMUST00000238976.3|Sptbn2|ENSMUSG00000067889.8|spectrin beta, non-erythrocytic 2
mm39_v1_chr11_-_42072990_42073049	0.014799475222813847	Gli1	ENSMUST00000205546.2|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm39_v1_chr16_+_92295009_92295063	0.014786885620914013	Gli1	ENSMUST00000023670.4|Clic6|ENSMUSG00000022949.10|chloride intracellular channel 6
mm39_v1_chr14_-_52648384_52648384	0.013915357249841775	Gli1	ENSMUST00000079459.4|Olfr1510|ENSMUSG00000063106.7|olfactory receptor 1510
mm39_v1_chr6_-_41613322_41613343	0.013885238898072248	Gli1	ENSMUST00000031902.7|Trpv6|ENSMUSG00000029868.15|transient receptor potential cation channel, subfamily V, member 6
mm39_v1_chr14_-_54647647_54647675	0.013628937868434646	Gli1	ENSMUST00000228488.2|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	ENSMUST00000195970.5|Slc7a7|ENSMUSG00000000958.11|solute carrier family 7 (cationic amino acid transporter, y+ system), member 7
mm39_v1_chr2_-_35994819_35994903	0.013384702263882789	Gli1	ENSMUST00000148852.4|Lhx6|ENSMUSG00000026890.20|LIM homeobox protein 6
mm39_v1_chr12_-_113876103_113876103	0.013147930876247294	Gli1	ENSMUST00000193133.3|Ighv7-2|ENSMUSG00000076653.5|immunoglobulin heavy variable 7-2	ENSMUST00000103462.4|Ighv7-2|ENSMUSG00000076653.5|immunoglobulin heavy variable 7-2
mm39_v1_chr11_-_94595325_94595325	0.013062714855231082	Gli1	ENSMUST00000069852.2|Gm11541|ENSMUSG00000056008.2|predicted gene 11541
mm39_v1_chr4_-_58553311_58553357	0.01303192210334118	Gli1	ENSMUST00000107571.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000055018.11|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr8_+_46111778_46111841	0.01281798983949495	Gli1	ENSMUST00000143820.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr17_+_37356854_37356869	0.012776867435204106	Gli1	ENSMUST00000025338.16|Gabbr1|ENSMUSG00000024462.18|gamma-aminobutyric acid (GABA) B receptor, 1
mm39_v1_chr12_-_113823290_113823320	0.012498516851310785	Gli1	ENSMUST00000103459.5|Ighv5-17|ENSMUSG00000095571.3|immunoglobulin heavy variable 5-17
mm39_v1_chr7_-_99340830_99340976	0.01239384545316639	Gli1	ENSMUST00000208713.2|Slco2b1|ENSMUSG00000030737.18|solute carrier organic anion transporter family, member 2b1
mm39_v1_chr1_-_25267894_25267916	0.012374934529565602	Gli1	ENSMUST00000126626.8|Adgrb3|ENSMUSG00000033569.18|adhesion G protein-coupled receptor B3
mm39_v1_chr1_+_129201081_129201206	0.012229869621530028	Gli1	ENSMUST00000073527.13|Thsd7b|ENSMUSG00000042581.15|thrombospondin, type I, domain containing 7B	ENSMUST00000040311.14|Thsd7b|ENSMUSG00000042581.15|thrombospondin, type I, domain containing 7B
mm39_v1_chr11_-_41891359_41891421	0.0121975660392599	Gli1	ENSMUST00000070735.10|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr11_-_99313078_99313086	0.012176569436886255	Gli1	ENSMUST00000017741.4|Krt12|ENSMUSG00000020912.5|keratin 12
mm39_v1_chr12_-_114117264_114117344	0.012142558904367133	Gli1	ENSMUST00000103461.5|Ighv7-3|ENSMUSG00000076652.5|immunoglobulin heavy variable 7-3
mm39_v1_chr13_-_63721412_63721412	0.011940155238034227	Gli1	ENSMUST00000195106.2|Ptch1|ENSMUSG00000021466.13|patched 1
mm39_v1_chr8_+_46111310_46111335	0.011231844272862664	Gli1	ENSMUST00000153798.8|Sorbs2|ENSMUSG00000031626.19|sorbin and SH3 domain containing 2
