mm39_v1_chr4_-_154983533_154983592	0.056087680998821395	Gli2	ENSMUST00000030935.10|Prxl2b|ENSMUSG00000029059.10|peroxiredoxin like 2B	ENSMUST00000132281.2|Prxl2b|ENSMUSG00000029059.10|peroxiredoxin like 2B
mm39_v1_chr18_+_35347983_35348189	0.04505875290344488	Gli2	ENSMUST00000235449.2|Ctnna1|ENSMUSG00000037815.8|catenin (cadherin associated protein), alpha 1	ENSMUST00000235269.2|Ctnna1|ENSMUSG00000037815.8|catenin (cadherin associated protein), alpha 1
mm39_v1_chr6_-_124441731_124441753	0.04364778961836717	Gli2	ENSMUST00000008297.5|Clstn3|ENSMUSG00000008153.13|calsyntenin 3
mm39_v1_chr18_-_35795233_35795255	0.03937099606855348	Gli2	ENSMUST00000025209.12|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000096573.4|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr9_-_108455899_108455938	0.03762185348397854	Gli2	ENSMUST00000068700.7|Wdr6|ENSMUSG00000066357.7|WD repeat domain 6
mm39_v1_chr11_+_117198958_117199010	0.035962427189184965	Gli2	ENSMUST00000153668.8|Septin9|ENSMUSG00000059248.14|septin 9
mm39_v1_chr4_-_135699205_135699240	0.033662128527258944	Gli2	ENSMUST00000105852.8|Lypla2|ENSMUSG00000028670.15|lysophospholipase 2
mm39_v1_chr19_+_6952580_6952683	0.03190826834841936	Gli2	ENSMUST00000237084.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B	ENSMUST00000236218.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B	ENSMUST00000237235.2|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr1_-_93406091_93406113	0.03176879518963604	Gli2	ENSMUST00000188165.2|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chr4_-_120955387_120955447	0.030438669650558792	Gli2	ENSMUST00000058754.9|Zmpste24|ENSMUSG00000043207.11|zinc metallopeptidase, STE24
mm39_v1_chrX_-_166165743_166165757	0.03028771471317743	Gli2	ENSMUST00000026839.5|Prps2|ENSMUSG00000025742.6|phosphoribosyl pyrophosphate synthetase 2
mm39_v1_chr7_+_101034604_101034759	0.03012855335279871	Gli2	ENSMUST00000130016.8|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	ENSMUST00000134143.2|Arap1|ENSMUSG00000032812.19|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm39_v1_chr10_-_34003933_34003983	0.029887987520605397	Gli2	ENSMUST00000062784.8|Calhm6|ENSMUSG00000046031.8|calcium homeostasis modulator family member 6
mm39_v1_chr6_+_137731599_137731613	0.029508331194314133	Gli2	ENSMUST00000204356.2|Dera|ENSMUSG00000030225.12|deoxyribose-phosphate aldolase (putative)
mm39_v1_chr5_-_115438971_115439003	0.02889616873893829	Gli2	ENSMUST00000112090.2|Dynll1|ENSMUSG00000009013.6|dynein light chain LC8-type 1
mm39_v1_chr14_+_51162635_51162742	0.027847640107871333	Gli2	ENSMUST00000128395.2|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1
mm39_v1_chr8_-_13939964_13940005	0.026836814487075193	Gli2	ENSMUST00000209371.2|Coprs|ENSMUSG00000031458.9|coordinator of PRMT5, differentiation stimulator
mm39_v1_chr8_+_108162985_108163053	0.02611606711392976	Gli2	ENSMUST00000166615.3|Wwp2|ENSMUSG00000031930.12|WW domain containing E3 ubiquitin protein ligase 2	ENSMUST00000213097.2|Wwp2|ENSMUSG00000031930.12|WW domain containing E3 ubiquitin protein ligase 2	ENSMUST00000212205.2|Wwp2|ENSMUSG00000031930.12|WW domain containing E3 ubiquitin protein ligase 2
mm39_v1_chr11_+_29476423_29476474	0.025908741340967625	Gli2	ENSMUST00000136351.8|Mtif2|ENSMUSG00000020459.15|mitochondrial translational initiation factor 2	ENSMUST00000020749.13|Mtif2|ENSMUSG00000020459.15|mitochondrial translational initiation factor 2	ENSMUST00000144321.8|Mtif2|ENSMUSG00000020459.15|mitochondrial translational initiation factor 2	ENSMUST00000093239.11|Mtif2|ENSMUSG00000020459.15|mitochondrial translational initiation factor 2
