mm39_v1_chr13_-_23806530_23806547	6.189305296880177	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062045.4|H1f4|ENSMUSG00000051627.4|H1.4 linker histone, cluster member
mm39_v1_chr13_+_23765546_23765581	3.84050986543672	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102968.3|H4c4|ENSMUSG00000061482.8|H4 clustered histone 4
mm39_v1_chr1_-_71692320_71692359	2.467216635213859	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186940.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188894.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000188674.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000189821.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000187938.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000190780.7|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186736.2|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000055226.13|Fn1|ENSMUSG00000026193.16|fibronectin 1	ENSMUST00000186129.7|Fn1|ENSMUSG00000026193.16|fibronectin 1
mm39_v1_chr8_-_5155347_5155358	1.6116558871618596	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023835.3|Slc10a2|ENSMUSG00000023073.3|solute carrier family 10, member 2
mm39_v1_chr2_+_84818538_84818559	1.356853953869307	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028466.12|Prg3|ENSMUSG00000027072.14|proteoglycan 3
mm39_v1_chr13_-_22219738_22219774	1.2994537447209913	Hoxd11_Cdx1_Hoxc11	ENSMUST00000091742.6|H2ac12|ENSMUSG00000069302.6|H2A clustered histone 12
mm39_v1_chr1_+_59296065_59296066	1.221462792429558	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160662.8|Cdk15|ENSMUSG00000026023.17|cyclin-dependent kinase 15	ENSMUST00000114248.3|Cdk15|ENSMUSG00000026023.17|cyclin-dependent kinase 15
mm39_v1_chr5_-_25305621_25305655	1.1982653731302062	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030784.14|Prkag2|ENSMUSG00000028944.15|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm39_v1_chr13_-_21967540_21967576	1.1334158469959106	Hoxd11_Cdx1_Hoxc11	ENSMUST00000189457.2|H3c11|ENSMUSG00000101972.2|H3 clustered histone 11
mm39_v1_chr3_-_96128196_96128215	1.1323438979263978	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090782.4|H2ac20|ENSMUSG00000068855.4|H2A clustered histone 20
mm39_v1_chr13_+_22220000_22220040	1.1118697729284577	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110455.4|H2bc12|ENSMUSG00000062727.5|H2B clustered histone 12
mm39_v1_chr16_-_55659194_55659262	1.0700927650672176	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096026.9|Nfkbiz|ENSMUSG00000035356.18|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	ENSMUST00000036273.13|Nfkbiz|ENSMUSG00000035356.18|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	ENSMUST00000114457.8|Nfkbiz|ENSMUSG00000035356.18|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
mm39_v1_chr3_+_66892979_66893026	1.054100277396005	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162362.8|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000065074.14|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000065047.13|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1
mm39_v1_chr2_-_18053158_18053260	1.0271050546853273	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066885.6|Skida1|ENSMUSG00000054074.10|SKI/DACH domain containing 1
mm39_v1_chr11_+_50905063_50905184	1.0224887194448198	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217480.2|Olfr54|ENSMUSG00000059397.3|olfactory receptor 54	ENSMUST00000215409.2|Olfr54|ENSMUSG00000059397.3|olfactory receptor 54
mm39_v1_chr7_-_73187369_73187513	1.0063538566750778	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172704.6|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr1_+_74752710_74752733	1.0040187674488563	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027356.7|Cyp27a1|ENSMUSG00000026170.7|cytochrome P450, family 27, subfamily a, polypeptide 1
mm39_v1_chr10_+_129539079_129539079	0.8954797960457975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213331.2|Olfr804|ENSMUSG00000095401.3|olfactory receptor 804
mm39_v1_chr2_+_28095660_28095684	0.8499647255637554	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102879.4|Olfm1|ENSMUSG00000026833.19|olfactomedin 1	ENSMUST00000028177.11|Olfm1|ENSMUSG00000026833.19|olfactomedin 1
mm39_v1_chr11_+_77107006_77107113	0.8360697784457185	Hoxd11_Cdx1_Hoxc11	ENSMUST00000156488.8|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2	ENSMUST00000037912.12|Ssh2|ENSMUSG00000037926.16|slingshot protein phosphatase 2
mm39_v1_chrM_+_3906_3942	0.8244891182336576	Hoxd11_Cdx1_Hoxc11	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm39_v1_chr19_-_7319157_7319195	0.7651755435431243	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164205.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000165286.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000168324.2|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2	ENSMUST00000032557.15|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr3_-_64417263_64417263	0.6837010489959031	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177184.9|Vmn2r5|ENSMUSG00000068999.14|vomeronasal 2, receptor 5
mm39_v1_chr5_-_62923463_62923615	0.6806461251888908	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076623.8|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ENSMUST00000159470.3|Arap2|ENSMUSG00000037999.14|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm39_v1_chr10_+_129153986_129153986	0.6764963198993774	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215503.2|Olfr780|ENSMUSG00000049573.4|olfactory receptor 780
mm39_v1_chr12_+_33197692_33197715	0.6645503334454721	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077456.13|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1	ENSMUST00000110824.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr12_+_33197776_33197819	0.642626548159127	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125192.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1	ENSMUST00000136644.8|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr7_-_12468931_12468931	0.6019732729170036	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233304.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233373.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233874.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56	ENSMUST00000233902.2|Vmn2r56|ENSMUSG00000090762.3|vomeronasal 2, receptor 56
mm39_v1_chr17_-_36208265_36208333	0.5897888147672559	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148721.8|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene
mm39_v1_chr12_+_33197753_33197769	0.5822380717107011	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146040.9|Atxn7l1|ENSMUSG00000020564.18|ataxin 7-like 1
mm39_v1_chr2_-_18053595_18053634	0.5435255057210417	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142856.2|Skida1|ENSMUSG00000054074.10|SKI/DACH domain containing 1
mm39_v1_chr5_-_142892457_142892509	0.49387900357768627	Hoxd11_Cdx1_Hoxc11	ENSMUST00000167721.8|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000163829.2|Actb|ENSMUSG00000029580.15|actin, beta	ENSMUST00000100497.11|Actb|ENSMUSG00000029580.15|actin, beta
mm39_v1_chr11_+_29413734_29413888	0.4925384458385581	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155854.8|Ccdc88a|ENSMUSG00000032740.18|coiled coil domain containing 88A
mm39_v1_chr18_+_69726431_69726521	0.47541632558291097	Hoxd11_Cdx1_Hoxc11	ENSMUST00000201091.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000201037.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4	ENSMUST00000114977.5|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr7_-_12342715_12342715	0.4697654395889359	Hoxd11_Cdx1_Hoxc11	ENSMUST00000233892.2|Vmn2r53|ENSMUSG00000096002.3|vomeronasal 2, receptor 53
mm39_v1_chr2_-_160208977_160208993	0.4603128140144385	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099126.5|Mafb|ENSMUSG00000074622.5|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm39_v1_chrX_-_49108236_49108236	0.44586460547615403	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213556.3|Olfr1323|ENSMUSG00000050504.4|olfactory receptor 1323	ENSMUST00000213463.2|Olfr1323|ENSMUSG00000050504.4|olfactory receptor 1323
mm39_v1_chr6_-_124942457_124942505	0.44415575803639445	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112439.9|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr9_+_38374440_38374440	0.4353685934404149	Hoxd11_Cdx1_Hoxc11	ENSMUST00000216724.3|Olfr904|ENSMUSG00000094380.4|olfactory receptor 904
mm39_v1_chr18_+_69726654_69726678	0.4307387261117257	Hoxd11_Cdx1_Hoxc11	ENSMUST00000200921.4|Tcf4|ENSMUSG00000053477.19|transcription factor 4
mm39_v1_chr11_-_58614840_58614840	0.41306266657668417	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214728.2|Olfr318|ENSMUSG00000108265.3|olfactory receptor 318
mm39_v1_chr13_+_81031512_81031543	0.4080595937760419	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099356.10|Arrdc3|ENSMUSG00000074794.11|arrestin domain containing 3
