mm39_v1_chr16_+_51851948_51852009	0.9419378570182814	Nkx1-1_Nkx1-2	ENSMUST00000226593.2|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr16_+_51851917_51851933	0.8750641932511193	Nkx1-1_Nkx1-2	ENSMUST00000227062.2|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr19_-_12313274_12313274	0.7469341186675447	Nkx1-1_Nkx1-2	ENSMUST00000208398.3|Olfr1438-ps1|ENSMUSG00000109328.3|olfactory receptor 1438, pseudogene 1
mm39_v1_chr6_-_57340712_57340712	0.7062929076239769	Nkx1-1_Nkx1-2	ENSMUST00000228156.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17	ENSMUST00000227186.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17	ENSMUST00000228294.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17	ENSMUST00000228342.2|Vmn1r17|ENSMUSG00000115644.2|vomeronasal 1 receptor 17
mm39_v1_chr16_+_51851588_51851705	0.6052780714626411	Nkx1-1_Nkx1-2	ENSMUST00000114471.3|Cblb|ENSMUSG00000022637.12|Casitas B-lineage lymphoma b
mm39_v1_chr2_-_89855921_89855921	0.5741879546457892	Nkx1-1_Nkx1-2	ENSMUST00000216616.3|Olfr1264|ENSMUSG00000075069.4|olfactory receptor 1264
mm39_v1_chr5_-_84565218_84565248	0.5404250802722775	Nkx1-1_Nkx1-2	ENSMUST00000113401.4|Epha5|ENSMUSG00000029245.17|Eph receptor A5
mm39_v1_chr8_-_3744167_3744183	0.5293087139860666	Nkx1-1_Nkx1-2	ENSMUST00000005678.6|Fcer2a|ENSMUSG00000005540.11|Fc receptor, IgE, low affinity II, alpha polypeptide
mm39_v1_chr10_-_44024843_44024866	0.48812820741316454	Nkx1-1_Nkx1-2	ENSMUST00000200401.2|Crybg1|ENSMUSG00000019866.16|crystallin beta-gamma domain containing 1
mm39_v1_chr13_-_105191403_105191438	0.48116468998520945	Nkx1-1_Nkx1-2	ENSMUST00000063551.7|Rgs7bp|ENSMUSG00000021719.10|regulator of G-protein signalling 7 binding protein
mm39_v1_chr17_-_37974666_37974673	0.4732794967356593	Nkx1-1_Nkx1-2	ENSMUST00000215414.2|Olfr117|ENSMUSG00000095286.4|olfactory receptor 117	ENSMUST00000213638.3|Olfr117|ENSMUSG00000095286.4|olfactory receptor 117
mm39_v1_chr1_-_92412835_92412835	0.4603426448046916	Nkx1-1_Nkx1-2	ENSMUST00000214928.3|Olfr1416|ENSMUSG00000067064.5|olfactory receptor 1416
mm39_v1_chr7_+_26895206_26895255	0.4381544083589495	Nkx1-1_Nkx1-2	ENSMUST00000179391.8|BC024978|ENSMUSG00000078786.10|cDNA sequence BC024978	ENSMUST00000108379.8|BC024978|ENSMUSG00000078786.10|cDNA sequence BC024978
mm39_v1_chr4_-_131802606_131802652	0.4236079452503012	Nkx1-1_Nkx1-2	ENSMUST00000146021.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr6_+_57405915_57405915	0.42202479991148656	Nkx1-1_Nkx1-2	ENSMUST00000227909.2|Vmn1r20|ENSMUSG00000115253.2|vomeronasal 1 receptor 20
mm39_v1_chr3_-_15902583_15902692	0.4138430455032256	Nkx1-1_Nkx1-2	ENSMUST00000108354.8|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000108349.2|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000108352.9|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000108350.8|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C	ENSMUST00000050623.11|Sirpb1c|ENSMUSG00000074677.12|signal-regulatory protein beta 1C
mm39_v1_chr2_-_111843053_111843053	0.3962222761185602	Nkx1-1_Nkx1-2	ENSMUST00000213559.3|Olfr1310|ENSMUSG00000108827.4|olfactory receptor 1310
