mm39_v1_chr11_+_98851238_98851312	0.3125622023482029	Rara	ENSMUST00000107473.3|Rara|ENSMUSG00000037992.17|retinoic acid receptor, alpha
mm39_v1_chr2_+_32498997_32499099	0.29283639924308547	Rara	ENSMUST00000143625.2|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	ENSMUST00000128811.2|St6galnac6|ENSMUSG00000026811.19|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
mm39_v1_chr12_-_115832846_115832874	0.26370839535928914	Rara	ENSMUST00000199373.2|Ighv1-78|ENSMUSG00000096326.3|immunoglobulin heavy variable 1-78
mm39_v1_chr7_+_16716989_16717075	0.2624951060174999	Rara	ENSMUST00000206129.3|Gm42372|ENSMUSG00000108348.3|predicted gene, 42372
mm39_v1_chr4_+_32238712_32238804	0.18954355691883176	Rara	ENSMUST00000108180.9|Bach2|ENSMUSG00000040270.17|BTB and CNC homology, basic leucine zipper transcription factor 2
mm39_v1_chr6_+_68233361_68233373	0.16452098320659694	Rara	ENSMUST00000103320.3|Igkv14-111|ENSMUSG00000095771.3|immunoglobulin kappa variable 14-111
mm39_v1_chrX_-_104918911_104919032	0.15456909067385674	Rara	ENSMUST00000200471.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr6_+_68026941_68026967	0.15274868374590053	Rara	ENSMUST00000103316.2|Igkv9-120|ENSMUSG00000094872.2|immunoglobulin kappa chain variable 9-120
mm39_v1_chr7_+_4925781_4925976	0.15021929503555104	Rara	ENSMUST00000207527.2|Nat14|ENSMUSG00000035285.7|N-acetyltransferase 14	ENSMUST00000207687.2|Nat14|ENSMUSG00000035285.7|N-acetyltransferase 14	ENSMUST00000208754.2|Nat14|ENSMUSG00000035285.7|N-acetyltransferase 14
mm39_v1_chr8_+_91681550_91681688	0.14827959522307246	Rara	ENSMUST00000210947.2|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr14_+_58308004_58308004	0.1412936201851291	Rara	ENSMUST00000165526.9|Fgf9|ENSMUSG00000021974.16|fibroblast growth factor 9
mm39_v1_chr4_-_123458465_123458494	0.13455681410575193	Rara	ENSMUST00000238731.2|Macf1|ENSMUSG00000028649.22|microtubule-actin crosslinking factor 1
mm39_v1_chr3_-_103716593_103716760	0.1341625909962312	Rara	ENSMUST00000063502.13|Dclre1b|ENSMUSG00000027845.16|DNA cross-link repair 1B	ENSMUST00000106832.2|Dclre1b|ENSMUSG00000027845.16|DNA cross-link repair 1B	ENSMUST00000106834.8|Dclre1b|ENSMUSG00000027845.16|DNA cross-link repair 1B	ENSMUST00000029435.15|Dclre1b|ENSMUSG00000027845.16|DNA cross-link repair 1B
mm39_v1_chr7_-_18350423_18350431	0.13329552847363826	Rara	ENSMUST00000057810.7|Psg23|ENSMUSG00000074359.3|pregnancy-specific glycoprotein 23
mm39_v1_chr17_+_34812361_34812384	0.13213400365470665	Rara	ENSMUST00000174532.2|Pbx2|ENSMUSG00000034673.15|pre B cell leukemia homeobox 2
mm39_v1_chrX_-_104919201_104919240	0.13121056833787126	Rara	ENSMUST00000198209.2|Atrx|ENSMUSG00000031229.17|ATRX, chromatin remodeler
mm39_v1_chr13_+_49574694_49574779	0.1223601342352607	Rara	ENSMUST00000220447.2|Ippk|ENSMUSG00000021385.11|inositol 1,3,4,5,6-pentakisphosphate 2-kinase
mm39_v1_chr7_+_16884194_16884207	0.11329217710653623	Rara	ENSMUST00000108491.8|Ceacam3|ENSMUSG00000053228.13|carcinoembryonic antigen-related cell adhesion molecule 3
mm39_v1_chr14_-_75185281_75185324	0.11147866224298515	Rara	ENSMUST00000088970.7|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1	ENSMUST00000228252.2|Lrch1|ENSMUSG00000068015.9|leucine-rich repeats and calponin homology (CH) domain containing 1
mm39_v1_chr5_-_137623331_137623341	0.10920033526725605	Rara	ENSMUST00000031732.14|Fbxo24|ENSMUSG00000089984.8|F-box protein 24
mm39_v1_chr1_-_172034251_172034322	0.1076557048302877	Rara	ENSMUST00000155109.2|Pea15a|ENSMUSG00000013698.13|phosphoprotein enriched in astrocytes 15A
mm39_v1_chr11_-_50844572_50844596	0.10527851138435605	Rara	ENSMUST00000162420.2|Prop1|ENSMUSG00000044542.4|paired like homeodomain factor 1	ENSMUST00000051159.3|Prop1|ENSMUSG00000044542.4|paired like homeodomain factor 1
