mm39_v1_chr13_-_12355604_12355641	4.453894273131031	Hoxa1	ENSMUST00000168193.8|Actn2|ENSMUSG00000052374.17|actinin alpha 2	ENSMUST00000064204.14|Actn2|ENSMUSG00000052374.17|actinin alpha 2
mm39_v1_chr2_+_158217558_158217641	1.007771846943168	Hoxa1	ENSMUST00000109488.8|Snhg11|ENSMUSG00000044349.17|small nucleolar RNA host gene 11
mm39_v1_chr4_+_138503046_138503095	0.6907602748193783	Hoxa1	ENSMUST00000030528.9|Pla2g2d|ENSMUSG00000041202.13|phospholipase A2, group IID
mm39_v1_chr10_+_81068980_81069025	0.6680842572215177	Hoxa1	ENSMUST00000144087.2|Zfr2|ENSMUSG00000034949.19|zinc finger RNA binding protein 2	ENSMUST00000117798.8|Zfr2|ENSMUSG00000034949.19|zinc finger RNA binding protein 2
mm39_v1_chr18_+_82929451_82929458	0.6251305588394345	Hoxa1	ENSMUST00000235902.2|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr14_+_50656083_50656083	0.5497171325751623	Hoxa1	ENSMUST00000216949.2|Olfr739|ENSMUSG00000057903.5|olfactory receptor 739
mm39_v1_chrX_-_133062677_133062677	0.4531136856799656	Hoxa1	ENSMUST00000033611.5|Xkrx|ENSMUSG00000031258.5|X-linked Kx blood group related, X-linked
mm39_v1_chr15_+_6552270_6552346	0.4399759528046919	Hoxa1	ENSMUST00000226412.2|Fyb|ENSMUSG00000022148.17|FYN binding protein
mm39_v1_chr12_-_80307110_80307145	0.4277809646773119	Hoxa1	ENSMUST00000021554.16|Actn1|ENSMUSG00000015143.16|actinin, alpha 1
mm39_v1_chr1_+_153750081_153750100	0.4110488913556236	Hoxa1	ENSMUST00000055314.4|Teddm1b|ENSMUSG00000043282.4|transmembrane epididymal protein 1B
mm39_v1_chr4_-_106656976_106657043	0.40948111345393123	Hoxa1	ENSMUST00000145061.8|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11	ENSMUST00000102762.10|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11
mm39_v1_chrX_+_109857866_109857886	0.40027271454304425	Hoxa1	ENSMUST00000078229.5|Pou3f4|ENSMUSG00000056854.5|POU domain, class 3, transcription factor 4
mm39_v1_chr13_+_41040657_41040675	0.37943249038740007	Hoxa1	ENSMUST00000069958.15|Gcnt2|ENSMUSG00000021360.17|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm39_v1_chr14_-_69522431_69522561	0.3558570066545687	Hoxa1	ENSMUST00000183882.2|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37	ENSMUST00000037064.5|Slc25a37|ENSMUSG00000034248.8|solute carrier family 25, member 37
mm39_v1_chr14_-_69740670_69740811	0.35404798495674317	Hoxa1	ENSMUST00000180059.3|Gm16867|ENSMUSG00000093954.9|predicted gene, 16867	ENSMUST00000179116.3|Gm16867|ENSMUSG00000093954.9|predicted gene, 16867
mm39_v1_chr11_-_99134885_99134964	0.3358972418885915	Hoxa1	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr7_-_103320398_103320398	0.3301483706441548	Hoxa1	ENSMUST00000062144.4|Olfr624|ENSMUSG00000045780.4|olfactory receptor 624
mm39_v1_chr7_-_102507962_102507972	0.3285219041029035	Hoxa1	ENSMUST00000213481.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566	ENSMUST00000209952.2|Olfr566|ENSMUSG00000060888.5|olfactory receptor 566
mm39_v1_chr19_+_42040681_42040697	0.31934899233759484	Hoxa1	ENSMUST00000164518.4|4933411K16Rik|ENSMUSG00000090369.4|RIKEN cDNA 4933411K16 gene
mm39_v1_chr2_-_104324035_104324098	0.31721253276442146	Hoxa1	ENSMUST00000111124.8|Hipk3|ENSMUSG00000027177.15|homeodomain interacting protein kinase 3