mm39_v1_chr10_-_128875765_128875765	0.3936741080910656	Nkx1-1_Nkx1-2	ENSMUST00000204763.3|Olfr764-ps1|ENSMUSG00000107648.5|olfactory receptor 764, pseudogene 1
mm39_v1_chrX_+_159551009_159551114	0.3671927960790249	Nkx1-1_Nkx1-2	ENSMUST00000033650.14|Rs1|ENSMUSG00000031293.14|retinoschisis (X-linked, juvenile) 1 (human)
mm39_v1_chr6_-_58195806_58195806	0.3669245598098805	Nkx1-1_Nkx1-2	ENSMUST00000228530.2|Vmn1r27|ENSMUSG00000071428.3|vomeronasal 1 receptor 27	ENSMUST00000226666.2|Vmn1r27|ENSMUSG00000071428.3|vomeronasal 1 receptor 27
mm39_v1_chr10_+_129539079_129539079	0.35537893001104764	Nkx1-1_Nkx1-2	ENSMUST00000213331.2|Olfr804|ENSMUSG00000095401.3|olfactory receptor 804
mm39_v1_chr7_+_140181182_140181253	0.3464512459854701	Nkx1-1_Nkx1-2	ENSMUST00000214180.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46	ENSMUST00000211771.2|Olfr46|ENSMUSG00000093942.4|olfactory receptor 46
mm39_v1_chr2_-_89423470_89423501	0.3452152582108256	Nkx1-1_Nkx1-2	ENSMUST00000217254.2|Olfr1246|ENSMUSG00000111715.2|olfactory receptor 1246	ENSMUST00000217192.2|Olfr1246|ENSMUSG00000111715.2|olfactory receptor 1246	ENSMUST00000213221.2|Olfr1246|ENSMUSG00000111715.2|olfactory receptor 1246
mm39_v1_chr1_+_173093568_173093568	0.34147239265173457	Nkx1-1_Nkx1-2	ENSMUST00000213420.2|Olfr418|ENSMUSG00000049605.4|olfactory receptor 418
mm39_v1_chr7_+_3648264_3648351	0.33559513699974874	Nkx1-1_Nkx1-2	ENSMUST00000206287.2|Cnot3|ENSMUSG00000035632.17|CCR4-NOT transcription complex, subunit 3	ENSMUST00000038913.16|Cnot3|ENSMUSG00000035632.17|CCR4-NOT transcription complex, subunit 3
mm39_v1_chr8_+_114362181_114362233	0.33491626020691534	Nkx1-1_Nkx1-2	ENSMUST00000179926.9|Mon1b|ENSMUSG00000078908.11|MON1 homolog B, secretory traffciking associated
mm39_v1_chrX_+_102400061_102400094	0.3340916702549167	Nkx1-1_Nkx1-2	ENSMUST00000116547.3|Chic1|ENSMUSG00000031327.11|cysteine-rich hydrophobic domain 1
mm39_v1_chr7_-_12829100_12829100	0.3185072203227973	Nkx1-1_Nkx1-2	ENSMUST00000209822.3|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85	ENSMUST00000235753.2|Vmn1r85|ENSMUSG00000070817.4|vomeronasal 1 receptor 85
mm39_v1_chr8_+_114362419_114362474	0.2905393286639546	Nkx1-1_Nkx1-2	ENSMUST00000035777.10|Mon1b|ENSMUSG00000078908.11|MON1 homolog B, secretory traffciking associated
mm39_v1_chr7_-_11414074_11414074	0.28952255590553566	Nkx1-1_Nkx1-2	ENSMUST00000227010.2|Vmn1r72|ENSMUSG00000095430.4|vomeronasal 1 receptor 72	ENSMUST00000209638.3|Vmn1r72|ENSMUSG00000095430.4|vomeronasal 1 receptor 72
mm39_v1_chr4_-_131802561_131802603	0.26512124177467034	Nkx1-1_Nkx1-2	ENSMUST00000105970.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1	ENSMUST00000105975.8|Epb41|ENSMUSG00000028906.18|erythrocyte membrane protein band 4.1
mm39_v1_chr1_-_91386976_91387058	0.2614191788981317	Nkx1-1_Nkx1-2	ENSMUST00000069620.10|Per2|ENSMUSG00000055866.10|period circadian clock 2
mm39_v1_chr7_-_100613579_100613615	0.2536335272981686	Nkx1-1_Nkx1-2	ENSMUST00000060174.6|P2ry6|ENSMUSG00000048779.6|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm39_v1_chr7_-_73187369_73187513	0.2498306158736208	Nkx1-1_Nkx1-2	ENSMUST00000172704.6|Chd2|ENSMUSG00000078671.12|chromodomain helicase DNA binding protein 2