mm39_v1_chr11_-_99134885_99134964	0.4029958417593803	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr8_+_120719177_120719265	0.36849559830302286	Hoxd11_Cdx1_Hoxc11	ENSMUST00000132583.8|Crispld2|ENSMUSG00000031825.17|cysteine-rich secretory protein LCCL domain containing 2	ENSMUST00000034282.16|Crispld2|ENSMUSG00000031825.17|cysteine-rich secretory protein LCCL domain containing 2
mm39_v1_chr6_-_124942366_124942421	0.3635264379264106	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129446.8|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A	ENSMUST00000032220.15|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chr19_+_26725589_26725932	0.35041963745343313	Hoxd11_Cdx1_Hoxc11	ENSMUST00000207812.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000175791.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000207118.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000209085.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000112637.10|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000207054.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208589.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000176475.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000176698.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000207832.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000177252.9|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208712.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208186.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208806.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	ENSMUST00000208027.2|Smarca2|ENSMUSG00000024921.18|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm39_v1_chr11_-_109188917_109188944	0.3452651642985386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106704.3|Rgs9|ENSMUSG00000020599.14|regulator of G-protein signaling 9
mm39_v1_chr19_-_13126896_13126896	0.34176230509488853	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213493.2|Olfr1459|ENSMUSG00000057503.7|olfactory receptor 1459
mm39_v1_chr11_-_110142565_110142602	0.3403242958891443	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.14|Abca6|ENSMUSG00000044749.14|ATP-binding cassette, sub-family A (ABC1), member 6
mm39_v1_chr15_+_8997480_8997495	0.33532262879975144	Hoxd11_Cdx1_Hoxc11	ENSMUST00000227191.3|Ranbp3l|ENSMUSG00000048424.19|RAN binding protein 3-like
mm39_v1_chr7_+_103379581_103379581	0.31985274133140607	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098193.4|Olfr628|ENSMUSG00000096516.4|olfactory receptor 628
mm39_v1_chr9_-_70410611_70410660	0.31961129786403203	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215848.2|Rnf111|ENSMUSG00000032217.14|ring finger 111	ENSMUST00000113595.2|Rnf111|ENSMUSG00000032217.14|ring finger 111	ENSMUST00000213647.2|Rnf111|ENSMUSG00000032217.14|ring finger 111
mm39_v1_chr6_-_97594498_97594558	0.3161758659641058	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113355.9|Frmd4b|ENSMUSG00000030064.17|FERM domain containing 4B
mm39_v1_chr7_-_19411866_19411877	0.30939965233096556	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142352.9|Apoc2|ENSMUSG00000002992.18|apolipoprotein C-II
mm39_v1_chr1_+_159351337_159351444	0.30937190873609666	Hoxd11_Cdx1_Hoxc11	ENSMUST00000192069.6|Tnr|ENSMUSG00000015829.14|tenascin R
mm39_v1_chr5_+_150119860_150119931	0.3092526797758354	Hoxd11_Cdx1_Hoxc11	ENSMUST00000202600.4|Fry|ENSMUSG00000056602.14|FRY microtubule binding protein
mm39_v1_chr11_+_115824108_115824108	0.29865701895609315	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140991.2|Sap30bp|ENSMUSG00000020755.10|SAP30 binding protein
mm39_v1_chr3_-_144466602_144466628	0.29770124026224515	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059091.6|Clca3a1|ENSMUSG00000056025.13|chloride channel accessory 3A1
mm39_v1_chr17_+_37689924_37689924	0.29702218343704484	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215518.2|Olfr105-ps|ENSMUSG00000094884.4|olfactory receptor 105, pseudogene
mm39_v1_chr16_+_65317389_65317434	0.286560407387943	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176330.8|Pou1f1|ENSMUSG00000004842.19|POU domain, class 1, transcription factor 1	ENSMUST00000004964.15|Pou1f1|ENSMUSG00000004842.19|POU domain, class 1, transcription factor 1	ENSMUST00000176038.8|Pou1f1|ENSMUSG00000004842.19|POU domain, class 1, transcription factor 1
mm39_v1_chr9_+_38164070_38164070	0.2845778165184068	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213129.2|Olfr143|ENSMUSG00000094778.4|olfactory receptor 143
mm39_v1_chr5_-_108017019_108017041	0.27430311058957185	Hoxd11_Cdx1_Hoxc11	ENSMUST00000128723.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5	ENSMUST00000124034.8|Evi5|ENSMUSG00000011831.17|ecotropic viral integration site 5
mm39_v1_chrX_-_48823936_48823936	0.27148575901884425	Hoxd11_Cdx1_Hoxc11	ENSMUST00000215373.3|Olfr1321|ENSMUSG00000067971.6|olfactory receptor 1321
mm39_v1_chr15_-_78739717_78739736	0.268812148708389	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044584.6|Lgals2|ENSMUSG00000043501.6|lectin, galactose-binding, soluble 2
mm39_v1_chr11_-_18968979_18968990	0.2616658388242975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr14_-_67106037_67106137	0.26111755703054146	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr3_-_88366351_88366408	0.2590596366697575	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165898.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000127436.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chr7_+_106737534_106737537	0.2567206627808271	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213367.3|Olfr716|ENSMUSG00000073896.6|olfactory receptor 716	ENSMUST00000214819.3|Olfr716|ENSMUSG00000073896.6|olfactory receptor 716	ENSMUST00000216871.3|Olfr716|ENSMUSG00000073896.6|olfactory receptor 716	ENSMUST00000215284.3|Olfr716|ENSMUSG00000073896.6|olfactory receptor 716	ENSMUST00000209942.2|Olfr716|ENSMUSG00000073896.6|olfactory receptor 716
mm39_v1_chr2_-_70885877_70885956	0.25657353284306306	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090849.6|Mettl8|ENSMUSG00000041975.18|methyltransferase like 8	ENSMUST00000100037.9|Mettl8|ENSMUSG00000041975.18|methyltransferase like 8	ENSMUST00000112186.9|Mettl8|ENSMUSG00000041975.18|methyltransferase like 8
mm39_v1_chr11_-_18968955_18968973	0.24998363397280687	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068264.14|Meis1|ENSMUSG00000020160.19|Meis homeobox 1	ENSMUST00000185131.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr11_-_103158190_103158298	0.24477972164324233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021324.3|Map3k14|ENSMUSG00000020941.8|mitogen-activated protein kinase kinase kinase 14
mm39_v1_chr3_-_144525255_144525255	0.24474437720569228	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029929.12|Clca3a2|ENSMUSG00000028262.14|chloride channel accessory 3A2
mm39_v1_chrX_-_104972150_104972189	0.24268816227201612	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101305.9|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr2_-_45002902_45003021	0.2413715200373896	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr10_-_116808514_116808514	0.2389261728852587	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092165.5|Gm10271|ENSMUSG00000069518.6|predicted gene 10271
mm39_v1_chr1_+_163875783_163875803	0.23647584709283032	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027874.6|Sele|ENSMUSG00000026582.7|selectin, endothelial cell
mm39_v1_chr2_+_88479038_88479038	0.23444293787242135	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120518.4|Olfr1192-ps1|ENSMUSG00000111590.3|olfactory receptor 1192, pseudogene 1
mm39_v1_chr2_-_32277773_32277809	0.23074960012619675	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050785.14|Lcn2|ENSMUSG00000026822.15|lipocalin 2
mm39_v1_chr10_-_12689345_12689359	0.22824910343382462	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217899.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr15_-_80989200_80989284	0.22463607903777838	Hoxd11_Cdx1_Hoxc11	ENSMUST00000109579.9|Mrtfa|ENSMUSG00000042292.19|myocardin related transcription factor A
mm39_v1_chr17_-_16046780_16046853	0.22347663722123223	Hoxd11_Cdx1_Hoxc11	ENSMUST00000232638.2|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B	ENSMUST00000170578.3|Rgmb|ENSMUSG00000048027.10|repulsive guidance molecule family member B
mm39_v1_chr7_+_44545501_44545676	0.2232361982744548	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071207.14|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000209132.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000207069.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000209039.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000207939.3|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000207485.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein	ENSMUST00000208179.2|Fuz|ENSMUSG00000011658.17|fuzzy planar cell polarity protein