mm39_v1_chr3_+_97920819_97920863	0.3150216199995491	Hoxa1	ENSMUST00000079812.8|Notch2|ENSMUSG00000027878.12|notch 2
mm39_v1_chr17_-_25300112_25300175	0.2945083188673489	Hoxa1	ENSMUST00000024984.7|Tmem204|ENSMUSG00000024168.9|transmembrane protein 204
mm39_v1_chr19_-_47452557_47452686	0.2928709224745961	Hoxa1	ENSMUST00000111800.4|Sh3pxd2a|ENSMUSG00000053617.13|SH3 and PX domains 2A
mm39_v1_chr9_-_21223631_21223642	0.28820904459322716	Hoxa1	ENSMUST00000115433.11|Ap1m2|ENSMUSG00000003309.15|adaptor protein complex AP-1, mu 2 subunit
mm39_v1_chr19_+_45036037_45036113	0.2840594280634456	Hoxa1	ENSMUST00000062213.13|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3
mm39_v1_chr3_+_138058139_138058139	0.2764454302401004	Hoxa1	ENSMUST00000090166.5|Adh6b|ENSMUSG00000074206.8|alcohol dehydrogenase 6B (class V)
mm39_v1_chr15_+_89095724_89095823	0.26997303283049506	Hoxa1	ENSMUST00000227951.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000226221.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000238818.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2	ENSMUST00000228284.2|Ppp6r2|ENSMUSG00000036561.10|protein phosphatase 6, regulatory subunit 2
mm39_v1_chr19_+_45036220_45036278	0.2694444983364692	Hoxa1	ENSMUST00000084493.8|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3
mm39_v1_chr5_+_88731386_88731449	0.2688943025570437	Hoxa1	ENSMUST00000031229.11|Rufy3|ENSMUSG00000029291.12|RUN and FYVE domain containing 3
mm39_v1_chr14_+_56813060_56813091	0.26408441988953296	Hoxa1	ENSMUST00000161553.2|Parp4|ENSMUSG00000054509.8|poly (ADP-ribose) polymerase family, member 4
mm39_v1_chr11_+_24030663_24030706	0.2415943542553188	Hoxa1	ENSMUST00000118955.2|Bcl11a|ENSMUSG00000000861.16|B cell CLL/lymphoma 11A (zinc finger protein)
mm39_v1_chr15_+_9140614_9140664	0.2394082400652651	Hoxa1	ENSMUST00000227556.3|Lmbrd2|ENSMUSG00000039704.9|LMBR1 domain containing 2
mm39_v1_chr4_+_43669266_43669329	0.2341950300908866	Hoxa1	ENSMUST00000107864.8|Tmem8b|ENSMUSG00000078716.11|transmembrane protein 8B
mm39_v1_chr17_-_28841370_28841496	0.2084699786213411	Hoxa1	ENSMUST00000233129.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1	ENSMUST00000232751.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1	ENSMUST00000233794.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1	ENSMUST00000114767.3|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1
mm39_v1_chr13_+_63387870_63387908	0.20137773546806406	Hoxa1	ENSMUST00000159152.3|Aopep|ENSMUSG00000021458.18|aminopeptidase O	ENSMUST00000221820.2|Aopep|ENSMUSG00000021458.18|aminopeptidase O
mm39_v1_chr16_+_38722666_38722678	0.1985837393122333	Hoxa1	ENSMUST00000023478.8|Igsf11|ENSMUSG00000022790.15|immunoglobulin superfamily, member 11
mm39_v1_chr9_+_78303059_78303128	0.19562723963294512	Hoxa1	ENSMUST00000113367.2|Ddx43|ENSMUSG00000070291.5|DEAD box helicase 43
mm39_v1_chr2_+_119803230_119803384	0.1882079806058395	Hoxa1	ENSMUST00000229024.2|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr12_-_80306865_80306973	0.17344203373233286	Hoxa1	ENSMUST00000167327.2|Actn1|ENSMUSG00000015143.16|actinin, alpha 1
mm39_v1_chr5_-_107437427_107437514	0.1705780545539698	Hoxa1	ENSMUST00000031224.15|Tgfbr3|ENSMUSG00000029287.15|transforming growth factor, beta receptor III