mm39_v1_chr11_+_121128042_121128116	0.24921717198275214	Nkx1-1_Nkx1-2	ENSMUST00000103015.4|Narf|ENSMUSG00000000056.8|nuclear prelamin A recognition factor
mm39_v1_chrX_-_73129195_73129296	0.2215787817302478	Nkx1-1_Nkx1-2	ENSMUST00000140399.3|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000123362.8|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000100750.10|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2	ENSMUST00000033770.13|Mecp2|ENSMUSG00000031393.17|methyl CpG binding protein 2
mm39_v1_chr12_-_25146078_25146095	0.21851308396664174	Nkx1-1_Nkx1-2	ENSMUST00000222667.2|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2	ENSMUST00000020974.7|Id2|ENSMUSG00000020644.10|inhibitor of DNA binding 2
mm39_v1_chr19_+_12364643_12364664	0.2069739389517194	Nkx1-1_Nkx1-2	ENSMUST00000217062.3|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000216145.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440	ENSMUST00000213657.2|Olfr1440|ENSMUSG00000046650.5|olfactory receptor 1440
mm39_v1_chr11_-_99134885_99134964	0.18145226221990662	Nkx1-1_Nkx1-2	ENSMUST00000103132.10|Krt222|ENSMUSG00000035849.15|keratin 222	ENSMUST00000038214.7|Krt222|ENSMUSG00000035849.15|keratin 222
mm39_v1_chr1_-_150341911_150341921	0.18095948622979385	Nkx1-1_Nkx1-2	ENSMUST00000162367.8|Prg4|ENSMUSG00000006014.17|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	ENSMUST00000161611.8|Prg4|ENSMUSG00000006014.17|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	ENSMUST00000161320.8|Prg4|ENSMUSG00000006014.17|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	ENSMUST00000159035.2|Prg4|ENSMUSG00000006014.17|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm39_v1_chr4_-_132191181_132191240	0.17936568311566195	Nkx1-1_Nkx1-2	ENSMUST00000102567.4|Med18|ENSMUSG00000066042.5|mediator complex subunit 18
mm39_v1_chr2_-_160950936_160950950	0.17629679377892943	Nkx1-1_Nkx1-2	ENSMUST00000039782.14|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6	ENSMUST00000134178.8|Chd6|ENSMUSG00000057133.15|chromodomain helicase DNA binding protein 6
mm39_v1_chr9_-_107749594_107749627	0.17117916822382678	Nkx1-1_Nkx1-2	ENSMUST00000183035.2|Rbm6|ENSMUSG00000032582.15|RNA binding motif protein 6
mm39_v1_chr14_-_52277310_52277358	0.17091477107299874	Nkx1-1_Nkx1-2	ENSMUST00000216907.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000214071.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221	ENSMUST00000216188.2|Olfr221|ENSMUSG00000044286.7|olfactory receptor 221
mm39_v1_chr4_-_43710231_43710255	0.1658532294010517	Nkx1-1_Nkx1-2	ENSMUST00000217544.2|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71	ENSMUST00000107862.3|Olfr71|ENSMUSG00000046450.4|olfactory receptor 71
mm39_v1_chr12_+_108145802_108145842	0.16517415155860823	Nkx1-1_Nkx1-2	ENSMUST00000221167.2|Ccnk|ENSMUSG00000021258.11|cyclin K
mm39_v1_chr15_-_77840856_77840927	0.16211992380646112	Nkx1-1_Nkx1-2	ENSMUST00000117725.2|Foxred2|ENSMUSG00000016552.14|FAD-dependent oxidoreductase domain containing 2	ENSMUST00000016696.13|Foxred2|ENSMUSG00000016552.14|FAD-dependent oxidoreductase domain containing 2