mm39_v1_chr4_-_126215462_126215497	0.02465590847964884	Gli2	ENSMUST00000102617.5|Adprs|ENSMUSG00000042558.17|ADP-ribosylserine hydrolase
mm39_v1_chr19_+_6952319_6952371	0.023946425823176094	Gli2	ENSMUST00000070850.8|Ppp1r14b|ENSMUSG00000056612.8|protein phosphatase 1, regulatory inhibitor subunit 14B
mm39_v1_chr4_+_41760454_41760521	0.02365494244807066	Gli2	ENSMUST00000108040.8|Il11ra1|ENSMUSG00000073889.11|interleukin 11 receptor, alpha chain 1
mm39_v1_chr2_-_157408239_157408281	0.0236393734024868	Gli2	ENSMUST00000109528.9|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein	ENSMUST00000088494.3|Blcap|ENSMUSG00000067787.11|bladder cancer associated protein
mm39_v1_chr19_-_8858247_8858292	0.02267144453501071	Gli2	ENSMUST00000096253.7|Uqcc3|ENSMUSG00000071654.7|ubiquinol-cytochrome c reductase complex assembly factor 3
mm39_v1_chr17_+_28910302_28910316	0.022195825116140343	Gli2	ENSMUST00000004990.14|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000114754.8|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000062694.16|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14
mm39_v1_chr2_+_160573604_160573691	0.021984621694265	Gli2	ENSMUST00000174885.2|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1	ENSMUST00000109462.8|Plcg1|ENSMUSG00000016933.18|phospholipase C, gamma 1
mm39_v1_chr18_-_35795175_35795228	0.021904249311604992	Gli2	ENSMUST00000236574.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24	ENSMUST00000236971.2|Spata24|ENSMUSG00000024352.13|spermatogenesis associated 24
mm39_v1_chr14_+_51162425_51162463	0.021787816861362577	Gli2	ENSMUST00000049411.12|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1	ENSMUST00000136753.8|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1	ENSMUST00000154288.3|Apex1|ENSMUSG00000035960.15|apurinic/apyrimidinic endonuclease 1
mm39_v1_chr8_+_4290105_4290148	0.021702146715490016	Gli2	ENSMUST00000110994.9|Map2k7|ENSMUSG00000002948.20|mitogen-activated protein kinase kinase 7	ENSMUST00000110995.8|Map2k7|ENSMUSG00000002948.20|mitogen-activated protein kinase kinase 7
mm39_v1_chr5_+_145051090_145051126	0.021138056208501187	Gli2	ENSMUST00000196111.5|Arpc1b|ENSMUSG00000029622.17|actin related protein 2/3 complex, subunit 1B	ENSMUST00000141602.2|Arpc1b|ENSMUSG00000029622.17|actin related protein 2/3 complex, subunit 1B
mm39_v1_chr11_-_102209767_102209922	0.021126575927012777	Gli2	ENSMUST00000174302.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I	ENSMUST00000178839.8|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I	ENSMUST00000006754.14|Ubtf|ENSMUSG00000020923.18|upstream binding transcription factor, RNA polymerase I
mm39_v1_chr2_-_127324419_127324498	0.018968922726856338	Gli2	ENSMUST00000088538.6|Kcnip3|ENSMUSG00000079056.13|Kv channel interacting protein 3, calsenilin
mm39_v1_chr16_-_3895642_3895693	0.018793828441617578	Gli2	ENSMUST00000006137.9|Trap1|ENSMUSG00000005981.12|TNF receptor-associated protein 1
mm39_v1_chr5_-_137784943_137784977	0.01851773316829808	Gli2	ENSMUST00000132726.2|Mepce|ENSMUSG00000029726.17|methylphosphate capping enzyme
mm39_v1_chrX_-_95000496_95000561	0.01804415408991844	Gli2	ENSMUST00000079987.13|Las1l|ENSMUSG00000057421.13|LAS1-like (S. cerevisiae)	ENSMUST00000113864.3|Las1l|ENSMUSG00000057421.13|LAS1-like (S. cerevisiae)