mm39_v1_chr4_-_145041710_145041739	0.16618890572451317	Hoxa1	ENSMUST00000030339.13|Tnfrsf8|ENSMUSG00000028602.13|tumor necrosis factor receptor superfamily, member 8
mm39_v1_chr17_+_45866618_45866643	0.1625486842331935	Hoxa1	ENSMUST00000024742.9|Nfkbie|ENSMUSG00000023947.9|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	ENSMUST00000233929.2|Nfkbie|ENSMUSG00000023947.9|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon
mm39_v1_chr10_+_67021509_67021547	0.1543264856658131	Hoxa1	ENSMUST00000173689.8|Jmjd1c|ENSMUSG00000037876.18|jumonji domain containing 1C
mm39_v1_chr19_+_45035942_45036015	0.153511952193783	Hoxa1	ENSMUST00000237222.2|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3	ENSMUST00000111954.11|Sfxn3|ENSMUSG00000025212.18|sideroflexin 3
mm39_v1_chr17_-_28841006_28841055	0.15163857694775057	Hoxa1	ENSMUST00000233353.2|Srpk1|ENSMUSG00000004865.17|serine/arginine-rich protein specific kinase 1
mm39_v1_chrX_+_55500170_55500264	0.1502897304746878	Hoxa1	ENSMUST00000039374.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000101553.9|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like	ENSMUST00000186445.7|Ints6l|ENSMUSG00000035967.16|integrator complex subunit 6 like
mm39_v1_chr14_-_104081827_104081839	0.14613439956654628	Hoxa1	ENSMUST00000022718.11|Ednrb|ENSMUSG00000022122.16|endothelin receptor type B
mm39_v1_chr5_+_125518609_125518678	0.1460769593859605	Hoxa1	ENSMUST00000049040.14|Bri3bp|ENSMUSG00000037905.14|Bri3 binding protein
mm39_v1_chr2_+_119803180_119803228	0.12972312152314736	Hoxa1	ENSMUST00000066058.8|Mapkbp1|ENSMUSG00000033902.13|mitogen-activated protein kinase binding protein 1
mm39_v1_chr18_+_4994600_4994623	0.1254277520569314	Hoxa1	ENSMUST00000140448.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr3_+_58913234_58913286	0.11617874035422592	Hoxa1	ENSMUST00000040846.15|Med12l|ENSMUSG00000056476.14|mediator complex subunit 12-like
mm39_v1_chr2_+_165436929_165437000	0.11333630423545074	Hoxa1	ENSMUST00000088132.13|Eya2|ENSMUSG00000017897.19|EYA transcriptional coactivator and phosphatase 2
mm39_v1_chr8_+_11362805_11362867	0.10302068679694779	Hoxa1	ENSMUST00000033899.14|Col4a2|ENSMUSG00000031503.14|collagen, type IV, alpha 2
mm39_v1_chr2_-_103315483_103315505	0.09777977898071237	Hoxa1	ENSMUST00000028610.10|Cat|ENSMUSG00000027187.11|catalase
mm39_v1_chr2_-_63014622_63014681	0.0956652462812902	Hoxa1	ENSMUST00000075052.10|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7	ENSMUST00000112454.8|Kcnh7|ENSMUSG00000059742.11|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm39_v1_chr10_-_125225298_125225422	0.08895683656807779	Hoxa1	ENSMUST00000210780.2|Slc16a7|ENSMUSG00000020102.16|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm39_v1_chr5_+_43672856_43672881	0.08351371778203807	Hoxa1	ENSMUST00000076939.10|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr18_-_56695333_56695400	0.08308624021437688	Hoxa1	ENSMUST00000066208.13|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1	ENSMUST00000172734.8|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1
mm39_v1_chr6_-_136852792_136852821	0.07949662204458598	Hoxa1	ENSMUST00000032342.3|Mgp|ENSMUSG00000030218.3|matrix Gla protein
