mm39_v1_chr13_-_23882437_23882443	5.183050629306976	Runx3	ENSMUST00000102967.3|H4c3|ENSMUSG00000060678.6|H4 clustered histone 3
mm39_v1_chr13_-_23735822_23735849	4.616957217196563	Runx3	ENSMUST00000102971.2|H4c6|ENSMUSG00000069274.4|H4 clustered histone 6
mm39_v1_chr13_-_22016364_22016369	3.1252234009977444	Runx3	ENSMUST00000102979.2|H4c18|ENSMUSG00000069305.4|H4 clustered histone 18
mm39_v1_chr13_+_21919225_21919240	3.1023763514525857	Runx3	ENSMUST00000087714.6|H4c11|ENSMUSG00000067455.6|H4 clustered histone 11
mm39_v1_chr13_-_21934675_21934719	3.052114926526058	Runx3	ENSMUST00000102983.2|H4c12|ENSMUSG00000064288.5|H4 clustered histone 12
mm39_v1_chr6_-_136781406_136781425	2.79239322152893	Runx3	ENSMUST00000179285.3|H4f16|ENSMUSG00000096010.3|H4 histone 16
mm39_v1_chr13_-_22225527_22225533	1.386163348384215	Runx3	ENSMUST00000102977.4|H4c9|ENSMUSG00000060639.6|H4 clustered histone 9
mm39_v1_chr14_-_98406977_98407031	0.9977450571395273	Runx3	ENSMUST00000071533.13|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1	ENSMUST00000069334.8|Dach1|ENSMUSG00000055639.17|dachshund family transcription factor 1
mm39_v1_chrX_-_97934387_97934598	0.8076527583703654	Runx3	ENSMUST00000113826.8|Ophn1|ENSMUSG00000031214.14|oligophrenin 1	ENSMUST00000033560.9|Ophn1|ENSMUSG00000031214.14|oligophrenin 1	ENSMUST00000142267.2|Ophn1|ENSMUSG00000031214.14|oligophrenin 1
mm39_v1_chr5_-_36987917_36987999	0.7975111955484355	Runx3	ENSMUST00000031002.10|Man2b2|ENSMUSG00000029119.10|mannosidase 2, alpha B2
mm39_v1_chr12_+_44315927_44316012	0.7787028312305606	Runx3	ENSMUST00000043082.16|Pnpla8|ENSMUSG00000036257.16|patatin-like phospholipase domain containing 8	ENSMUST00000218954.2|Pnpla8|ENSMUSG00000036257.16|patatin-like phospholipase domain containing 8
mm39_v1_chr9_+_106306736_106306808	0.7282458599352126	Runx3	ENSMUST00000098994.7|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29	ENSMUST00000059802.7|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29	ENSMUST00000213448.2|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29	ENSMUST00000217081.2|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29
mm39_v1_chr2_+_37080286_37080286	0.7002039946811449	Runx3	ENSMUST00000218602.2|Olfr365|ENSMUSG00000059429.4|olfactory receptor 365
mm39_v1_chr9_+_106306598_106306657	0.6885742227134354	Runx3	ENSMUST00000150576.8|Rpl29|ENSMUSG00000048758.15|ribosomal protein L29
mm39_v1_chr19_-_20368029_20368044	0.5735382194078875	Runx3	ENSMUST00000235280.2|Anxa1|ENSMUSG00000024659.16|annexin A1
mm39_v1_chr13_-_115238427_115238520	0.5622224226781257	Runx3	ENSMUST00000224997.2|Gm49395|ENSMUSG00000114470.2|predicted gene, 49395	ENSMUST00000061673.9|Itga1|ENSMUSG00000042284.11|integrin alpha 1
mm39_v1_chrX_+_162691978_162692013	0.5189158039281687	Runx3	ENSMUST00000069041.15|Ap1s2|ENSMUSG00000031367.16|adaptor-related protein complex 1, sigma 2 subunit
mm39_v1_chr16_-_10131804_10131832	0.4256242686657079	Runx3	ENSMUST00000078357.5|Emp2|ENSMUSG00000022505.10|epithelial membrane protein 2
mm39_v1_chr13_+_38009981_38010020	0.416260261993176	Runx3	ENSMUST00000110238.10|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr10_+_42378193_42378286	0.4005947721186657	Runx3	ENSMUST00000105499.2|Snx3|ENSMUSG00000019804.13|sorting nexin 3