mm39_v1_chr8_-_13940234_13940300	0.01694204836869394	Gli2	ENSMUST00000033839.9|Coprs|ENSMUSG00000031458.9|coordinator of PRMT5, differentiation stimulator
mm39_v1_chr12_-_69771604_69771659	0.016780425357341363	Gli2	ENSMUST00000021370.10|L2hgdh|ENSMUSG00000020988.10|L-2-hydroxyglutarate dehydrogenase
mm39_v1_chr17_+_24851647_24851688	0.015919299205421285	Gli2	ENSMUST00000047611.4|Nthl1|ENSMUSG00000041429.4|nth (endonuclease III)-like 1 (E.coli)
mm39_v1_chr9_+_108673171_108673330	0.015918197914697084	Gli2	ENSMUST00000195514.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000085018.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2	ENSMUST00000192028.6|Ip6k2|ENSMUSG00000032599.13|inositol hexaphosphate kinase 2
mm39_v1_chr13_+_21364330_21364409	0.015101802570648524	Gli2	ENSMUST00000223065.2|Trim27|ENSMUSG00000021326.14|tripartite motif-containing 27
mm39_v1_chr4_-_59783780_59783875	0.014848713116817288	Gli2	ENSMUST00000107526.8|Inip|ENSMUSG00000038544.15|INTS3 and NABP interacting protein	ENSMUST00000095063.11|Inip|ENSMUSG00000038544.15|INTS3 and NABP interacting protein
mm39_v1_chr6_-_52135261_52135332	0.014820643332875175	Gli2	ENSMUST00000000964.6|Hoxa1|ENSMUSG00000029844.10|homeobox A1	ENSMUST00000120363.2|Hoxa1|ENSMUSG00000029844.10|homeobox A1
mm39_v1_chr2_+_150590956_150590967	0.014544347593367942	Gli2	ENSMUST00000094467.6|Entpd6|ENSMUSG00000033068.17|ectonucleoside triphosphate diphosphohydrolase 6
mm39_v1_chr17_+_45874800_45874899	0.014477655336459429	Gli2	ENSMUST00000224905.2|Slc35b2|ENSMUSG00000037089.12|solute carrier family 35, member B2	ENSMUST00000226086.2|Slc35b2|ENSMUSG00000037089.12|solute carrier family 35, member B2	ENSMUST00000041353.7|Slc35b2|ENSMUSG00000037089.12|solute carrier family 35, member B2
mm39_v1_chr9_+_62249730_62249755	0.013959929585570121	Gli2	ENSMUST00000156461.2|Anp32a|ENSMUSG00000032249.15|acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
mm39_v1_chr2_+_120439858_120439872	0.013842742849124985	Gli2	ENSMUST00000124187.8|Haus2|ENSMUSG00000027285.14|HAUS augmin-like complex, subunit 2
mm39_v1_chr8_+_85786684_85786716	0.013591217012367077	Gli2	ENSMUST00000095220.4|Fbxw9|ENSMUSG00000008167.15|F-box and WD-40 domain protein 9
mm39_v1_chrX_-_9529189_9529242	0.013584428035475006	Gli2	ENSMUST00000033519.3|Dynlt3|ENSMUSG00000031176.9|dynein light chain Tctex-type 3
mm39_v1_chr9_+_50768224_50768287	0.013498880880028952	Gli2	ENSMUST00000174628.8|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta	ENSMUST00000034560.14|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta	ENSMUST00000114437.9|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta	ENSMUST00000175645.8|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta	ENSMUST00000176349.8|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta	ENSMUST00000176798.8|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta	ENSMUST00000175640.8|Ppp2r1b|ENSMUSG00000032058.15|protein phosphatase 2, regulatory subunit A, beta
mm39_v1_chr11_+_68582731_68582741	0.013031252691543748	Gli2	ENSMUST00000102611.10|Myh10|ENSMUSG00000020900.16|myosin, heavy polypeptide 10, non-muscle
mm39_v1_chr11_+_68582923_68582952	0.012653444892902514	Gli2	ENSMUST00000018887.15|Myh10|ENSMUSG00000020900.16|myosin, heavy polypeptide 10, non-muscle
mm39_v1_chr16_-_20121108_20121149	0.012408994052485385	Gli2	ENSMUST00000048642.15|Parl|ENSMUSG00000033918.17|presenilin associated, rhomboid-like	ENSMUST00000232036.2|Parl|ENSMUSG00000033918.17|presenilin associated, rhomboid-like