mm39_v1_chr4_-_143026068_143026134	0.07907057501514296	Hoxa1	ENSMUST00000030317.14|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chrX_-_7999009_7999096	0.07871500467048696	Hoxa1	ENSMUST00000130832.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000033506.13|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000115623.8|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13	ENSMUST00000153839.2|Wdr13|ENSMUSG00000031166.14|WD repeat domain 13
mm39_v1_chr19_+_46385321_46385443	0.07696707269004234	Hoxa1	ENSMUST00000039922.13|Sufu|ENSMUSG00000025231.18|SUFU negative regulator of hedgehog signaling	ENSMUST00000111867.9|Sufu|ENSMUSG00000025231.18|SUFU negative regulator of hedgehog signaling	ENSMUST00000120778.8|Sufu|ENSMUSG00000025231.18|SUFU negative regulator of hedgehog signaling
mm39_v1_chr15_-_53209513_53209565	0.07536162328385665	Hoxa1	ENSMUST00000077273.9|Ext1|ENSMUSG00000061731.10|exostosin glycosyltransferase 1
mm39_v1_chr2_-_165717697_165717753	0.07321804747509716	Hoxa1	ENSMUST00000153655.8|Zmynd8|ENSMUSG00000039671.19|zinc finger, MYND-type containing 8
mm39_v1_chr5_+_42225303_42225303	0.07071403847930317	Hoxa1	ENSMUST00000087332.5|Gm16223|ENSMUSG00000067285.5|predicted gene 16223
mm39_v1_chr6_+_15727798_15727818	0.07025444376632872	Hoxa1	ENSMUST00000128849.3|Mdfic|ENSMUSG00000041390.19|MyoD family inhibitor domain containing
mm39_v1_chr15_-_9140460_9140526	0.06845525534243997	Hoxa1	ENSMUST00000110585.10|Skp2|ENSMUSG00000054115.13|S-phase kinase-associated protein 2
mm39_v1_chr2_+_152804405_152804430	0.06636993571670918	Hoxa1	ENSMUST00000099197.9|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9	ENSMUST00000103155.10|Ttll9|ENSMUSG00000074673.16|tubulin tyrosine ligase-like family, member 9
mm39_v1_chr7_-_144024451_144024512	0.05985016883728946	Hoxa1	ENSMUST00000033407.13|Cttn|ENSMUSG00000031078.16|cortactin
mm39_v1_chr15_+_82136598_82136676	0.059058995719598814	Hoxa1	ENSMUST00000136948.3|1500009C09Rik|ENSMUSG00000068099.6|RIKEN cDNA 1500009C09 gene
mm39_v1_chr4_-_106657446_106657500	0.05815949388879829	Hoxa1	ENSMUST00000148688.2|Acot11|ENSMUSG00000034853.17|acyl-CoA thioesterase 11
mm39_v1_chr5_+_24679154_24679212	0.05659236099000757	Hoxa1	ENSMUST00000199856.2|Agap3|ENSMUSG00000023353.15|ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
mm39_v1_chr11_+_86375441_86375543	0.04906178444172995	Hoxa1	ENSMUST00000020827.7|Rnft1|ENSMUSG00000020521.8|ring finger protein, transmembrane 1
mm39_v1_chr18_+_82929037_82929069	0.04111388785177162	Hoxa1	ENSMUST00000236858.2|Zfp516|ENSMUSG00000058881.14|zinc finger protein 516
mm39_v1_chr19_-_3625698_3625756	0.037858184284622065	Hoxa1	ENSMUST00000172362.3|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000025846.16|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000226109.2|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3	ENSMUST00000113997.9|Ppp6r3|ENSMUSG00000024908.16|protein phosphatase 6, regulatory subunit 3
mm39_v1_chr4_-_143026033_143026052	0.03741576181675578	Hoxa1	ENSMUST00000119654.2|Pdpn|ENSMUSG00000028583.15|podoplanin
mm39_v1_chr19_-_41732104_41732145	0.03262136376234239	Hoxa1	ENSMUST00000025993.10|Slit1|ENSMUSG00000025020.12|slit guidance ligand 1
mm39_v1_chr6_-_51989456_51989531	0.031020969208161497	Hoxa1	ENSMUST00000078214.8|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2	ENSMUST00000204778.3|Skap2|ENSMUSG00000059182.9|src family associated phosphoprotein 2
