mm39_v1_chr12_-_73093953_73093953	0.09752260180361139	UAAGACU	ENSMUST00000050029.8|Six1|ENSMUSG00000051367.9|sine oculis-related homeobox 1
mm39_v1_chr5_+_108213608_108213634	0.03362478790044008	UAAGACU	ENSMUST00000081567.11|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000170319.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2	ENSMUST00000112626.8|Mtf2|ENSMUSG00000029267.18|metal response element binding transcription factor 2
mm39_v1_chr17_+_6869070_6869070	0.030271108104688162	UAAGACU	ENSMUST00000092966.5|Dynlt1c|ENSMUSG00000000579.15|dynein light chain Tctex-type 1C
mm39_v1_chr11_+_44409775_44409827	0.02900880543699064	UAAGACU	ENSMUST00000019333.10|Rnf145|ENSMUSG00000019189.14|ring finger protein 145
mm39_v1_chr17_+_29312737_29312755	0.027137991312940403	UAAGACU	ENSMUST00000023829.8|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)	ENSMUST00000233296.2|Cdkn1a|ENSMUSG00000023067.15|cyclin-dependent kinase inhibitor 1A (P21)
mm39_v1_chr13_-_111626562_111626645	0.025936198493796705	UAAGACU	ENSMUST00000091236.11|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1	ENSMUST00000047627.14|Gpbp1|ENSMUSG00000032745.19|GC-rich promoter binding protein 1
mm39_v1_chr9_+_32607301_32607417	0.0245201257350037	UAAGACU	ENSMUST00000034534.13|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000050797.14|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain	ENSMUST00000184887.2|Ets1|ENSMUSG00000032035.17|E26 avian leukemia oncogene 1, 5' domain
mm39_v1_chr8_-_96215401_96215480	0.02393106464473263	UAAGACU	ENSMUST00000212214.2|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide	ENSMUST00000056919.9|Csnk2a2|ENSMUSG00000046707.10|casein kinase 2, alpha prime polypeptide
mm39_v1_chr14_-_31299275_31299340	0.022296134257965776	UAAGACU	ENSMUST00000112027.9|Colq|ENSMUSG00000057606.15|collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
mm39_v1_chr12_-_107969853_107969872	0.02158922437857691	UAAGACU	ENSMUST00000066060.11|Bcl11b|ENSMUSG00000048251.16|B cell leukemia/lymphoma 11B
mm39_v1_chr1_-_97589675_97589799	0.020069867760771957	UAAGACU	ENSMUST00000053033.14|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator	ENSMUST00000149927.2|Macir|ENSMUSG00000044768.17|macrophage immunometabolism regulator
mm39_v1_chr14_-_67106037_67106137	0.017761497085044747	UAAGACU	ENSMUST00000022629.9|Dpysl2|ENSMUSG00000022048.9|dihydropyrimidinase-like 2
mm39_v1_chr17_-_6367692_6367775	0.015129045676119965	UAAGACU	ENSMUST00000232499.2|Dynlt1a|ENSMUSG00000092074.3|dynein light chain Tctex-type 1A	ENSMUST00000169415.3|Dynlt1a|ENSMUSG00000092074.3|dynein light chain Tctex-type 1A
mm39_v1_chr17_-_52139693_52139706	0.012063100807752641	UAAGACU	ENSMUST00000144331.8|Satb1|ENSMUSG00000023927.16|special AT-rich sequence binding protein 1
mm39_v1_chr6_+_38410848_38410901	0.011854351290181165	UAAGACU	ENSMUST00000160583.8|Ubn2|ENSMUSG00000038538.18|ubinuclein 2
mm39_v1_chr9_+_86349207_86349225	0.011482890658602278	UAAGACU	ENSMUST00000190957.7|Dop1a|ENSMUSG00000034973.17|DOP1 leucine zipper like protein A
mm39_v1_chrX_+_98179725_98179744	0.01102171879658654	UAAGACU	ENSMUST00000052839.7|Efnb1|ENSMUSG00000031217.9|ephrin B1
mm39_v1_chr10_-_118705029_118705091	0.010188674404423266	UAAGACU	ENSMUST00000004281.10|Dyrk2|ENSMUSG00000028630.10|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
mm39_v1_chr17_-_63806963_63807070	0.00937845773168283	UAAGACU	ENSMUST00000024761.13|Fbxl17|ENSMUSG00000023965.14|F-box and leucine-rich repeat protein 17