mm39_v1_chr7_-_30251680_30251741	0.15956777926353288	Nkx1-1_Nkx1-2	ENSMUST00000215288.2|Proser3|ENSMUSG00000036864.17|proline and serine rich 3	ENSMUST00000108165.8|Proser3|ENSMUSG00000036864.17|proline and serine rich 3	ENSMUST00000153594.3|Proser3|ENSMUSG00000036864.17|proline and serine rich 3
mm39_v1_chr6_+_29694181_29694247	0.1556108273444301	Nkx1-1_Nkx1-2	ENSMUST00000046750.14|Tspan33|ENSMUSG00000001763.15|tetraspanin 33	ENSMUST00000115250.4|Tspan33|ENSMUSG00000001763.15|tetraspanin 33
mm39_v1_chr8_+_84262409_84262409	0.1544983399862599	Nkx1-1_Nkx1-2	ENSMUST00000214156.2|Olfr370|ENSMUSG00000047286.8|olfactory receptor 370	ENSMUST00000209408.4|Olfr370|ENSMUSG00000047286.8|olfactory receptor 370
mm39_v1_chr9_+_40092216_40092217	0.15331064477681727	Nkx1-1_Nkx1-2	ENSMUST00000218134.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000216720.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986	ENSMUST00000214763.2|Olfr986|ENSMUSG00000051095.8|olfactory receptor 986
mm39_v1_chr17_+_21446349_21446349	0.15295422317019416	Nkx1-1_Nkx1-2	ENSMUST00000235895.2|Vmn1r234|ENSMUSG00000057203.4|vomeronasal 1 receptor 234
mm39_v1_chr4_-_141327146_141327235	0.1470518071730326	Nkx1-1_Nkx1-2	ENSMUST00000141518.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1	ENSMUST00000127455.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1	ENSMUST00000105784.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1
mm39_v1_chr5_-_74692327_74692420	0.14507151974408508	Nkx1-1_Nkx1-2	ENSMUST00000072857.13|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2	ENSMUST00000113542.9|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2	ENSMUST00000151474.3|Scfd2|ENSMUSG00000062110.15|Sec1 family domain containing 2
mm39_v1_chr19_+_11943265_11943305	0.14053315409946712	Nkx1-1_Nkx1-2	ENSMUST00000025590.11|Osbp|ENSMUSG00000024687.12|oxysterol binding protein
mm39_v1_chr8_+_84699580_84699658	0.1384324360450781	Nkx1-1_Nkx1-2	ENSMUST00000005606.8|Prkaca|ENSMUSG00000005469.11|protein kinase, cAMP dependent, catalytic, alpha
mm39_v1_chr4_+_136038263_136038296	0.12474801881686633	Nkx1-1_Nkx1-2	ENSMUST00000105850.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R	ENSMUST00000148843.10|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr6_-_128339458_128339542	0.12354975810265031	Nkx1-1_Nkx1-2	ENSMUST00000155573.3|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1
mm39_v1_chr12_+_4819022_4819107	0.12212179484457708	Nkx1-1_Nkx1-2	ENSMUST00000219503.2|Pfn4|ENSMUSG00000020639.15|profilin family, member 4
mm39_v1_chr5_-_143846600_143846665	0.1219948513918761	Nkx1-1_Nkx1-2	ENSMUST00000031613.11|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	ENSMUST00000100483.3|Aimp2|ENSMUSG00000029610.14|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm39_v1_chr18_+_4993795_4993818	0.12156315289283924	Nkx1-1_Nkx1-2	ENSMUST00000153016.8|Svil|ENSMUSG00000024236.19|supervillin
mm39_v1_chrX_-_49108236_49108236	0.11984583135607133	Nkx1-1_Nkx1-2	ENSMUST00000213556.3|Olfr1323|ENSMUSG00000050504.4|olfactory receptor 1323	ENSMUST00000213463.2|Olfr1323|ENSMUSG00000050504.4|olfactory receptor 1323