mm39_v1_chr2_-_27354006_27354128	0.22175417496607633	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164296.8|Brd3|ENSMUSG00000026918.17|bromodomain containing 3
mm39_v1_chr2_+_48839505_48839629	0.22064635224755896	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112745.8|Mbd5|ENSMUSG00000036792.13|methyl-CpG binding domain protein 5	ENSMUST00000112754.8|Mbd5|ENSMUSG00000036792.13|methyl-CpG binding domain protein 5
mm39_v1_chr17_-_36220924_36220971	0.22047956833545942	Hoxd11_Cdx1_Hoxc11	ENSMUST00000141662.8|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000056034.13|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000077494.13|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000149277.8|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1	ENSMUST00000061052.12|Atat1|ENSMUSG00000024426.18|alpha tubulin acetyltransferase 1
mm39_v1_chr2_+_145627900_145628073	0.21774170850934335	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110005.8|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2	ENSMUST00000094480.11|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2
mm39_v1_chr15_+_81820954_81821038	0.21696686213895253	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038757.8|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding	ENSMUST00000230633.2|Csdc2|ENSMUSG00000042109.9|cold shock domain containing C2, RNA binding
mm39_v1_chr19_+_13208692_13208692	0.21509088059008	Hoxd11_Cdx1_Hoxc11	ENSMUST00000207246.4|Olfr1463|ENSMUSG00000096365.5|olfactory receptor 1463
mm39_v1_chr14_-_47426863_47426877	0.21439545270862964	Hoxd11_Cdx1_Hoxc11	ENSMUST00000089959.7|Gch1|ENSMUSG00000037580.11|GTP cyclohydrolase 1
mm39_v1_chr11_-_97591150_97591323	0.21264318247612357	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018681.14|Pcgf2|ENSMUSG00000018537.17|polycomb group ring finger 2
mm39_v1_chr2_-_34261121_34261265	0.21171497159752103	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127353.3|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3	ENSMUST00000141653.3|Pbx3|ENSMUSG00000038718.16|pre B cell leukemia homeobox 3
mm39_v1_chr13_-_23302396_23302396	0.2081348845780692	Hoxd11_Cdx1_Hoxc11	ENSMUST00000227110.2|Vmn1r217|ENSMUSG00000115791.2|vomeronasal 1 receptor 217
mm39_v1_chr12_-_111933328_111933460	0.20721455631075267	Hoxd11_Cdx1_Hoxc11	ENSMUST00000222874.2|Atp5mpl|ENSMUSG00000021290.7|ATP synthase membrane subunit 6.8PL	ENSMUST00000223191.2|Atp5mpl|ENSMUSG00000021290.7|ATP synthase membrane subunit 6.8PL	ENSMUST00000021719.7|Atp5mpl|ENSMUSG00000021290.7|ATP synthase membrane subunit 6.8PL
mm39_v1_chr2_-_26012751_26012850	0.1910607521622488	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140993.2|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	ENSMUST00000028300.6|Nacc2|ENSMUSG00000026932.15|nucleus accumbens associated 2, BEN and BTB (POZ) domain containing
mm39_v1_chr3_-_88366159_88366205	0.1897356147648754	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147200.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	ENSMUST00000169222.8|Sema4a|ENSMUSG00000028064.18|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm39_v1_chrX_+_159551009_159551114	0.18805519800198495	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr2_-_45001141_45001186	0.18763460805832458	Hoxd11_Cdx1_Hoxc11	ENSMUST00000201969.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000201623.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr14_-_31807552_31807686	0.1828324511784822	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022461.11|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3	ENSMUST00000067955.12|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3	ENSMUST00000124303.9|Dph3|ENSMUSG00000021905.15|diphthamine biosynthesis 3
mm39_v1_chr7_+_43339842_43339842	0.18219248791180212	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056329.7|Klk14|ENSMUSG00000044737.7|kallikrein related-peptidase 14
mm39_v1_chr9_+_21746785_21746806	0.180665357062202	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058777.8|Angptl8|ENSMUSG00000047822.9|angiopoietin-like 8
mm39_v1_chr5_+_63969706_63969891	0.17943317557276506	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081747.8|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene	ENSMUST00000196575.5|0610040J01Rik|ENSMUSG00000060512.8|RIKEN cDNA 0610040J01 gene
mm39_v1_chr2_-_45007407_45007421	0.17584920367121717	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176438.9|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr7_-_136916123_136916174	0.17565845187026619	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106118.10|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000168203.2|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000169486.9|Ebf3|ENSMUSG00000010476.15|early B cell factor 3	ENSMUST00000033378.13|Ebf3|ENSMUSG00000010476.15|early B cell factor 3
mm39_v1_chr4_+_62204678_62204754	0.16940392485822367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084530.9|Slc31a2|ENSMUSG00000066152.12|solute carrier family 31, member 2
mm39_v1_chr7_-_44711771_44711859	0.16674272613052551	Hoxd11_Cdx1_Hoxc11	ENSMUST00000210101.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	ENSMUST00000209219.2|Prrg2|ENSMUSG00000007837.12|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm39_v1_chr11_-_18968714_18968828	0.16431363206451033	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177417.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr15_+_36179676_36179849	0.1623398716653294	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171205.3|Spag1|ENSMUSG00000037617.13|sperm associated antigen 1
mm39_v1_chr1_-_130643471_130643589	0.15843121182323588	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066863.13|Pfkfb2|ENSMUSG00000026409.15|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	ENSMUST00000169659.8|Pfkfb2|ENSMUSG00000026409.15|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm39_v1_chr7_+_84178162_84178189	0.1553952790734425	Hoxd11_Cdx1_Hoxc11	ENSMUST00000180387.3|Gm2115|ENSMUSG00000097789.3|predicted gene 2115
mm39_v1_chr11_-_77498636_77498686	0.1535181489959115	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058496.8|Taok1|ENSMUSG00000017291.14|TAO kinase 1
mm39_v1_chr5_+_137639538_137639699	0.1522549770667978	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177466.8|Sap25|ENSMUSG00000079165.11|sin3 associated polypeptide	ENSMUST00000166099.3|Sap25|ENSMUSG00000079165.11|sin3 associated polypeptide
mm39_v1_chr10_-_40018243_40018256	0.1474045607876553	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092566.8|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10	ENSMUST00000213488.2|Slc16a10|ENSMUSG00000019838.12|solute carrier family 16 (monocarboxylic acid transporters), member 10
mm39_v1_chr12_-_32000534_32000558	0.14586994255505414	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172314.9|Hbp1|ENSMUSG00000002996.18|high mobility group box transcription factor 1
mm39_v1_chr2_+_22512195_22512217	0.14391819244320206	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028123.4|Gad2|ENSMUSG00000026787.4|glutamic acid decarboxylase 2
mm39_v1_chr17_-_37523969_37524009	0.14257594093177495	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060728.7|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95	ENSMUST00000216318.2|Olfr95|ENSMUSG00000049561.10|olfactory receptor 95
mm39_v1_chr9_-_44710480_44710604	0.13898900747408158	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214833.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213972.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000214431.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000213363.2|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000114705.9|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25	ENSMUST00000002100.8|Tmem25|ENSMUSG00000002032.18|transmembrane protein 25
mm39_v1_chr6_+_8259288_8259312	0.13776828690703552	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159335.8|Umad1|ENSMUSG00000089862.9|UMAP1-MVP12 associated (UMA) domain containing 1
mm39_v1_chr7_+_126248471_126248517	0.13565789537088888	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032956.10|Sgf29|ENSMUSG00000030714.15|SAGA complex associated factor 29	ENSMUST00000126570.8|Sgf29|ENSMUSG00000030714.15|SAGA complex associated factor 29
mm39_v1_chrX_+_105964224_105964239	0.1349020543754118	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060576.8|Lpar4|ENSMUSG00000049929.8|lysophosphatidic acid receptor 4
mm39_v1_chr16_-_21814289_21814413	0.13409994345443793	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060673.8|Liph|ENSMUSG00000044626.14|lipase, member H