mm39_v1_chr9_-_50663571_50663638	0.011119740818858692	Gli1	ENSMUST00000042790.5|Hspb2|ENSMUSG00000038086.5|heat shock protein 2
mm39_v1_chr4_-_58553553_58553898	0.01093606865476947	Gli1	ENSMUST00000107575.9|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000107574.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1	ENSMUST00000147354.8|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr4_+_11156411_11156453	0.010806830165929926	Gli1	ENSMUST00000029865.4|Trp53inp1|ENSMUSG00000028211.12|transformation related protein 53 inducible nuclear protein 1
mm39_v1_chr19_+_8641369_8641484	0.010489385938102615	Gli1	ENSMUST00000035444.10|Chrm1|ENSMUSG00000032773.10|cholinergic receptor, muscarinic 1, CNS	ENSMUST00000163785.2|Chrm1|ENSMUSG00000032773.10|cholinergic receptor, muscarinic 1, CNS
mm39_v1_chr11_+_58556387_58556387	0.010218984438993044	Gli1	ENSMUST00000072030.4|Olfr322|ENSMUSG00000063549.5|olfactory receptor 322
mm39_v1_chr11_-_41891111_41891183	0.00988367909269913	Gli1	ENSMUST00000109290.2|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr2_-_147887810_147887868	0.009659365426438958	Gli1	ENSMUST00000109964.8|Foxa2|ENSMUSG00000037025.12|forkhead box A2
mm39_v1_chr11_-_42072920_42072931	0.009545306088922841	Gli1	ENSMUST00000207274.2|Gabra1|ENSMUSG00000010803.14|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm39_v1_chr11_-_58624049_58624049	0.0094611303185411	Gli1	ENSMUST00000075607.5|Olfr317|ENSMUSG00000060030.6|olfactory receptor 317
mm39_v1_chr9_+_50663171_50663202	0.009424631031197818	Gli1	ENSMUST00000214609.2|Cryab|ENSMUSG00000032060.11|crystallin, alpha B
mm39_v1_chr6_-_3763618_3763630	0.009410035513086737	Gli1	ENSMUST00000171613.8|Calcr|ENSMUSG00000023964.16|calcitonin receptor
mm39_v1_chr14_+_52804637_52804750	0.0091923211803449	Gli1	ENSMUST00000196939.2|Trav2|ENSMUSG00000076759.4|T cell receptor alpha variable 2	ENSMUST00000103568.3|Trav2|ENSMUSG00000076759.4|T cell receptor alpha variable 2
mm39_v1_chr19_-_45731290_45731303	0.009045164180648933	Gli1	ENSMUST00000111927.8|Fgf8|ENSMUSG00000025219.14|fibroblast growth factor 8
mm39_v1_chr15_-_95426419_95426523	0.008885194616741825	Gli1	ENSMUST00000229933.2|Nell2|ENSMUSG00000022454.18|NEL-like 2	ENSMUST00000166170.9|Nell2|ENSMUSG00000022454.18|NEL-like 2
mm39_v1_chr12_-_103304573_103304668	0.008698879549706535	Gli1	ENSMUST00000149431.2|Asb2|ENSMUSG00000021200.15|ankyrin repeat and SOCS box-containing 2
mm39_v1_chr7_-_118042772_118042792	0.008520362345233417	Gli1	ENSMUST00000081574.8|Syt17|ENSMUSG00000058420.9|synaptotagmin XVII
mm39_v1_chr7_-_102143980_102143980	0.008422297318395873	Gli1	ENSMUST00000058750.4|Olfr545|ENSMUSG00000044824.10|olfactory receptor 545
mm39_v1_chr7_+_73040908_73041044	0.00834742228753673	Gli1	ENSMUST00000128471.2|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A	ENSMUST00000139780.3|Rgma|ENSMUSG00000070509.16|repulsive guidance molecule family member A
mm39_v1_chr7_-_137999434_137999516	0.007450816616309341	Gli1	ENSMUST00000160436.2|Tcerg1l|ENSMUSG00000091002.3|transcription elongation regulator 1-like
mm39_v1_chr9_-_108183140_108183158	0.007308608153394117	Gli1	ENSMUST00000195615.2|Tcta|ENSMUSG00000039461.13|T cell leukemia translocation altered gene
mm39_v1_chrX_-_146337046_146337082	0.006566711720337853	Gli1	ENSMUST00000112819.9|Lrch2|ENSMUSG00000031290.15|leucine-rich repeats and calponin homology (CH) domain containing 2	ENSMUST00000136789.8|Lrch2|ENSMUSG00000031290.15|leucine-rich repeats and calponin homology (CH) domain containing 2