mm39_v1_chr11_-_97040858_97040922	0.10680848481969377	Nkx1-1_Nkx1-2	ENSMUST00000118375.8|Tbkbp1|ENSMUSG00000038517.16|TBK1 binding protein 1
mm39_v1_chr19_+_5540483_5540517	0.10174809619353063	Nkx1-1_Nkx1-2	ENSMUST00000209469.2|Cfl1|ENSMUSG00000056201.9|cofilin 1, non-muscle	ENSMUST00000116560.3|Cfl1|ENSMUSG00000056201.9|cofilin 1, non-muscle
mm39_v1_chr6_-_58452315_58452315	0.1014001986089795	Nkx1-1_Nkx1-2	ENSMUST00000177318.3|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31	ENSMUST00000176147.9|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31	ENSMUST00000176023.3|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31	ENSMUST00000228586.2|Vmn1r31|ENSMUSG00000115404.2|vomeronasal 1 receptor 31
mm39_v1_chr14_-_70666513_70666545	0.10012355165961612	Nkx1-1_Nkx1-2	ENSMUST00000226426.2|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2	ENSMUST00000048129.6|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2
mm39_v1_chr4_+_136038301_136038365	0.09351127299745537	Nkx1-1_Nkx1-2	ENSMUST00000084219.12|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr15_+_98350469_98350469	0.09267618569393885	Nkx1-1_Nkx1-2	ENSMUST00000217517.2|Olfr281|ENSMUSG00000032987.10|olfactory receptor 281
mm39_v1_chr11_-_22236795_22236840	0.09020629016667368	Nkx1-1_Nkx1-2	ENSMUST00000180360.8|Ehbp1|ENSMUSG00000042302.15|EH domain binding protein 1	ENSMUST00000109563.9|Ehbp1|ENSMUSG00000042302.15|EH domain binding protein 1
mm39_v1_chr4_+_136038243_136038258	0.08639830666163406	Nkx1-1_Nkx1-2	ENSMUST00000131671.8|Hnrnpr|ENSMUSG00000066037.15|heterogeneous nuclear ribonucleoprotein R
mm39_v1_chr2_+_111355548_111355548	0.08367567763819657	Nkx1-1_Nkx1-2	ENSMUST00000217845.3|Olfr1293-ps|ENSMUSG00000108908.5|olfactory receptor 1293, pseudogene
mm39_v1_chr19_+_29344846_29344868	0.08325660172986869	Nkx1-1_Nkx1-2	ENSMUST00000016640.8|Cd274|ENSMUSG00000016496.8|CD274 antigen
mm39_v1_chr17_-_57338468_57338538	0.08218067272992893	Nkx1-1_Nkx1-2	ENSMUST00000007814.10|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein	ENSMUST00000233480.2|Khsrp|ENSMUSG00000007670.11|KH-type splicing regulatory protein
mm39_v1_chr5_-_137101108_137101131	0.07463177222744281	Nkx1-1_Nkx1-2	ENSMUST00000077523.4|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1	ENSMUST00000041388.11|Serpine1|ENSMUSG00000037411.11|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm39_v1_chr12_+_52746158_52746186	0.06925660475960821	Nkx1-1_Nkx1-2	ENSMUST00000095737.5|Akap6|ENSMUSG00000061603.9|A kinase (PRKA) anchor protein 6
mm39_v1_chr2_-_45002902_45003021	0.06880398688510567	Nkx1-1_Nkx1-2	ENSMUST00000076836.13|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000176732.8|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2	ENSMUST00000200844.4|Zeb2|ENSMUSG00000026872.19|zinc finger E-box binding homeobox 2
mm39_v1_chr9_-_26717686_26717764	0.0673841766251764	Nkx1-1_Nkx1-2	ENSMUST00000162702.8|Glb1l2|ENSMUSG00000036395.16|galactosidase, beta 1-like 2	ENSMUST00000040398.14|Glb1l2|ENSMUSG00000036395.16|galactosidase, beta 1-like 2	ENSMUST00000066560.13|Glb1l2|ENSMUSG00000036395.16|galactosidase, beta 1-like 2