mm39_v1_chr9_+_109760931_109760953	0.39228047111173703	Runx3	ENSMUST00000165876.8|Map4|ENSMUSG00000032479.16|microtubule-associated protein 4
mm39_v1_chr15_-_78739717_78739736	0.391859367620152	Runx3	ENSMUST00000044584.6|Lgals2|ENSMUSG00000043501.6|lectin, galactose-binding, soluble 2
mm39_v1_chr9_+_109760528_109760554	0.38350368199951124	Runx3	ENSMUST00000035055.15|Map4|ENSMUSG00000032479.16|microtubule-associated protein 4
mm39_v1_chr14_-_72946972_72947044	0.37703491040289666	Runx3	ENSMUST00000162478.8|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chr5_+_135382149_135382150	0.3757643384642769	Runx3	ENSMUST00000111180.9|Trim50|ENSMUSG00000053388.11|tripartite motif-containing 50	ENSMUST00000065785.4|Trim50|ENSMUSG00000053388.11|tripartite motif-containing 50
mm39_v1_chr1_-_24139263_24139377	0.3546970928069562	Runx3	ENSMUST00000187369.7|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A	ENSMUST00000187752.7|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A	ENSMUST00000186999.7|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A
mm39_v1_chr2_+_145627900_145628073	0.34009838281476906	Runx3	ENSMUST00000110005.8|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2	ENSMUST00000094480.11|Rin2|ENSMUSG00000001768.17|Ras and Rab interactor 2
mm39_v1_chr4_+_19575128_19575216	0.33084490466069555	Runx3	ENSMUST00000108253.8|Rmdn1|ENSMUSG00000028229.12|regulator of microtubule dynamics 1	ENSMUST00000029888.4|Rmdn1|ENSMUSG00000028229.12|regulator of microtubule dynamics 1
mm39_v1_chr7_+_126690525_126690596	0.29175266566620167	Runx3	ENSMUST00000056288.7|AI467606|ENSMUSG00000045165.7|expressed sequence AI467606	ENSMUST00000206102.2|AI467606|ENSMUSG00000045165.7|expressed sequence AI467606
mm39_v1_chr17_+_28547548_28547571	0.2883427766610945	Runx3	ENSMUST00000233895.2|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A	ENSMUST00000232867.2|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A
mm39_v1_chr13_-_51888737_51888799	0.2363920050918774	Runx3	ENSMUST00000110039.2|Sema4d|ENSMUSG00000021451.17|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm39_v1_chr9_+_109760856_109760868	0.21408278962875096	Runx3	ENSMUST00000169851.8|Map4|ENSMUSG00000032479.16|microtubule-associated protein 4
mm39_v1_chr18_-_47501513_47501559	0.18839663255672778	Runx3	ENSMUST00000076043.13|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	ENSMUST00000135790.8|Sema6a|ENSMUSG00000019647.17|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm39_v1_chr1_+_40505136_40505168	0.18490164860787933	Runx3	ENSMUST00000087983.8|Il18r1|ENSMUSG00000026070.16|interleukin 18 receptor 1	ENSMUST00000195684.6|Il18r1|ENSMUSG00000026070.16|interleukin 18 receptor 1	ENSMUST00000108044.4|Il18r1|ENSMUSG00000026070.16|interleukin 18 receptor 1
mm39_v1_chr3_-_7678785_7678792	0.15870425335571933	Runx3	ENSMUST00000194279.6|Il7|ENSMUSG00000040329.15|interleukin 7
mm39_v1_chr16_+_4825216_4825241	0.1558607890364768	Runx3	ENSMUST00000185147.8|Smim22|ENSMUSG00000096215.9|small integral membrane protein 22
mm39_v1_chr1_-_24139387_24139437	0.14724219134386776	Runx3	ENSMUST00000027337.15|Fam135a|ENSMUSG00000026153.16|family with sequence similarity 135, member A
mm39_v1_chr9_+_110361561_110361669	0.1467861943679649	Runx3	ENSMUST00000153838.8|Setd2|ENSMUSG00000044791.17|SET domain containing 2