mm39_v1_chr4_-_126323291_126323349	0.009313897799141156	UAAGACU	ENSMUST00000069097.13|Ago3|ENSMUSG00000028842.16|argonaute RISC catalytic subunit 3
mm39_v1_chr5_-_5315968_5316292	0.009174603677073583	UAAGACU	ENSMUST00000115451.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000115452.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14	ENSMUST00000131392.8|Cdk14|ENSMUSG00000028926.16|cyclin-dependent kinase 14
mm39_v1_chr19_-_32717166_32717194	0.008607209237174855	UAAGACU	ENSMUST00000235142.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000070210.6|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1	ENSMUST00000236011.2|Atad1|ENSMUSG00000013662.7|ATPase family, AAA domain containing 1
mm39_v1_chr1_+_131755715_131755757	0.00837248375416678	UAAGACU	ENSMUST00000086559.7|Slc41a1|ENSMUSG00000013275.10|solute carrier family 41, member 1
mm39_v1_chr11_+_44508137_44508169	0.00750922340745745	UAAGACU	ENSMUST00000109268.2|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000101326.10|Ebf1|ENSMUSG00000057098.15|early B cell factor 1	ENSMUST00000081265.12|Ebf1|ENSMUSG00000057098.15|early B cell factor 1
mm39_v1_chr9_+_121946321_121946401	0.007087518490233489	UAAGACU	ENSMUST00000119215.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000146832.8|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000118886.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000120173.9|Snrk|ENSMUSG00000038145.18|SNF related kinase	ENSMUST00000139181.2|Snrk|ENSMUSG00000038145.18|SNF related kinase
mm39_v1_chr14_-_105414294_105414361	0.007084195992670818	UAAGACU	ENSMUST00000163545.8|Rbm26|ENSMUSG00000022119.16|RNA binding motif protein 26
mm39_v1_chr4_-_41314877_41314889	0.007027936677956804	UAAGACU	ENSMUST00000030145.9|Dcaf12|ENSMUSG00000028436.9|DDB1 and CUL4 associated factor 12
mm39_v1_chr16_+_22926504_22926511	0.006698220018853218	UAAGACU	ENSMUST00000187168.7|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000232287.2|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2	ENSMUST00000077605.12|Eif4a2|ENSMUSG00000022884.17|eukaryotic translation initiation factor 4A2
mm39_v1_chr5_+_67765216_67765232	0.00668724384382924	UAAGACU	ENSMUST00000087241.7|Shisa3|ENSMUSG00000050010.9|shisa family member 3
mm39_v1_chr1_+_74545203_74545264	0.0065743553892367475	UAAGACU	ENSMUST00000087215.7|Cnot9|ENSMUSG00000026174.10|CCR4-NOT transcription complex, subunit 9
mm39_v1_chr13_-_56283331_56283444	0.0062216166312418835	UAAGACU	ENSMUST00000045788.9|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone	ENSMUST00000016081.13|Macroh2a1|ENSMUSG00000015937.16|macroH2A.1 histone
mm39_v1_chr14_+_69266566_69266687	0.005979605349971861	UAAGACU	ENSMUST00000014957.10|Stc1|ENSMUSG00000014813.10|stanniocalcin 1
mm39_v1_chr2_+_121859025_121859137	0.005871810136496382	UAAGACU	ENSMUST00000028668.8|Eif3j1|ENSMUSG00000027236.9|eukaryotic translation initiation factor 3, subunit J1
mm39_v1_chr18_+_38383297_38383340	0.005652744440576408	UAAGACU	ENSMUST00000025314.7|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1	ENSMUST00000236078.2|Dele1|ENSMUSG00000024442.7|DAP3 binding cell death enhancer 1
mm39_v1_chr9_+_45029080_45029179	0.005621354007992176	UAAGACU	ENSMUST00000170998.9|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta	ENSMUST00000093855.4|Scn2b|ENSMUSG00000070304.13|sodium channel, voltage-gated, type II, beta