mm39_v1_chr2_+_181007177_181007231	0.09312457057954728	Rara	ENSMUST00000108807.9|Zgpat|ENSMUSG00000027582.17|zinc finger, CCCH-type with G patch domain
mm39_v1_chr5_+_53747556_53747725	0.084497060534077	Rara	ENSMUST00000037618.13|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region	ENSMUST00000201912.4|Rbpj|ENSMUSG00000039191.13|recombination signal binding protein for immunoglobulin kappa J region
mm39_v1_chr6_-_124519240_124519318	0.07890525367605962	Rara	ENSMUST00000159463.8|C1s1|ENSMUSG00000038521.18|complement component 1, s subcomponent 1	ENSMUST00000162844.2|C1s1|ENSMUSG00000038521.18|complement component 1, s subcomponent 1	ENSMUST00000160505.8|C1s1|ENSMUSG00000038521.18|complement component 1, s subcomponent 1	ENSMUST00000162443.8|C1s1|ENSMUSG00000038521.18|complement component 1, s subcomponent 1
mm39_v1_chr2_-_181007099_181007197	0.07613511238644341	Rara	ENSMUST00000108808.8|Arfrp1|ENSMUSG00000038671.16|ADP-ribosylation factor related protein 1	ENSMUST00000170190.8|Arfrp1|ENSMUSG00000038671.16|ADP-ribosylation factor related protein 1	ENSMUST00000127988.8|Arfrp1|ENSMUSG00000038671.16|ADP-ribosylation factor related protein 1
mm39_v1_chr14_-_70864666_70864748	0.07557742954731571	Rara	ENSMUST00000022694.17|Dmtn|ENSMUSG00000022099.18|dematin actin binding protein
mm39_v1_chr6_-_54949587_54949612	0.07141937114000625	Rara	ENSMUST00000060655.15|Nod1|ENSMUSG00000038058.15|nucleotide-binding oligomerization domain containing 1
mm39_v1_chr4_-_128503774_128503891	0.07135499433533965	Rara	ENSMUST00000141040.2|Zscan20|ENSMUSG00000061894.16|zinc finger and SCAN domains 20	ENSMUST00000147876.2|Zscan20|ENSMUSG00000061894.16|zinc finger and SCAN domains 20	ENSMUST00000097877.9|Zscan20|ENSMUSG00000061894.16|zinc finger and SCAN domains 20
mm39_v1_chr14_+_20724378_20724497	0.07093250546667078	Rara	ENSMUST00000224492.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000223751.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000225108.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)	ENSMUST00000224754.2|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr9_-_44624496_44624562	0.07055745379347181	Rara	ENSMUST00000144251.8|Phldb1|ENSMUSG00000048537.17|pleckstrin homology like domain, family B, member 1	ENSMUST00000156918.8|Phldb1|ENSMUSG00000048537.17|pleckstrin homology like domain, family B, member 1
mm39_v1_chr9_-_45896663_45896712	0.06808002051097606	Rara	ENSMUST00000214179.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm39_v1_chr14_+_20724366_20724376	0.066986358692798	Rara	ENSMUST00000048657.10|Sec24c|ENSMUSG00000039367.12|Sec24 related gene family, member C (S. cerevisiae)
mm39_v1_chr2_-_90900525_90900594	0.06599056575974863	Rara	ENSMUST00000153367.2|Slc39a13|ENSMUSG00000002105.16|solute carrier family 39 (metal ion transporter), member 13	ENSMUST00000079976.10|Slc39a13|ENSMUSG00000002105.16|solute carrier family 39 (metal ion transporter), member 13
mm39_v1_chr4_+_41348996_41349008	0.06388808883218779	Rara	ENSMUST00000108060.10|Ubap1|ENSMUSG00000028437.15|ubiquitin-associated protein 1	ENSMUST00000072866.12|Ubap1|ENSMUSG00000028437.15|ubiquitin-associated protein 1
mm39_v1_chr14_-_30075424_30075492	0.06266388046369127	Rara	ENSMUST00000224198.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000238675.2|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000112249.10|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit	ENSMUST00000224785.3|Cacna1d|ENSMUSG00000015968.19|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm39_v1_chr17_+_34131696_34131724	0.06167108048595953	Rara	ENSMUST00000174146.3|Daxx|ENSMUSG00000002307.17|Fas death domain-associated protein