mm39_v1_chr12_-_98225676_98225718	0.14657215379045044	Runx3	ENSMUST00000021390.9|Galc|ENSMUSG00000021003.11|galactosylceramidase
mm39_v1_chr17_+_27775471_27775609	0.1449335645682969	Runx3	ENSMUST00000118599.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232265.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000232013.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000114888.11|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231874.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000119486.9|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231825.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1	ENSMUST00000231866.2|Hmga1|ENSMUSG00000046711.17|high mobility group AT-hook 1
mm39_v1_chr17_+_28547445_28547526	0.14290920546192185	Runx3	ENSMUST00000042334.16|Rpl10a|ENSMUSG00000037805.16|ribosomal protein L10A
mm39_v1_chr7_+_28508220_28508254	0.10978607480702951	Runx3	ENSMUST00000172529.8|Hnrnpl|ENSMUSG00000015165.17|heterogeneous nuclear ribonucleoprotein L
mm39_v1_chr11_-_5828251_5828292	0.10871130812121677	Runx3	ENSMUST00000102922.10|Pold2|ENSMUSG00000020471.12|polymerase (DNA directed), delta 2, regulatory subunit
mm39_v1_chr10_-_80837173_80837212	0.09773532704746185	Runx3	ENSMUST00000099462.8|Gng7|ENSMUSG00000048240.15|guanine nucleotide binding protein (G protein), gamma 7	ENSMUST00000118233.8|Gng7|ENSMUSG00000048240.15|guanine nucleotide binding protein (G protein), gamma 7
mm39_v1_chr2_-_28356294_28356369	0.08076919412157062	Runx3	ENSMUST00000127683.2|1700007K13Rik|ENSMUSG00000026831.17|RIKEN cDNA 1700007K13 gene	ENSMUST00000086370.11|1700007K13Rik|ENSMUSG00000026831.17|RIKEN cDNA 1700007K13 gene
mm39_v1_chr17_-_45744637_45744671	0.08014121681382608	Runx3	ENSMUST00000024727.10|Cdc5l|ENSMUSG00000023932.10|cell division cycle 5-like (S. pombe)
mm39_v1_chr13_+_14238361_14238407	0.07269351646528183	Runx3	ENSMUST00000129488.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110536.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110534.8|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000039538.15|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)	ENSMUST00000110533.2|Arid4b|ENSMUSG00000039219.19|AT rich interactive domain 4B (RBP1-like)
mm39_v1_chr15_-_95553841_95553841	0.06588654205549241	Runx3	ENSMUST00000054244.7|Dbx2|ENSMUSG00000045608.8|developing brain homeobox 2
mm39_v1_chr5_-_21629661_21629684	0.06392500293932962	Runx3	ENSMUST00000115245.8|Ccdc146|ENSMUSG00000064280.15|coiled-coil domain containing 146	ENSMUST00000030552.7|Ccdc146|ENSMUSG00000064280.15|coiled-coil domain containing 146
mm39_v1_chr6_+_115908709_115908819	0.06388155054294481	Runx3	ENSMUST00000032471.9|Rho|ENSMUSG00000030324.9|rhodopsin
mm39_v1_chr1_-_154602102_154602132	0.0603720828305937	Runx3	ENSMUST00000187541.7|Cacna1e|ENSMUSG00000004110.18|calcium channel, voltage-dependent, R type, alpha 1E subunit
mm39_v1_chr13_+_46822992_46823022	0.060285292816246845	Runx3	ENSMUST00000099547.4|Fam8a1|ENSMUSG00000069237.9|family with sequence similarity 8, member A1
mm39_v1_chr1_+_82938007_82938007	0.05670486844267832	Runx3	ENSMUST00000223536.2|Gm47955|ENSMUSG00000114011.2|predicted gene, 47955
mm39_v1_chr7_-_141710850_141710850	0.05563359958130801	Runx3	ENSMUST00000209599.2|Gm29735|ENSMUSG00000109655.2|predicted gene, 29735