mm39_v1_chr12_-_4819216_4819267	0.06352974676028719	Nkx1-1_Nkx1-2	ENSMUST00000053458.7|Fam228b|ENSMUSG00000050545.11|family with sequence similarity 228, member B	ENSMUST00000218575.2|Fam228b|ENSMUSG00000050545.11|family with sequence similarity 228, member B
mm39_v1_chr2_-_165230165_165230235	0.0629185455548025	Nkx1-1_Nkx1-2	ENSMUST00000103084.4|Zfp334|ENSMUSG00000017667.10|zinc finger protein 334
mm39_v1_chr2_-_102230602_102230743	0.061695004375274226	Nkx1-1_Nkx1-2	ENSMUST00000152929.2|Trim44|ENSMUSG00000027189.17|tripartite motif-containing 44
mm39_v1_chr7_-_26895141_26895192	0.06165922497773634	Nkx1-1_Nkx1-2	ENSMUST00000163311.9|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A	ENSMUST00000126211.2|Snrpa|ENSMUSG00000061479.16|small nuclear ribonucleoprotein polypeptide A
mm39_v1_chr2_+_85804239_85804239	0.06018597144874992	Nkx1-1_Nkx1-2	ENSMUST00000217244.2|Olfr1029|ENSMUSG00000059873.5|olfactory receptor 1029
mm39_v1_chr7_-_19363280_19363372	0.05737970595907155	Nkx1-1_Nkx1-2	ENSMUST00000094762.10|Relb|ENSMUSG00000002983.18|avian reticuloendotheliosis viral (v-rel) oncogene related B	ENSMUST00000049912.15|Relb|ENSMUSG00000002983.18|avian reticuloendotheliosis viral (v-rel) oncogene related B	ENSMUST00000098754.5|Relb|ENSMUSG00000002983.18|avian reticuloendotheliosis viral (v-rel) oncogene related B
mm39_v1_chr16_+_13176238_13176334	0.05613568977253343	Nkx1-1_Nkx1-2	ENSMUST00000149359.2|Mrtfb|ENSMUSG00000009569.15|myocardin related transcription factor B
mm39_v1_chr5_+_143846782_143846875	0.05301289572246499	Nkx1-1_Nkx1-2	ENSMUST00000148011.8|Pms2|ENSMUSG00000079109.12|PMS1 homolog2, mismatch repair system component	ENSMUST00000110709.7|Pms2|ENSMUSG00000079109.12|PMS1 homolog2, mismatch repair system component
mm39_v1_chr9_-_66033841_66033885	0.05024678613296155	Nkx1-1_Nkx1-2	ENSMUST00000137542.2|Snx1|ENSMUSG00000032382.15|sorting nexin 1
mm39_v1_chr10_+_116137277_116137333	0.046686088581537666	Nkx1-1_Nkx1-2	ENSMUST00000092167.7|Ptprb|ENSMUSG00000020154.11|protein tyrosine phosphatase, receptor type, B
mm39_v1_chr16_-_22676264_22676419	0.045855140417024216	Nkx1-1_Nkx1-2	ENSMUST00000232075.2|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1	ENSMUST00000004576.8|Tbccd1|ENSMUSG00000004462.8|TBCC domain containing 1
mm39_v1_chr4_-_88595161_88595161	0.04405207672210952	Nkx1-1_Nkx1-2	ENSMUST00000105148.2|Ifna16|ENSMUSG00000078355.2|interferon alpha 16
mm39_v1_chr4_-_141327253_141327343	0.03410909387664311	Nkx1-1_Nkx1-2	ENSMUST00000147785.8|Fblim1|ENSMUSG00000006219.13|filamin binding LIM protein 1
mm39_v1_chrX_+_57076359_57076378	0.028700297242113492	Nkx1-1_Nkx1-2	ENSMUST00000088631.11|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3	ENSMUST00000088629.4|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3
mm39_v1_chr1_+_173924457_173924457	0.02426684109671225	Nkx1-1_Nkx1-2	ENSMUST00000213832.2|Olfr427|ENSMUSG00000059371.5|olfactory receptor 427
mm39_v1_chr6_+_37847721_37847892	0.02053166024250195	Nkx1-1_Nkx1-2	ENSMUST00000031859.14|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24	ENSMUST00000120428.8|Trim24|ENSMUSG00000029833.18|tripartite motif-containing 24