mm39_v1_chr6_-_122317484_122317520	0.13343495865461055	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112600.9|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr17_+_3447465_3447482	0.13328589910777666	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072156.7|Tiam2|ENSMUSG00000023800.16|T cell lymphoma invasion and metastasis 2
mm39_v1_chr10_+_19232281_19232312	0.13261242411945362	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053225.7|Olig3|ENSMUSG00000045591.7|oligodendrocyte transcription factor 3
mm39_v1_chr14_+_20724378_20724497	0.12838696403532213	Hoxd11_Cdx1_Hoxc11	ENSMUST00000224492.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000223751.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000225108.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000224754.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr16_+_45044678_45044710	0.12580343987619155	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102802.10|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated	ENSMUST00000063654.6|Btla|ENSMUSG00000052013.16|B and T lymphocyte associated
mm39_v1_chr5_-_73413888_73413979	0.12161207779191062	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101127.12|Fryl|ENSMUSG00000070733.14|FRY like transcription coactivator
mm39_v1_chr13_-_93636224_93636333	0.12023453208128225	Hoxd11_Cdx1_Hoxc11	ENSMUST00000220513.2|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein	ENSMUST00000065537.9|Jmy|ENSMUSG00000021690.11|junction-mediating and regulatory protein
mm39_v1_chr14_+_60940394_60940420	0.11959346475923967	Hoxd11_Cdx1_Hoxc11	ENSMUST00000162131.9|Spata13|ENSMUSG00000021990.17|spermatogenesis associated 13
mm39_v1_chr10_-_12490424_12490575	0.11855336972909368	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217994.2|Utrn|ENSMUSG00000019820.12|utrophin
mm39_v1_chr17_+_35235552_35235614	0.11480516658595105	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007245.8|Vwa7|ENSMUSG00000007030.9|von Willebrand factor A domain containing 7	ENSMUST00000172499.2|Vwa7|ENSMUSG00000007030.9|von Willebrand factor A domain containing 7
mm39_v1_chr6_-_124942170_124942258	0.11254027864589203	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148485.2|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A	ENSMUST00000129976.8|Cops7a|ENSMUSG00000030127.16|COP9 signalosome subunit 7A
mm39_v1_chrY_-_7169293_7169293	0.11189554241245729	Hoxd11_Cdx1_Hoxc11	ENSMUST00000189201.2|Gm21244|ENSMUSG00000094484.3|predicted gene, 21244
mm39_v1_chr3_+_5815863_5815866	0.11167287491141291	Hoxd11_Cdx1_Hoxc11	ENSMUST00000192045.2|Gm8797|ENSMUSG00000103034.2|predicted pseudogene 8797
mm39_v1_chr9_+_45230370_45230398	0.11112807700619082	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034597.8|Tmprss13|ENSMUSG00000037129.8|transmembrane protease, serine 13
mm39_v1_chr18_+_65054188_65054219	0.11073659370312168	Hoxd11_Cdx1_Hoxc11	ENSMUST00000236898.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like	ENSMUST00000237410.2|Nedd4l|ENSMUSG00000024589.19|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm39_v1_chr10_-_42459624_42459635	0.10892815657619709	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019938.11|Nr2e1|ENSMUSG00000019803.12|nuclear receptor subfamily 2, group E, member 1
mm39_v1_chr2_+_152511381_152511459	0.10828611825577665	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125366.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000109825.8|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000089059.9|H13|ENSMUSG00000019188.17|histocompatibility 13	ENSMUST00000079247.4|H13|ENSMUSG00000019188.17|histocompatibility 13
mm39_v1_chr3_+_63988968_63988968	0.10797700542712316	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029406.6|Vmn2r1|ENSMUSG00000027824.6|vomeronasal 2, receptor 1
mm39_v1_chr7_-_12829100_12829100	0.10707706413717326	Hoxd11_Cdx1_Hoxc11	ENSMUST00000209822.3|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85	ENSMUST00000235753.2|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85
mm39_v1_chr5_-_28672091_28672254	0.10665445534319326	Hoxd11_Cdx1_Hoxc11	ENSMUST00000002708.5|Shh|ENSMUSG00000002633.5|sonic hedgehog
mm39_v1_chr10_+_129184719_129184719	0.10644018061618743	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213970.2|Olfr782|ENSMUSG00000095075.3|olfactory receptor 782
mm39_v1_chr10_-_30531768_30531807	0.10605393858863134	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092610.12|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr9_+_121780054_121780110	0.10565782172472953	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043011.9|Gask1a|ENSMUSG00000038233.11|golgi associated kinase 1A	ENSMUST00000214536.3|Gask1a|ENSMUSG00000038233.11|golgi associated kinase 1A	ENSMUST00000215990.3|Gask1a|ENSMUSG00000038233.11|golgi associated kinase 1A
mm39_v1_chr2_+_155453103_155453136	0.1052620337912654	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092995.6|Myh7b|ENSMUSG00000074652.4|myosin, heavy chain 7B, cardiac muscle, beta
mm39_v1_chr17_+_74111823_74111836	0.10484847137739933	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024860.9|Ehd3|ENSMUSG00000024065.9|EH-domain containing 3
mm39_v1_chr5_+_4073343_4073415	0.10442306438823597	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238634.2|Akap9|ENSMUSG00000040407.19|A kinase (PRKA) anchor protein (yotiao) 9
mm39_v1_chr2_-_88058678_88058678	0.10419191045520766	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214386.2|Olfr1170|ENSMUSG00000075133.3|olfactory receptor 1170
mm39_v1_chr7_-_34012956_34012993	0.10402667769350585	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108074.8|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
mm39_v1_chr2_+_29236815_29236854	0.0992756596753061	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028139.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27	ENSMUST00000113830.11|Med27|ENSMUSG00000026799.16|mediator complex subunit 27
mm39_v1_chr4_+_35152056_35152056	0.09859323295409343	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058595.7|Ifnk|ENSMUSG00000042993.7|interferon kappa
mm39_v1_chr19_+_38252984_38253025	0.09830508193054562	Hoxd11_Cdx1_Hoxc11	ENSMUST00000198518.5|Lgi1|ENSMUSG00000067242.12|leucine-rich repeat LGI family, member 1	ENSMUST00000199812.5|Lgi1|ENSMUSG00000067242.12|leucine-rich repeat LGI family, member 1
mm39_v1_chr7_-_34012934_34012953	0.09821493155204092	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206399.2|Garre1|ENSMUSG00000066571.14|granule associated Rac and RHOG effector 1
mm39_v1_chr2_-_119039247_119039283	0.09774757685792086	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038439.4|Dnajc17|ENSMUSG00000034278.4|DnaJ heat shock protein family (Hsp40) member C17
mm39_v1_chr9_+_35819708_35819738	0.09707121002279288	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176049.2|Pate13|ENSMUSG00000078934.5|prostate and testis expressed 13	ENSMUST00000176153.2|Pate13|ENSMUSG00000078934.5|prostate and testis expressed 13
mm39_v1_chr7_+_141276575_141276591	0.09554420684510619	Hoxd11_Cdx1_Hoxc11	ENSMUST00000185406.8|Muc2|ENSMUSG00000025515.17|mucin 2
mm39_v1_chr9_-_9239056_9239106	0.09466842458965471	Hoxd11_Cdx1_Hoxc11	ENSMUST00000093893.12|Arhgap42|ENSMUSG00000050730.18|Rho GTPase activating protein 42
mm39_v1_chr2_-_32976378_32976452	0.09349726415629918	Hoxd11_Cdx1_Hoxc11	ENSMUST00000049618.9|Garnl3|ENSMUSG00000038860.16|GTPase activating RANGAP domain-like 3
mm39_v1_chr2_+_87696836_87696836	0.09341970973080317	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213308.3|Olfr1152|ENSMUSG00000045225.5|olfactory receptor 1152
mm39_v1_chr7_-_109215754_109215823	0.0918271788326767	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084738.5|Denn2b|ENSMUSG00000031024.14|DENN domain containing 2B
mm39_v1_chr6_-_144155197_144155294	0.09088300960149294	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038815.14|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000111749.8|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5	ENSMUST00000170367.9|Sox5|ENSMUSG00000041540.17|SRY (sex determining region Y)-box 5
mm39_v1_chr16_-_32698091_32698136	0.0873181111680597	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119810.2|Rubcn|ENSMUSG00000035629.20|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein
mm39_v1_chr9_-_101076198_101076278	0.08706443821474778	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066773.9|Ppp2r3a|ENSMUSG00000043154.16|protein phosphatase 2, regulatory subunit B'', alpha
mm39_v1_chr17_+_28059036_28059094	0.0865430508985769	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071006.9|Snrpc|ENSMUSG00000024217.11|U1 small nuclear ribonucleoprotein C
mm39_v1_chr19_-_7319211_7319228	0.08590292558280531	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171393.8|Mark2|ENSMUSG00000024969.16|MAP/microtubule affinity regulating kinase 2