mm39_v1_chr10_-_128133953_128133968	0.05271318577200253	Runx3	ENSMUST00000026449.3|Il23a|ENSMUSG00000025383.3|interleukin 23, alpha subunit p19
mm39_v1_chr2_+_155359868_155360008	0.049700379330047964	Runx3	ENSMUST00000029135.15|Acss2|ENSMUSG00000027605.19|acyl-CoA synthetase short-chain family member 2	ENSMUST00000065973.9|Acss2|ENSMUSG00000027605.19|acyl-CoA synthetase short-chain family member 2
mm39_v1_chr13_+_38009951_38009980	0.04772700544636707	Runx3	ENSMUST00000138043.8|Rreb1|ENSMUSG00000039087.18|ras responsive element binding protein 1
mm39_v1_chr6_+_21949570_21949684	0.04760111144852785	Runx3	ENSMUST00000031680.10|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000115389.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3	ENSMUST00000151473.8|Ing3|ENSMUSG00000029670.13|inhibitor of growth family, member 3
mm39_v1_chr17_-_23818458_23818464	0.04043233901866618	Runx3	ENSMUST00000057029.5|Zfp13|ENSMUSG00000062012.15|zinc finger protein 13
mm39_v1_chr9_-_58065800_58065844	0.04000762716475351	Runx3	ENSMUST00000168864.4|Islr|ENSMUSG00000037206.16|immunoglobulin superfamily containing leucine-rich repeat
mm39_v1_chr2_-_71377088_71377103	0.03918479322262379	Runx3	ENSMUST00000024159.8|Dlx2|ENSMUSG00000023391.9|distal-less homeobox 2
mm39_v1_chr6_-_135231168_135231288	0.036667839686052306	Runx3	ENSMUST00000111909.8|Gsg1|ENSMUSG00000030206.14|germ cell associated 1
mm39_v1_chr10_+_79590910_79590972	0.03254875632009903	Runx3	ENSMUST00000219981.2|Fgf22|ENSMUSG00000020327.5|fibroblast growth factor 22	ENSMUST00000219228.2|Fgf22|ENSMUSG00000020327.5|fibroblast growth factor 22	ENSMUST00000020577.4|Fgf22|ENSMUSG00000020327.5|fibroblast growth factor 22
mm39_v1_chr7_-_44624165_44624275	0.03034304165369559	Runx3	ENSMUST00000212836.2|Cpt1c|ENSMUSG00000007783.11|carnitine palmitoyltransferase 1c	ENSMUST00000212255.2|Cpt1c|ENSMUSG00000007783.11|carnitine palmitoyltransferase 1c	ENSMUST00000063761.8|Cpt1c|ENSMUSG00000007783.11|carnitine palmitoyltransferase 1c
mm39_v1_chrX_-_146337046_146337082	0.026738344305884627	Runx3	ENSMUST00000112819.9|Lrch2|ENSMUSG00000031290.15|leucine-rich repeats and calponin homology (CH) domain containing 2	ENSMUST00000136789.8|Lrch2|ENSMUSG00000031290.15|leucine-rich repeats and calponin homology (CH) domain containing 2
mm39_v1_chr7_+_141755098_141755104	0.025378006905526197	Runx3	ENSMUST00000187512.2|Krtap5-3|ENSMUSG00000046248.10|keratin associated protein 5-3	ENSMUST00000084414.6|Krtap5-3|ENSMUSG00000046248.10|keratin associated protein 5-3
mm39_v1_chr8_+_27937691_27937709	0.02458702793186309	Runx3	ENSMUST00000081321.5|Poteg|ENSMUSG00000063932.6|POTE ankyrin domain family, member G
mm39_v1_chr2_+_85822163_85822163	0.02373488856423449	Runx3	ENSMUST00000050942.3|Olfr1031|ENSMUSG00000043267.4|olfactory receptor 1031
mm39_v1_chr7_-_141698342_141698346	0.021669942555272385	Runx3	ENSMUST00000210537.2|Gm45337|ENSMUSG00000110061.2|predicted gene 45337
mm39_v1_chr12_+_103277234_103277288	0.021110638686765226	Runx3	ENSMUST00000191218.7|Fam181a|ENSMUSG00000096753.8|family with sequence similarity 181, member A
mm39_v1_chr11_-_32217547_32217707	0.02095705412526438	Runx3	ENSMUST00000109389.9|Nprl3|ENSMUSG00000020289.16|nitrogen permease regulator-like 3	ENSMUST00000129010.2|Nprl3|ENSMUSG00000020289.16|nitrogen permease regulator-like 3	ENSMUST00000020530.12|Nprl3|ENSMUSG00000020289.16|nitrogen permease regulator-like 3