mm39_v1_chr9_+_106083988_106084003	0.012331318733221321	Gli2	ENSMUST00000188650.2|Twf2|ENSMUSG00000023277.14|twinfilin actin binding protein 2
mm39_v1_chr1_-_175453117_175453201	0.0120238300724492	Gli2	ENSMUST00000027810.14|Fh1|ENSMUSG00000026526.15|fumarate hydratase 1
mm39_v1_chr15_+_41310815_41310878	0.011623039590021002	Gli2	ENSMUST00000090096.11|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1	ENSMUST00000110297.10|Oxr1|ENSMUSG00000022307.17|oxidation resistance 1
mm39_v1_chr1_+_135060994_135061062	0.01160842802423706	Gli2	ENSMUST00000167080.3|Ptpn7|ENSMUSG00000031506.12|protein tyrosine phosphatase, non-receptor type 7
mm39_v1_chr4_-_119151717_119151801	0.01145507614110429	Gli2	ENSMUST00000079644.13|Ybx1|ENSMUSG00000028639.15|Y box protein 1
mm39_v1_chr17_+_28910393_28910419	0.010751352381136985	Gli2	ENSMUST00000124886.9|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14	ENSMUST00000114758.9|Mapk14|ENSMUSG00000053436.16|mitogen-activated protein kinase 14
mm39_v1_chr6_+_135175031_135175107	0.010656959132261406	Gli2	ENSMUST00000130612.2|Fam234b|ENSMUSG00000030207.16|family with sequence similarity 234, member B
mm39_v1_chr4_-_43499608_43499695	0.010564483384140557	Gli2	ENSMUST00000136005.3|Arhgef39|ENSMUSG00000051517.15|Rho guanine nucleotide exchange factor (GEF) 39	ENSMUST00000054538.13|Arhgef39|ENSMUSG00000051517.15|Rho guanine nucleotide exchange factor (GEF) 39
mm39_v1_chr12_+_69771713_69771759	0.010249655376405363	Gli2	ENSMUST00000220916.2|Dmac2l|ENSMUSG00000054894.7|distal membrane arm assembly complex 2 like	ENSMUST00000021372.6|Dmac2l|ENSMUSG00000054894.7|distal membrane arm assembly complex 2 like	ENSMUST00000220539.2|Dmac2l|ENSMUSG00000054894.7|distal membrane arm assembly complex 2 like	ENSMUST00000220460.2|Dmac2l|ENSMUSG00000054894.7|distal membrane arm assembly complex 2 like
mm39_v1_chr14_-_51162083_51162326	0.00995007992644849	Gli2	ENSMUST00000160375.8|Osgep|ENSMUSG00000006289.15|O-sialoglycoprotein endopeptidase	ENSMUST00000162177.8|Osgep|ENSMUSG00000006289.15|O-sialoglycoprotein endopeptidase
mm39_v1_chr6_+_137731526_137731598	0.009892312228410853	Gli2	ENSMUST00000203216.3|Dera|ENSMUSG00000030225.12|deoxyribose-phosphate aldolase (putative)	ENSMUST00000087675.9|Dera|ENSMUSG00000030225.12|deoxyribose-phosphate aldolase (putative)	ENSMUST00000203693.3|Dera|ENSMUSG00000030225.12|deoxyribose-phosphate aldolase (putative)
mm39_v1_chr10_-_128727542_128727587	0.009433797792741077	Gli2	ENSMUST00000026408.7|Gdf11|ENSMUSG00000025352.7|growth differentiation factor 11
mm39_v1_chr4_+_155915729_155915808	0.009184466508699217	Gli2	ENSMUST00000139651.8|Aurkaip1|ENSMUSG00000065990.13|aurora kinase A interacting protein 1	ENSMUST00000084097.12|Aurkaip1|ENSMUSG00000065990.13|aurora kinase A interacting protein 1
mm39_v1_chr7_-_132724889_132724912	0.009062742255966717	Gli2	ENSMUST00000166439.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr11_+_69523754_69523832	0.008819638951378038	Gli2	ENSMUST00000018909.4|Fxr2|ENSMUSG00000018765.6|fragile X mental retardation, autosomal homolog 2
mm39_v1_chr9_-_21150350_21150384	0.008425013816776778	Gli2	ENSMUST00000049567.10|Keap1|ENSMUSG00000003308.16|kelch-like ECH-associated protein 1	ENSMUST00000193982.2|Keap1|ENSMUSG00000003308.16|kelch-like ECH-associated protein 1