mm39_v1_chr5_+_114991722_114991727	0.059864898401346754	Rara	ENSMUST00000031547.12|4930519G04Rik|ENSMUSG00000029564.13|RIKEN cDNA 4930519G04 gene
mm39_v1_chr3_+_96011810_96011883	0.05678797087825199	Rara	ENSMUST00000132980.8|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B	ENSMUST00000138206.8|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B	ENSMUST00000090785.9|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B	ENSMUST00000035519.12|Otud7b|ENSMUSG00000038495.15|OTU domain containing 7B
mm39_v1_chrX_+_8137881_8138029	0.05664231805296544	Rara	ENSMUST00000115590.2|Slc38a5|ENSMUSG00000031170.15|solute carrier family 38, member 5
mm39_v1_chr15_-_103231921_103231993	0.05603720382249549	Rara	ENSMUST00000229551.2|Zfp385a|ENSMUSG00000000552.11|zinc finger protein 385A
mm39_v1_chr10_+_4561974_4562075	0.055529072877534745	Rara	ENSMUST00000105590.8|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)	ENSMUST00000067086.14|Esr1|ENSMUSG00000019768.17|estrogen receptor 1 (alpha)
mm39_v1_chr16_-_19079594_19079640	0.05497139260786361	Rara	ENSMUST00000103752.3|Iglv2|ENSMUSG00000076940.4|immunoglobulin lambda variable 2	ENSMUST00000197518.2|Iglv2|ENSMUSG00000076940.4|immunoglobulin lambda variable 2
mm39_v1_chr4_+_119590971_119590999	0.05423990624417967	Rara	ENSMUST00000084306.5|Hivep3|ENSMUSG00000028634.18|human immunodeficiency virus type I enhancer binding protein 3
mm39_v1_chr3_-_94922525_94922572	0.04625115026790403	Rara	ENSMUST00000128438.2|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687	ENSMUST00000149747.2|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687	ENSMUST00000019482.8|Zfp687|ENSMUSG00000019338.14|zinc finger protein 687
mm39_v1_chr2_+_173561208_173561230	0.04490760694890892	Rara	ENSMUST00000073081.6|1700010B08Rik|ENSMUSG00000057047.6|RIKEN cDNA 1700010B08 gene
mm39_v1_chr11_+_4936824_4936894	0.04486408197396169	Rara	ENSMUST00000109897.8|Ap1b1|ENSMUSG00000009090.18|adaptor protein complex AP-1, beta 1 subunit	ENSMUST00000009234.16|Ap1b1|ENSMUSG00000009090.18|adaptor protein complex AP-1, beta 1 subunit
mm39_v1_chr9_-_96513529_96513670	0.038428528241779544	Rara	ENSMUST00000034984.8|Rasa2|ENSMUSG00000032413.13|RAS p21 protein activator 2
mm39_v1_chr13_+_95012107_95012119	0.03781942805747541	Rara	ENSMUST00000022195.13|Otp|ENSMUSG00000021685.13|orthopedia homeobox
mm39_v1_chr5_+_88073438_88073480	0.03677317255631827	Rara	ENSMUST00000001667.13|Csn3|ENSMUSG00000001622.16|casein kappa	ENSMUST00000113267.8|Csn3|ENSMUSG00000001622.16|casein kappa
mm39_v1_chr17_-_56440817_56440857	0.03672236746883106	Rara	ENSMUST00000167545.3|Sema6b|ENSMUSG00000001227.13|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm39_v1_chr2_+_26209755_26209785	0.036626146688475525	Rara	ENSMUST00000066889.13|Gpsm1|ENSMUSG00000026930.16|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm39_v1_chr11_-_69728560_69728626	0.03556157216183446	Rara	ENSMUST00000108634.9|Nlgn2|ENSMUSG00000051790.16|neuroligin 2
mm39_v1_chr19_-_12209960_12209960	0.034533952593826044	Rara	ENSMUST00000207710.3|Olfr1432|ENSMUSG00000109022.3|olfactory receptor 1432
mm39_v1_chr13_+_83720457_83720476	0.028863032479144863	Rara	ENSMUST00000196730.5|Mef2c|ENSMUSG00000005583.17|myocyte enhancer factor 2C
mm39_v1_chr18_-_39652468_39652478	0.028528789798269807	Rara	ENSMUST00000237944.2|Nr3c1|ENSMUSG00000024431.16|nuclear receptor subfamily 3, group C, member 1
mm39_v1_chr14_+_55855484_55855494	0.028160971545000264	Rara	ENSMUST00000002395.8|Rec8|ENSMUSG00000002324.9|REC8 meiotic recombination protein
mm39_v1_chr3_+_79791798_79791904	0.027550678570940484	Rara	ENSMUST00000118853.8|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B	ENSMUST00000145992.2|Gask1b|ENSMUSG00000027955.17|golgi associated kinase 1B