mm39_v1_chr9_+_121548469_121548539	0.0196963631525375	Runx3	ENSMUST00000182225.8|Nktr|ENSMUSG00000032525.16|natural killer tumor recognition sequence
mm39_v1_chr4_-_133225849_133225867	0.018510326290123592	Runx3	ENSMUST00000125541.2|Trnp1|ENSMUSG00000056596.9|TMF1-regulated nuclear protein 1
mm39_v1_chr18_-_50701793_50701801	0.017598748222154695	Runx3	ENSMUST00000056460.4|Pudp|ENSMUSG00000048875.4|pseudouridine 5'-phosphatase
mm39_v1_chr1_-_82921109_82921109	0.01719114139828262	Runx3	ENSMUST00000222600.2|A030003K21Rik|ENSMUSG00000113084.2|RIKEN cDNA A030003K21 gene
mm39_v1_chr3_-_7678796_7678826	0.016877790167067665	Runx3	ENSMUST00000192202.6|Il7|ENSMUSG00000040329.15|interleukin 7
mm39_v1_chr4_-_70328659_70328702	0.013795424256469629	Runx3	ENSMUST00000144099.8|Cdk5rap2|ENSMUSG00000039298.17|CDK5 regulatory subunit associated protein 2
mm39_v1_chr15_+_98953776_98953851	0.013051911986202177	Runx3	ENSMUST00000229268.2|Prph|ENSMUSG00000023484.15|peripherin
mm39_v1_chr1_+_82902636_82902641	0.01199720099437247	Runx3	ENSMUST00000223400.2|A030014E15Rik|ENSMUSG00000113973.2|RIKEN cDNA A030014E15 gene
mm39_v1_chr4_+_134070492_134070523	0.008885682352610993	Runx3	ENSMUST00000105873.8|Slc30a2|ENSMUSG00000028836.15|solute carrier family 30 (zinc transporter), member 2	ENSMUST00000105874.9|Slc30a2|ENSMUSG00000028836.15|solute carrier family 30 (zinc transporter), member 2
mm39_v1_chr11_-_100098333_100098374	0.008355179701354881	Runx3	ENSMUST00000007272.8|Krt14|ENSMUSG00000045545.9|keratin 14
mm39_v1_chr16_-_20972750_20972750	0.007421262761705475	Runx3	ENSMUST00000170665.3|Teddm3|ENSMUSG00000090356.3|transmembrane epididymal family member 3
mm39_v1_chr2_+_155360015_155360027	0.006868809241768091	Runx3	ENSMUST00000103142.12|Acss2|ENSMUSG00000027605.19|acyl-CoA synthetase short-chain family member 2
mm39_v1_chr1_+_74317709_74317709	0.006642976064818271	Runx3	ENSMUST00000077985.4|Gpbar1|ENSMUSG00000064272.4|G protein-coupled bile acid receptor 1
mm39_v1_chr9_+_58395850_58395886	0.006078618483376381	Runx3	ENSMUST00000085658.5|Insyn1|ENSMUSG00000066607.6|inhibitory synaptic factor 1
mm39_v1_chr8_-_55177510_55177539	0.004869083249566306	Runx3	ENSMUST00000175915.8|Wdr17|ENSMUSG00000039375.17|WD repeat domain 17
mm39_v1_chrY_-_6917117_6917117	0.004777734086652558	Runx3	ENSMUST00000178016.2|Gm20830|ENSMUSG00000096686.3|predicted gene, 20830
mm39_v1_chr2_+_157756535_157756573	0.0037009751318762725	Runx3	ENSMUST00000109523.2|Vstm2l|ENSMUSG00000037843.7|V-set and transmembrane domain containing 2-like
mm39_v1_chr7_-_141794815_141794877	0.0029868966904552565	Runx3	ENSMUST00000211591.2|Gm40460|ENSMUSG00000110324.2|predicted gene, 40460
mm39_v1_chr11_-_57722830_57722973	0.0023120318822631245	Runx3	ENSMUST00000036917.3|Hand1|ENSMUSG00000037335.14|heart and neural crest derivatives expressed 1
mm39_v1_chr7_-_25516041_25516078	0.0018249497030980238	Runx3	ENSMUST00000043314.10|Cyp2s1|ENSMUSG00000040703.12|cytochrome P450, family 2, subfamily s, polypeptide 1
mm39_v1_chr7_+_106507208_106507208	0.00014350711910932846	Runx3	ENSMUST00000215949.2|Olfr1532-ps1|ENSMUSG00000073899.4|olfactory receptor 1532, pseudogene 1	ENSMUST00000207492.3|Olfr1532-ps1|ENSMUSG00000073899.4|olfactory receptor 1532, pseudogene 1