mm39_v1_chr5_+_43672856_43672881	0.08474706846140316	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076939.10|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr3_+_66893031_66893073	0.08402227480004833	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046542.13|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1	ENSMUST00000162693.8|Rsrc1|ENSMUSG00000034544.18|arginine/serine-rich coiled-coil 1
mm39_v1_chr5_+_128677863_128677912	0.08375851765727581	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117102.4|Fzd10|ENSMUSG00000081683.6|frizzled class receptor 10
mm39_v1_chr7_-_45109262_45109312	0.08319749269070405	Hoxd11_Cdx1_Hoxc11	ENSMUST00000094434.13|Ftl1|ENSMUSG00000050708.17|ferritin light polypeptide 1
mm39_v1_chr10_-_33920300_33920315	0.08257528739706149	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048052.7|Calhm4|ENSMUSG00000039508.7|calcium homeostasis modulator family member 4
mm39_v1_chr6_+_90179768_90179768	0.08183366090626355	Hoxd11_Cdx1_Hoxc11	ENSMUST00000078371.6|V1ra8|ENSMUSG00000062546.6|vomeronasal 1 receptor, A8
mm39_v1_chr19_+_42034231_42034336	0.08055781085112816	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172244.8|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1	ENSMUST00000081714.5|Hoga1|ENSMUSG00000025176.15|4-hydroxy-2-oxoglutarate aldolase 1
mm39_v1_chr10_+_116137277_116137333	0.07979761982837066	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr3_-_126792056_126792112	0.07950681125992556	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044443.15|Ank2|ENSMUSG00000032826.20|ankyrin 2, brain
mm39_v1_chr1_-_179572765_179572836	0.07921975905637367	Hoxd11_Cdx1_Hoxc11	ENSMUST00000211943.3|Kif28|ENSMUSG00000087236.4|kinesin family member 28	ENSMUST00000131716.4|Kif28|ENSMUSG00000087236.4|kinesin family member 28	ENSMUST00000221136.2|Kif28|ENSMUSG00000087236.4|kinesin family member 28
mm39_v1_chr14_-_36832044_36832063	0.07844731744496272	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179488.3|2610528A11Rik|ENSMUSG00000096001.3|RIKEN cDNA 2610528A11 gene
mm39_v1_chr6_-_87958611_87958626	0.07811165551002552	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056403.7|H1f10|ENSMUSG00000044927.7|H1.10 linker histone
mm39_v1_chr3_+_84573499_84573566	0.0728061166537237	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107682.2|Tmem154|ENSMUSG00000056498.14|transmembrane protein 154
mm39_v1_chr6_-_70412460_70412492	0.07256509418396288	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103394.2|Igkv6-14|ENSMUSG00000096844.2|immunoglobulin kappa variable 6-14
mm39_v1_chr15_-_41733099_41733123	0.0718713622418942	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054742.7|Abra|ENSMUSG00000042895.7|actin-binding Rho activating protein
mm39_v1_chr16_+_38405718_38405870	0.06979682668427832	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165631.2|Tmem39a|ENSMUSG00000002845.15|transmembrane protein 39a
mm39_v1_chr7_-_29605504_29605562	0.06788921037412471	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053521.15|Zfp27|ENSMUSG00000062040.15|zinc finger protein 27
mm39_v1_chr7_+_103684652_103684652	0.0664861091708026	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213214.2|Olfr641|ENSMUSG00000073932.3|olfactory receptor 641
mm39_v1_chr6_-_52211882_52211940	0.06580789936277806	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125581.2|Hoxa10|ENSMUSG00000000938.12|homeobox A10
mm39_v1_chr10_+_129306867_129306867	0.0652225840823271	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213222.2|Olfr788|ENSMUSG00000049217.5|olfactory receptor 788
mm39_v1_chr17_+_71326510_71326517	0.06463833274637794	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073211.13|Myom1|ENSMUSG00000024049.16|myomesin 1	ENSMUST00000024847.14|Myom1|ENSMUSG00000024049.16|myomesin 1
mm39_v1_chr5_-_123804745_123804758	0.06451532313117711	Hoxd11_Cdx1_Hoxc11	ENSMUST00000149410.2|Clip1|ENSMUSG00000049550.18|CAP-GLY domain containing linker protein 1
mm39_v1_chr4_+_116578117_116578201	0.06375348111055747	Hoxd11_Cdx1_Hoxc11	ENSMUST00000045542.13|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2	ENSMUST00000106459.8|Tesk2|ENSMUSG00000033985.18|testis-specific kinase 2
mm39_v1_chr2_+_113235475_113235502	0.06349602036070631	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238883.2|Fmn1|ENSMUSG00000044042.20|formin 1
mm39_v1_chrX_-_7185424_7185527	0.06318104499037941	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115746.8|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr2_-_87881473_87881473	0.061207753302128375	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183862.3|Olfr1162|ENSMUSG00000075139.4|olfactory receptor 1162
mm39_v1_chr6_-_12749192_12749252	0.060548816248751115	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172356.8|Thsd7a|ENSMUSG00000032625.15|thrombospondin, type I, domain containing 7A
mm39_v1_chr7_-_127048280_127048338	0.06004390700140271	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053392.11|Zfp689|ENSMUSG00000048921.12|zinc finger protein 689
mm39_v1_chr5_-_86521273_86521285	0.05923311481718582	Hoxd11_Cdx1_Hoxc11	ENSMUST00000031175.12|Tmprss11d|ENSMUSG00000061259.12|transmembrane protease, serine 11d
mm39_v1_chr9_+_110948492_110948516	0.05900589706288011	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217341.3|Lrrfip2|ENSMUSG00000032497.20|leucine rich repeat (in FLII) interacting protein 2
mm39_v1_chr16_+_42727926_42728047	0.05896307738595817	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151244.8|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20	ENSMUST00000114694.9|Zbtb20|ENSMUSG00000022708.17|zinc finger and BTB domain containing 20
mm39_v1_chr8_+_69723732_69723803	0.05883097504726235	Hoxd11_Cdx1_Hoxc11	ENSMUST00000212549.2|D130040H23Rik|ENSMUSG00000079038.4|RIKEN cDNA D130040H23 gene
mm39_v1_chr6_+_79995860_79995929	0.05811111567612413	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147663.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000128718.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000126005.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4	ENSMUST00000133918.8|Lrrtm4|ENSMUSG00000052581.14|leucine rich repeat transmembrane neuronal 4
mm39_v1_chr6_-_122317457_122317471	0.057797376343837824	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160843.8|Phc1|ENSMUSG00000040669.15|polyhomeotic 1
mm39_v1_chr14_+_74878280_74878328	0.053963788755534904	Hoxd11_Cdx1_Hoxc11	ENSMUST00000036653.5|Htr2a|ENSMUSG00000034997.6|5-hydroxytryptamine (serotonin) receptor 2A
mm39_v1_chr11_-_79394904_79394915	0.0537425230316294	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164465.3|Omg|ENSMUSG00000049612.11|oligodendrocyte myelin glycoprotein
mm39_v1_chrX_-_7185529_7185624	0.05141261580909079	Hoxd11_Cdx1_Hoxc11	ENSMUST00000128319.2|Clcn5|ENSMUSG00000004317.15|chloride channel, voltage-sensitive 5
mm39_v1_chr9_-_42035560_42035631	0.050994415961292616	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060989.9|Sorl1|ENSMUSG00000049313.9|sortilin-related receptor, LDLR class A repeats-containing
mm39_v1_chr11_+_76563281_76563296	0.050942910079702905	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056184.2|Bhlha9|ENSMUSG00000044243.4|basic helix-loop-helix family, member a9
mm39_v1_chr11_-_88608958_88609022	0.05011948386786927	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107908.2|Msi2|ENSMUSG00000069769.14|musashi RNA-binding protein 2
mm39_v1_chr6_-_116650751_116650913	0.04945286947770159	Hoxd11_Cdx1_Hoxc11	ENSMUST00000204576.2|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4	ENSMUST00000203029.3|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4	ENSMUST00000035842.7|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4
mm39_v1_chr9_+_56326089_56326131	0.04852998590641656	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213242.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000214771.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000217518.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A	ENSMUST00000214869.2|Hmg20a|ENSMUSG00000032329.5|high mobility group 20A
mm39_v1_chr14_+_26616514_26616584	0.04811155799238723	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238987.2|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14	ENSMUST00000239004.2|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14	ENSMUST00000165929.4|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14	ENSMUST00000090337.12|Asb14|ENSMUSG00000021898.17|ankyrin repeat and SOCS box-containing 14
mm39_v1_chr2_-_85675827_85675827	0.04618937168660735	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213515.2|Olfr1019|ENSMUSG00000075208.7|olfactory receptor 1019
mm39_v1_chr17_-_57535003_57535136	0.04444905740060385	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177046.2|C3|ENSMUSG00000024164.16|complement component 3	ENSMUST00000024988.15|C3|ENSMUSG00000024164.16|complement component 3
mm39_v1_chr10_+_119828821_119828865	0.04422366209401187	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105261.9|Grip1|ENSMUSG00000034813.19|glutamate receptor interacting protein 1