mm39_v1_chr4_-_152402915_152403111	0.02375326091650813	Rara	ENSMUST00000170820.3|Rnf207|ENSMUSG00000058498.13|ring finger protein 207	ENSMUST00000076183.12|Rnf207|ENSMUSG00000058498.13|ring finger protein 207
mm39_v1_chr9_-_56325344_56325365	0.023090520046878636	Rara	ENSMUST00000061552.15|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr5_-_113285852_113285964	0.019287382483971226	Rara	ENSMUST00000212276.2|2900026A02Rik|ENSMUSG00000051339.11|RIKEN cDNA 2900026A02 gene
mm39_v1_chr9_-_108903117_108903208	0.018062218155132446	Rara	ENSMUST00000161521.8|Atrip|ENSMUSG00000025646.10|ATR interacting protein	ENSMUST00000045011.9|Atrip|ENSMUSG00000025646.10|ATR interacting protein
mm39_v1_chr3_+_151916106_151916171	0.01662135780240452	Rara	ENSMUST00000199202.5|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1	ENSMUST00000200524.5|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1	ENSMUST00000198227.5|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1	ENSMUST00000196739.5|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1	ENSMUST00000196695.5|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1	ENSMUST00000106121.6|Fubp1|ENSMUSG00000028034.16|far upstream element (FUSE) binding protein 1
mm39_v1_chr7_-_16790594_16790605	0.015772311540829552	Rara	ENSMUST00000037762.11|Hif3a|ENSMUSG00000004328.16|hypoxia inducible factor 3, alpha subunit
mm39_v1_chr6_+_67873135_67873156	0.015379846465597173	Rara	ENSMUST00000103310.3|Igkv14-126|ENSMUSG00000094345.3|immunoglobulin kappa variable 14-126
mm39_v1_chr8_-_120505104_120505171	0.013919814097572552	Rara	ENSMUST00000212534.2|Meak7|ENSMUSG00000034105.10|MTOR associated protein , eak-7 homolog	ENSMUST00000049156.7|Meak7|ENSMUSG00000034105.10|MTOR associated protein , eak-7 homolog
mm39_v1_chr8_-_72966663_72966663	0.013752578215651833	Rara	ENSMUST00000098630.5|Cib3|ENSMUSG00000074240.6|calcium and integrin binding family member 3
mm39_v1_chr9_-_45896075_45896106	0.010369608540846878	Rara	ENSMUST00000217636.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm39_v1_chr9_-_56325307_56325335	0.008912753575899502	Rara	ENSMUST00000186735.2|Peak1|ENSMUSG00000074305.10|pseudopodium-enriched atypical kinase 1
mm39_v1_chr7_-_115445352_115445389	0.008866671102346096	Rara	ENSMUST00000206369.2|Sox6|ENSMUSG00000051910.14|SRY (sex determining region Y)-box 6
mm39_v1_chr8_+_106877025_106877050	0.007773969324598548	Rara	ENSMUST00000212963.2|Pla2g15|ENSMUSG00000031903.8|phospholipase A2, group XV	ENSMUST00000034377.8|Pla2g15|ENSMUSG00000031903.8|phospholipase A2, group XV
mm39_v1_chr6_+_68495964_68495996	0.006862678656814417	Rara	ENSMUST00000199510.5|Igkv14-100|ENSMUSG00000096515.6|immunoglobulin kappa chain variable 14-100	ENSMUST00000103325.3|Igkv14-100|ENSMUSG00000096515.6|immunoglobulin kappa chain variable 14-100
mm39_v1_chr6_+_41107047_41107081	0.005141850375670504	Rara	ENSMUST00000103271.2|Trbv13-3|ENSMUSG00000076470.2|T cell receptor beta, variable 13-3
mm39_v1_chr9_-_45896110_45896154	0.004440864793506244	Rara	ENSMUST00000215060.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	ENSMUST00000213853.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	ENSMUST00000216334.2|Pafah1b2|ENSMUSG00000003131.8|platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
mm39_v1_chr11_+_87457544_87457628	0.004367691763971019	Rara	ENSMUST00000060360.7|Septin4|ENSMUSG00000020486.20|septin 4
mm39_v1_chr7_+_15484302_15484306	0.0038626043351778325	Rara	ENSMUST00000098802.10|Obox5|ENSMUSG00000074366.10|oocyte specific homeobox 5	ENSMUST00000173053.2|Obox5|ENSMUSG00000074366.10|oocyte specific homeobox 5
mm39_v1_chr2_-_25507680_25507703	0.0025199034678995477	Rara	ENSMUST00000028309.4|Ccdc183|ENSMUSG00000026940.4|coiled-coil domain containing 183