mm39_v1_chr18_+_36414122_36414204	0.005305164096912095	UAAGACU	ENSMUST00000051301.6|Pura|ENSMUSG00000043991.6|purine rich element binding protein A
mm39_v1_chr3_-_119576911_119577037	0.0051652380432994595	UAAGACU	ENSMUST00000197464.5|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000198403.2|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2	ENSMUST00000029780.12|Ptbp2|ENSMUSG00000028134.12|polypyrimidine tract binding protein 2
mm39_v1_chr18_+_32296126_32296249	0.00488415035814511	UAAGACU	ENSMUST00000096575.5|Map3k2|ENSMUSG00000024383.10|mitogen-activated protein kinase kinase kinase 2
mm39_v1_chr11_+_97306353_97306402	0.004750059327300788	UAAGACU	ENSMUST00000121799.8|Arhgap23|ENSMUSG00000049807.17|Rho GTPase activating protein 23
mm39_v1_chr2_-_37537224_37537297	0.0042087806787971405	UAAGACU	ENSMUST00000028279.10|Strbp|ENSMUSG00000026915.17|spermatid perinuclear RNA binding protein
mm39_v1_chr6_-_100264439_100264461	0.00406025643671568	UAAGACU	ENSMUST00000101118.4|Rybp|ENSMUSG00000072872.4|RING1 and YY1 binding protein
mm39_v1_chr16_+_17051423_17051528	0.0039947797028674435	UAAGACU	ENSMUST00000090190.14|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2	ENSMUST00000232426.2|Gm49573|ENSMUSG00000116743.2|predicted gene, 49573	ENSMUST00000232082.2|Hic2|ENSMUSG00000050240.17|hypermethylated in cancer 2
mm39_v1_chr6_-_134543876_134543959	0.003645878484223303	UAAGACU	ENSMUST00000032322.15|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6	ENSMUST00000126836.4|Lrp6|ENSMUSG00000030201.16|low density lipoprotein receptor-related protein 6
mm39_v1_chr5_+_129970882_129970968	0.0034196696553157055	UAAGACU	ENSMUST00000201855.2|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1	ENSMUST00000073945.6|Vkorc1l1|ENSMUSG00000066735.9|vitamin K epoxide reductase complex, subunit 1-like 1
mm39_v1_chr11_-_82719850_82719869	0.003218888358824917	UAAGACU	ENSMUST00000021036.13|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000074515.11|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein	ENSMUST00000103218.3|Rffl|ENSMUSG00000020696.19|ring finger and FYVE like domain containing protein
mm39_v1_chr11_-_6425877_6425917	0.0028556019210054647	UAAGACU	ENSMUST00000179343.3|Purb|ENSMUSG00000094483.3|purine rich element binding protein B
mm39_v1_chr7_-_78228116_78228157	0.002835090000762661	UAAGACU	ENSMUST00000206268.2|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3	ENSMUST00000039431.14|Ntrk3|ENSMUSG00000059146.13|neurotrophic tyrosine kinase, receptor, type 3
mm39_v1_chr3_-_122778052_122778163	0.002647170496150162	UAAGACU	ENSMUST00000199401.2|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197314.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000197934.5|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53	ENSMUST00000090379.7|Usp53|ENSMUSG00000039701.12|ubiquitin specific peptidase 53
mm39_v1_chr3_-_79474989_79475000	0.002643188823616594	UAAGACU	ENSMUST00000076136.7|Fnip2|ENSMUSG00000061175.13|folliculin interacting protein 2
mm39_v1_chr16_-_15412371_15412396	0.0026113872215646687	UAAGACU	ENSMUST00000115776.2|Ube2v2|ENSMUSG00000022674.16|ubiquitin-conjugating enzyme E2 variant 2	ENSMUST00000115777.10|Ube2v2|ENSMUSG00000022674.16|ubiquitin-conjugating enzyme E2 variant 2
mm39_v1_chr9_-_78389006_78389033	0.002317318831281819	UAAGACU	ENSMUST00000042235.15|Eef1a1|ENSMUSG00000037742.15|eukaryotic translation elongation factor 1 alpha 1