mm39_v1_chr4_+_155916087_155916155	0.008161317781848483	Gli2	ENSMUST00000105592.8|Aurkaip1|ENSMUSG00000065990.13|aurora kinase A interacting protein 1	ENSMUST00000105591.2|Aurkaip1|ENSMUSG00000065990.13|aurora kinase A interacting protein 1
mm39_v1_chr13_-_54759086_54759112	0.008060298210197889	Gli2	ENSMUST00000049575.8|Cltb|ENSMUSG00000047547.15|clathrin, light polypeptide (Lcb)
mm39_v1_chr11_-_100510992_100511036	0.00786296967745412	Gli2	ENSMUST00000014339.15|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239490.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7	ENSMUST00000239410.2|Dnajc7|ENSMUSG00000014195.17|DnaJ heat shock protein family (Hsp40) member C7
mm39_v1_chr5_-_148865429_148865480	0.007770026305831476	Gli2	ENSMUST00000149169.3|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1	ENSMUST00000047257.15|Katnal1|ENSMUSG00000041298.16|katanin p60 subunit A-like 1
mm39_v1_chr2_+_130116357_130116412	0.007466599830295459	Gli2	ENSMUST00000136621.9|Nop56|ENSMUSG00000027405.17|NOP56 ribonucleoprotein	ENSMUST00000141872.2|Nop56|ENSMUSG00000027405.17|NOP56 ribonucleoprotein
mm39_v1_chr2_+_164327988_164328051	0.0073509580348470336	Gli2	ENSMUST00000109350.9|Dbndd2|ENSMUSG00000017734.16|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm39_v1_chr17_-_56916771_56916819	0.007310545662763818	Gli2	ENSMUST00000052832.6|Micos13|ENSMUSG00000049760.7|mitochondrial contact site and cristae organizing system subunit 13
mm39_v1_chr18_+_61688329_61688361	0.007217487099924413	Gli2	ENSMUST00000165123.8|Csnk1a1|ENSMUSG00000024576.15|casein kinase 1, alpha 1
mm39_v1_chr7_-_132724344_132724513	0.00706710469688273	Gli2	ENSMUST00000167218.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr17_-_52139693_52139706	0.006878474115088369	Gli2	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr13_-_48779072_48779140	0.006325675038430202	Gli2	ENSMUST00000035824.11|Ptpdc1|ENSMUSG00000038042.12|protein tyrosine phosphatase domain containing 1
mm39_v1_chr1_-_172418058_172418149	0.0059943190734218854	Gli2	ENSMUST00000065679.8|Slamf8|ENSMUSG00000053318.8|SLAM family member 8
mm39_v1_chr5_+_117457126_117457185	0.005618133213511865	Gli2	ENSMUST00000111967.8|Vsig10|ENSMUSG00000066894.15|V-set and immunoglobulin domain containing 10
mm39_v1_chr16_+_19579651_19579804	0.005584154435381225	Gli2	ENSMUST00000119468.2|B3gnt5|ENSMUSG00000022686.15|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm39_v1_chr7_-_132725075_132725107	0.005511621535796018	Gli2	ENSMUST00000163601.8|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2	ENSMUST00000124096.8|Fgfr2|ENSMUSG00000030849.19|fibroblast growth factor receptor 2	ENSMUST00000033269.15|Ctbp2|ENSMUSG00000030970.17|C-terminal binding protein 2
mm39_v1_chr5_+_8943677_8943744	0.0054642087178360665	Gli2	ENSMUST00000003717.13|Abcb4|ENSMUSG00000042476.13|ATP-binding cassette, sub-family B (MDR/TAP), member 4
mm39_v1_chr12_+_38830081_38830116	0.005414280894686054	Gli2	ENSMUST00000095767.11|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr1_-_93406515_93406544	0.005112303877529744	Gli2	ENSMUST00000170883.8|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein	ENSMUST00000189025.7|Hdlbp|ENSMUSG00000034088.16|high density lipoprotein (HDL) binding protein
mm39_v1_chr2_+_130116344_130116355	0.004865301864696642	Gli2	ENSMUST00000103198.11|Nop56|ENSMUSG00000027405.17|NOP56 ribonucleoprotein
mm39_v1_chr7_+_140908033_140908097	0.004776118245878867	Gli2	ENSMUST00000133012.8|Tmem80|ENSMUSG00000025505.17|transmembrane protein 80	ENSMUST00000026578.14|Tmem80|ENSMUSG00000025505.17|transmembrane protein 80