mm39_v1_chr5_+_137059127_137059218	0.02759553121196334	Hoxa1	ENSMUST00000041543.9|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible	ENSMUST00000186451.2|Vgf|ENSMUSG00000037428.15|VGF nerve growth factor inducible
mm39_v1_chr1_+_153541020_153541071	0.027321485482975034	Hoxa1	ENSMUST00000152114.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8	ENSMUST00000111812.8|Rgs8|ENSMUSG00000042671.13|regulator of G-protein signaling 8
mm39_v1_chr18_-_56695288_56695325	0.02532386578739797	Hoxa1	ENSMUST00000170309.8|Aldh7a1|ENSMUSG00000053644.14|aldehyde dehydrogenase family 7, member A1
mm39_v1_chr6_-_21851827_21852182	0.02280777391290979	Hoxa1	ENSMUST00000202353.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000134635.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000123116.8|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000120965.8|Tspan12|ENSMUSG00000029669.15|tetraspanin 12	ENSMUST00000143531.2|Tspan12|ENSMUSG00000029669.15|tetraspanin 12
mm39_v1_chr3_-_79053182_79053237	0.021916792421365947	Hoxa1	ENSMUST00000118340.7|Rapgef2|ENSMUSG00000062232.15|Rap guanine nucleotide exchange factor (GEF) 2
mm39_v1_chrX_-_36432482_36432509	0.019208315305156678	Hoxa1	ENSMUST00000046557.6|Akap14|ENSMUSG00000036551.7|A kinase (PRKA) anchor protein 14
mm39_v1_chr3_-_57202546_57202562	0.01833930621272295	Hoxa1	ENSMUST00000196506.2|Tm4sf1|ENSMUSG00000027800.15|transmembrane 4 superfamily member 1
mm39_v1_chr13_-_103901010_103901090	0.017877517453620845	Hoxa1	ENSMUST00000210489.2|Srek1|ENSMUSG00000032621.9|splicing regulatory glutamine/lysine-rich protein 1
mm39_v1_chr15_-_78272957_78272977	0.01721279196989221	Hoxa1	ENSMUST00000169575.2|Tex33|ENSMUSG00000062154.15|testis expressed 33
mm39_v1_chr13_+_113429690_113429759	0.011634520667524328	Hoxa1	ENSMUST00000136755.10|Cspg4b|ENSMUSG00000021763.18|chondroitin sulfate proteoglycan 4B
mm39_v1_chr11_-_69439934_69439934	0.0089004522286283	Hoxa1	ENSMUST00000108659.2|Dnah2|ENSMUSG00000005237.15|dynein, axonemal, heavy chain 2
mm39_v1_chr10_-_33500583_33500765	0.00791784696313391	Hoxa1	ENSMUST00000161692.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000160299.2|Clvs2|ENSMUSG00000019785.15|clavesin 2	ENSMUST00000019920.13|Clvs2|ENSMUSG00000019785.15|clavesin 2
mm39_v1_chr12_-_8351954_8351994	0.007570786698409069	Hoxa1	ENSMUST00000220073.2|Gdf7|ENSMUSG00000037660.6|growth differentiation factor 7	ENSMUST00000037313.6|Gdf7|ENSMUSG00000037660.6|growth differentiation factor 7
mm39_v1_chr9_-_4796217_4796267	0.003906280197386453	Hoxa1	ENSMUST00000027020.13|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)	ENSMUST00000163309.2|Gria4|ENSMUSG00000025892.17|glutamate receptor, ionotropic, AMPA4 (alpha 4)
mm39_v1_chrX_-_119222792_119222792	0.0032409255418315774	Hoxa1	ENSMUST00000122050.2|H2ab3|ENSMUSG00000083616.4|H2A.B variant histone 3
mm39_v1_chr18_+_37108994_37108994	0.0018855091208708423	Hoxa1	ENSMUST00000193984.2|Gm37388|ENSMUSG00000103125.2|predicted gene, 37388
mm39_v1_chr2_+_156317416_156317483	0.0005144245737419239	Hoxa1	ENSMUST00000029155.16|Epb41l1|ENSMUSG00000027624.21|erythrocyte membrane protein band 4.1 like 1