mm39_v1_chr15_+_76152276_76152294	0.0397458942133365	Hoxd11_Cdx1_Hoxc11	ENSMUST00000074173.4|Spatc1|ENSMUSG00000049653.6|spermatogenesis and centriole associated 1
mm39_v1_chr8_-_25528972_25528986	0.03954795105683531	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084031.6|Htra4|ENSMUSG00000037406.8|HtrA serine peptidase 4
mm39_v1_chr14_+_20724366_20724376	0.038551213124200706	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048657.10|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr17_-_36207965_36208033	0.037329137216470805	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150056.2|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene	ENSMUST00000156817.2|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene	ENSMUST00000146451.8|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene	ENSMUST00000148482.8|2310061I04Rik|ENSMUSG00000050705.16|RIKEN cDNA 2310061I04 gene
mm39_v1_chr6_-_116650728_116650750	0.03674393890402249	Hoxd11_Cdx1_Hoxc11	ENSMUST00000204203.2|Rassf4|ENSMUSG00000042129.9|Ras association (RalGDS/AF-6) domain family member 4
mm39_v1_chr4_+_134042423_134042437	0.03604747173874906	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105875.8|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63	ENSMUST00000030638.7|Trim63|ENSMUSG00000028834.14|tripartite motif-containing 63
mm39_v1_chrX_+_20230720_20230864	0.035165364661506264	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033372.13|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog	ENSMUST00000115391.8|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog	ENSMUST00000115387.8|Rp2|ENSMUSG00000060090.17|retinitis pigmentosa 2 homolog
mm39_v1_chr6_-_52203146_52203176	0.0346385198851216	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114425.3|Hoxa9|ENSMUSG00000038227.16|homeobox A9
mm39_v1_chr4_-_81360993_81361073	0.03181825802241554	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107262.8|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component	ENSMUST00000102830.10|Mpdz|ENSMUSG00000028402.19|multiple PDZ domain crumbs cell polarity complex component
mm39_v1_chr1_-_37535170_37535187	0.03103415179101991	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148047.2|Mgat4a|ENSMUSG00000026110.16|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm39_v1_chr2_-_115895202_115895231	0.030381038224496282	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110906.9|Meis2|ENSMUSG00000027210.21|Meis homeobox 2
mm39_v1_chr6_-_70435020_70435039	0.030266826396426687	Hoxd11_Cdx1_Hoxc11	ENSMUST00000198184.2|Igkv6-13|ENSMUSG00000076594.3|immunoglobulin kappa variable 6-13
mm39_v1_chr7_-_135130374_135130389	0.030159900784113364	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053716.8|Clrn3|ENSMUSG00000050866.8|clarin 3
mm39_v1_chrX_+_165127688_165127766	0.02944322667836425	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112223.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b	ENSMUST00000112224.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b	ENSMUST00000112229.9|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b	ENSMUST00000112228.8|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b	ENSMUST00000112227.9|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b	ENSMUST00000112226.3|Gpm6b|ENSMUSG00000031342.18|glycoprotein m6b
mm39_v1_chr4_+_95467653_95467665	0.028236099687326252	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043335.11|Fggy|ENSMUSG00000028573.19|FGGY carbohydrate kinase domain containing
mm39_v1_chr11_+_100902572_100902647	0.026788791573215735	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092663.4|Atp6v0a1|ENSMUSG00000019302.17|ATPase, H+ transporting, lysosomal V0 subunit A1
mm39_v1_chr3_+_3699205_3699221	0.026757519071554773	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108394.3|Hnf4g|ENSMUSG00000017688.15|hepatocyte nuclear factor 4, gamma
mm39_v1_chr19_+_44481901_44481920	0.025756529132024947	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041163.5|Wnt8b|ENSMUSG00000036961.6|wingless-type MMTV integration site family, member 8B
mm39_v1_chr4_-_76262464_76262486	0.02498204143438645	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050757.16|Ptprd|ENSMUSG00000028399.19|protein tyrosine phosphatase, receptor type, D
mm39_v1_chr8_-_106670014_106670039	0.02340636621137975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038896.8|Lcat|ENSMUSG00000035237.8|lecithin cholesterol acyltransferase
mm39_v1_chr19_-_29721012_29721012	0.02302984138805602	Hoxd11_Cdx1_Hoxc11	ENSMUST00000175764.9|9930021J03Rik|ENSMUSG00000046138.16|RIKEN cDNA 9930021J03 gene
mm39_v1_chr5_+_66833434_66833600	0.022509275531754788	Hoxd11_Cdx1_Hoxc11	ENSMUST00000031131.11|Uchl1|ENSMUSG00000029223.13|ubiquitin carboxy-terminal hydrolase L1
mm39_v1_chr10_-_30531832_30531863	0.02028735407926393	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217138.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000217644.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7	ENSMUST00000216172.2|Ncoa7|ENSMUSG00000039697.17|nuclear receptor coactivator 7
mm39_v1_chr7_+_89780785_89780853	0.019949003500867805	Hoxd11_Cdx1_Hoxc11	ENSMUST00000208684.2|Picalm|ENSMUSG00000039361.12|phosphatidylinositol binding clathrin assembly protein
mm39_v1_chr1_+_58484310_58484467	0.019945754695191126	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087521.13|Nif3l1|ENSMUSG00000026036.18|Ngg1 interacting factor 3-like 1 (S. pombe)	ENSMUST00000114337.8|Nif3l1|ENSMUSG00000026036.18|Ngg1 interacting factor 3-like 1 (S. pombe)
mm39_v1_chr7_+_43079512_43079538	0.019555755288907364	Hoxd11_Cdx1_Hoxc11	ENSMUST00000004732.7|Lim2|ENSMUSG00000118560.2|lens intrinsic membrane protein 2
mm39_v1_chr7_-_140856642_140856704	0.018853430504330623	Hoxd11_Cdx1_Hoxc11	ENSMUST00000080654.7|Cdhr5|ENSMUSG00000025497.16|cadherin-related family member 5	ENSMUST00000167263.9|Cdhr5|ENSMUSG00000025497.16|cadherin-related family member 5
mm39_v1_chrX_+_81992467_81992521	0.018771853271478935	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114000.8|Dmd|ENSMUSG00000045103.20|dystrophin, muscular dystrophy
mm39_v1_chr2_+_111355548_111355548	0.018269498208157608	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr19_-_45800730_45800746	0.01718275054991332	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086993.11|Kcnip2|ENSMUSG00000025221.17|Kv channel-interacting protein 2
mm39_v1_chr18_-_32170012_32170072	0.016419399128237845	Hoxd11_Cdx1_Hoxc11	ENSMUST00000134663.2|Myo7b|ENSMUSG00000024388.12|myosin VIIB
mm39_v1_chr7_-_85974838_85974838	0.015513493771268018	Hoxd11_Cdx1_Hoxc11	ENSMUST00000214977.2|Olfr308|ENSMUSG00000054498.7|olfactory receptor 308
mm39_v1_chr7_-_141015240_141015310	0.015312732186403954	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138865.8|Slc25a22|ENSMUSG00000019082.19|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm39_v1_chr15_-_42540363_42540376	0.014844758998404787	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022921.7|Angpt1|ENSMUSG00000022309.10|angiopoietin 1
mm39_v1_chr11_+_82802079_82802120	0.014489467600896774	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018989.14|Unc45b|ENSMUSG00000018845.15|unc-45 myosin chaperone B	ENSMUST00000164945.3|Unc45b|ENSMUSG00000018845.15|unc-45 myosin chaperone B
mm39_v1_chr15_-_101336669_101336685	0.014455099400698501	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081945.5|Krt87|ENSMUSG00000047641.9|keratin 87
mm39_v1_chr3_+_64856617_64856641	0.01440793879262937	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238901.2|Kcnab1|ENSMUSG00000027827.18|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm39_v1_chr18_+_4994600_4994623	0.013917620706717631	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140448.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chr10_+_112001581_112001581	0.013563002386028915	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170013.2|Caps2|ENSMUSG00000035694.16|calcyphosphine 2
mm39_v1_chr14_+_28233301_28233362	0.013286672193014243	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.2|Wnt5a|ENSMUSG00000021994.16|wingless-type MMTV integration site family, member 5A
mm39_v1_chr2_+_119039456_119039517	0.01221009116979757	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102519.5|Zfyve19|ENSMUSG00000068580.12|zinc finger, FYVE domain containing 19
mm39_v1_chr1_+_6805048_6805100	0.011920441639281881	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139838.8|St18|ENSMUSG00000033740.18|suppression of tumorigenicity 18
mm39_v1_chrX_+_84913911_84913960	0.011406624285011617	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113976.2|Tasl|ENSMUSG00000025058.5|TLR adaptor interacting with endolysosomal SLC15A4
mm39_v1_chr5_-_101812862_101812862	0.011085001398865783	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044125.11|Nkx6-1|ENSMUSG00000035187.11|NK6 homeobox 1