mm39_v1_chr9_-_107482494_107482601	0.006242932896962068	Gli1	ENSMUST00000102529.10|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr15_-_89263790_89263821	0.006144696795077038	Gli1	ENSMUST00000238996.2|Odf3b|ENSMUSG00000047394.10|outer dense fiber of sperm tails 3B
mm39_v1_chr7_-_46392403_46392406	0.005846280447691252	Gli1	ENSMUST00000128088.4|Saa1|ENSMUSG00000074115.6|serum amyloid A 1
mm39_v1_chr15_+_101013704_101013712	0.005758757811181484	Gli1	ENSMUST00000229954.2|Ankrd33|ENSMUSG00000047034.11|ankyrin repeat domain 33
mm39_v1_chr19_-_13793022_13793022	0.005335946536281617	Gli1	ENSMUST00000055672.4|Olfr1499|ENSMUSG00000045395.5|olfactory receptor 1499
mm39_v1_chrX_+_102365004_102365004	0.004581985513611752	Gli1	ENSMUST00000033689.3|Cdx4|ENSMUSG00000031326.3|caudal type homeobox 4
mm39_v1_chr7_+_107564010_107564010	0.004347977915016389	Gli1	ENSMUST00000217173.2|Olfr476|ENSMUSG00000095301.3|olfactory receptor 476
mm39_v1_chr11_-_87780720_87780720	0.004215554068813566	Gli1	ENSMUST00000049743.2|Olfr462|ENSMUSG00000093839.3|olfactory receptor 462
mm39_v1_chr7_+_86312872_86312872	0.004098794882578082	Gli1	ENSMUST00000081474.2|Olfr293|ENSMUSG00000063394.4|olfactory receptor 293
mm39_v1_chr11_-_45846291_45846321	0.003755065340310903	Gli1	ENSMUST00000011398.13|Thg1l|ENSMUSG00000011254.17|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm39_v1_chr4_-_58553171_58553184	0.0037314497023639382	Gli1	ENSMUST00000145361.2|Lpar1|ENSMUSG00000038668.15|lysophosphatidic acid receptor 1
mm39_v1_chr4_+_114678919_114678919	0.003644136421211049	Gli1	ENSMUST00000137570.2|Gm12830|ENSMUSG00000055198.4|predicted gene 12830
mm39_v1_chr18_-_32082624_32082689	0.0035735287499584173	Gli1	ENSMUST00000064016.6|Gpr17|ENSMUSG00000052229.6|G protein-coupled receptor 17
mm39_v1_chr4_+_154921916_154921916	0.003548552862626165	Gli1	ENSMUST00000207854.2|Ttc34|ENSMUSG00000046637.4|tetratricopeptide repeat domain 34
mm39_v1_chr2_-_151815759_151815886	0.003457616287684978	Gli1	ENSMUST00000109865.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A	ENSMUST00000109864.8|Fam110a|ENSMUSG00000027459.17|family with sequence similarity 110, member A
mm39_v1_chr9_-_107482462_107482482	0.0034301722880780787	Gli1	ENSMUST00000194433.6|Sema3b|ENSMUSG00000057969.16|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
mm39_v1_chr15_-_101848689_101848759	0.0031081247838025644	Gli1	ENSMUST00000023799.8|Krt79|ENSMUSG00000061397.9|keratin 79
mm39_v1_chr5_+_5623799_5623799	0.0029516047556079196	Gli1	ENSMUST00000101627.5|Gm8773|ENSMUSG00000073234.5|predicted gene 8773
mm39_v1_chr8_+_85763534_85763566	0.0028943066915232208	Gli1	ENSMUST00000093360.12|Tnpo2|ENSMUSG00000031691.15|transportin 2 (importin 3, karyopherin beta 2b)
mm39_v1_chr7_-_30062197_30062197	0.0024460448715222256	Gli1	ENSMUST00000046351.7|Lrfn3|ENSMUSG00000036957.9|leucine rich repeat and fibronectin type III domain containing 3
mm39_v1_chr1_-_75208734_75208734	0.0015212815647614982	Gli1	ENSMUST00000180101.3|A630095N17Rik|ENSMUSG00000096094.3|RIKEN cDNA A630095N17 gene
mm39_v1_chr10_+_40759815_40759859	0.000880365546575866	Gli1	ENSMUST00000105509.2|Wasf1|ENSMUSG00000019831.15|WASP family, member 1