mm39_v1_chr2_+_69691906_69691950	0.00467706526998754	Gli2	ENSMUST00000090852.11|Ssb|ENSMUSG00000068882.14|Sjogren syndrome antigen B	ENSMUST00000166411.8|Ssb|ENSMUSG00000068882.14|Sjogren syndrome antigen B
mm39_v1_chr10_-_18890281_18890337	0.004411581107838265	Gli2	ENSMUST00000146388.2|Tnfaip3|ENSMUSG00000019850.12|tumor necrosis factor, alpha-induced protein 3
mm39_v1_chr9_+_100525807_100525823	0.004357616961999617	Gli2	ENSMUST00000133388.2|Stag1|ENSMUSG00000037286.16|stromal antigen 1
mm39_v1_chr17_+_47905553_47905681	0.004128794015195012	Gli2	ENSMUST00000182846.3|Ccnd3|ENSMUSG00000034165.17|cyclin D3
mm39_v1_chr9_+_44966464_44966494	0.0040644333602274305	Gli2	ENSMUST00000114664.8|Mpzl3|ENSMUSG00000070305.11|myelin protein zero-like 3
mm39_v1_chr7_-_81104423_81104512	0.003840566107587642	Gli2	ENSMUST00000178892.3|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1	ENSMUST00000098331.10|Cpeb1|ENSMUSG00000025586.18|cytoplasmic polyadenylation element binding protein 1
mm39_v1_chr4_-_140376047_140376093	0.0037400267549660337	Gli2	ENSMUST00000105799.8|Arhgef10l|ENSMUSG00000040964.17|Rho guanine nucleotide exchange factor (GEF) 10-like	ENSMUST00000039204.10|Arhgef10l|ENSMUSG00000040964.17|Rho guanine nucleotide exchange factor (GEF) 10-like	ENSMUST00000097820.9|Arhgef10l|ENSMUSG00000040964.17|Rho guanine nucleotide exchange factor (GEF) 10-like
mm39_v1_chr3_+_36606750_36606826	0.003704105483216912	Gli2	ENSMUST00000029269.12|Exosc9|ENSMUSG00000027714.12|exosome component 9	ENSMUST00000136890.2|Exosc9|ENSMUSG00000027714.12|exosome component 9
mm39_v1_chr12_+_38830283_38830348	0.003590364027162003	Gli2	ENSMUST00000162563.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000161164.8|Etv1|ENSMUSG00000004151.18|ets variant 1	ENSMUST00000160996.8|Etv1|ENSMUSG00000004151.18|ets variant 1
mm39_v1_chr2_-_35869636_35869813	0.00345902037417927	Gli2	ENSMUST00000028248.11|Ttll11|ENSMUSG00000026885.14|tubulin tyrosine ligase-like family, member 11	ENSMUST00000112976.9|Ttll11|ENSMUSG00000026885.14|tubulin tyrosine ligase-like family, member 11
mm39_v1_chr11_+_29476385_29476420	0.003436232762288745	Gli2	ENSMUST00000133452.8|Mtif2|ENSMUSG00000020459.15|mitochondrial translational initiation factor 2
mm39_v1_chr18_+_38383297_38383340	0.003426207760928596	Gli2	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr1_-_180027151_180027172	0.003267347146333597	Gli2	ENSMUST00000161743.3|Coq8a|ENSMUSG00000026489.14|coenzyme Q8A
mm39_v1_chr17_-_84495364_84495381	0.0031706616713870935	Gli2	ENSMUST00000060366.7|Zfp36l2|ENSMUSG00000045817.9|zinc finger protein 36, C3H type-like 2
mm39_v1_chr2_+_84867783_84867874	0.00309400255613609	Gli2	ENSMUST00000168266.8|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1	ENSMUST00000130729.3|Ssrp1|ENSMUSG00000027067.17|structure specific recognition protein 1
mm39_v1_chr12_-_32000169_32000196	0.00299573023348965	Gli2	ENSMUST00000176520.8|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr9_+_114230144_114230195	0.002957502193349823	Gli2	ENSMUST00000063042.11|Glb1|ENSMUSG00000045594.11|galactosidase, beta 1	ENSMUST00000111820.4|Tmppe|ENSMUSG00000079260.4|transmembrane protein with metallophosphoesterase domain
mm39_v1_chr6_-_72766224_72766245	0.002875769371695535	Gli2	ENSMUST00000069536.12|Tcf7l1|ENSMUSG00000055799.14|transcription factor 7 like 1 (T cell specific, HMG box)