mm39_v1_chr10_+_70276604_70276768	0.010788444909639355	Hoxd11_Cdx1_Hoxc11	ENSMUST00000173042.9|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C	ENSMUST00000062883.7|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C
mm39_v1_chr3_-_144638284_144638297	0.010467858974717931	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098549.4|Clca4b|ENSMUSG00000074195.4|chloride channel accessory 4B
mm39_v1_chr7_-_30750856_30750911	0.010410983747201884	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073892.6|Fxyd7|ENSMUSG00000036578.8|FXYD domain-containing ion transport regulator 7
mm39_v1_chr2_-_84652890_84652996	0.010296173557067414	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028471.6|Smtnl1|ENSMUSG00000027077.8|smoothelin-like 1
mm39_v1_chr16_+_11223512_11223577	0.010141976598781317	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096273.9|Snx29|ENSMUSG00000071669.15|sorting nexin 29
mm39_v1_chr2_+_163348728_163348780	0.010118170000131098	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143911.8|Hnf4a|ENSMUSG00000017950.17|hepatic nuclear factor 4, alpha
mm39_v1_chr13_+_49736219_49736258	0.010041845599480381	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065494.8|Omd|ENSMUSG00000048368.10|osteomodulin
mm39_v1_chr7_-_103799746_103799768	0.009975305113186731	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059121.5|Ubqlnl|ENSMUSG00000051437.5|ubiquilin-like
mm39_v1_chr10_+_123099945_123099981	0.009799331708955344	Hoxd11_Cdx1_Hoxc11	ENSMUST00000238972.2|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2	ENSMUST00000050756.8|Tafa2|ENSMUSG00000044071.10|TAFA chemokine like family member 2
mm39_v1_chrY_+_9781804_9781804	0.009316235365773048	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179829.3|Gm20821|ENSMUSG00000094556.3|predicted gene, 20821
mm39_v1_chr4_-_34756222_34756269	0.009214374807453705	Hoxd11_Cdx1_Hoxc11	ENSMUST00000095129.3|Gm136|ENSMUSG00000071015.3|predicted gene 136
mm39_v1_chr9_+_43222104_43222145	0.00910132946016641	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034511.7|Trim29|ENSMUSG00000032013.7|tripartite motif-containing 29
mm39_v1_chr10_-_33920289_33920295	0.008549358484575614	Hoxd11_Cdx1_Hoxc11	ENSMUST00000218239.2|Calhm4|ENSMUSG00000039508.7|calcium homeostasis modulator family member 4
mm39_v1_chr3_-_104684798_104684863	0.008425652561645975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139783.2|Tafa3|ENSMUSG00000055865.9|TAFA chemokine like family member 3
mm39_v1_chr11_+_117375194_117375194	0.008265929900236127	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092394.4|Gm11733|ENSMUSG00000069588.4|predicted gene 11733
mm39_v1_chr14_+_52680447_52680508	0.008163913609478076	Hoxd11_Cdx1_Hoxc11	ENSMUST00000205900.3|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000215030.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206100.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509	ENSMUST00000206718.2|Olfr1509|ENSMUSG00000035626.5|olfactory receptor 1509
mm39_v1_chr3_+_82915031_82915175	0.007840561830731717	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048486.13|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain	ENSMUST00000194175.2|Fgg|ENSMUSG00000033860.14|fibrinogen gamma chain
mm39_v1_chr1_-_73055043_73055068	0.007820505964587386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027374.7|Tnp1|ENSMUSG00000026182.7|transition protein 1
mm39_v1_chr8_-_96302083_96302083	0.007625365977441233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000213096.2|Prss54|ENSMUSG00000048400.14|protease, serine 54	ENSMUST00000052690.13|Prss54|ENSMUSG00000048400.14|protease, serine 54
mm39_v1_chr3_+_122298308_122298324	0.007457599923947871	Hoxd11_Cdx1_Hoxc11	ENSMUST00000199358.2|Bcar3|ENSMUSG00000028121.9|breast cancer anti-estrogen resistance 3
mm39_v1_chr10_+_79656823_79656863	0.007285625638106585	Hoxd11_Cdx1_Hoxc11	ENSMUST00000169041.9|Misp|ENSMUSG00000035852.12|mitotic spindle positioning
mm39_v1_chr2_+_65760477_65760534	0.007260403035221765	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176109.8|Csrnp3|ENSMUSG00000044647.17|cysteine-serine-rich nuclear protein 3
mm39_v1_chr7_-_30750828_30750847	0.007015110015361967	Hoxd11_Cdx1_Hoxc11	ENSMUST00000206341.2|Fxyd7|ENSMUSG00000036578.8|FXYD domain-containing ion transport regulator 7
mm39_v1_chr4_+_33081505_33081505	0.006862664548845503	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147889.2|Gabrr2|ENSMUSG00000023267.11|gamma-aminobutyric acid (GABA) C receptor, subunit rho 2
mm39_v1_chr2_-_113844100_113844116	0.0064291836390721925	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090275.5|Gjd2|ENSMUSG00000068615.5|gap junction protein, delta 2
mm39_v1_chr10_+_101517348_101517525	0.006335762621439936	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179929.8|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000219195.2|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C	ENSMUST00000127504.9|Mgat4c|ENSMUSG00000019888.17|MGAT4 family, member C
mm39_v1_chrX_-_50889955_50890110	0.005970735737985145	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069509.4|Usp26|ENSMUSG00000055780.11|ubiquitin specific peptidase 26	ENSMUST00000114869.8|Usp26|ENSMUSG00000055780.11|ubiquitin specific peptidase 26
mm39_v1_chr13_+_104246259_104246337	0.005927648360153643	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160322.8|Sgtb|ENSMUSG00000042743.14|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	ENSMUST00000159574.2|Sgtb|ENSMUSG00000042743.14|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm39_v1_chr10_+_23875837_23875837	0.005451204570821565	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092658.2|Taar7b|ENSMUSG00000095171.2|trace amine-associated receptor 7B
mm39_v1_chr7_+_123061497_123061519	0.0053614665078429175	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033023.10|Aqp8|ENSMUSG00000030762.12|aquaporin 8
mm39_v1_chr10_+_70276473_70276503	0.005321425013410765	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105436.9|Fam13c|ENSMUSG00000043259.16|family with sequence similarity 13, member C
mm39_v1_chr12_+_113038397_113038421	0.005259256915715266	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155492.2|Tex22|ENSMUSG00000012211.14|testis expressed gene 22
mm39_v1_chr19_+_29923182_29923199	0.0052007062846147764	Hoxd11_Cdx1_Hoxc11	ENSMUST00000025724.9|Il33|ENSMUSG00000024810.17|interleukin 33
mm39_v1_chr16_+_26281885_26282006	0.005142017084295324	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161053.8|Cldn16|ENSMUSG00000038148.14|claudin 16	ENSMUST00000115302.2|Cldn16|ENSMUSG00000038148.14|claudin 16
mm39_v1_chr2_-_31735937_31736017	0.00498503473355136	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028188.8|Fibcd1|ENSMUSG00000026841.8|fibrinogen C domain containing 1
mm39_v1_chr7_+_25005510_25005582	0.0049062019606561395	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119703.8|Tmem145|ENSMUSG00000043843.18|transmembrane protein 145	ENSMUST00000205639.3|Tmem145|ENSMUSG00000043843.18|transmembrane protein 145	ENSMUST00000108409.2|Tmem145|ENSMUSG00000043843.18|transmembrane protein 145
mm39_v1_chr8_+_121842902_121842916	0.0047763755775248485	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054691.8|Foxc2|ENSMUSG00000046714.8|forkhead box C2
mm39_v1_chr6_+_125529911_125529943	0.004570405261523103	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112254.8|Vwf|ENSMUSG00000001930.18|Von Willebrand factor	ENSMUST00000112253.6|Vwf|ENSMUSG00000001930.18|Von Willebrand factor
mm39_v1_chr19_-_10995390_10995404	0.00446659762252603	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177684.3|Ms4a18|ENSMUSG00000094584.3|membrane-spanning 4-domains, subfamily A, member 18
mm39_v1_chr6_-_83513184_83513213	0.004438998941731137	Hoxd11_Cdx1_Hoxc11	ENSMUST00000205926.2|Actg2|ENSMUSG00000059430.15|actin, gamma 2, smooth muscle, enteric
mm39_v1_chr19_+_22425534_22425561	0.0043953922404531874	Hoxd11_Cdx1_Hoxc11	ENSMUST00000235522.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000236372.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000238066.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000235780.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3	ENSMUST00000236804.2|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr7_+_105053775_105053829	0.004371347053939823	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033187.6|Cnga4|ENSMUSG00000030897.6|cyclic nucleotide gated channel alpha 4	ENSMUST00000210344.2|Cnga4|ENSMUSG00000030897.6|cyclic nucleotide gated channel alpha 4
mm39_v1_chr10_-_32765844_32765916	0.00420547432647523	Hoxd11_Cdx1_Hoxc11	ENSMUST00000219125.2|Nkain2|ENSMUSG00000069670.9|Na+/K+ transporting ATPase interacting 2
mm39_v1_chr3_-_141637245_141637284	0.004186130657979675	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106232.8|Bmpr1b|ENSMUSG00000052430.16|bone morphogenetic protein receptor, type 1B