mm39_v1_chr6_+_145561483_145561493	0.01971615986788305	Nkx1-1_Nkx1-2	ENSMUST00000087445.7|Tuba3b|ENSMUSG00000067338.7|tubulin, alpha 3B
mm39_v1_chr2_+_154390808_154390862	0.019611382170118007	Nkx1-1_Nkx1-2	ENSMUST00000045116.11|1700003F12Rik|ENSMUSG00000038523.11|RIKEN cDNA 1700003F12 gene	ENSMUST00000109709.4|1700003F12Rik|ENSMUSG00000038523.11|RIKEN cDNA 1700003F12 gene
mm39_v1_chr2_-_89678487_89678487	0.018340329689262764	Nkx1-1_Nkx1-2	ENSMUST00000214428.3|Olfr48|ENSMUSG00000075072.4|olfactory receptor 48
mm39_v1_chr5_-_90788323_90788397	0.017214093244508198	Nkx1-1_Nkx1-2	ENSMUST00000202784.4|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6	ENSMUST00000031317.10|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6	ENSMUST00000201370.2|Rassf6|ENSMUSG00000029370.11|Ras association (RalGDS/AF-6) domain family member 6
mm39_v1_chrX_+_57075981_57076003	0.016420622029256697	Nkx1-1_Nkx1-2	ENSMUST00000088627.11|Zic3|ENSMUSG00000067860.12|zinc finger protein of the cerebellum 3
mm39_v1_chr5_+_9150691_9150771	0.014977997669572887	Nkx1-1_Nkx1-2	ENSMUST00000115365.3|Tmem243|ENSMUSG00000079659.6|transmembrane protein 243, mitochondrial
mm39_v1_chr14_+_67148619_67148698	0.013922865621727563	Nkx1-1_Nkx1-2	ENSMUST00000089236.11|Pnma2|ENSMUSG00000046204.15|paraneoplastic antigen MA2	ENSMUST00000122431.3|Pnma2|ENSMUSG00000046204.15|paraneoplastic antigen MA2
mm39_v1_chr16_+_22965286_22965328	0.01173410067287451	Nkx1-1_Nkx1-2	ENSMUST00000023593.6|Adipoq|ENSMUSG00000022878.6|adiponectin, C1Q and collagen domain containing
mm39_v1_chr6_-_69704122_69704147	0.011508459856816847	Nkx1-1_Nkx1-2	ENSMUST00000103364.3|Igkv5-48|ENSMUSG00000076563.3|immunoglobulin kappa variable 5-48
mm39_v1_chr1_-_173161069_173161088	0.010812013771602024	Nkx1-1_Nkx1-2	ENSMUST00000038227.6|Ackr1|ENSMUSG00000037872.6|atypical chemokine receptor 1 (Duffy blood group)
mm39_v1_chr6_-_128339775_128339889	0.009130104543176065	Nkx1-1_Nkx1-2	ENSMUST00000112152.8|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1	ENSMUST00000057421.15|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1	ENSMUST00000112151.2|Rhno1|ENSMUSG00000048668.17|RAD9-HUS1-RAD1 interacting nuclear orphan 1
mm39_v1_chr11_+_116734104_116734104	0.008852091271725917	Nkx1-1_Nkx1-2	ENSMUST00000106370.10|Mettl23|ENSMUSG00000090266.11|methyltransferase like 23
mm39_v1_chr7_+_128346655_128346745	0.0058976318708573155	Nkx1-1_Nkx1-2	ENSMUST00000042942.10|Sec23ip|ENSMUSG00000055319.9|Sec23 interacting protein
mm39_v1_chr1_-_131441962_131441975	0.005818517576263724	Nkx1-1_Nkx1-2	ENSMUST00000185445.3|Srgap2|ENSMUSG00000026425.16|SLIT-ROBO Rho GTPase activating protein 2
mm39_v1_chr14_-_59602882_59602943	0.003506516454567103	Nkx1-1_Nkx1-2	ENSMUST00000160425.8|Phf11d|ENSMUSG00000068245.15|PHD finger protein 11D	ENSMUST00000095157.11|Phf11d|ENSMUSG00000068245.15|PHD finger protein 11D
mm39_v1_chr14_-_70666821_70666866	0.0010259395554525735	Nkx1-1_Nkx1-2	ENSMUST00000226229.2|Piwil2|ENSMUSG00000033644.6|piwi-like RNA-mediated gene silencing 2