mm39_v1_chr7_+_130294262_130294305	0.002673258203258056	Gli2	ENSMUST00000033141.7|Tacc2|ENSMUSG00000030852.19|transforming, acidic coiled-coil containing protein 2
mm39_v1_chr1_-_119924920_119924980	0.002645629787888788	Gli2	ENSMUST00000174370.8|Cfap221|ENSMUSG00000036962.13|cilia and flagella associated protein 221	ENSMUST00000174458.2|Cfap221|ENSMUSG00000036962.13|cilia and flagella associated protein 221
mm39_v1_chr17_-_26163906_26163910	0.002507075969591162	Gli2	ENSMUST00000085027.4|Nhlrc4|ENSMUSG00000090113.8|NHL repeat containing 4	ENSMUST00000237570.2|Pigq|ENSMUSG00000025728.17|phosphatidylinositol glycan anchor biosynthesis, class Q
mm39_v1_chr15_-_77854988_77855019	0.002401248044434045	Gli2	ENSMUST00000100484.6|Eif3d|ENSMUSG00000016554.10|eukaryotic translation initiation factor 3, subunit D
mm39_v1_chr11_-_118800314_118800398	0.0021638232350096884	Gli2	ENSMUST00000117731.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000106278.9|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000120061.8|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3	ENSMUST00000017576.11|Rbfox3|ENSMUSG00000025576.18|RNA binding protein, fox-1 homolog (C. elegans) 3
mm39_v1_chr13_+_13612136_13612136	0.001941455289833572	Gli2	ENSMUST00000005532.9|Nid1|ENSMUSG00000005397.9|nidogen 1
mm39_v1_chr6_+_120643323_120643386	0.001931772139152386	Gli2	ENSMUST00000112686.8|Cecr2|ENSMUSG00000071226.12|CECR2, histone acetyl-lysine reader
mm39_v1_chr4_-_83404690_83404717	0.0019219740250358776	Gli2	ENSMUST00000107214.9|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1	ENSMUST00000107215.9|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1	ENSMUST00000030207.15|Psip1|ENSMUSG00000028484.17|PC4 and SFRS1 interacting protein 1
mm39_v1_chr2_-_120439981_120440005	0.001841988651613839	Gli2	ENSMUST00000133612.2|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57	ENSMUST00000102498.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57	ENSMUST00000102499.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57
mm39_v1_chr2_+_69691982_69692030	0.0016048426525795804	Gli2	ENSMUST00000112260.3|Ssb|ENSMUSG00000068882.14|Sjogren syndrome antigen B
mm39_v1_chr6_-_72765935_72766044	0.0015793383448193456	Gli2	ENSMUST00000114053.9|Tcf7l1|ENSMUSG00000055799.14|transcription factor 7 like 1 (T cell specific, HMG box)
mm39_v1_chr4_+_111272156_111272233	0.0015631326119549568	Gli2	ENSMUST00000030274.7|Bend5|ENSMUSG00000028545.14|BEN domain containing 5
mm39_v1_chr7_-_30349548_30349742	0.0015488516465444048	Gli2	ENSMUST00000108141.2|Rbm42|ENSMUSG00000036733.17|RNA binding motif protein 42	ENSMUST00000042726.14|Rbm42|ENSMUSG00000036733.17|RNA binding motif protein 42
mm39_v1_chr12_+_69771761_69771778	0.0015290193852768312	Gli2	ENSMUST00000222950.2|Dmac2l|ENSMUSG00000054894.7|distal membrane arm assembly complex 2 like
mm39_v1_chr19_-_38113249_38113276	0.001517243347734541	Gli2	ENSMUST00000112335.4|Rbp4|ENSMUSG00000024990.14|retinol binding protein 4, plasma
mm39_v1_chr1_-_36484328_36484352	0.001471067361611335	Gli2	ENSMUST00000125304.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like	ENSMUST00000115011.8|Lman2l|ENSMUSG00000001143.14|lectin, mannose-binding 2-like
mm39_v1_chr7_+_44813363_44813448	0.0014553340661586126	Gli2	ENSMUST00000085374.7|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	ENSMUST00000209634.2|Slc17a7|ENSMUSG00000070570.6|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7
mm39_v1_chr11_-_68762664_68762701	0.0012822344766221228	Gli2	ENSMUST00000101017.9|Ndel1|ENSMUSG00000018736.15|nudE neurodevelopment protein 1 like 1