mm39_v1_chr16_+_93885775_93885793	0.0038950335846292075	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072182.9|Sim2|ENSMUSG00000062713.9|single-minded family bHLH transcription factor 2
mm39_v1_chr3_+_103482591_103482694	0.003844829322301286	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090697.11|Syt6|ENSMUSG00000027849.20|synaptotagmin VI	ENSMUST00000239027.2|Syt6|ENSMUSG00000027849.20|synaptotagmin VI
mm39_v1_chr3_-_26386609_26386609	0.0038190260878345327	Hoxd11_Cdx1_Hoxc11	ENSMUST00000193603.6|Nlgn1|ENSMUSG00000063887.14|neuroligin 1
mm39_v1_chr10_-_105410280_105410313	0.0037886613799612595	Hoxd11_Cdx1_Hoxc11	ENSMUST00000061506.9|Tmtc2|ENSMUSG00000036019.9|transmembrane and tetratricopeptide repeat containing 2
mm39_v1_chr13_-_3995349_3995349	0.003753778178457735	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058610.8|Ucn3|ENSMUSG00000044988.8|urocortin 3
mm39_v1_chr11_-_24025054_24025054	0.0036819124739961955	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068360.2|A830031A19Rik|ENSMUSG00000055010.2|RIKEN cDNA A830031A19 gene
mm39_v1_chr5_+_43673093_43673137	0.0034698853816965275	Hoxd11_Cdx1_Hoxc11	ENSMUST00000144558.3|C1qtnf7|ENSMUSG00000061535.12|C1q and tumor necrosis factor related protein 7
mm39_v1_chr1_-_22551594_22551621	0.0033555867491315114	Hoxd11_Cdx1_Hoxc11	ENSMUST00000239255.2|Rims1|ENSMUSG00000041670.20|regulating synaptic membrane exocytosis 1
mm39_v1_chr13_+_93810911_93810959	0.0033541740457769895	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048001.8|Dmgdh|ENSMUSG00000042102.8|dimethylglycine dehydrogenase precursor
mm39_v1_chr8_-_96301825_96301825	0.003295703625581536	Hoxd11_Cdx1_Hoxc11	ENSMUST00000180075.2|Prss54|ENSMUSG00000048400.14|protease, serine 54
mm39_v1_chr4_-_102883905_102884039	0.003000095088981027	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084382.6|Insl5|ENSMUSG00000066090.6|insulin-like 5	ENSMUST00000106869.3|Insl5|ENSMUSG00000066090.6|insulin-like 5
mm39_v1_chr1_+_66360865_66360878	0.0029918791129437163	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114013.8|Map2|ENSMUSG00000015222.19|microtubule-associated protein 2
mm39_v1_chr3_+_103482547_103482572	0.002600883883114812	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121834.8|Syt6|ENSMUSG00000027849.20|synaptotagmin VI
mm39_v1_chr4_-_141553306_141553471	0.0025204453353951497	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102481.4|Cela2a|ENSMUSG00000058579.6|chymotrypsin-like elastase family, member 2A
mm39_v1_chr2_+_139520098_139520098	0.0023925664703857495	Hoxd11_Cdx1_Hoxc11	ENSMUST00000184404.8|Ism1|ENSMUSG00000074766.11|isthmin 1, angiogenesis inhibitor	ENSMUST00000099307.4|Ism1|ENSMUSG00000074766.11|isthmin 1, angiogenesis inhibitor
mm39_v1_chrX_+_132809166_132809180	0.0023877571063998433	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033606.15|Srpx2|ENSMUSG00000031253.16|sushi-repeat-containing protein, X-linked 2
mm39_v1_chr7_+_107564010_107564010	0.0023311547776163656	Hoxd11_Cdx1_Hoxc11	ENSMUST00000217173.2|Olfr476|ENSMUSG00000095301.3|olfactory receptor 476
mm39_v1_chr16_-_58459102_58459102	0.0023166687121650934	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053249.9|Ftdc2|ENSMUSG00000055789.8|ferritin domain containing 2
mm39_v1_chr14_-_20546848_20546969	0.0022771327066271672	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022353.5|Mss51|ENSMUSG00000021815.5|MSS51 mitochondrial translational activator
mm39_v1_chrX_+_35459557_35459588	0.0021722332026004425	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115258.9|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr2_+_74552322_74552418	0.0021102055321999807	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047904.4|Hoxd4|ENSMUSG00000101174.9|homeobox D4
mm39_v1_chr19_+_22425565_22425596	0.0020502046519990966	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037901.14|Trpm3|ENSMUSG00000052387.17|transient receptor potential cation channel, subfamily M, member 3
mm39_v1_chr5_+_138185747_138185829	0.0020475065554957654	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110934.9|Cnpy4|ENSMUSG00000036968.16|canopy FGF signaling regulator 4
mm39_v1_chrX_+_35459589_35459600	0.0020024295544646903	Hoxd11_Cdx1_Hoxc11	ENSMUST00000048067.10|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr2_-_76190791_76190809	0.0019174661200257737	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028430.6|Cyct|ENSMUSG00000056436.5|cytochrome c, testis
mm39_v1_chr17_+_72088281_72088301	0.001891529114097475	Hoxd11_Cdx1_Hoxc11	ENSMUST00000229874.2|Clip4|ENSMUSG00000024059.11|CAP-GLY domain containing linker protein family, member 4
mm39_v1_chr1_-_166325157_166325157	0.0018157606787677619	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143922.2|Gm4846|ENSMUSG00000086056.2|predicted gene 4846
mm39_v1_chr2_-_121381832_121381861	0.001730402458889918	Hoxd11_Cdx1_Hoxc11	ENSMUST00000212518.2|Frmd5|ENSMUSG00000027238.18|FERM domain containing 5
mm39_v1_chrX_+_35459601_35459614	0.0016399775867065043	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115257.8|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr4_-_49408040_49408151	0.0013782965879610845	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081541.9|Acnat2|ENSMUSG00000060317.10|acyl-coenzyme A amino acid N-acyltransferase 2
mm39_v1_chr3_+_75981577_75981577	0.001267483460214144	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038364.15|Fstl5|ENSMUSG00000034098.15|follistatin-like 5
mm39_v1_chr16_+_34471558_34471591	0.0012109450804770588	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023530.5|Ropn1|ENSMUSG00000022832.12|ropporin, rhophilin associated protein 1
mm39_v1_chr3_+_93052089_93052106	0.0011966893944882055	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107300.7|Crnn|ENSMUSG00000078657.7|cornulin	ENSMUST00000195515.2|Crnn|ENSMUSG00000078657.7|cornulin
mm39_v1_chrX_+_35459621_35459646	0.0011718102027751492	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115256.2|Zcchc12|ENSMUSG00000036699.13|zinc finger, CCHC domain containing 12
mm39_v1_chr18_-_47466378_47466439	0.0011526835976153936	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126684.2|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000156422.8|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr14_+_33775423_33775431	0.0010531344922916671	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058725.5|Antxrl|ENSMUSG00000047441.5|anthrax toxin receptor-like
mm39_v1_chr13_+_19398273_19398273	0.0009232409148582991	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103558.3|Trgc1|ENSMUSG00000076749.3|T cell receptor gamma, constant 1
mm39_v1_chr7_-_133833854_133833879	0.0007243070449933091	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127524.2|Adam12|ENSMUSG00000054555.12|a disintegrin and metallopeptidase domain 12 (meltrin alpha)
mm39_v1_chr18_+_13139992_13140094	0.0006131116216534386	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041676.3|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234084.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4	ENSMUST00000234565.2|Hrh4|ENSMUSG00000037346.6|histamine receptor H4
mm39_v1_chr18_+_37637317_37637349	0.0005736446133643287	Hoxd11_Cdx1_Hoxc11	ENSMUST00000052179.8|Pcdhb20|ENSMUSG00000046191.8|protocadherin beta 20
mm39_v1_chr15_+_83676140_83676355	0.0005192226762853711	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172115.8|Mpped1|ENSMUSG00000041708.13|metallophosphoesterase domain containing 1	ENSMUST00000172398.2|Mpped1|ENSMUSG00000041708.13|metallophosphoesterase domain containing 1
mm39_v1_chr12_+_113038376_113038392	0.000494697871061982	Hoxd11_Cdx1_Hoxc11	ENSMUST00000109729.3|Tex22|ENSMUSG00000012211.14|testis expressed gene 22
mm39_v1_chr2_+_111327525_111327525	0.0004293217812262643	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121345.4|Olfr1291-ps1|ENSMUSG00000108891.5|olfactory receptor 1291, pseudogene 1
mm39_v1_chrX_+_104807868_104807885	0.000394531059191743	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033581.4|Fgf16|ENSMUSG00000031230.4|fibroblast growth factor 16
mm39_v1_chr4_-_82970467_82970576	0.00038931950406727393	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107230.8|Frem1|ENSMUSG00000059049.15|Fras1 related extracellular matrix protein 1
mm39_v1_chr3_+_102981326_102981349	0.00033235206405162013	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090715.13|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1	ENSMUST00000155034.6|Ampd1|ENSMUSG00000070385.13|adenosine monophosphate deaminase 1
mm39_v1_chr1_-_144052997_144053110	0.0002868778953991541	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111941.2|Rgs13|ENSMUSG00000051079.9|regulator of G-protein signaling 13	ENSMUST00000052375.8|Rgs13|ENSMUSG00000051079.9|regulator of G-protein signaling 13
mm39_v1_chr1_+_82817794_82817893	0.0001670589382628637	Hoxd11_Cdx1_Hoxc11	ENSMUST00000186043.2|Agfg1|ENSMUSG00000026159.14|ArfGAP with FG repeats 1