mm39_v1_chr2_-_6889783_6889807	0.0022200325666938974	UAAGACU	ENSMUST00000170438.8|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114924.10|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2	ENSMUST00000114934.11|Celf2|ENSMUSG00000002107.19|CUGBP, Elav-like family member 2
mm39_v1_chr2_-_125624754_125624790	0.002210772181890886	UAAGACU	ENSMUST00000053699.13|Secisbp2l|ENSMUSG00000035093.17|SECIS binding protein 2-like
mm39_v1_chr1_-_9818601_9818676	0.0020263967678578565	UAAGACU	ENSMUST00000057438.7|Vcpip1|ENSMUSG00000045210.9|valosin containing protein (p97)/p47 complex interacting protein 1
mm39_v1_chr7_-_66339319_66339351	0.001871275403950662	UAAGACU	ENSMUST00000124899.8|Asb7|ENSMUSG00000030509.18|ankyrin repeat and SOCS box-containing 7
mm39_v1_chr3_-_116217579_116217681	0.0016366653471694779	UAAGACU	ENSMUST00000106491.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A	ENSMUST00000090464.7|Cdc14a|ENSMUSG00000033502.16|CDC14 cell division cycle 14A
mm39_v1_chr15_-_93173032_93173060	0.001619427051400947	UAAGACU	ENSMUST00000057896.5|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000049484.13|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1	ENSMUST00000230063.2|Gxylt1|ENSMUSG00000036197.17|glucoside xylosyltransferase 1
mm39_v1_chr12_+_32428691_32428709	0.0016128643652150649	UAAGACU	ENSMUST00000172332.4|Ccdc71l|ENSMUSG00000090946.4|coiled-coil domain containing 71 like
mm39_v1_chr1_+_191638854_191638879	0.0014722192880920802	UAAGACU	ENSMUST00000044954.7|Slc30a1|ENSMUSG00000037434.8|solute carrier family 30 (zinc transporter), member 1
mm39_v1_chrX_-_163763273_163763333	0.0014370474991754552	UAAGACU	ENSMUST00000112247.9|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2	ENSMUST00000004715.2|Mospd2|ENSMUSG00000061778.11|motile sperm domain containing 2
mm39_v1_chr4_+_41465134_41465164	0.0012709001053039148	UAAGACU	ENSMUST00000030154.7|Nudt2|ENSMUSG00000028443.7|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm39_v1_chr12_+_49429574_49429666	0.0012296658258140586	UAAGACU	ENSMUST00000179669.3|Foxg1|ENSMUSG00000020950.11|forkhead box G1
mm39_v1_chr18_-_16942289_16942384	0.0012056803747479594	UAAGACU	ENSMUST00000025166.14|Cdh2|ENSMUSG00000024304.15|cadherin 2
mm39_v1_chr14_-_72947422_72947467	0.001131912634914385	UAAGACU	ENSMUST00000089017.12|Fndc3a|ENSMUSG00000033487.15|fibronectin type III domain containing 3A
mm39_v1_chr15_+_58287305_58287361	0.0011017315998318512	UAAGACU	ENSMUST00000037270.5|Fam91a1|ENSMUSG00000037119.5|family with sequence similarity 91, member A1
mm39_v1_chr14_-_63482668_63482714	0.0008488490978217876	UAAGACU	ENSMUST00000118022.8|Gata4|ENSMUSG00000021944.16|GATA binding protein 4
mm39_v1_chr8_+_91555449_91555470	0.0007284812384083623	UAAGACU	ENSMUST00000109614.9|Chd9|ENSMUSG00000056608.15|chromodomain helicase DNA binding protein 9
mm39_v1_chr11_-_18968979_18968990	0.0007110733168595906	UAAGACU	ENSMUST00000144988.8|Meis1|ENSMUSG00000020160.19|Meis homeobox 1
mm39_v1_chr9_+_72439496_72439553	0.0002584569771643233	UAAGACU	ENSMUST00000163401.9|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7	ENSMUST00000093820.10|Rfx7|ENSMUSG00000037674.16|regulatory factor X, 7
mm39_v1_chr19_+_41471067_41471128	0.00019895387269620087	UAAGACU	ENSMUST00000067795.13|Lcor|ENSMUSG00000025019.18|ligand dependent nuclear receptor corepressor
mm39_v1_chr6_-_39183712_39183769	3.8801318892316325e-05	UAAGACU	ENSMUST00000002305.9|Kdm7a|ENSMUSG00000042599.9|lysine (K)-specific demethylase 7A