mm39_v1_chr7_+_102576837_102576837	0.0012297854458236763	Gli2	ENSMUST00000098214.2|Olfr572|ENSMUSG00000073963.4|olfactory receptor 572
mm39_v1_chr4_-_150039486_150039507	0.0011783024150116565	Gli2	ENSMUST00000038562.9|Spsb1|ENSMUSG00000039911.14|splA/ryanodine receptor domain and SOCS box containing 1
mm39_v1_chr5_+_144127102_144127152	0.0011668230723443631	Gli2	ENSMUST00000060747.8|Bhlha15|ENSMUSG00000052271.8|basic helix-loop-helix family, member a15
mm39_v1_chr5_-_53370761_53370826	0.0011416725849577505	Gli2	ENSMUST00000031090.8|Sel1l3|ENSMUSG00000029189.11|sel-1 suppressor of lin-12-like 3 (C. elegans)
mm39_v1_chr13_-_22403990_22403990	0.0011247720854079975	Gli2	ENSMUST00000057516.2|Vmn1r193|ENSMUSG00000046932.3|vomeronasal 1 receptor 193
mm39_v1_chr4_+_116953218_116953280	0.0010897349584554471	Gli2	ENSMUST00000030443.12|Ptch2|ENSMUSG00000028681.12|patched 2
mm39_v1_chr2_-_120439764_120439798	0.0010620246473920002	Gli2	ENSMUST00000102496.8|Lrrc57|ENSMUSG00000027286.17|leucine rich repeat containing 57
mm39_v1_chr15_-_78602313_78602313	0.0009629447972544457	Gli2	ENSMUST00000229441.2|Elfn2|ENSMUSG00000043460.8|leucine rich repeat and fibronectin type III, extracellular 2
mm39_v1_chr11_+_72687080_72687093	0.0007967910604210645	Gli2	ENSMUST00000207107.2|Zzef1|ENSMUSG00000055670.15|zinc finger, ZZ-type with EF hand domain 1
mm39_v1_chr11_-_70924288_70924339	0.0006835650846660998	Gli2	ENSMUST00000238695.2|6330403K07Rik|ENSMUSG00000018451.8|RIKEN cDNA 6330403K07 gene
mm39_v1_chr2_-_87955337_87955337	0.0006618118459115755	Gli2	ENSMUST00000099833.6|Olfr1166|ENSMUSG00000101078.4|olfactory receptor 1166
mm39_v1_chr15_-_56557920_56557950	0.0006038846541773768	Gli2	ENSMUST00000050544.8|Has2|ENSMUSG00000022367.8|hyaluronan synthase 2
mm39_v1_chr9_+_13573756_13573899	0.0005668362830219518	Gli2	ENSMUST00000177755.3|Maml2|ENSMUSG00000031925.18|mastermind like transcriptional coactivator 2
mm39_v1_chr11_-_94595325_94595325	0.000561125940666954	Gli2	ENSMUST00000069852.2|Gm11541|ENSMUSG00000056008.2|predicted gene 11541
mm39_v1_chr9_+_24009292_24009314	0.00035005012828649034	Gli2	ENSMUST00000133787.8|Npsr1|ENSMUSG00000043659.12|neuropeptide S receptor 1	ENSMUST00000059650.11|Npsr1|ENSMUSG00000043659.12|neuropeptide S receptor 1
mm39_v1_chr2_+_85600147_85600147	0.00034000261314555657	Gli2	ENSMUST00000065626.3|Olfr1013|ENSMUSG00000053287.5|olfactory receptor 1013
mm39_v1_chr10_-_129811436_129811436	0.0003267472035439007	Gli2	ENSMUST00000170920.2|Olfr247|ENSMUSG00000095608.4|olfactory receptor 247
mm39_v1_chr14_-_55354392_55354437	0.00030608775296290917	Gli2	ENSMUST00000022819.13|Jph4|ENSMUSG00000022208.13|junctophilin 4
mm39_v1_chr16_+_17798292_17798292	0.00020671097762738506	Gli2	ENSMUST00000075371.5|Vpreb2|ENSMUSG00000059280.5|pre-B lymphocyte gene 2
mm39_v1_chr11_-_41891359_41891421	0.0001106212709059864	Gli2	ENSMUST00000070735.10|Gabrg2|ENSMUSG00000020436.18|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm39_v1_chr7_-_12374246_12374246	0.0001014902074440733	Gli2	ENSMUST00000233287.2|Vmn2r54|ENSMUSG00000096593.3|vomeronasal 2, receptor 54
mm39_v1_chr11_+_70506716_70506736	7.339157233058007e-05	Gli2	ENSMUST00000144960.2|4930544D05Rik|ENSMUSG00000087279.11|RIKEN cDNA 4930544D05 gene
mm39_v1_chrX_+_99773784_99773795	6.771164584594876e-05	Gli2	ENSMUST00000113744.2|Gdpd2|ENSMUSG00000019359.15|glycerophosphodiester phosphodiesterase domain containing 2
